AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038870 MtrunA17_Chr1g0202691 96.809 188 6 0 19 206 3 190 1.25e-135 377
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038870 AT4G25670.2 54.054 185 81 3 23 206 1 182 1.08e-49 160
Msa0038870 AT4G25670.1 54.054 185 81 3 23 206 1 182 1.08e-49 160
Msa0038870 AT4G25690.2 51.795 195 73 5 23 206 1 185 3.43e-49 159
Msa0038870 AT4G25690.1 51.795 195 73 5 23 206 1 185 3.43e-49 159
Msa0038870 AT5G52550.1 50.273 183 68 6 38 206 181 354 2.93e-43 148
Msa0038870 AT5G52550.1 73.333 60 16 0 38 97 78 137 1.50e-17 80.1

Find 58 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCTCTCTCATATGTTAT+CGG 0.202578 1_1:+68371954 Msa0038870:five_prime_UTR
AATGGCATAGAGAGAGAAAT+TGG 0.272654 1_1:-68372158 None:intergenic
GATAACATGGCATGTAATAA+AGG 0.286451 1_1:+68373617 Msa0038870:CDS
AGATAGACCACTTGCCGTTT+TGG 0.291490 1_1:-68373997 None:intergenic
AACATGTATATTATTGTAAT+AGG 0.311130 1_1:-68372892 None:intergenic
TAATAATCTTGATTTCTTCA+TGG 0.361966 1_1:+68373919 Msa0038870:CDS
TATGTCGTTATTAAGTTCAA+TGG 0.374544 1_1:+68373595 Msa0038870:intron
TCTCTCATATGTTATCGGTT+TGG 0.388640 1_1:+68371959 Msa0038870:five_prime_UTR
TGCTGCCATCATATCGGAAC+TGG 0.404529 1_1:+68373748 Msa0038870:CDS
AATAATCTTGATTTCTTCAT+GGG 0.406348 1_1:+68373920 Msa0038870:CDS
AAACGAGAAGTGATTGTTAG+TGG 0.410114 1_1:-68372091 None:intergenic
GCTTGCTTTCCTAATCTAGA+TGG 0.412460 1_1:+68373953 Msa0038870:CDS
AGAGGAAGAGAAAATGTAGT+TGG 0.425893 1_1:-68372060 None:intergenic
AGGATAGGATTCTCTTCTAA+TGG 0.433534 1_1:+68374149 Msa0038870:CDS
TCTCTCTATGCCATTCCCTC+AGG 0.434714 1_1:+68372166 Msa0038870:exon
GGCAAGTGGTCTATCTCGTC+CGG 0.448307 1_1:+68374004 Msa0038870:CDS
TACTTCTGCTGCCATCATAT+CGG 0.450688 1_1:+68373742 Msa0038870:CDS
CTCAAATCACCACTCTCATC+AGG 0.457188 1_1:+68372127 Msa0038870:five_prime_UTR
AGACTCGGATGATTCATATA+AGG 0.459137 1_1:+68373868 Msa0038870:CDS
ATAACATGGCATGTAATAAA+GGG 0.468465 1_1:+68373618 Msa0038870:CDS
CATGTGCCACCATCTAGATT+AGG 0.473663 1_1:-68373962 None:intergenic
CACGAACCGCTTTACGAAGC+AGG 0.476420 1_1:+68374046 Msa0038870:CDS
GAAGCAGGTGAAAGATGAGT+TGG 0.480043 1_1:+68373667 Msa0038870:CDS
AGATCAACAGAGAATCTTGT+AGG 0.486420 1_1:-68374076 None:intergenic
GAGGAAGAGAAAATGTAGTT+GGG 0.489801 1_1:-68372059 None:intergenic
ATCTTGATTTCTTCATGGGT+GGG 0.489941 1_1:+68373924 Msa0038870:CDS
GAGAAGTGATTGTTAGTGGT+TGG 0.499250 1_1:-68372087 None:intergenic
TGGTCCGTCACTTCCCAAAA+CGG 0.505701 1_1:+68373983 Msa0038870:CDS
TTGTTAGTGGTTGGATCTAG+AGG 0.515473 1_1:-68372078 None:intergenic
AATCTTGATTTCTTCATGGG+TGG 0.519569 1_1:+68373923 Msa0038870:CDS
CAATAATATACATGTTAAGT+AGG 0.519901 1_1:+68372899 Msa0038870:CDS
CAGAGAATGCAGATGAGGAT+AGG 0.524026 1_1:+68374134 Msa0038870:CDS
AAGAGAAAATGTAGTTGGGT+AGG 0.532815 1_1:-68372055 None:intergenic
AACCGCTTTACGAAGCAGGA+TGG 0.534751 1_1:+68374050 Msa0038870:CDS
ACCGCTTTACGAAGCAGGAT+GGG 0.538753 1_1:+68374051 Msa0038870:CDS
GAGAAAGACAAAGAAGAAGC+AGG 0.540706 1_1:+68373652 Msa0038870:CDS
ATGAAACAAACCTGAGGGAA+TGG 0.542301 1_1:-68372176 None:intergenic
ATTATTATTATAATCATCCC+AGG 0.556888 1_1:-68373903 None:intergenic
CTAATCTAGATGGTGGCACA+TGG 0.572878 1_1:+68373963 Msa0038870:CDS
GCAAGTGGTCTATCTCGTCC+GGG 0.576300 1_1:+68374005 Msa0038870:CDS
TCCCATCCTGCTTCGTAAAG+CGG 0.587174 1_1:-68374052 None:intergenic
CATCTGCATTCTCTGCAATG+TGG 0.593120 1_1:-68374126 None:intergenic
ATAAGGTTGAGTGCAAGACC+TGG 0.599344 1_1:+68373885 Msa0038870:CDS
ACAACAAAGACTTGATGAAG+AGG 0.600172 1_1:+68373799 Msa0038870:CDS
ATTAAGTTCAATGGATAACA+TGG 0.608143 1_1:+68373604 Msa0038870:intron
