Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364870 | XP_024634968.1 | 99.384 | 649 | 4 | 0 | 1 | 649 | 553 | 1201 | 0.0 | 1365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364870 | sp|O82392|THIC_ARATH | 86.420 | 648 | 80 | 3 | 2 | 648 | 3 | 643 | 0.0 | 1176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364870 | A0A072UWI1 | 99.384 | 649 | 4 | 0 | 1 | 649 | 1 | 649 | 0.0 | 1358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044700 | Msa0364870 | 0.821254 | 4.451955e-53 | -8.615850e-47 |
| Msa0141760 | Msa0364870 | 0.805152 | 1.532379e-49 | -8.615850e-47 |
| Msa0364870 | Msa0373950 | 0.805909 | 1.063136e-49 | -8.615850e-47 |
| Msa0364870 | Msa0412470 | 0.801459 | 8.914316e-49 | -8.615850e-47 |
| Msa0364870 | Msa0429500 | 0.806862 | 6.692667e-50 | -8.615850e-47 |
| Msa0364870 | Msa0429550 | 0.814054 | 1.873110e-51 | -8.615850e-47 |
| Msa0364870 | Msa0504310 | 0.827548 | 1.472539e-54 | -8.615850e-47 |
| Msa0364870 | Msa0623480 | 0.801278 | 9.710241e-49 | -8.615850e-47 |
| Msa0364870 | Msa0721650 | 0.830375 | 3.042605e-55 | -8.615850e-47 |
| Msa0364870 | Msa0797310 | 0.827685 | 1.364916e-54 | -8.615850e-47 |
| Msa0364870 | Msa0841570 | 0.803117 | 4.063118e-49 | -8.615850e-47 |
| Msa0364870 | Msa0906180 | 0.852141 | 5.608140e-61 | -8.615850e-47 |
| Msa0364870 | Msa0938190 | 0.845773 | 3.294256e-59 | -8.615850e-47 |
| Msa0364870 | Msa0976000 | 0.803226 | 3.856401e-49 | -8.615850e-47 |
| Msa0364870 | Msa0993280 | 0.808905 | 2.461212e-50 | -8.615850e-47 |
| Msa0364870 | Msa1032760 | 0.822039 | 2.932030e-53 | -8.615850e-47 |
| Msa0364870 | Msa1113860 | 0.809303 | 2.022925e-50 | -8.615850e-47 |
| Msa0364870 | Msa1143820 | 0.804302 | 2.306027e-49 | -8.615850e-47 |
| Msa0364870 | Msa1239000 | 0.819643 | 1.042610e-52 | -8.615850e-47 |
| Msa0364870 | Msa1303040 | 0.815234 | 1.026192e-51 | -8.615850e-47 |
| Msa0364870 | Msa1386820 | 0.803632 | 3.177940e-49 | -8.615850e-47 |
| Msa0364870 | Msa1452860 | 0.834098 | 3.647398e-56 | -8.615850e-47 |
| Msa0329050 | Msa0364870 | 0.809783 | 1.595318e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364870 | MtrunA17_Chr3g0104221 | 99.384 | 649 | 4 | 0 | 1 | 649 | 1 | 649 | 0.0 | 1358 |
| Msa0364870 | MtrunA17_Chr3g0104251 | 96.456 | 649 | 22 | 1 | 1 | 649 | 1 | 648 | 0.0 | 1316 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364870 | AT2G29630.3 | 86.420 | 648 | 80 | 3 | 2 | 648 | 3 | 643 | 0.0 | 1176 |
| Msa0364870 | AT2G29630.1 | 86.420 | 648 | 80 | 3 | 2 | 648 | 3 | 643 | 0.0 | 1176 |
| Msa0364870 | AT2G29630.2 | 86.420 | 648 | 80 | 3 | 2 | 648 | 3 | 643 | 0.0 | 1176 |
| Msa0364870 | AT2G29630.4 | 93.528 | 479 | 30 | 1 | 170 | 648 | 1 | 478 | 0.0 | 948 |
