Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346740 | XP_003611079.1 | 96.894 | 161 | 5 | 0 | 1 | 161 | 127 | 287 | 3.36e-108 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346740 | sp|Q7XSQ9|PIP12_ORYSJ | 88.199 | 161 | 18 | 1 | 1 | 161 | 129 | 288 | 4.61e-100 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346740 | G7KC21 | 96.894 | 161 | 5 | 0 | 1 | 161 | 127 | 287 | 1.61e-108 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054390 | Msa0346740 | 0.804986 | 1.659556e-49 | -8.615850e-47 |
| Msa0185960 | Msa0346740 | 0.804919 | 1.714300e-49 | -8.615850e-47 |
| Msa0248680 | Msa0346740 | 0.807936 | 3.961601e-50 | -8.615850e-47 |
| Msa0346740 | Msa0384370 | 0.803572 | 3.270751e-49 | -8.615850e-47 |
| Msa0346740 | Msa0422050 | 0.813298 | 2.747004e-51 | -8.615850e-47 |
| Msa0346740 | Msa0430370 | 0.810459 | 1.140416e-50 | -8.615850e-47 |
| Msa0346740 | Msa0431200 | 0.807859 | 4.114629e-50 | -8.615850e-47 |
| Msa0346740 | Msa0468700 | 0.804342 | 2.262065e-49 | -8.615850e-47 |
| Msa0346740 | Msa0478630 | 0.802039 | 6.776864e-49 | -8.615850e-47 |
| Msa0346740 | Msa0520260 | 0.804770 | 1.841598e-49 | -8.615850e-47 |
| Msa0346740 | Msa0522700 | 0.818192 | 2.227976e-52 | -8.615850e-47 |
| Msa0346740 | Msa0563940 | 0.810428 | 1.158149e-50 | -8.615850e-47 |
| Msa0346740 | Msa0625340 | 0.810575 | 1.076868e-50 | -8.615850e-47 |
| Msa0346740 | Msa0660260 | 0.806347 | 8.596858e-50 | -8.615850e-47 |
| Msa0346740 | Msa0688620 | 0.811689 | 6.174581e-51 | -8.615850e-47 |
| Msa0346740 | Msa0695560 | 0.805897 | 1.069305e-49 | -8.615850e-47 |
| Msa0346740 | Msa0740710 | 0.809059 | 2.281877e-50 | -8.615850e-47 |
| Msa0346740 | Msa0749190 | 0.811949 | 5.421301e-51 | -8.615850e-47 |
| Msa0346740 | Msa0750520 | 0.808533 | 2.955106e-50 | -8.615850e-47 |
| Msa0346740 | Msa0752780 | 0.872224 | 3.746669e-67 | -8.615850e-47 |
| Msa0346740 | Msa0909760 | 0.810654 | 1.035475e-50 | -8.615850e-47 |
| Msa0346740 | Msa0966710 | 0.804887 | 1.741212e-49 | -8.615850e-47 |
| Msa0346740 | Msa1000970 | 0.810470 | 1.134420e-50 | -8.615850e-47 |
| Msa0346740 | Msa1071410 | 0.808665 | 2.770520e-50 | -8.615850e-47 |
| Msa0346740 | Msa1216090 | 0.804337 | 2.267725e-49 | -8.615850e-47 |
| Msa0346740 | Msa1349690 | 0.865708 | 4.853389e-65 | -8.615850e-47 |
| Msa0346740 | Msa1358290 | 0.879189 | 1.526491e-69 | -8.615850e-47 |