TGCTTTCCTAATCTAGATGG+TGG 0.608683 1_1:+68373956 Msa0038870:CDS
TCACTTCCCAAAACGGCAAG+TGG 0.610829 1_1:+68373990 Msa0038870:CDS
CATTGCAGAGAATGCAGATG+AGG 0.616435 1_1:+68374129 Msa0038870:CDS
AAGTAGAACATGCAGAGCGA+CGG 0.623440 1_1:-68373840 None:intergenic
TGAAGAGGGTGCTGCAATTG+CGG 0.628142 1_1:+68373814 Msa0038870:CDS
CCGATAACATATGAGAGAGG+AGG 0.629291 1_1:-68371954 None:intergenic
TAAGGTTGAGTGCAAGACCT+GGG 0.633266 1_1:+68373886 Msa0038870:CDS
CAACAAAGACTTGATGAAGA+GGG 0.641834 1_1:+68373800 Msa0038870:CDS
TGTTCTACTTGATGAAGACT+CGG 0.648329 1_1:+68373853 Msa0038870:CDS
GTAATAGGATCTGCTTGCAG+TGG 0.648746 1_1:-68372877 None:intergenic
AAACCGATAACATATGAGAG+AGG 0.686041 1_1:-68371957 None:intergenic
GATGAGAGTGGTGATTTGAG+AGG 0.706629 1_1:-68372124 None:intergenic
GAGACAAGACCTGATGAGAG+TGG 0.721166 1_1:-68372136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAAAAACAAAACAAAAA+AGG - chr1_1:68372227-68372246 None:intergenic 15.0%
!!! AATTTTGATTTGATTGTATT+TGG + chr1_1:68372256-68372275 Msa0038870:intron 15.0%
!!! TGTGTTTTTTTTTATGAATT+AGG + chr1_1:68372406-68372425 Msa0038870:intron 15.0%
!! AACATGTATATTATTGTAAT+AGG - chr1_1:68372895-68372914 None:intergenic 15.0%
!! TATTATTAGCATAATAGTTT+AGG + chr1_1:68373490-68373509 Msa0038870:intron 15.0%
!! ATTATTAGCATAATAGTTTA+GGG + chr1_1:68373491-68373510 Msa0038870:intron 15.0%
!! AGTTAAAAACAAAACAAAAA+AGG - chr1_1:68372227-68372246 None:intergenic 15.0%
!!! AATTTTGATTTGATTGTATT+TGG + chr1_1:68372256-68372275 Msa0038870:intron 15.0%
!!! TGTGTTTTTTTTTATGAATT+AGG + chr1_1:68372406-68372425 Msa0038870:intron 15.0%
!! AACATGTATATTATTGTAAT+AGG - chr1_1:68372895-68372914 None:intergenic 15.0%
!! TATTATTAGCATAATAGTTT+AGG + chr1_1:68373490-68373509 Msa0038870:intron 15.0%
!! ATTATTAGCATAATAGTTTA+GGG + chr1_1:68373491-68373510 Msa0038870:intron 15.0%
!!! ATCTTGTGATTTTTGTAATT+TGG + chr1_1:68372350-68372369 Msa0038870:intron 20.0%
!!! TCTTGTGATTTTTGTAATTT+GGG + chr1_1:68372351-68372370 Msa0038870:intron 20.0%
!!! GTTTTTTTTTATGAATTAGG+TGG + chr1_1:68372409-68372428 Msa0038870:intron 20.0%
!!! TCGATGTTTTTGTTATTTTT+AGG + chr1_1:68372446-68372465 Msa0038870:intron 20.0%
!!! CGATGTTTTTGTTATTTTTA+GGG + chr1_1:68372447-68372466 Msa0038870:intron 20.0%
!!! GTTCAATTTTGATATTTGTT+AGG + chr1_1:68372662-68372681 Msa0038870:intron 20.0%
!! CAATAATATACATGTTAAGT+AGG + chr1_1:68372899-68372918 Msa0038870:CDS 20.0%
!! TACTCTTAAATATCATTTGA+TGG + chr1_1:68373031-68373050 Msa0038870:intron 20.0%
!!! TTTAAAGTAATTTTCGTTTG+TGG + chr1_1:68373059-68373078 Msa0038870:intron 20.0%
!!! ACATTAAAATTCACTTTTAG+AGG - chr1_1:68373107-68373126 None:intergenic 20.0%
!! AAGATATACAATTCATTTAC+AGG - chr1_1:68373136-68373155 None:intergenic 20.0%
!! TTATTAGCATAATAGTTTAG+GGG + chr1_1:68373492-68373511 Msa0038870:intron 20.0%
!! ATTATTATTATAATCATCCC+AGG - chr1_1:68373906-68373925 None:intergenic 20.0%
!! TAATAATCTTGATTTCTTCA+TGG + chr1_1:68373919-68373938 Msa0038870:CDS 20.0%
!! AATAATCTTGATTTCTTCAT+GGG + chr1_1:68373920-68373939 Msa0038870:CDS 20.0%
!!! ATCTTGTGATTTTTGTAATT+TGG + chr1_1:68372350-68372369 Msa0038870:intron 20.0%
!!! TCTTGTGATTTTTGTAATTT+GGG + chr1_1:68372351-68372370 Msa0038870:intron 20.0%
!!! GTTTTTTTTTATGAATTAGG+TGG + chr1_1:68372409-68372428 Msa0038870:intron 20.0%
!!! TCGATGTTTTTGTTATTTTT+AGG + chr1_1:68372446-68372465 Msa0038870:intron 20.0%
!!! CGATGTTTTTGTTATTTTTA+GGG + chr1_1:68372447-68372466 Msa0038870:intron 20.0%
!!! GTTCAATTTTGATATTTGTT+AGG + chr1_1:68372662-68372681 Msa0038870:intron 20.0%
!! CAATAATATACATGTTAAGT+AGG + chr1_1:68372899-68372918 Msa0038870:CDS 20.0%