Find 172 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCCTTGGATTTATATTT+TGG | 0.054220 | 3_1:-58431911 | None:intergenic |
| ATCCAGTCTTTGCGCAATTT+TGG | 0.151904 | 3_1:-58432370 | None:intergenic |
| GTCATACGCTTTGCAGTTAA+AGG | 0.211892 | 3_1:-58432928 | None:intergenic |
| TTCTCAAGTGCTTGATAAAT+AGG | 0.251529 | 3_1:-58432787 | None:intergenic |
| ATCTTCATAGAGCAGAATTT+AGG | 0.265833 | 3_1:-58434222 | None:intergenic |
| TTAGAACTTATGTAAGATTC+TGG | 0.284840 | 3_1:-58434405 | None:intergenic |
| TCTTCATAGAGCAGAATTTA+GGG | 0.329053 | 3_1:-58434221 | None:intergenic |
| GGCAACCCGAGATGTTCTTT+TGG | 0.349740 | 3_1:-58433958 | None:intergenic |
| TTCGAATCTCGCCTTGCTTA+AGG | 0.363084 | 3_1:-58434082 | None:intergenic |
| GCTATTGGTGCTGCAAATAT+CGG | 0.370637 | 3_1:+58433901 | Msa0364870:CDS |
| AGAATCTTACATAAGTTCTA+AGG | 0.371401 | 3_1:+58434407 | Msa0364870:CDS |
| GGACCAGTTTGCTTTGTCAT+TGG | 0.374176 | 3_1:+58434116 | Msa0364870:CDS |
| TGTGTCATTTGCATCATAAA+TGG | 0.379836 | 3_1:-58433103 | None:intergenic |
| CAAGCACTTGAGAAAGTTAA+CGG | 0.391428 | 3_1:+58432796 | Msa0364870:CDS |
| TTGCCTCGGTTTGACGTTGT+TGG | 0.393144 | 3_1:+58431447 | Msa0364870:CDS |
| TAACTCCAAGTGCTTCTTGT+TGG | 0.399754 | 3_1:-58432551 | None:intergenic |
| GCCTTCACATCATCTCTGTT+TGG | 0.401765 | 3_1:-58433979 | None:intergenic |
| GATCACATCACCTCTGCTAT+TGG | 0.404414 | 3_1:+58433886 | Msa0364870:CDS |
| AGATCCACTCTCGAGTTTCA+TGG | 0.405158 | 3_1:-58432732 | None:intergenic |
| GACAAGTGAACTCGTCGAAA+TGG | 0.410450 | 3_1:-58431846 | None:intergenic |
| GACGGAAGTGGAAGAAAATC+AGG | 0.413711 | 3_1:-58431609 | None:intergenic |
| GGGGCAATATCGGTTGTTAA+AGG | 0.419451 | 3_1:-58433856 | None:intergenic |
| TCCTCCTCTCGAAACTATTC+CGG | 0.422545 | 3_1:-58432950 | None:intergenic |
| ACTTCTGACCTCACAAACTC+TGG | 0.423397 | 3_1:-58432502 | None:intergenic |
| ACATCGGTTGTTTGCAAGAA+TGG | 0.425864 | 3_1:+58431384 | Msa0364870:CDS |
| TCCATGCAGGAGTACTTCTT+AGG | 0.427343 | 3_1:+58432899 | Msa0364870:CDS |
| TTTCGACGAGTTCACTTGTC+TGG | 0.428378 | 3_1:+58431849 | Msa0364870:CDS |
| TCTTCCACTTCCGTCCTTCG+AGG | 0.432465 | 3_1:+58431617 | Msa0364870:CDS |
| TTGTTCAGCTTGTTCAATCA+AGG | 0.434529 | 3_1:-58432857 | None:intergenic |
| GGAAGAAAATCAGGAGAAGC+AGG | 0.436560 | 3_1:-58431600 | None:intergenic |
| GCAGATAAGACCAGCTTCTC+AGG | 0.436914 | 3_1:+58430054 | Msa0364870:five_prime_UTR |
| TGGAAGGACATGGCTGTCAT+TGG | 0.442271 | 3_1:-58434141 | None:intergenic |
| GAGAGAGAGACCTGAGAAGC+TGG | 0.442588 | 3_1:-58430064 | None:intergenic |
| AGGAAGTTTACAAGGTTCAA+TGG | 0.445895 | 3_1:+58432656 | Msa0364870:CDS |
| AACATCCACACGCTCAAGAA+TGG | 0.446775 | 3_1:+58434052 | Msa0364870:CDS |