| Msa0346740 | Msa1381800 | 0.810105 | 1.360002e-50 | -8.615850e-47 |
| Msa0346740 | Msa1392740 | 0.854225 | 1.418369e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346740 | MtrunA17_Chr5g0397391 | 96.894 | 161 | 5 | 0 | 1 | 161 | 127 | 287 | 3.09e-112 | 320 |
| Msa0346740 | MtrunA17_Chr8g0386961 | 93.125 | 160 | 11 | 0 | 1 | 160 | 127 | 286 | 6.70e-108 | 309 |
| Msa0346740 | MtrunA17_Chr5g0436701 | 85.625 | 160 | 23 | 0 | 1 | 160 | 130 | 289 | 9.09e-99 | 286 |
| Msa0346740 | MtrunA17_Chr3g0113211 | 85.093 | 161 | 24 | 0 | 1 | 161 | 130 | 290 | 1.47e-96 | 280 |
| Msa0346740 | MtrunA17_Chr4g0006001 | 85.000 | 160 | 23 | 1 | 1 | 160 | 131 | 289 | 2.48e-96 | 280 |
| Msa0346740 | MtrunA17_Chr7g0264111 | 74.843 | 159 | 39 | 1 | 1 | 159 | 120 | 277 | 4.85e-84 | 248 |
| Msa0346740 | MtrunA17_Chr2g0326621 | 70.440 | 159 | 46 | 1 | 1 | 159 | 122 | 279 | 2.31e-80 | 239 |
| Msa0346740 | MtrunA17_Chr1g0199731 | 71.698 | 159 | 44 | 1 | 1 | 159 | 120 | 277 | 5.78e-80 | 238 |
| Msa0346740 | MtrunA17_Chr4g0029071 | 70.440 | 159 | 46 | 1 | 1 | 159 | 120 | 277 | 2.44e-77 | 231 |
| Msa0346740 | MtrunA17_Chr3g0145671 | 69.811 | 159 | 47 | 1 | 1 | 159 | 112 | 269 | 2.47e-76 | 229 |
| Msa0346740 | MtrunA17_Chr6g0478191 | 42.331 | 163 | 80 | 6 | 1 | 161 | 98 | 248 | 5.78e-22 | 88.6 |
| Msa0346740 | MtrunA17_Chr1g0188771 | 37.255 | 153 | 83 | 4 | 1 | 152 | 98 | 238 | 4.21e-20 | 84.0 |
| Msa0346740 | MtrunA17_Chr2g0331261 | 33.553 | 152 | 88 | 4 | 1 | 151 | 97 | 236 | 9.55e-17 | 74.7 |
| Msa0346740 | MtrunA17_Chr1g0212671 | 35.714 | 154 | 85 | 5 | 1 | 152 | 98 | 239 | 2.25e-16 | 73.9 |
| Msa0346740 | MtrunA17_Chr4g0030861 | 33.974 | 156 | 78 | 6 | 1 | 149 | 98 | 235 | 6.55e-16 | 72.4 |
| Msa0346740 | MtrunA17_Chr8g0340161 | 34.228 | 149 | 85 | 4 | 1 | 148 | 96 | 232 | 7.49e-16 | 72.4 |
| Msa0346740 | MtrunA17_Chr5g0399341 | 35.119 | 168 | 85 | 7 | 1 | 161 | 96 | 246 | 2.13e-15 | 70.9 |
| Msa0346740 | MtrunA17_Chr1g0146161 | 31.410 | 156 | 82 | 5 | 1 | 149 | 92 | 229 | 1.67e-14 | 68.6 |
| Msa0346740 | MtrunA17_Chr1g0146171 | 32.692 | 156 | 80 | 5 | 1 | 149 | 92 | 229 | 2.14e-14 | 68.2 |
| Msa0346740 | MtrunA17_Chr7g0264961 | 32.692 | 156 | 83 | 6 | 1 | 151 | 98 | 236 | 2.08e-13 | 65.9 |
| Msa0346740 | MtrunA17_Chr4g0038611 | 28.659 | 164 | 101 | 6 | 1 | 153 | 60 | 218 | 1.23e-12 | 63.9 |
| Msa0346740 | MtrunA17_Chr7g0222791 | 32.468 | 154 | 90 | 5 | 1 | 152 | 98 | 239 | 1.54e-12 | 63.2 |