!! TACTCTTAAATATCATTTGA+TGG + chr1_1:68373031-68373050 Msa0038870:intron 20.0%
!!! TTTAAAGTAATTTTCGTTTG+TGG + chr1_1:68373059-68373078 Msa0038870:intron 20.0%
!!! ACATTAAAATTCACTTTTAG+AGG - chr1_1:68373107-68373126 None:intergenic 20.0%
!! AAGATATACAATTCATTTAC+AGG - chr1_1:68373136-68373155 None:intergenic 20.0%
!! TTATTAGCATAATAGTTTAG+GGG + chr1_1:68373492-68373511 Msa0038870:intron 20.0%
!! ATTATTATTATAATCATCCC+AGG - chr1_1:68373906-68373925 None:intergenic 20.0%
!! TAATAATCTTGATTTCTTCA+TGG + chr1_1:68373919-68373938 Msa0038870:CDS 20.0%
!! AATAATCTTGATTTCTTCAT+GGG + chr1_1:68373920-68373939 Msa0038870:CDS 20.0%
! ACAAAAAAGGCAAAATTTGA+AGG - chr1_1:68372214-68372233 None:intergenic 25.0%
!! CTTGTGATTTTTGTAATTTG+GGG + chr1_1:68372352-68372371 Msa0038870:intron 25.0%
! TCAAGCTTACTGAATATAAT+TGG + chr1_1:68372546-68372565 Msa0038870:intron 25.0%
! ACTTAACATGAAATGTTAAC+AGG - chr1_1:68372731-68372750 None:intergenic 25.0%
! AATAATGCACAGATATATAG+AGG + chr1_1:68372932-68372951 Msa0038870:intron 25.0%
! TACAATAACAGACAATACTT+GGG - chr1_1:68372995-68373014 None:intergenic 25.0%
! TTACAATAACAGACAATACT+TGG - chr1_1:68372996-68373015 None:intergenic 25.0%
! GAAAATGTATACAACTCTAT+AGG + chr1_1:68373527-68373546 Msa0038870:intron 25.0%
! TATGTCGTTATTAAGTTCAA+TGG + chr1_1:68373595-68373614 Msa0038870:intron 25.0%
! ATTAAGTTCAATGGATAACA+TGG + chr1_1:68373604-68373623 Msa0038870:intron 25.0%
! ATAACATGGCATGTAATAAA+GGG + chr1_1:68373618-68373637 Msa0038870:CDS 25.0%
! ACAAAAAAGGCAAAATTTGA+AGG - chr1_1:68372214-68372233 None:intergenic 25.0%
!! CTTGTGATTTTTGTAATTTG+GGG + chr1_1:68372352-68372371 Msa0038870:intron 25.0%
! TCAAGCTTACTGAATATAAT+TGG + chr1_1:68372546-68372565 Msa0038870:intron 25.0%
! ACTTAACATGAAATGTTAAC+AGG - chr1_1:68372731-68372750 None:intergenic 25.0%
! AATAATGCACAGATATATAG+AGG + chr1_1:68372932-68372951 Msa0038870:intron 25.0%
! TACAATAACAGACAATACTT+GGG - chr1_1:68372995-68373014 None:intergenic 25.0%
! TTACAATAACAGACAATACT+TGG - chr1_1:68372996-68373015 None:intergenic 25.0%
! GAAAATGTATACAACTCTAT+AGG + chr1_1:68373527-68373546 Msa0038870:intron 25.0%
! TATGTCGTTATTAAGTTCAA+TGG + chr1_1:68373595-68373614 Msa0038870:intron 25.0%
! ATTAAGTTCAATGGATAACA+TGG + chr1_1:68373604-68373623 Msa0038870:intron 25.0%
! ATAACATGGCATGTAATAAA+GGG + chr1_1:68373618-68373637 Msa0038870:CDS 25.0%
GATTTGATTGTATTTGGATC+TGG + chr1_1:68372262-68372281 Msa0038870:intron 30.0%
AATTCGAGTGATTCAATTTG+AGG + chr1_1:68372296-68372315 Msa0038870:intron 30.0%
TTTGTTGCAAATAGATTTGC+AGG + chr1_1:68372475-68372494 Msa0038870:intron 30.0%
AGATTTGCAGGAATGAAAAT+TGG + chr1_1:68372487-68372506 Msa0038870:intron 30.0%
GATTTGCAGGAATGAAAATT+GGG + chr1_1:68372488-68372507 Msa0038870:intron 30.0%
TTGTTGTAAGTTAGGAAGAA+TGG + chr1_1:68373296-68373315 Msa0038870:intron 30.0%
TGTTGTAAGTTAGGAAGAAT+GGG + chr1_1:68373297-68373316 Msa0038870:intron 30.0%
ATTGCATAGTTCGTAAAATG+AGG + chr1_1:68373388-68373407 Msa0038870:intron 30.0%
GATAACATGGCATGTAATAA+AGG + chr1_1:68373617-68373636 Msa0038870:CDS 30.0%
AAGCTGAAAAGAAAAAGAGA+CGG + chr1_1:68373702-68373721 Msa0038870:CDS 30.0%
GATTTGATTGTATTTGGATC+TGG + chr1_1:68372262-68372281 Msa0038870:intron 30.0%
AATTCGAGTGATTCAATTTG+AGG + chr1_1:68372296-68372315 Msa0038870:intron 30.0%
TTTGTTGCAAATAGATTTGC+AGG + chr1_1:68372475-68372494 Msa0038870:intron 30.0%
AGATTTGCAGGAATGAAAAT+TGG + chr1_1:68372487-68372506 Msa0038870:intron 30.0%
GATTTGCAGGAATGAAAATT+GGG + chr1_1:68372488-68372507 Msa0038870:intron 30.0%