| TCCCAAAATTGCGCAAAGAC+TGG | 0.449046 | 3_1:+58432368 | Msa0364870:CDS |
| AGAATTTCGCTTATGAGCAC+TGG | 0.450600 | 3_1:+58433010 | Msa0364870:CDS |
| TCAGATGTACTATGCTAAGC+AGG | 0.450997 | 3_1:+58432429 | Msa0364870:CDS |
| CATGTTTCTCAGCATACTTT+CGG | 0.451161 | 3_1:-58434257 | None:intergenic |
| CGCAACTCTGCTGTACCAGT+TGG | 0.457424 | 3_1:+58432757 | Msa0364870:CDS |
| AGCTCCATCTTCCATGGCTC+TGG | 0.460568 | 3_1:+58431500 | Msa0364870:CDS |
| TTGTCTGCATTAGTTGTTGG+AGG | 0.466271 | 3_1:-58431549 | None:intergenic |
| TCTTATCTGCAGAAATGAAA+TGG | 0.469993 | 3_1:-58430041 | None:intergenic |
| TTGAGCGTGTGGATGTTGTT+TGG | 0.470937 | 3_1:-58434046 | None:intergenic |
| GCTGCAAATATCGGCGCACT+TGG | 0.474749 | 3_1:+58433910 | Msa0364870:CDS |
| GGTACCAGAGCCATGGAAGA+TGG | 0.474883 | 3_1:-58431504 | None:intergenic |
| TTGGACGCACTTCAAATGCT+TGG | 0.476041 | 3_1:+58431466 | Msa0364870:CDS |
| TGCGCAAAGACTGGATTGAT+AGG | 0.476088 | 3_1:+58432377 | Msa0364870:CDS |
| GAAGCACCTTTCTACACTCT+TGG | 0.477648 | 3_1:+58433832 | Msa0364870:CDS |
| GATCCAATGACAAAGCAAAC+TGG | 0.481172 | 3_1:-58434119 | None:intergenic |
| GGAAGTTTACAAGGTTCAAT+GGG | 0.485099 | 3_1:+58432657 | Msa0364870:CDS |
| ATCGTAACCAGGGGCAATAT+CGG | 0.485888 | 3_1:-58433866 | None:intergenic |
| ACATCCACACGCTCAAGAAT+GGG | 0.491638 | 3_1:+58434053 | Msa0364870:CDS |
| CACTCGTAGAGCATGGGAAA+AGG | 0.493579 | 3_1:+58433161 | Msa0364870:CDS |
| CGAAAGTATGCTGAGAAACA+TGG | 0.494520 | 3_1:+58434258 | Msa0364870:CDS |
| ACAGTCATGGATCTCTCAAC+TGG | 0.496297 | 3_1:+58432700 | Msa0364870:CDS |
| TAGTACATCTGAGTGAATCT+TGG | 0.499210 | 3_1:-58432418 | None:intergenic |
| TTTGTAGTTCTGCGTCGAGA+TGG | 0.500161 | 3_1:+58431341 | Msa0364870:intron |
| TCCAAGTGCTTCTTGTTGGA+AGG | 0.503675 | 3_1:-58432547 | None:intergenic |
| ATGCTGAGAAACATGGGTAC+GGG | 0.503942 | 3_1:+58434265 | Msa0364870:CDS |
| AGCATGGGAAAAGGATGTAC+AGG | 0.504706 | 3_1:+58433170 | Msa0364870:CDS |
| AACAGAGATGATGTGAAGGC+TGG | 0.505621 | 3_1:+58433982 | Msa0364870:CDS |
| TGTTGAGGAAGCTTTGAAGC+AGG | 0.506554 | 3_1:+58434293 | Msa0364870:CDS |
| ATAAGTTCTAAGGAAGGGTA+AGG | 0.508545 | 3_1:+58434417 | Msa0364870:CDS |
| CCCTTCCAACAAGAAGCACT+TGG | 0.511786 | 3_1:+58432546 | Msa0364870:CDS |
| CACTCCTCGAAGGACGGAAG+TGG | 0.511930 | 3_1:-58431621 | None:intergenic |
| ACTTTACAGGTGATGAATGA+AGG | 0.515139 | 3_1:+58433745 | Msa0364870:intron |
| CACTTCAAATGCTTGGAAGA+AGG | 0.518810 | 3_1:+58431473 | Msa0364870:CDS |
| TTGTGCATTGGAACATGTCC+TGG | 0.523358 | 3_1:-58433769 | None:intergenic |
| GCAACTCTGCTGTACCAGTT+GGG | 0.524405 | 3_1:+58432758 | Msa0364870:CDS |
| AGGTTCAATGGGCAACTATG+TGG | 0.524862 | 3_1:+58432668 | Msa0364870:CDS |
| TAAATAGGTACAGTCCCAAC+TGG | 0.528500 | 3_1:-58432772 | None:intergenic |