| Msa0346740 | MtrunA17_Chr4g0038591 | 26.946 | 167 | 100 | 7 | 1 | 153 | 123 | 281 | 2.97e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346740 | AT1G01620.2 | 87.578 | 161 | 19 | 1 | 1 | 161 | 55 | 214 | 3.49e-100 | 287 |
| Msa0346740 | AT1G01620.1 | 87.578 | 161 | 19 | 1 | 1 | 161 | 127 | 286 | 1.44e-99 | 288 |
| Msa0346740 | AT4G23400.1 | 88.125 | 160 | 18 | 1 | 1 | 160 | 128 | 286 | 1.56e-98 | 285 |
| Msa0346740 | AT4G00430.1 | 86.335 | 161 | 21 | 1 | 1 | 161 | 128 | 287 | 5.99e-98 | 284 |
| Msa0346740 | AT3G61430.2 | 84.472 | 161 | 24 | 1 | 1 | 161 | 127 | 286 | 3.64e-97 | 282 |
| Msa0346740 | AT3G61430.1 | 84.472 | 161 | 24 | 1 | 1 | 161 | 127 | 286 | 3.64e-97 | 282 |
| Msa0346740 | AT2G45960.1 | 84.472 | 161 | 24 | 1 | 1 | 161 | 127 | 286 | 4.17e-96 | 279 |
| Msa0346740 | AT2G37170.2 | 74.026 | 154 | 39 | 1 | 1 | 154 | 161 | 313 | 1.05e-80 | 242 |
| Msa0346740 | AT2G37170.1 | 74.026 | 154 | 39 | 1 | 1 | 154 | 118 | 270 | 1.59e-80 | 240 |
| Msa0346740 | AT5G60660.1 | 72.956 | 159 | 42 | 1 | 1 | 159 | 120 | 277 | 1.78e-80 | 240 |
| Msa0346740 | AT3G53420.1 | 74.026 | 154 | 39 | 1 | 1 | 154 | 120 | 272 | 9.00e-80 | 238 |
| Msa0346740 | AT3G53420.2 | 74.026 | 154 | 39 | 1 | 1 | 154 | 120 | 272 | 9.00e-80 | 238 |
| Msa0346740 | AT2G39010.1 | 70.440 | 159 | 46 | 1 | 1 | 159 | 119 | 276 | 4.71e-79 | 236 |
| Msa0346740 | AT2G37180.1 | 72.727 | 154 | 41 | 1 | 1 | 154 | 118 | 270 | 8.36e-79 | 235 |
| Msa0346740 | AT3G54820.1 | 71.698 | 159 | 44 | 1 | 1 | 159 | 119 | 276 | 3.23e-78 | 234 |
| Msa0346740 | AT2G16850.1 | 71.069 | 159 | 45 | 1 | 1 | 159 | 111 | 268 | 2.16e-77 | 231 |
| Msa0346740 | AT4G35100.1 | 70.440 | 159 | 46 | 1 | 1 | 159 | 113 | 270 | 1.77e-76 | 229 |
| Msa0346740 | AT4G35100.2 | 70.440 | 159 | 46 | 1 | 1 | 159 | 113 | 270 | 1.77e-76 | 229 |
| Msa0346740 | AT2G45960.2 | 83.846 | 130 | 20 | 1 | 1 | 130 | 127 | 255 | 1.22e-74 | 224 |
| Msa0346740 | AT2G45960.3 | 83.846 | 130 | 20 | 1 | 1 | 130 | 127 | 255 | 1.04e-73 | 223 |
| Msa0346740 | AT4G00430.2 | 78.409 | 88 | 18 | 1 | 1 | 88 | 128 | 214 | 4.67e-41 | 137 |
| Msa0346740 | AT2G39010.2 | 64.286 | 84 | 29 | 1 | 1 | 84 | 119 | 201 | 6.34e-31 | 111 |
| Msa0346740 | AT1G17810.1 | 39.216 | 153 | 80 | 4 | 1 | 152 | 106 | 246 | 2.14e-21 | 87.8 |
| Msa0346740 | AT1G73190.1 | 40.909 | 154 | 77 | 5 | 5 | 156 | 110 | 251 | 1.10e-20 | 85.9 |