TTGTTGTAAGTTAGGAAGAA+TGG + chr1_1:68373296-68373315 Msa0038870:intron 30.0%
TGTTGTAAGTTAGGAAGAAT+GGG + chr1_1:68373297-68373316 Msa0038870:intron 30.0%
ATTGCATAGTTCGTAAAATG+AGG + chr1_1:68373388-68373407 Msa0038870:intron 30.0%
GATAACATGGCATGTAATAA+AGG + chr1_1:68373617-68373636 Msa0038870:CDS 30.0%
AAGCTGAAAAGAAAAAGAGA+CGG + chr1_1:68373702-68373721 Msa0038870:CDS 30.0%
AAACCGATAACATATGAGAG+AGG - chr1_1:68371960-68371979 None:intergenic 35.0%
! TCTCTCATATGTTATCGGTT+TGG + chr1_1:68371959-68371978 Msa0038870:five_prime_UTR 35.0%
AAGAGAAAATGTAGTTGGGT+AGG - chr1_1:68372058-68372077 None:intergenic 35.0%
GAGGAAGAGAAAATGTAGTT+GGG - chr1_1:68372062-68372081 None:intergenic 35.0%
AGAGGAAGAGAAAATGTAGT+TGG - chr1_1:68372063-68372082 None:intergenic 35.0%
AAACGAGAAGTGATTGTTAG+TGG - chr1_1:68372094-68372113 None:intergenic 35.0%
AATGGCATAGAGAGAGAAAT+TGG - chr1_1:68372161-68372180 None:intergenic 35.0%
GATGAATGAAACAAACCTGA+GGG - chr1_1:68372184-68372203 None:intergenic 35.0%
TGATGAATGAAACAAACCTG+AGG - chr1_1:68372185-68372204 None:intergenic 35.0%
TGAATTAGGTGGATCTGATT+AGG + chr1_1:68372420-68372439 Msa0038870:intron 35.0%
GAATTAGGTGGATCTGATTA+GGG + chr1_1:68372421-68372440 Msa0038870:intron 35.0%
TTGTTAGGTGAGTTAGATGT+TGG + chr1_1:68372677-68372696 Msa0038870:intron 35.0%
! GTACTAGTCTATTGTACACT+TGG + chr1_1:68372749-68372768 Msa0038870:intron 35.0%
TAGTCTATTGTACACTTGGT+TGG + chr1_1:68372753-68372772 Msa0038870:intron 35.0%
! TAATTTTCGTTTGTGGTGAC+TGG + chr1_1:68373066-68373085 Msa0038870:intron 35.0%
TTAAGGGGAAAAACTCAAAG+TGG - chr1_1:68373169-68373188 None:intergenic 35.0%
! TGCAAGTGTTGTTGTAAGTT+AGG + chr1_1:68373288-68373307 Msa0038870:intron 35.0%
GTTGTAAGTTAGGAAGAATG+GGG + chr1_1:68373298-68373317 Msa0038870:intron 35.0%
! TAGGAGTTTGCTTGAAGAAT+AGG + chr1_1:68373546-68373565 Msa0038870:intron 35.0%
! AGGAGTTTGCTTGAAGAATA+GGG + chr1_1:68373547-68373566 Msa0038870:intron 35.0%
TGAAAAGAAAAAGAGACGGT+TGG + chr1_1:68373706-68373725 Msa0038870:CDS 35.0%
! TTTTTCCAGTTCCGATATGA+TGG - chr1_1:68373756-68373775 None:intergenic 35.0%
ACAACAAAGACTTGATGAAG+AGG + chr1_1:68373799-68373818 Msa0038870:CDS 35.0%
CAACAAAGACTTGATGAAGA+GGG + chr1_1:68373800-68373819 Msa0038870:CDS 35.0%
TGTTCTACTTGATGAAGACT+CGG + chr1_1:68373853-68373872 Msa0038870:CDS 35.0%
AGACTCGGATGATTCATATA+AGG + chr1_1:68373868-68373887 Msa0038870:CDS 35.0%
AATCTTGATTTCTTCATGGG+TGG + chr1_1:68373923-68373942 Msa0038870:CDS 35.0%
ATCTTGATTTCTTCATGGGT+GGG + chr1_1:68373924-68373943 Msa0038870:CDS 35.0%
! TCGTGCACATTGTTTTCAAA+AGG - chr1_1:68374031-68374050 None:intergenic 35.0%
AGATCAACAGAGAATCTTGT+AGG - chr1_1:68374079-68374098 None:intergenic 35.0%
AAACCGATAACATATGAGAG+AGG - chr1_1:68371960-68371979 None:intergenic 35.0%
! TCTCTCATATGTTATCGGTT+TGG + chr1_1:68371959-68371978 Msa0038870:five_prime_UTR 35.0%
AAGAGAAAATGTAGTTGGGT+AGG - chr1_1:68372058-68372077 None:intergenic 35.0%
GAGGAAGAGAAAATGTAGTT+GGG - chr1_1:68372062-68372081 None:intergenic 35.0%
AGAGGAAGAGAAAATGTAGT+TGG - chr1_1:68372063-68372082 None:intergenic 35.0%
AAACGAGAAGTGATTGTTAG+TGG - chr1_1:68372094-68372113 None:intergenic 35.0%
AATGGCATAGAGAGAGAAAT+TGG - chr1_1:68372161-68372180 None:intergenic 35.0%
GATGAATGAAACAAACCTGA+GGG - chr1_1:68372184-68372203 None:intergenic 35.0%
TGATGAATGAAACAAACCTG+AGG - chr1_1:68372185-68372204 None:intergenic 35.0%
TGAATTAGGTGGATCTGATT+AGG + chr1_1:68372420-68372439 Msa0038870:intron 35.0%
GAATTAGGTGGATCTGATTA+GGG + chr1_1:68372421-68372440 Msa0038870:intron 35.0%
TTGTTAGGTGAGTTAGATGT+TGG + chr1_1:68372677-68372696 Msa0038870:intron 35.0%