| GAGGTGATGTGATCGTAACC+AGG | 0.529839 | 3_1:-58433877 | None:intergenic |
| GAACCGTTCACTCTCTCAAT+CGG | 0.529869 | 3_1:+58430015 | Msa0364870:five_prime_UTR |
| TTCTCCTTGTGTCAAAAGCT+CGG | 0.530462 | 3_1:-58433136 | None:intergenic |
| CCAAGTGCTTCTTGTTGGAA+GGG | 0.531742 | 3_1:-58432546 | None:intergenic |
| TCGAATGTCAATGTGGCTCT+AGG | 0.534491 | 3_1:-58431525 | None:intergenic |
| GGTTCAATGGGCAACTATGT+GGG | 0.535263 | 3_1:+58432669 | Msa0364870:CDS |
| TTAACAACCGATATTGCCCC+TGG | 0.536665 | 3_1:+58433859 | Msa0364870:CDS |
| GAATTGCAGAAGATCTTACC+TGG | 0.537643 | 3_1:+58432818 | Msa0364870:CDS |
| TATAGAAGAGGAAGTTTACA+AGG | 0.538528 | 3_1:+58432648 | Msa0364870:CDS |
| CAAAGAGCACAAAAGAATCC+AGG | 0.542624 | 3_1:+58431649 | Msa0364870:CDS |
| TTAACTGCAAAGCGTATGAC+CGG | 0.544274 | 3_1:+58432931 | Msa0364870:CDS |
| GATTACTTCACCATCCATGC+AGG | 0.544906 | 3_1:+58432886 | Msa0364870:CDS |
| TGACTCCAAAAGAACATCTC+GGG | 0.547374 | 3_1:+58433953 | Msa0364870:CDS |
| AATTCTCTTTGTGATAAGCT+AGG | 0.547648 | 3_1:-58432993 | None:intergenic |
| AAGAAGTACTCCTGCATGGA+TGG | 0.547995 | 3_1:-58432896 | None:intergenic |
| AGGCGAGATTCGAATTTCGA+TGG | 0.553178 | 3_1:+58434091 | Msa0364870:CDS |
| GTGACTCCAAAAGAACATCT+CGG | 0.553820 | 3_1:+58433952 | Msa0364870:CDS |
| TTTGCATCATAAATGGATCC+AGG | 0.553908 | 3_1:-58433096 | None:intergenic |
| GAGAACTCACTCGTAGAGCA+TGG | 0.554254 | 3_1:+58433154 | Msa0364870:CDS |
| GATGAAACATTGCCGTCAGA+AGG | 0.559015 | 3_1:+58434165 | Msa0364870:CDS |
| ATTGGTGATGGTTTAAGACC+TGG | 0.559490 | 3_1:+58433078 | Msa0364870:CDS |
| GTGAAAGTGAATGCAAACAT+TGG | 0.562428 | 3_1:+58432604 | Msa0364870:CDS |
| GGAGAACAACATGGTGAAGC+TGG | 0.563050 | 3_1:+58434366 | Msa0364870:CDS |
| GAGTTAGAGCCTACGATAGT+CGG | 0.564536 | 3_1:+58432568 | Msa0364870:CDS |
| ACTCTCGAGTTTCATGGATG+TGG | 0.564591 | 3_1:-58432726 | None:intergenic |
| CAAAATATAAATCCAAGGAT+AGG | 0.566379 | 3_1:+58431912 | Msa0364870:CDS |
| TTGAGGAAGCTTTGAAGCAG+GGG | 0.567473 | 3_1:+58434295 | Msa0364870:CDS |
| GGCTCTAGGTACCAGAGCCA+TGG | 0.568892 | 3_1:-58431511 | None:intergenic |
| CGGCAATGTTTCATCGTGGA+AGG | 0.571228 | 3_1:-58434157 | None:intergenic |
| CGTTGTAAGCTCTATAGAAG+AGG | 0.576704 | 3_1:+58432636 | Msa0364870:CDS |
| TGTTTCATCGTGGAAGGACA+TGG | 0.579172 | 3_1:-58434151 | None:intergenic |
| GTCCCCAAAATATAAATCCA+AGG | 0.580202 | 3_1:+58431907 | Msa0364870:CDS |
| GCCACCTTTGCACCTTCTGA+CGG | 0.581477 | 3_1:-58434177 | None:intergenic |
| GAGATTCGAATTTCGATGGA+TGG | 0.581534 | 3_1:+58434095 | Msa0364870:CDS |
| TATGCTGAGAAACATGGGTA+CGG | 0.582501 | 3_1:+58434264 | Msa0364870:CDS |
| GGTGTCCCTGAAAACCTCCC+AGG | 0.584409 | 3_1:-58432836 | None:intergenic |