| Msa0346740 | AT5G47450.1 | 37.584 | 149 | 80 | 5 | 1 | 148 | 96 | 232 | 1.36e-17 | 77.4 |
| Msa0346740 | AT4G01470.1 | 36.538 | 156 | 78 | 5 | 1 | 151 | 98 | 237 | 3.37e-17 | 76.3 |
| Msa0346740 | AT4G17340.1 | 37.255 | 153 | 75 | 6 | 1 | 148 | 96 | 232 | 1.16e-16 | 74.7 |
| Msa0346740 | AT3G16240.1 | 33.557 | 149 | 86 | 4 | 1 | 148 | 96 | 232 | 1.69e-14 | 68.9 |
| Msa0346740 | AT2G36830.1 | 33.548 | 155 | 82 | 6 | 1 | 150 | 98 | 236 | 2.47e-14 | 68.6 |
| Msa0346740 | AT3G26520.1 | 33.333 | 156 | 83 | 5 | 1 | 151 | 99 | 238 | 1.02e-13 | 67.0 |
| Msa0346740 | AT2G25810.1 | 29.936 | 157 | 97 | 4 | 1 | 156 | 92 | 236 | 1.66e-13 | 66.2 |
| Msa0346740 | AT3G47440.1 | 31.373 | 153 | 91 | 4 | 1 | 152 | 100 | 239 | 3.74e-13 | 65.5 |
Find 39 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTACAATTCCCATTAC+TGG | 0.294571 | 3_1:-7390016 | Msa0346740:CDS |
| TTCTGGGTTGGACCTTTCAT+TGG | 0.308099 | 3_1:-7389813 | Msa0346740:CDS |
| GATCCGAGCAATTCCTTTCA+AGG | 0.393867 | 3_1:-7389757 | Msa0346740:CDS |
| GCTCGTTATGAGTTGTATAA+AGG | 0.401946 | 3_1:-7390374 | Msa0346740:CDS |
| ACAATTCCCATTACTGGAAC+TGG | 0.407279 | 3_1:-7390010 | Msa0346740:CDS |
| GAATTGCTCGGATCACTATC+TGG | 0.408932 | 3_1:+7389766 | None:intergenic |
| ATGGTCTCTGTTGTATATTA+TGG | 0.412666 | 3_1:+7389958 | None:intergenic |
| AGAGTCTCTTGCATTTCTCT+TGG | 0.418783 | 3_1:+7390247 | None:intergenic |
| TGCAAGAGACTCTCACGTTC+CGG | 0.436085 | 3_1:-7390237 | Msa0346740:intron |
| TACACCAAGGGTGATGGTCT+TGG | 0.441240 | 3_1:-7390326 | Msa0346740:CDS |
| CTTGGAGCTATCTGTGGTGC+TGG | 0.453990 | 3_1:-7390422 | Msa0346740:CDS |
| AATTACTCCCTTGCCTTGAA+AGG | 0.455988 | 3_1:+7389744 | None:intergenic |
| TTAATGCCAGTTCCAGTAAT+GGG | 0.469401 | 3_1:+7390004 | None:intergenic |
| TACATAATAATGCAGTGTCT+TGG | 0.479630 | 3_1:-7390440 | Msa0346740:CDS |
| GGTCTTGGAGCTGAGATTGT+TGG | 0.502760 | 3_1:-7390311 | Msa0346740:CDS |
| ATTAACCCAGCTAGGACTCT+TGG | 0.510874 | 3_1:-7389986 | Msa0346740:CDS |
| TGCATTTCTCTTGGCATCAG+TGG | 0.515764 | 3_1:+7390256 | None:intergenic |
| TATACAACAGAGACCATGCT+TGG | 0.521813 | 3_1:-7389952 | Msa0346740:CDS |
| AGCTCCAAGACCATCACCCT+TGG | 0.522666 | 3_1:+7390322 | None:intergenic |
| AGCAATTCCTTTCAAGGCAA+GGG | 0.527223 | 3_1:-7389751 | Msa0346740:CDS |
| CCATCACCCTTGGTGTAACC+AGG | 0.535441 | 3_1:+7390332 | None:intergenic |
| GCAGCACCAAGAGTCCTAGC+TGG | 0.536664 | 3_1:+7389980 | None:intergenic |