! GTACTAGTCTATTGTACACT+TGG + chr1_1:68372749-68372768 Msa0038870:intron 35.0%
TAGTCTATTGTACACTTGGT+TGG + chr1_1:68372753-68372772 Msa0038870:intron 35.0%
! TAATTTTCGTTTGTGGTGAC+TGG + chr1_1:68373066-68373085 Msa0038870:intron 35.0%
TTAAGGGGAAAAACTCAAAG+TGG - chr1_1:68373169-68373188 None:intergenic 35.0%
! TGCAAGTGTTGTTGTAAGTT+AGG + chr1_1:68373288-68373307 Msa0038870:intron 35.0%
GTTGTAAGTTAGGAAGAATG+GGG + chr1_1:68373298-68373317 Msa0038870:intron 35.0%
! TAGGAGTTTGCTTGAAGAAT+AGG + chr1_1:68373546-68373565 Msa0038870:intron 35.0%
! AGGAGTTTGCTTGAAGAATA+GGG + chr1_1:68373547-68373566 Msa0038870:intron 35.0%
TGAAAAGAAAAAGAGACGGT+TGG + chr1_1:68373706-68373725 Msa0038870:CDS 35.0%
! TTTTTCCAGTTCCGATATGA+TGG - chr1_1:68373756-68373775 None:intergenic 35.0%
ACAACAAAGACTTGATGAAG+AGG + chr1_1:68373799-68373818 Msa0038870:CDS 35.0%
CAACAAAGACTTGATGAAGA+GGG + chr1_1:68373800-68373819 Msa0038870:CDS 35.0%
TGTTCTACTTGATGAAGACT+CGG + chr1_1:68373853-68373872 Msa0038870:CDS 35.0%
AGACTCGGATGATTCATATA+AGG + chr1_1:68373868-68373887 Msa0038870:CDS 35.0%
AATCTTGATTTCTTCATGGG+TGG + chr1_1:68373923-68373942 Msa0038870:CDS 35.0%
ATCTTGATTTCTTCATGGGT+GGG + chr1_1:68373924-68373943 Msa0038870:CDS 35.0%
! TCGTGCACATTGTTTTCAAA+AGG - chr1_1:68374031-68374050 None:intergenic 35.0%
AGATCAACAGAGAATCTTGT+AGG - chr1_1:68374079-68374098 None:intergenic 35.0%
CCTCCTCTCTCATATGTTAT+CGG + chr1_1:68371954-68371973 Msa0038870:five_prime_UTR 40.0%
TTGTTAGTGGTTGGATCTAG+AGG - chr1_1:68372081-68372100 None:intergenic 40.0%
GAGAAGTGATTGTTAGTGGT+TGG - chr1_1:68372090-68372109 None:intergenic 40.0%
ATGAAACAAACCTGAGGGAA+TGG - chr1_1:68372179-68372198 None:intergenic 40.0%
! TACACTTGGTTGGTTAAACC+AGG + chr1_1:68372763-68372782 Msa0038870:intron 40.0%
ATGAACATGTCAGATCAACC+TGG - chr1_1:68372784-68372803 None:intergenic 40.0%
! TTTTCCCCTTAAACTGCAGT+TGG + chr1_1:68373177-68373196 Msa0038870:intron 40.0%
TTTCCCCTTAAACTGCAGTT+GGG + chr1_1:68373178-68373197 Msa0038870:intron 40.0%
TAACAGTATTGCAGACCTGT+TGG + chr1_1:68373246-68373265 Msa0038870:intron 40.0%
GAGAAAGACAAAGAAGAAGC+AGG + chr1_1:68373652-68373671 Msa0038870:CDS 40.0%
TACTTCTGCTGCCATCATAT+CGG + chr1_1:68373742-68373761 Msa0038870:CDS 40.0%
GCTTGCTTTCCTAATCTAGA+TGG + chr1_1:68373953-68373972 Msa0038870:CDS 40.0%
TGCTTTCCTAATCTAGATGG+TGG + chr1_1:68373956-68373975 Msa0038870:CDS 40.0%
! CACATTGTTTTCAAAAGGCC+CGG - chr1_1:68374026-68374045 None:intergenic 40.0%
CCTCCTCTCTCATATGTTAT+CGG + chr1_1:68371954-68371973 Msa0038870:five_prime_UTR 40.0%
TTGTTAGTGGTTGGATCTAG+AGG - chr1_1:68372081-68372100 None:intergenic 40.0%
GAGAAGTGATTGTTAGTGGT+TGG - chr1_1:68372090-68372109 None:intergenic 40.0%
ATGAAACAAACCTGAGGGAA+TGG - chr1_1:68372179-68372198 None:intergenic 40.0%
! TACACTTGGTTGGTTAAACC+AGG + chr1_1:68372763-68372782 Msa0038870:intron 40.0%
ATGAACATGTCAGATCAACC+TGG - chr1_1:68372784-68372803 None:intergenic 40.0%
! TTTTCCCCTTAAACTGCAGT+TGG + chr1_1:68373177-68373196 Msa0038870:intron 40.0%
TTTCCCCTTAAACTGCAGTT+GGG + chr1_1:68373178-68373197 Msa0038870:intron 40.0%
TAACAGTATTGCAGACCTGT+TGG + chr1_1:68373246-68373265 Msa0038870:intron 40.0%
GAGAAAGACAAAGAAGAAGC+AGG + chr1_1:68373652-68373671 Msa0038870:CDS 40.0%
TACTTCTGCTGCCATCATAT+CGG + chr1_1:68373742-68373761 Msa0038870:CDS 40.0%
GCTTGCTTTCCTAATCTAGA+TGG + chr1_1:68373953-68373972 Msa0038870:CDS 40.0%
TGCTTTCCTAATCTAGATGG+TGG + chr1_1:68373956-68373975 Msa0038870:CDS 40.0%
! CACATTGTTTTCAAAAGGCC+CGG - chr1_1:68374026-68374045 None:intergenic 40.0%
