AlfalfaGEDB | Msa0128370

M. sativa cultivar zhongmu-4 / Msa0128370

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0128370	XP_039685751.1	96.505	372	10	3	1	370	1	371	0.0	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0128370	sp\|O22264\|MYB12_ARATH	40.050	397	185	13	1	370	1	371	4.93e-73	234

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0128370	A0A396JRX5	96.505	372	10	3	1	370	1	371	0.0	723

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TFs/TRs:

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Gene ID	Type	Classification
Msa0128370	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0128370	0.804807	1.808914e-49	-8.615850e-47
Msa0006700	Msa0128370	0.815507	8.922427e-52	-8.615850e-47
Msa0008850	Msa0128370	0.842106	3.166431e-58	-8.615850e-47
Msa0011720	Msa0128370	0.800681	1.285793e-48	-8.615850e-47
Msa0017120	Msa0128370	0.813717	2.222468e-51	-8.615850e-47
Msa0020630	Msa0128370	0.829853	4.079494e-55	-8.615850e-47
Msa0024680	Msa0128370	0.858947	5.803139e-63	-8.615850e-47
Msa0027540	Msa0128370	0.860041	2.721991e-63	-8.615850e-47
Msa0028060	Msa0128370	0.812785	3.559804e-51	-8.615850e-47
Msa0030000	Msa0128370	0.833307	5.749909e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0128370	MtrunA17_Chr1g0194951	96.505	372	10	3	1	370	1	371	0.0	723
Msa0128370	MtrunA17_Chr7g0269831	46.457	381	165	10	1	368	1	355	2.13e-94	286
Msa0128370	MtrunA17_Chr4g0068061	60.894	179	56	3	1	174	1	170	3.48e-71	226
Msa0128370	MtrunA17_Chr7g0275911	68.852	122	38	0	1	122	1	122	8.71e-61	196
Msa0128370	MtrunA17_Chr8g0346561	68.966	116	36	0	1	116	1	116	3.67e-58	191
Msa0128370	MtrunA17_Chr4g0070641	65.323	124	43	0	1	124	1	124	1.32e-56	182
Msa0128370	MtrunA17_Chr1g0187761	64.662	133	44	1	1	130	1	133	1.48e-56	185
Msa0128370	MtrunA17_Chr4g0070611	65.323	124	43	0	1	124	1	124	2.38e-56	186
Msa0128370	MtrunA17_Chr3g0131121	69.492	118	36	0	1	118	1	118	2.73e-56	186
Msa0128370	MtrunA17_Chr3g0121241	65.600	125	38	1	5	129	35	154	2.94e-55	183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0128370	AT2G47460.1	40.050	397	185	13	1	370	1	371	5.01e-74	234
Msa0128370	AT5G49330.1	65.680	169	41	1	1	152	1	169	2.77e-73	231
Msa0128370	AT3G62610.1	39.740	385	175	8	1	370	1	343	9.17e-66	212
Msa0128370	AT3G61250.1	63.281	128	47	0	1	128	1	128	3.09e-56	186
Msa0128370	AT1G35515.1	61.151	139	50	1	1	135	1	139	6.16e-56	182
Msa0128370	AT2G31180.1	68.103	116	37	0	1	116	1	116	8.09e-56	183
Msa0128370	AT4G28110.1	64.655	116	41	0	1	116	1	116	6.23e-55	182
Msa0128370	AT5G15310.4	62.016	129	49	0	1	129	1	129	7.34e-55	181
Msa0128370	AT4G21440.1	44.186	215	101	5	1	205	1	206	7.89e-55	184
Msa0128370	AT1G06180.1	66.667	117	39	0	1	117	1	117	8.90e-55	181