| TTGCCTTGAAAGGAATTGCT+CGG | 0.539077 | 3_1:+7389754 | None:intergenic |
| GCAAGTGCAGCTCCAATGAA+AGG | 0.549715 | 3_1:+7389801 | None:intergenic |
| GGAGCAAATGTTGTGACTCC+TGG | 0.558145 | 3_1:-7390350 | Msa0346740:CDS |
| GTTAATGCCAGTTCCAGTAA+TGG | 0.566105 | 3_1:+7390003 | None:intergenic |
| CCTGGTTACACCAAGGGTGA+TGG | 0.585245 | 3_1:-7390332 | Msa0346740:CDS |
| GAGCAATTCCTTTCAAGGCA+AGG | 0.588614 | 3_1:-7389752 | Msa0346740:CDS |
| CGTTATGAGTTGTATAAAGG+TGG | 0.591045 | 3_1:-7390371 | Msa0346740:CDS |
| CAGTGTCTTGGAGCTATCTG+TGG | 0.593126 | 3_1:-7390428 | Msa0346740:CDS |
| ACAGCAAACCCAATTGGAAG+AGG | 0.593192 | 3_1:+7390052 | None:intergenic |
| GTAGAATACTGCTCTTGTCA+AGG | 0.594791 | 3_1:+7390460 | None:intergenic |
| ATACAACAGAGACCATGCTT+GGG | 0.595986 | 3_1:-7389951 | Msa0346740:CDS |
| CAGCACCAAGAGTCCTAGCT+GGG | 0.602891 | 3_1:+7389981 | None:intergenic |
| TGTGGTGCTGGTGTAGTGAA+AGG | 0.611215 | 3_1:-7390410 | Msa0346740:CDS |
| ATACATGGTCATCCCAAGCA+TGG | 0.639779 | 3_1:+7389939 | None:intergenic |
| GAACTGGCATTAACCCAGCT+AGG | 0.640680 | 3_1:-7389994 | Msa0346740:CDS |
| GTGACTCCTGGTTACACCAA+GGG | 0.652855 | 3_1:-7390338 | Msa0346740:CDS |
| TGTGACTCCTGGTTACACCA+AGG | 0.762315 | 3_1:-7390339 | Msa0346740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTAATGTTTGAATTTTG+TGG | - | chr3_1:7390356-7390375 | Msa0346740:CDS | 15.0% |
| !!! | ATGTTTGTAATTGTAGATTT+TGG | - | chr3_1:7390133-7390152 | Msa0346740:intron | 20.0% |
| !! | CAGAACAAAAAATAAATTGA+AGG | + | chr3_1:7390325-7390344 | None:intergenic | 20.0% |
| !!! | TGATATATGCTTCATTTTTG+TGG | - | chr3_1:7390094-7390113 | Msa0346740:intron | 25.0% |
| !!! | AAATTAAACAGTGGATTTTC+TGG | - | chr3_1:7390380-7390399 | Msa0346740:CDS | 25.0% |
| !!! | AATTAAACAGTGGATTTTCT+GGG | - | chr3_1:7390381-7390400 | Msa0346740:CDS | 25.0% |
| TACATAATAATGCAGTGTCT+TGG | - | chr3_1:7389770-7389789 | Msa0346740:CDS | 30.0% | |
| TGAAATTCATTTACACGTAC+CGG | + | chr3_1:7389995-7390014 | None:intergenic | 30.0% | |
| ATGGTCTCTGTTGTATATTA+TGG | + | chr3_1:7390255-7390274 | None:intergenic | 30.0% | |
| ! | TTTTGTGGCAAATTAAACAG+TGG | - | chr3_1:7390371-7390390 | Msa0346740:CDS | 30.0% |
| GCTCGTTATGAGTTGTATAA+AGG | - | chr3_1:7389836-7389855 | Msa0346740:intron | 35.0% | |
| CGTTATGAGTTGTATAAAGG+TGG | - | chr3_1:7389839-7389858 | Msa0346740:intron | 35.0% | |