CCGATAACATATGAGAGAGG+AGG - chr1_1:68371957-68371976 None:intergenic 45.0%
GATGAGAGTGGTGATTTGAG+AGG - chr1_1:68372127-68372146 None:intergenic 45.0%
CTCAAATCACCACTCTCATC+AGG + chr1_1:68372127-68372146 Msa0038870:five_prime_UTR 45.0%
GTAATAGGATCTGCTTGCAG+TGG - chr1_1:68372880-68372899 None:intergenic 45.0%
CTTCCCAACTGCAGTTTAAG+GGG - chr1_1:68373184-68373203 None:intergenic 45.0%
CCTTCCCAACTGCAGTTTAA+GGG - chr1_1:68373185-68373204 None:intergenic 45.0%
CCTTAAACTGCAGTTGGGAA+GGG + chr1_1:68373183-68373202 Msa0038870:intron 45.0%
! TGTCTCCTGTCGTTTCTTTC+TGG + chr1_1:68373364-68373383 Msa0038870:intron 45.0%
! GTCTCCTGTCGTTTCTTTCT+GGG + chr1_1:68373365-68373384 Msa0038870:intron 45.0%
CAATCCCAGAAAGAAACGAC+AGG - chr1_1:68373372-68373391 None:intergenic 45.0%
GTATTCCTACAGACCTGAGT+GGG + chr1_1:68373410-68373429 Msa0038870:intron 45.0%
GAAGCAGGTGAAAGATGAGT+TGG + chr1_1:68373667-68373686 Msa0038870:CDS 45.0%
AAGTAGAACATGCAGAGCGA+CGG - chr1_1:68373843-68373862 None:intergenic 45.0%
ATAAGGTTGAGTGCAAGACC+TGG + chr1_1:68373885-68373904 Msa0038870:CDS 45.0%
TAAGGTTGAGTGCAAGACCT+GGG + chr1_1:68373886-68373905 Msa0038870:CDS 45.0%
CATGTGCCACCATCTAGATT+AGG - chr1_1:68373965-68373984 None:intergenic 45.0%
! CTAATCTAGATGGTGGCACA+TGG + chr1_1:68373963-68373982 Msa0038870:CDS 45.0%
!!! GATAGACCACTTGCCGTTTT+GGG - chr1_1:68373999-68374018 None:intergenic 45.0%
!! AGATAGACCACTTGCCGTTT+TGG - chr1_1:68374000-68374019 None:intergenic 45.0%
CATCTGCATTCTCTGCAATG+TGG - chr1_1:68374129-68374148 None:intergenic 45.0%
CATTGCAGAGAATGCAGATG+AGG + chr1_1:68374129-68374148 Msa0038870:CDS 45.0%
CAGAGAATGCAGATGAGGAT+AGG + chr1_1:68374134-68374153 Msa0038870:CDS 45.0%
CCGATAACATATGAGAGAGG+AGG - chr1_1:68371957-68371976 None:intergenic 45.0%
GATGAGAGTGGTGATTTGAG+AGG - chr1_1:68372127-68372146 None:intergenic 45.0%
CTCAAATCACCACTCTCATC+AGG + chr1_1:68372127-68372146 Msa0038870:five_prime_UTR 45.0%
GTAATAGGATCTGCTTGCAG+TGG - chr1_1:68372880-68372899 None:intergenic 45.0%
CTTCCCAACTGCAGTTTAAG+GGG - chr1_1:68373184-68373203 None:intergenic 45.0%
CCTTCCCAACTGCAGTTTAA+GGG - chr1_1:68373185-68373204 None:intergenic 45.0%
CCTTAAACTGCAGTTGGGAA+GGG + chr1_1:68373183-68373202 Msa0038870:intron 45.0%
! TGTCTCCTGTCGTTTCTTTC+TGG + chr1_1:68373364-68373383 Msa0038870:intron 45.0%
! GTCTCCTGTCGTTTCTTTCT+GGG + chr1_1:68373365-68373384 Msa0038870:intron 45.0%
CAATCCCAGAAAGAAACGAC+AGG - chr1_1:68373372-68373391 None:intergenic 45.0%
GTATTCCTACAGACCTGAGT+GGG + chr1_1:68373410-68373429 Msa0038870:intron 45.0%
GAAGCAGGTGAAAGATGAGT+TGG + chr1_1:68373667-68373686 Msa0038870:CDS 45.0%
AAGTAGAACATGCAGAGCGA+CGG - chr1_1:68373843-68373862 None:intergenic 45.0%
ATAAGGTTGAGTGCAAGACC+TGG + chr1_1:68373885-68373904 Msa0038870:CDS 45.0%
TAAGGTTGAGTGCAAGACCT+GGG + chr1_1:68373886-68373905 Msa0038870:CDS 45.0%
CATGTGCCACCATCTAGATT+AGG - chr1_1:68373965-68373984 None:intergenic 45.0%
! CTAATCTAGATGGTGGCACA+TGG + chr1_1:68373963-68373982 Msa0038870:CDS 45.0%
!!! GATAGACCACTTGCCGTTTT+GGG - chr1_1:68373999-68374018 None:intergenic 45.0%
!! AGATAGACCACTTGCCGTTT+TGG - chr1_1:68374000-68374019 None:intergenic 45.0%
CATCTGCATTCTCTGCAATG+TGG - chr1_1:68374129-68374148 None:intergenic 45.0%
CATTGCAGAGAATGCAGATG+AGG + chr1_1:68374129-68374148 Msa0038870:CDS 45.0%
CAGAGAATGCAGATGAGGAT+AGG + chr1_1:68374134-68374153 Msa0038870:CDS 45.0%
!!! AATTTGAAAATTTTATATTT+TGG + chr1_1:68372320-68372339 Msa0038870:intron 5.0%
!!! ATTTGAAAATTTTATATTTT+GGG + chr1_1:68372321-68372340 Msa0038870:intron 5.0%
!!! AATTTGAAAATTTTATATTT+TGG + chr1_1:68372320-68372339 Msa0038870:intron 5.0%
