AlfalfaGEDB | Msa0519130

M. sativa cultivar zhongmu-4 / Msa0519130

KEGG: K14684
GO: GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519130	XP_003602734.1	95.556	495	10	1	1	495	1	483	0.0	980

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519130	sp\|Q9FI43\|MAPC2_ARATH	69.325	489	131	4	9	495	16	487	0.0	701

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519130	G7J2S0	95.556	495	10	1	1	495	1	483	0.0	980

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004060	Msa0519130	0.810868	9.307390e-51	-8.615850e-47
Msa0031820	Msa0519130	0.809466	1.866319e-50	-8.615850e-47
Msa0057610	Msa0519130	0.807068	6.053238e-50	-8.615850e-47
Msa0094580	Msa0519130	0.819277	1.263513e-52	-8.615850e-47
Msa0101880	Msa0519130	0.842827	2.038526e-58	-8.615850e-47
Msa0118000	Msa0519130	0.800536	1.376393e-48	-8.615850e-47
Msa0145070	Msa0519130	0.802312	5.955251e-49	-8.615850e-47
Msa0165440	Msa0519130	0.811024	8.610102e-51	-8.615850e-47
Msa0171850	Msa0519130	0.805043	1.615250e-49	-8.615850e-47
Msa0188890	Msa0519130	0.805197	1.499525e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519130	MtrunA17_Chr3g0131501	95.556	495	10	1	1	495	1	483	0.0	980
Msa0519130	MtrunA17_Chr8g0385571	77.710	489	97	1	7	495	29	505	0.0	797
Msa0519130	MtrunA17_Chr7g0252401	67.689	489	139	3	9	495	11	482	0.0	696
Msa0519130	MtrunA17_Chr8g0347451	40.777	309	154	8	215	495	49	356	1.51e-67	221
Msa0519130	MtrunA17_Chr5g0396801	42.020	307	151	8	215	495	36	341	6.78e-66	216
Msa0519130	MtrunA17_Chr3g0137941	36.331	278	173	3	215	492	120	393	5.67e-53	184
Msa0519130	MtrunA17_Chr1g0149111	36.331	278	173	2	215	492	137	410	4.81e-52	182
Msa0519130	MtrunA17_Chr1g0149111	30.939	181	122	3	214	392	230	409	1.99e-17	84.3
Msa0519130	MtrunA17_Chr4g0063561	36.201	279	172	4	215	492	121	394	6.46e-50	176
Msa0519130	MtrunA17_Chr6g0488081	32.432	296	178	6	214	492	16	306	2.02e-45	161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0519130	AT5G51050.1	69.325	489	131	4	9	495	27	498	0.0	702
Msa0519130	AT5G07320.1	68.994	487	131	3	9	495	13	479	0.0	696
Msa0519130	AT5G61810.1	66.189	488	143	5	9	495	12	478	0.0	665
Msa0519130	AT5G61810.2	69.767	344	94	4	153	495	1	335	9.73e-176	497
Msa0519130	AT4G01100.1	40.952	315	145	8	215	495	40	347	5.41e-70	227
Msa0519130	AT4G01100.2	39.877	326	147	8	215	495	40	361	1.32e-68	224
Msa0519130	AT4G01100.3	40.594	303	139	8	227	495	2	297	5.66e-66	215
Msa0519130	AT4G01100.3	26.857	175	123	1	320	489	1	175	1.79e-19	89.4
Msa0519130	AT4G01100.3	27.919	197	119	4	219	392	97	293	4.32e-16	79.3
Msa0519130	AT4G32400.1	37.413	286	172	5	209	492	105	385	4.67e-54	187