| AAAAACACAGCAAACCCAAT+TGG | + | chr3_1:7390167-7390186 | None:intergenic | 35.0% | |
| !!! | AATTGGGTTTGCTGTGTTTT+TGG | - | chr3_1:7390166-7390185 | Msa0346740:intron | 35.0% |
| TTAATGCCAGTTCCAGTAAT+GGG | + | chr3_1:7390209-7390228 | None:intergenic | 35.0% | |
| ACAAAGTGAAAGGACATACA+TGG | + | chr3_1:7390289-7390308 | None:intergenic | 35.0% | |
| CAACAGCATAACAAAGTGAA+AGG | + | chr3_1:7390299-7390318 | None:intergenic | 35.0% | |
| ! | TTCACTTTGTTATGCTGTTG+TGG | - | chr3_1:7390299-7390318 | Msa0346740:CDS | 35.0% |
| GTAGAATACTGCTCTTGTCA+AGG | + | chr3_1:7389753-7389772 | None:intergenic | 40.0% | |
| ! | TGGTGTAGTGAAAGGTTTTG+AGG | - | chr3_1:7389808-7389827 | Msa0346740:CDS | 40.0% |
| AGAGTCTCTTGCATTTCTCT+TGG | + | chr3_1:7389966-7389985 | None:intergenic | 40.0% | |
| !! | ATTTTGGCACCTCTTCCAAT+TGG | - | chr3_1:7390149-7390168 | Msa0346740:intron | 40.0% |
| ! | TTTTGGCACCTCTTCCAATT+GGG | - | chr3_1:7390150-7390169 | Msa0346740:intron | 40.0% |
| !!! | TGCTGTGTTTTTGGTTCACT+TGG | - | chr3_1:7390175-7390194 | Msa0346740:intron | 40.0% |
| TTGGCTACAATTCCCATTAC+TGG | - | chr3_1:7390194-7390213 | Msa0346740:intron | 40.0% | |
| ACAATTCCCATTACTGGAAC+TGG | - | chr3_1:7390200-7390219 | Msa0346740:intron | 40.0% | |
| GTTAATGCCAGTTCCAGTAA+TGG | + | chr3_1:7390210-7390229 | None:intergenic | 40.0% | |
| TATACAACAGAGACCATGCT+TGG | - | chr3_1:7390258-7390277 | Msa0346740:CDS | 40.0% | |
| ATACAACAGAGACCATGCTT+GGG | - | chr3_1:7390259-7390278 | Msa0346740:CDS | 40.0% | |
| !! | AAACAGTGGATTTTCTGGGT+TGG | - | chr3_1:7390385-7390404 | Msa0346740:CDS | 40.0% |
| TTGCCTTGAAAGGAATTGCT+CGG | + | chr3_1:7390459-7390478 | None:intergenic | 40.0% | |
| AGCAATTCCTTTCAAGGCAA+GGG | - | chr3_1:7390459-7390478 | Msa0346740:CDS | 40.0% | |
| TGCATTTCTCTTGGCATCAG+TGG | + | chr3_1:7389957-7389976 | None:intergenic | 45.0% | |
| ACAGCAAACCCAATTGGAAG+AGG | + | chr3_1:7390161-7390180 | None:intergenic | 45.0% | |
| ATTAACCCAGCTAGGACTCT+TGG | - | chr3_1:7390224-7390243 | Msa0346740:intron | 45.0% | |
| ATACATGGTCATCCCAAGCA+TGG | + | chr3_1:7390274-7390293 | None:intergenic | 45.0% | |
| ! | TTCTGGGTTGGACCTTTCAT+TGG | - | chr3_1:7390397-7390416 | Msa0346740:CDS | 45.0% |
| GAATTGCTCGGATCACTATC+TGG | + | chr3_1:7390447-7390466 | None:intergenic | 45.0% | |
| GATCCGAGCAATTCCTTTCA+AGG | - | chr3_1:7390453-7390472 | Msa0346740:CDS | 45.0% | |