!!! ATTTGAAAATTTTATATTTT+GGG + chr1_1:68372321-68372340 Msa0038870:intron 5.0%
GAGACAAGACCTGATGAGAG+TGG - chr1_1:68372139-68372158 None:intergenic 50.0%
TCTCTCTATGCCATTCCCTC+AGG + chr1_1:68372166-68372185 Msa0038870:exon 50.0%
CCCTTAAACTGCAGTTGGGA+AGG + chr1_1:68373182-68373201 Msa0038870:intron 50.0%
CCCTTCCCAACTGCAGTTTA+AGG - chr1_1:68373186-68373205 None:intergenic 50.0%
!!! TGGAGTCGGAGTGTTGGTTT+TGG + chr1_1:68373211-68373230 Msa0038870:intron 50.0%
!!! TGCAGACCTGTTGGCCTTTT+CGG + chr1_1:68373255-68373274 Msa0038870:intron 50.0%
AGTTAGGAAGAATGGGGCCA+AGG + chr1_1:68373304-68373323 Msa0038870:intron 50.0%
GTTAGGAAGAATGGGGCCAA+GGG + chr1_1:68373305-68373324 Msa0038870:intron 50.0%
GCACTCTTAGATCCATCCCT+TGG - chr1_1:68373324-68373343 None:intergenic 50.0%
GGTATTCCTACAGACCTGAG+TGG + chr1_1:68373409-68373428 Msa0038870:intron 50.0%
TGCTGCCATCATATCGGAAC+TGG + chr1_1:68373748-68373767 Msa0038870:CDS 50.0%
!! TGAAGAGGGTGCTGCAATTG+CGG + chr1_1:68373814-68373833 Msa0038870:CDS 50.0%
TGGTCCGTCACTTCCCAAAA+CGG + chr1_1:68373983-68374002 Msa0038870:CDS 50.0%
!!! CTTGCCGTTTTGGGAAGTGA+CGG - chr1_1:68373990-68374009 None:intergenic 50.0%
TCACTTCCCAAAACGGCAAG+TGG + chr1_1:68373990-68374009 Msa0038870:CDS 50.0%
AACCGCTTTACGAAGCAGGA+TGG + chr1_1:68374050-68374069 Msa0038870:CDS 50.0%
ACCGCTTTACGAAGCAGGAT+GGG + chr1_1:68374051-68374070 Msa0038870:CDS 50.0%
TCCCATCCTGCTTCGTAAAG+CGG - chr1_1:68374055-68374074 None:intergenic 50.0%
GAGACAAGACCTGATGAGAG+TGG - chr1_1:68372139-68372158 None:intergenic 50.0%
TCTCTCTATGCCATTCCCTC+AGG + chr1_1:68372166-68372185 Msa0038870:exon 50.0%
CCCTTAAACTGCAGTTGGGA+AGG + chr1_1:68373182-68373201 Msa0038870:intron 50.0%
CCCTTCCCAACTGCAGTTTA+AGG - chr1_1:68373186-68373205 None:intergenic 50.0%
!!! TGGAGTCGGAGTGTTGGTTT+TGG + chr1_1:68373211-68373230 Msa0038870:intron 50.0%
!!! TGCAGACCTGTTGGCCTTTT+CGG + chr1_1:68373255-68373274 Msa0038870:intron 50.0%
AGTTAGGAAGAATGGGGCCA+AGG + chr1_1:68373304-68373323 Msa0038870:intron 50.0%
GTTAGGAAGAATGGGGCCAA+GGG + chr1_1:68373305-68373324 Msa0038870:intron 50.0%
GCACTCTTAGATCCATCCCT+TGG - chr1_1:68373324-68373343 None:intergenic 50.0%
GGTATTCCTACAGACCTGAG+TGG + chr1_1:68373409-68373428 Msa0038870:intron 50.0%
TGCTGCCATCATATCGGAAC+TGG + chr1_1:68373748-68373767 Msa0038870:CDS 50.0%
!! TGAAGAGGGTGCTGCAATTG+CGG + chr1_1:68373814-68373833 Msa0038870:CDS 50.0%
TGGTCCGTCACTTCCCAAAA+CGG + chr1_1:68373983-68374002 Msa0038870:CDS 50.0%
!!! CTTGCCGTTTTGGGAAGTGA+CGG - chr1_1:68373990-68374009 None:intergenic 50.0%
TCACTTCCCAAAACGGCAAG+TGG + chr1_1:68373990-68374009 Msa0038870:CDS 50.0%
AACCGCTTTACGAAGCAGGA+TGG + chr1_1:68374050-68374069 Msa0038870:CDS 50.0%
ACCGCTTTACGAAGCAGGAT+GGG + chr1_1:68374051-68374070 Msa0038870:CDS 50.0%
TCCCATCCTGCTTCGTAAAG+CGG - chr1_1:68374055-68374074 None:intergenic 50.0%
! TGCAGTTGGGAAGGGTGTAC+TGG + chr1_1:68373191-68373210 Msa0038870:intron 55.0%
! TGGGAAGGGTGTACTGGAGT+CGG + chr1_1:68373197-68373216 Msa0038870:intron 55.0%
GTGTACTGGAGTCGGAGTGT+TGG + chr1_1:68373205-68373224 Msa0038870:intron 55.0%
!!! GCAGACCTGTTGGCCTTTTC+GGG + chr1_1:68373256-68373275 Msa0038870:intron 55.0%
!!! ACCTGTTGGCCTTTTCGGGA+TGG + chr1_1:68373260-68373279 Msa0038870:intron 55.0%
!!! CCTGTTGGCCTTTTCGGGAT+GGG + chr1_1:68373261-68373280 Msa0038870:intron 55.0%
CTACACCCACTCAGGTCTGT+AGG - chr1_1:68373418-68373437 None:intergenic 55.0%
ACAGACCTGAGTGGGTGTAG+TGG + chr1_1:68373418-68373437 Msa0038870:intron 55.0%
ACCTGAGTGGGTGTAGTGGT+TGG + chr1_1:68373422-68373441 Msa0038870:intron 55.0%