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Find 101 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTAGCAATGTGTGTG+GGG	0.717965	1_3:+58046383	None:intergenic
AAACATTCACTAGTTAGATA+TGG	0.326108	1_3:-58046076	Msa0128370:exon
AACAAAATGATTTGATTGCT+TGG	0.355944	1_3:-58040929	Msa0128370:CDS
AACATTCACTAGTTAGATAT+GGG	0.455592	1_3:-58046075	Msa0128370:exon
AACTATAGAGCCAAAGATCA+TGG	0.469285	1_3:-58041636	Msa0128370:CDS
AAGACTGTCTCCATCATCAT+TGG	0.394370	1_3:+58041202	None:intergenic
AAGTACTCATGTCAAGACAA+TGG	0.614680	1_3:-58041318	Msa0128370:CDS
AAGTCAAGAGAGAGAAATGA+TGG	0.429496	1_3:-58041255	Msa0128370:CDS
AAGTCAATGGAGAAGGTTCT+TGG	0.351813	1_3:-58045969	Msa0128370:CDS
AATGAGACTAGACAACGAGG+TGG	0.709068	1_3:+58046265	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATTAAAACATATCTGTGG+TGG	+	chr1_3:58040786-58040805	None:intergenic	30.0%
CTCATACGTTTCATAATTGT+TGG	-	chr1_3:58040862-58040881	Msa0128370:three_prime_UTR	30.0%
TGTATAAATAAAGGGGAAAG+TGG	+	chr1_3:58041444-58041463	None:intergenic	30.0%
TTGTGTCAATTAAATTGGGA+CGG	-	chr1_3:58041492-58041511	Msa0128370:CDS	30.0%
GACAATGCATAATATATGCA+AGG	+	chr1_3:58041853-58041872	None:intergenic	30.0%
GGGAATTTGAAGGATTATTA+AGG	-	chr1_3:58041924-58041943	Msa0128370:intron	30.0%
TTTGAAGGATTATTAAGGTG+CGG	-	chr1_3:58041929-58041948	Msa0128370:intron	30.0%
AAAATGAATAAGAGATCACG+TGG	+	chr1_3:58042517-58042536	None:intergenic	30.0%
GTCATTGTTTCCAATTAAAC+TGG	-	chr1_3:58042695-58042714	Msa0128370:intron	30.0%
CACGAATTATTCCAAAACAT+AGG	+	chr1_3:58042796-58042815	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	58040733	58046482	58040733	ID=Msa0128370;Name=Msa0128370
chr1_3	mRNA	58040733	58046482	58040733	ID=Msa0128370-mRNA-1;Parent=Msa0128370;Name=Msa0128370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=300\|1\|1\|1\|0.66\|0.5\|4\|184\|370
chr1_3	exon	58040733	58041766	58040733	ID=Msa0128370-mRNA-1:exon:18617;Parent=Msa0128370-mRNA-1
chr1_3	exon	58045150	58045279	58045150	ID=Msa0128370-mRNA-1:exon:18616;Parent=Msa0128370-mRNA-1
chr1_3	exon	58045947	58046113	58045947	ID=Msa0128370-mRNA-1:exon:18615;Parent=Msa0128370-mRNA-1
chr1_3	exon	58046217	58046482	58046217	ID=Msa0128370-mRNA-1:exon:18614;Parent=Msa0128370-mRNA-1
chr1_3	five_prime_UTR	58046217	58046482	58046217	ID=Msa0128370-mRNA-1:five_prime_utr;Parent=Msa0128370-mRNA-1
chr1_3	five_prime_UTR	58046080	58046113	58046080	ID=Msa0128370-mRNA-1:five_prime_utr;Parent=Msa0128370-mRNA-1
chr1_3	CDS	58045947	58046079	58045947	ID=Msa0128370-mRNA-1:cds;Parent=Msa0128370-mRNA-1
chr1_3	CDS	58045150	58045279	58045150	ID=Msa0128370-mRNA-1:cds;Parent=Msa0128370-mRNA-1
chr1_3	CDS	58040917	58041766	58040917	ID=Msa0128370-mRNA-1:cds;Parent=Msa0128370-mRNA-1
chr1_3	three_prime_UTR	58040733	58040916	58040733	ID=Msa0128370-mRNA-1:three_prime_utr;Parent=Msa0128370-mRNA-1

Gene Sequence

>Msa0128370

ATGGGAAGAACTCCTTGTTGTGAGAAAGTAGGGCTGAAAAGGGGTAGATGGACAACAGAAGAAGATGAGATCTTGTCAAAATACATTCAAGTCAATGGAGAAGGTTCTTGGAGGTCATTGCCAAAGAATGCAGGATTATTAAGGTGCGGGAAGAGTTGTAGACTAAGATGGATTAACTATTTGAGAACTGACCTCAAAAGAGGAAACATATCTGCTCAAGAGGAAGACACCATTGTGAAGCTCCACACTACTTATGGTAACAGGTGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACGGACAATGAAATTAAAAACCATTGGAATTCTCACCTCAGCAGAAAAATCTACAGTTTCTCAAAAATTTCCACAACTATAGAGCCAAAGATCATGGATGTTCGTCCTCCTAAGCGTAAATGTGGTAAAACAAGTCGTTGGGCCATGAAGAAGAACAAAAGCTACAAAAAACAAACCGTTATTAATACTAAAGAAAATTATATTGAACCAGAAGTTCAAATTCCACGTACTCCTTCACTAGATTGTGAAGTTGTTACAGAGAAAATAATTGATGACGTGGAGGTAAAAACAACACATGATGAGAAAGAAACAACGTATGAATTATGTGACGACATCTTAGGGCTGAGTGAGTTGTTAGATGACATTAATGAAGACAGTGGGGCATTGTGCATAAGTACTCATGTCAAGACAATGGAAAATTGTTTGCTGGAAACAAGTGGGTCTGTTTCAAATTTAAGTCAAGAGAGAGAAATGATGGGTGATGGAGGTGAAGAAAATGAAAGAACAACCAATGATGATGGAGACAGTCTTAAATATAATTTGGTTTCATGTGAAGACCCCGAAAGTAGTGTGAACCAAACCTCAAATAACGGTGAAAGTGGAGAATGGTCTTTGAATATGGGTTTAGATTTGGATGATAAATGGAATTGGGAGAGTGTGATGGAATTTAGTGTTGATGATAATAGTAATAGGGAGCATAAAGATAATCTTTTGAATTGGTTGTGTGAAGATGATGATTGGGAAGGTGATAGTAAGAGTTTGGGAGAGATAGATCCTCAGAAACAAAATGATTTGATTGCTTGGTTTCTCTCTTGA

Protein sequence

>Msa0128370

MGRTPCCEKVGLKRGRWTTEEDEILSKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISAQEEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKISTTIEPKIMDVRPPKRKCGKTSRWAMKKNKSYKKQTVINTKENYIEPEVQIPRTPSLDCEVVTEKIIDDVEVKTTHDEKETTYELCDDILGLSELLDDINEDSGALCISTHVKTMENCLLETSGSVSNLSQEREMMGDGGEENERTTNDDGDSLKYNLVSCEDPESSVNQTSNNGESGEWSLNMGLDLDDKWNWESVMEFSVDDNSNREHKDNLLNWLCEDDDWEGDSKSLGEIDPQKQNDLIAWFLS*