| GAGCAATTCCTTTCAAGGCA+AGG | - | chr3_1:7390458-7390477 | Msa0346740:CDS | 45.0% | |
| CAGTGTCTTGGAGCTATCTG+TGG | - | chr3_1:7389782-7389801 | Msa0346740:CDS | 50.0% | |
| !! | TGTGGTGCTGGTGTAGTGAA+AGG | - | chr3_1:7389800-7389819 | Msa0346740:CDS | 50.0% |
| GGAGCAAATGTTGTGACTCC+TGG | - | chr3_1:7389860-7389879 | Msa0346740:intron | 50.0% | |
| TGTGACTCCTGGTTACACCA+AGG | - | chr3_1:7389871-7389890 | Msa0346740:intron | 50.0% | |
| GTGACTCCTGGTTACACCAA+GGG | - | chr3_1:7389872-7389891 | Msa0346740:intron | 50.0% | |
| ! | TACACCAAGGGTGATGGTCT+TGG | - | chr3_1:7389884-7389903 | Msa0346740:intron | 50.0% |
| GGTCTTGGAGCTGAGATTGT+TGG | - | chr3_1:7389899-7389918 | Msa0346740:intron | 50.0% | |
| TGCAAGAGACTCTCACGTTC+CGG | - | chr3_1:7389973-7389992 | Msa0346740:CDS | 50.0% | |
| GAACTGGCATTAACCCAGCT+AGG | - | chr3_1:7390216-7390235 | Msa0346740:intron | 50.0% | |
| GCAAGTGCAGCTCCAATGAA+AGG | + | chr3_1:7390412-7390431 | None:intergenic | 50.0% | |
| CTTGGAGCTATCTGTGGTGC+TGG | - | chr3_1:7389788-7389807 | Msa0346740:CDS | 55.0% | |
| ! | CCATCACCCTTGGTGTAACC+AGG | + | chr3_1:7389881-7389900 | None:intergenic | 55.0% |
| CCTGGTTACACCAAGGGTGA+TGG | - | chr3_1:7389878-7389897 | Msa0346740:intron | 55.0% | |
| AGCTCCAAGACCATCACCCT+TGG | + | chr3_1:7389891-7389910 | None:intergenic | 55.0% | |
| CAGCACCAAGAGTCCTAGCT+GGG | + | chr3_1:7390232-7390251 | None:intergenic | 55.0% | |
| GCAGCACCAAGAGTCCTAGC+TGG | + | chr3_1:7390233-7390252 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 7389746 | 7390486 | 7389746 | ID=Msa0346740;Name=Msa0346740 |
| chr3_1 | mRNA | 7389746 | 7390486 | 7389746 | ID=Msa0346740-mRNA-1;Parent=Msa0346740;Name=Msa0346740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|161 |
| chr3_1 | exon | 7390238 | 7390486 | 7390238 | ID=Msa0346740-mRNA-1:exon:2095;Parent=Msa0346740-mRNA-1 |
| chr3_1 | exon | 7389943 | 7390083 | 7389943 | ID=Msa0346740-mRNA-1:exon:2094;Parent=Msa0346740-mRNA-1 |
| chr3_1 | exon | 7389746 | 7389841 | 7389746 | ID=Msa0346740-mRNA-1:exon:2093;Parent=Msa0346740-mRNA-1 |
| chr3_1 | CDS | 7390238 | 7390486 | 7390238 | ID=Msa0346740-mRNA-1:cds;Parent=Msa0346740-mRNA-1 |
| chr3_1 | CDS | 7389943 | 7390083 | 7389943 | ID=Msa0346740-mRNA-1:cds;Parent=Msa0346740-mRNA-1 |
| chr3_1 | CDS | 7389746 | 7389841 | 7389746 | ID=Msa0346740-mRNA-1:cds;Parent=Msa0346740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