ACCAACCACTACACCCACTC+AGG - chr1_1:68373426-68373445 None:intergenic 55.0%
GGCAAGTGGTCTATCTCGTC+CGG + chr1_1:68374004-68374023 Msa0038870:CDS 55.0%
GCAAGTGGTCTATCTCGTCC+GGG + chr1_1:68374005-68374024 Msa0038870:CDS 55.0%
CACGAACCGCTTTACGAAGC+AGG + chr1_1:68374046-68374065 Msa0038870:CDS 55.0%
! TGCAGTTGGGAAGGGTGTAC+TGG + chr1_1:68373191-68373210 Msa0038870:intron 55.0%
! TGGGAAGGGTGTACTGGAGT+CGG + chr1_1:68373197-68373216 Msa0038870:intron 55.0%
GTGTACTGGAGTCGGAGTGT+TGG + chr1_1:68373205-68373224 Msa0038870:intron 55.0%
!!! GCAGACCTGTTGGCCTTTTC+GGG + chr1_1:68373256-68373275 Msa0038870:intron 55.0%
!!! ACCTGTTGGCCTTTTCGGGA+TGG + chr1_1:68373260-68373279 Msa0038870:intron 55.0%
!!! CCTGTTGGCCTTTTCGGGAT+GGG + chr1_1:68373261-68373280 Msa0038870:intron 55.0%
CTACACCCACTCAGGTCTGT+AGG - chr1_1:68373418-68373437 None:intergenic 55.0%
ACAGACCTGAGTGGGTGTAG+TGG + chr1_1:68373418-68373437 Msa0038870:intron 55.0%
ACCTGAGTGGGTGTAGTGGT+TGG + chr1_1:68373422-68373441 Msa0038870:intron 55.0%
ACCAACCACTACACCCACTC+AGG - chr1_1:68373426-68373445 None:intergenic 55.0%
GGCAAGTGGTCTATCTCGTC+CGG + chr1_1:68374004-68374023 Msa0038870:CDS 55.0%
GCAAGTGGTCTATCTCGTCC+GGG + chr1_1:68374005-68374024 Msa0038870:CDS 55.0%
CACGAACCGCTTTACGAAGC+AGG + chr1_1:68374046-68374065 Msa0038870:CDS 55.0%
CCCATCCCGAAAAGGCCAAC+AGG - chr1_1:68373264-68373283 None:intergenic 60.0%
TGCACTCGCCCATCCCGAAA+AGG - chr1_1:68373272-68373291 None:intergenic 60.0%
GGAAGAATGGGGCCAAGGGA+TGG + chr1_1:68373309-68373328 Msa0038870:intron 60.0%
CCCATCCCGAAAAGGCCAAC+AGG - chr1_1:68373264-68373283 None:intergenic 60.0%
TGCACTCGCCCATCCCGAAA+AGG - chr1_1:68373272-68373291 None:intergenic 60.0%
GGAAGAATGGGGCCAAGGGA+TGG + chr1_1:68373309-68373328 Msa0038870:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68371939 68374168 68371939 ID=Msa0038870;Name=Msa0038870
chr1_1 mRNA 68371939 68374168 68371939 ID=Msa0038870-mRNA-1;Parent=Msa0038870;Name=Msa0038870-mRNA-1;_AED=0.29;_eAED=0.35;_QI=234|0|0.33|0.66|1|1|3|0|206
chr1_1 exon 68371939 68372187 68371939 ID=Msa0038870-mRNA-1:exon:22252;Parent=Msa0038870-mRNA-1
chr1_1 exon 68372874 68372920 68372874 ID=Msa0038870-mRNA-1:exon:22253;Parent=Msa0038870-mRNA-1
chr1_1 exon 68373610 68374168 68373610 ID=Msa0038870-mRNA-1:exon:22254;Parent=Msa0038870-mRNA-1
chr1_1 five_prime_UTR 68371939 68372172 68371939 ID=Msa0038870-mRNA-1:five_prime_utr;Parent=Msa0038870-mRNA-1
chr1_1 CDS 68372173 68372187 68372173 ID=Msa0038870-mRNA-1:cds;Parent=Msa0038870-mRNA-1
chr1_1 CDS 68372874 68372920 68372874 ID=Msa0038870-mRNA-1:cds;Parent=Msa0038870-mRNA-1
chr1_1 CDS 68373610 68374168 68373610 ID=Msa0038870-mRNA-1:cds;Parent=Msa0038870-mRNA-1
Gene Sequence

>Msa0038870

ATGCCATTCCCTCAGTTACCACTGCAAGCAGATCCTATTACAATAATATACATGTTAAGTAGTTCAATGGATAACATGGCATGTAATAAAGGGCAACAACATGTGAGAAAGACAAAGAAGAAGCAGGTGAAAGATGAGTTGGATCGTCTCAAACAAGCTGAAAAGAAAAAGAGACGGTTGGAAAAAGCTCTAGCTACTTCTGCTGCCATCATATCGGAACTGGAAAAAAAGAAACAGAAAAAGAAAGAAGAACAACAAAGACTTGATGAAGAGGGTGCTGCAATTGCGGAAGCCGTCGCTCTGCATGTTCTACTTGATGAAGACTCGGATGATTCATATAAGGTTGAGTGCAAGACCTGGGATGATTATAATAATAATCTTGATTTCTTCATGGGTGGGAAAAGAGCTTGCTTTCCTAATCTAGATGGTGGCACATGGTCCGTCACTTCCCAAAACGGCAAGTGGTCTATCTCGTCCGGGCCTTTTGAAAACAATGTGCACGAACCGCTTTACGAAGCAGGATGGGATCCTACAAGATTCTCTGTTGATCTTATAGCAGCACAAGCAGTTAGATCACTCCACATTGCAGAGAATGCAGATGAGGATAGGATTCTCTTCTAA

Protein sequence

>Msa0038870

MPFPQLPLQADPITIIYMLSSSMDNMACNKGQQHVRKTKKKQVKDELDRLKQAEKKKRRLEKALATSAAIISELEKKKQKKKEEQQRLDEEGAAIAEAVALHVLLDEDSDDSYKVECKTWDDYNNNLDFFMGGKRACFPNLDGGTWSVTSQNGKWSISSGPFENNVHEPLYEAGWDPTRFSVDLIAAQAVRSLHIAENADEDRILF*