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Find 145 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCCCTTATAAGCAT+CGG	0.584700	3_4:-71047868	None:intergenic
AAAGAAAATTATTACTCCTT+TGG	0.286922	3_4:+71048208	Msa0519130:three_prime_UTR
AAAGTAATTGGAGATGCTCA+AGG	0.602778	3_4:+71047171	Msa0519130:CDS
AAATATATTATTCATGATAG+TGG	0.486766	3_4:+71047477	Msa0519130:CDS
AAATGTGATGTCAAATGTGA+AGG	0.563503	3_4:-71044887	None:intergenic
AACAGTTCCGATGCTTATAA+GGG	0.400067	3_4:+71047861	Msa0519130:CDS
AACATAACTGGTAATTGCGA+CGG	0.565629	3_4:-71045054	None:intergenic
AACCAAATCAACACAATGGG+TGG	0.607177	3_4:+71045192	Msa0519130:exon
AAGAAAATTATTACTCCTTT+GGG	0.278498	3_4:+71048209	Msa0519130:three_prime_UTR
AAGAAATAACTATACCTAAT+TGG	0.287088	3_4:-71048124	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGATGTCAAATGTGAA+GGG	-	chr3_4:71044889-71044908	None:intergenic	30.0%
AAATGTGATGTCAAATGTGA+AGG	-	chr3_4:71044890-71044909	None:intergenic	30.0%
TTTATTTCCAGATCTGATGT+TGG	-	chr3_4:71045111-71045130	None:intergenic	30.0%
GATCTAGTGAAATGTTTCTT+GGG	-	chr3_4:71045239-71045258	None:intergenic	30.0%
TGATCTAGTGAAATGTTTCT+TGG	-	chr3_4:71045240-71045259	None:intergenic	30.0%
TAGGTGAATCAAAAGAAGAA+AGG	+	chr3_4:71045274-71045293	Msa0519130:CDS	30.0%
AGGTGAATCAAAAGAAGAAA+GGG	+	chr3_4:71045275-71045294	Msa0519130:CDS	30.0%
CTCCATCAAAGAAATTGAAA+AGG	-	chr3_4:71045317-71045336	None:intergenic	30.0%
GATTATGTTCAGATAGAGAA+AGG	+	chr3_4:71045354-71045373	Msa0519130:CDS	30.0%
CAATGAGTTTAGGAGATATA+TGG	+	chr3_4:71045467-71045486	Msa0519130:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	71044823	71048393	71044823	ID=Msa0519130;Name=Msa0519130
chr3_4	mRNA	71044823	71048393	71044823	ID=Msa0519130-mRNA-1;Parent=Msa0519130;Name=Msa0519130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=384\|0.66\|0.75\|1\|1\|1\|4\|359\|495
chr3_4	exon	71044823	71045591	71044823	ID=Msa0519130-mRNA-1:exon:19445;Parent=Msa0519130-mRNA-1
chr3_4	exon	71046680	71047498	71046680	ID=Msa0519130-mRNA-1:exon:19446;Parent=Msa0519130-mRNA-1
chr3_4	exon	71047620	71047710	71047620	ID=Msa0519130-mRNA-1:exon:19447;Parent=Msa0519130-mRNA-1
chr3_4	exon	71047842	71048393	71047842	ID=Msa0519130-mRNA-1:exon:19448;Parent=Msa0519130-mRNA-1
chr3_4	five_prime_UTR	71044823	71045206	71044823	ID=Msa0519130-mRNA-1:five_prime_utr;Parent=Msa0519130-mRNA-1
chr3_4	CDS	71045207	71045591	71045207	ID=Msa0519130-mRNA-1:cds;Parent=Msa0519130-mRNA-1
chr3_4	CDS	71046680	71047498	71046680	ID=Msa0519130-mRNA-1:cds;Parent=Msa0519130-mRNA-1
chr3_4	CDS	71047620	71047710	71047620	ID=Msa0519130-mRNA-1:cds;Parent=Msa0519130-mRNA-1
chr3_4	CDS	71047842	71048034	71047842	ID=Msa0519130-mRNA-1:cds;Parent=Msa0519130-mRNA-1
chr3_4	three_prime_UTR	71048035	71048393	71048035	ID=Msa0519130-mRNA-1:three_prime_utr;Parent=Msa0519130-mRNA-1

