AlfalfaGEDB | Msa0259680

M. sativa cultivar zhongmu-4 / Msa0259680

KEGG: K08495
GO: GO:0000139 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796
PFAM: PF12352.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259680	XP_013465590.1	98.655	223	3	0	1	223	1	223	2.64e-158	447

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259680	sp\|Q9LMP7\|GOS11_ARATH	79.452	219	44	1	5	223	6	223	9.17e-124	352

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259680	A0A072VDE7	98.655	223	3	0	1	223	1	223	1.26e-158	447

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0259680	0.803991	2.676688e-49	-8.615850e-47
Msa0032470	Msa0259680	0.803225	3.858754e-49	-8.615850e-47
Msa0077370	Msa0259680	0.821314	4.313109e-53	-8.615850e-47
Msa0122530	Msa0259680	0.802801	4.722722e-49	-8.615850e-47
Msa0174100	Msa0259680	0.800157	1.643944e-48	-8.615850e-47
Msa0217670	Msa0259680	0.801171	1.021259e-48	-8.615850e-47
Msa0232790	Msa0259680	0.801973	6.992671e-49	-8.615850e-47
Msa0234410	Msa0259680	-0.808132	3.599756e-50	-8.615850e-47
Msa0237320	Msa0259680	0.811825	5.769077e-51	-8.615850e-47
Msa0256140	Msa0259680	0.836351	9.845734e-57	-8.615850e-47

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259680	MtrunA17_Chr2g0333751	98.655	223	3	0	1	223	1	223	2.43e-162	447
Msa0259680	MtrunA17_Chr4g0001201	85.377	212	31	0	12	223	2	213	1.44e-132	371
Msa0259680	MtrunA17_Chr4g0011831	36.481	233	127	6	6	223	14	240	6.90e-42	142

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0259680	AT1G15880.1	79.452	219	44	1	5	223	6	223	9.32e-125	352
Msa0259680	AT2G45200.1	36.481	233	127	5	6	223	13	239	4.91e-41	140
Msa0259680	AT2G45200.2	33.865	251	127	5	6	223	13	257	3.23e-38	133

Showing 1 to 3 of 3 entries

Previous1Next

Find 65 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTTGTAGAGTGAAA+GGG	0.449936	2_2:-56943844	None:intergenic
AAACTCACAGATGCAGGCTT+GGG	0.480195	2_2:+56941656	Msa0259680:CDS
AAAGATGATGTTTATTGTGT+TGG	0.505371	2_2:+56943605	Msa0259680:exon
AAATGCATACGGACCCAACA+AGG	0.613983	2_2:-56943552	None:intergenic
AAATTGAAACCTGTTTGCGA+AGG	0.567814	2_2:-56939441	None:intergenic
AACAAGATTAGATTTGGAAG+AGG	0.457292	2_2:+56942723	Msa0259680:CDS
AACCATTTCAGACCCACCAG+AGG	0.691979	2_2:-56941682	None:intergenic
AAGAAAACTTGAAGCTCAGT+TGG	0.529386	2_2:+56941515	Msa0259680:CDS
AATGCATACGGACCCAACAA+GGG	0.667761	2_2:-56943551	None:intergenic
AATTGAAACCTGTTTGCGAA+GGG	0.560013	2_2:-56939440	None:intergenic

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TACTATCACTATACAAAACC+AGG	-	chr2_2:56939653-56939672	None:intergenic	30.0%
TAGGATCAATGATCTATGAA+GGG	+	chr2_2:56939725-56939744	Msa0259680:intron	30.0%
TGCTTAGAAAACAAGTTTGT+AGG	+	chr2_2:56939928-56939947	Msa0259680:intron	30.0%
TGTTAGACTTTCATATGACA+AGG	-	chr2_2:56940153-56940172	None:intergenic	30.0%
ATATGAAAGTCTAACATGAG+AGG	+	chr2_2:56940157-56940176	Msa0259680:intron	30.0%
TCAATTTCTGCATATGCATT+CGG	+	chr2_2:56940384-56940403	Msa0259680:intron	30.0%
ACCTGGATAAAAGATTGATT+CGG	+	chr2_2:56940412-56940431	Msa0259680:intron	30.0%
TTCCTATTAGTATATGCCTT+TGG	+	chr2_2:56940497-56940516	Msa0259680:intron	30.0%
TTCCTATTAGTATATGCCTT+TGG	+	chr2_2:56940497-56940516	Msa0259680:intron	30.0%
CATTGAATGAATGATGTATG+TGG	+	chr2_2:56940925-56940944	Msa0259680:intron	30.0%