Gene Sequence

>Msa0519130

ATGGGTGGTGGCAGTATCAAAAAGAAGATCCCAAGAAACATTTCACTAGATCACGTGCTTGAGGCATTAGGTGAATCAAAAGAAGAAAGGGAAATTCGCATTCGAAGCCTTTTCAATTTCTTTGATGGAGGGAATAATGGGTACATAGATTATGTTCAGATAGAGAAAGGGTTATCTGCATTGCAAATTCCAGCGGAGTATAAATATGCAAGAGAGCTTTTCATGGTTTGTGATGCCAATAGTGATGGTAGGGTTGATTACAATGAGTTTAGGAGATATATGGATGATAAGGAATTGGAACTTTATTGTATTTTTCAAGCTATTGATGTTGAACATAGTGGTAGTATTCTTCCTGAAGAGCTTTGGGATGCTCTTGATAGGGCTGTATTTATCATAAGCATGAGCAGTTTCAATGCTGCAGGAATAGAAATGGATGAAGAGGAGCTTGCTCGCTTTGTGGAGCACGTTGACAAGGACAATAATGGAACTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCATGAAGCAACTATTGAAAATATATATCACCATTGGGAGAGAGTGTACCATGTAGACATTGGAGACCAAGCTGTCATTCCTGAAGACATTAGCAAGCACGCTAACCGGAGCAAATATTTTATCGCTGGAGGAATAGCAGGTGCTACTTCACGTACCGCGACTGCACCTCTCGATCGTCTGAAGGTGATGTTGCAAGTTCAGACTACACGTTCTTCTGTTGTTTCTGCTGTGACGACAATATGGAAGCAAGATAATATACGGGGATTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTAGCACCGGAAAGTGCAATCAAATTCTATGCTTTTGAAATGTTGAAAAAAGTAATTGGAGATGCTCAAGGTAACAATTCGGATATTGGTGCTGCTGGGAGGCTTTTAGCAGGTGGCGTGGCTGGTGGAATTGCGCAGACCGCAATCTATCCTATGGATCTTATCAAAACTAGGCTACAGACTTGTGCCTCTGAAGGTGGAAGGGCTCCTAAACTTGGAACCCTCACAAAGAATATATGGATTCAAGAAGGACCTCGAGCTTTCTACCGAGGACTTCTTCCGTCTGTGATTGGCATGATTCCTTATGCTGGCATTGATCTCGCTGTTTATGATACCTTGAAAGATATGTCCAAGAAATATATTATTCATGATAGTGATCCCGGTCCTCTAGTACAACTAGGATGTGGGACAATTTCTGGAACCCTTGGAGCTACATGTGTCTATCCACTGCAGGTTATTCGTACTAGGCTTCAGGCACAATCTTCGAACAGTTCCGATGCTTATAAGGGAATGTTTGATGCATTTTGTAGAACTTTTCAGCATGAAGGCTTTAGAGGTTTCTACAAAGGACTCCTTCCAAATCTACTCAAAGTTGTGCCAGCTGCGAGCATTACTTATATGGTCTATGAAAGTATGAAAAAAAATCTCGATCTAGAGTAG

Protein sequence

>Msa0519130

MGGGSIKKKIPRNISLDHVLEALGESKEEREIRIRSLFNFFDGGNNGYIDYVQIEKGLSALQIPAEYKYARELFMVCDANSDGRVDYNEFRRYMDDKELELYCIFQAIDVEHSGSILPEELWDALDRAVFIISMSSFNAAGIEMDEEELARFVEHVDKDNNGTITFEEWRDFLLLYPHEATIENIYHHWERVYHVDIGDQAVIPEDISKHANRSKYFIAGGIAGATSRTATAPLDRLKVMLQVQTTRSSVVSAVTTIWKQDNIRGFFRGNGLNVVKVAPESAIKFYAFEMLKKVIGDAQGNNSDIGAAGRLLAGGVAGGIAQTAIYPMDLIKTRLQTCASEGGRAPKLGTLTKNIWIQEGPRAFYRGLLPSVIGMIPYAGIDLAVYDTLKDMSKKYIIHDSDPGPLVQLGCGTISGTLGATCVYPLQVIRTRLQAQSSNSSDAYKGMFDAFCRTFQHEGFRGFYKGLLPNLLKVVPAASITYMVYESMKKNLDLE*