Showing 1 to 10 of 262 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	56939283	56943857	56939283	ID=Msa0259680;Name=Msa0259680
chr2_2	mRNA	56939283	56943857	56939283	ID=Msa0259680-mRNA-1;Parent=Msa0259680;Name=Msa0259680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=135\|1\|1\|1\|1\|1\|5\|251\|223
chr2_2	exon	56939283	56939453	56939283	ID=Msa0259680-mRNA-1:exon:17220;Parent=Msa0259680-mRNA-1
chr2_2	exon	56941513	56941752	56941513	ID=Msa0259680-mRNA-1:exon:17221;Parent=Msa0259680-mRNA-1
chr2_2	exon	56942643	56942810	56942643	ID=Msa0259680-mRNA-1:exon:17222;Parent=Msa0259680-mRNA-1
chr2_2	exon	56943108	56943221	56943108	ID=Msa0259680-mRNA-1:exon:17223;Parent=Msa0259680-mRNA-1
chr2_2	exon	56943493	56943857	56943493	ID=Msa0259680-mRNA-1:exon:17224;Parent=Msa0259680-mRNA-1
chr2_2	five_prime_UTR	56939283	56939417	56939283	ID=Msa0259680-mRNA-1:five_prime_utr;Parent=Msa0259680-mRNA-1
chr2_2	CDS	56939418	56939453	56939418	ID=Msa0259680-mRNA-1:cds;Parent=Msa0259680-mRNA-1
chr2_2	CDS	56941513	56941752	56941513	ID=Msa0259680-mRNA-1:cds;Parent=Msa0259680-mRNA-1
chr2_2	CDS	56942643	56942810	56942643	ID=Msa0259680-mRNA-1:cds;Parent=Msa0259680-mRNA-1
chr2_2	CDS	56943108	56943221	56943108	ID=Msa0259680-mRNA-1:cds;Parent=Msa0259680-mRNA-1
chr2_2	CDS	56943493	56943606	56943493	ID=Msa0259680-mRNA-1:cds;Parent=Msa0259680-mRNA-1
chr2_2	three_prime_UTR	56943607	56943857	56943607	ID=Msa0259680-mRNA-1:three_prime_utr;Parent=Msa0259680-mRNA-1

Gene Sequence

>Msa0259680

ATGGAGGTTCAAAGTTGGGATTCCCTTCGCAAACAGGCAAGAAAACTTGAAGCTCAGTTGGATGAGCAAATGGTTTTATATCGTAAATTGGTTTCAACGAAAGCTTCTACAAAAGGTGAGGCAACAGAGAGTGATCTGGAGTCTTGGATTGAACGTTTACTTAATCAACTCAAACAAGTAAACTCACAGATGCAGGCTTGGGTGTCCTCTGGTGGGTCTGAAATGGTTTCTCATACACTGACTAGACACCAAGAAATTTATCAAGATCTCACCCAGGAGTTTTATCGGCTCCGGTCTAATCTTAGAGCTAAGCAAGAACACGCTTCACTACTTGATGATTTTAAAGAGCTTGATCGAACAAGATTAGATTTGGAAGAGGGTGGAAGTTCTGAACAGCAAAACCTCCTTAAAGAGCGTGCATCCATCAGCCGCAGTACAGGACAGATGGACACTGTTATTTCACAAGCACAAGCAACACTCGGTGCACTAGTCTTCCAGCGTTCGACTTTTGGTGGGATCAATTCAAAGCTCAGCAACGTGAGCAGTCGCCTCCCAACGGTAAATACTATTCTGTCAGCAATAAAGCGAAAAAAGTCGATGGATACCATTATACTTGCCCTTGTTGGGTCCGTATGCATTTTTCTTATTTTCATCTACTGGCTAACCAAGTAA

Protein sequence

>Msa0259680

MEVQSWDSLRKQARKLEAQLDEQMVLYRKLVSTKASTKGEATESDLESWIERLLNQLKQVNSQMQAWVSSGGSEMVSHTLTRHQEIYQDLTQEFYRLRSNLRAKQEHASLLDDFKELDRTRLDLEEGGSSEQQNLLKERASISRSTGQMDTVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPTVNTILSAIKRKKSMDTIILALVGSVCIFLIFIYWLTK*