| GATGTCATTCATGAAGAAAG+TGG | 0.586163 | 3_1:+58431807 | Msa0364870:CDS |
| ACCTAAGAAGTACTCCTGCA+TGG | 0.587436 | 3_1:-58432900 | None:intergenic |
| ACCGGAATAGTTTCGAGAGG+AGG | 0.587460 | 3_1:+58432949 | Msa0364870:CDS |
| GTGGCACTATCCATTGGTGA+TGG | 0.588590 | 3_1:+58433066 | Msa0364870:CDS |
| GGAACTAGCTCCATCTTCCA+TGG | 0.589016 | 3_1:+58431494 | Msa0364870:CDS |
| GTTGAGGAAGCTTTGAAGCA+GGG | 0.589019 | 3_1:+58434294 | Msa0364870:CDS |
| GAATTTCGCTTATGAGCACT+GGG | 0.590654 | 3_1:+58433011 | Msa0364870:CDS |
| CTTCTGACCTCACAAACTCT+GGG | 0.591661 | 3_1:-58432501 | None:intergenic |
| TCATCCCATTCTTGAGCGTG+TGG | 0.592866 | 3_1:-58434057 | None:intergenic |
| AGGTCTTAAACCATCACCAA+TGG | 0.593742 | 3_1:-58433076 | None:intergenic |
| GGAACTTTGATTGAGAAGCA+TGG | 0.599287 | 3_1:-58431410 | None:intergenic |
| GCCGTCAGAAGGTGCAAAGG+TGG | 0.600402 | 3_1:+58434176 | Msa0364870:CDS |
| ATCAGGAGAAGCAGGGTCAA+CGG | 0.601985 | 3_1:-58431592 | None:intergenic |
| CTTTACAGGTGATGAATGAA+GGG | 0.603289 | 3_1:+58433746 | Msa0364870:intron |
| GGAAAGCACTCCTCGAAGGA+CGG | 0.603615 | 3_1:-58431627 | None:intergenic |
| TGGGTACGGGGAGGATGTTG+AGG | 0.605732 | 3_1:+58434278 | Msa0364870:CDS |
| TCTTACATAAGTTCTAAGGA+AGG | 0.608799 | 3_1:+58434411 | Msa0364870:CDS |
| AGAACTCACTCGTAGAGCAT+GGG | 0.608989 | 3_1:+58433155 | Msa0364870:CDS |
| AAAGGACCAAGAGTGTAGAA+AGG | 0.610274 | 3_1:-58433838 | None:intergenic |
| AGCTCAACCCAGAGTTTGTG+AGG | 0.611324 | 3_1:+58432494 | Msa0364870:CDS |
| CGCGCAATAAAGCATCTCCT+CGG | 0.611466 | 3_1:-58432461 | None:intergenic |
| CTTACATAAGTTCTAAGGAA+GGG | 0.612945 | 3_1:+58434412 | Msa0364870:CDS |
| TGCTGAGAAACATGGGTACG+GGG | 0.613105 | 3_1:+58434266 | Msa0364870:CDS |
| GTGGGGAGCTGATACAGTCA+TGG | 0.615728 | 3_1:+58432687 | Msa0364870:CDS |
| ACATCCATGAAACTCGAGAG+TGG | 0.616555 | 3_1:+58432728 | Msa0364870:CDS |
| GTGAGGTCAGAAGTTGCTCG+TGG | 0.618370 | 3_1:+58432511 | Msa0364870:CDS |
| CTTTGGAAAGCACTCCTCGA+AGG | 0.619893 | 3_1:-58431631 | None:intergenic |
| TTGATTGAACAAGCTGAACA+AGG | 0.623641 | 3_1:+58432859 | Msa0364870:CDS |
| GCACATTTCTGCTCGATGTG+TGG | 0.624109 | 3_1:+58434198 | Msa0364870:CDS |
| AAGTTCCTTCCGACTATCGT+AGG | 0.624438 | 3_1:-58432577 | None:intergenic |
| CCACCGATTGAGAGAGTGAA+CGG | 0.626574 | 3_1:-58430018 | None:intergenic |
| CAGATGTACTATGCTAAGCA+GGG | 0.626592 | 3_1:+58432430 | Msa0364870:CDS |
| GAAAGTATGCTGAGAAACAT+GGG | 0.630479 | 3_1:+58434259 | Msa0364870:CDS |
| CAGGTGATGAATGAAGGGCC+AGG | 0.634433 | 3_1:+58433751 | Msa0364870:intron |
| ATGGGATGATGCCTTAAGCA+AGG | 0.635329 | 3_1:+58434071 | Msa0364870:CDS |
| TGCAGAAGATCTTACCTGGG+AGG | 0.635440 | 3_1:+58432822 | Msa0364870:CDS |
| CCGTTCACTCTCTCAATCGG+TGG | 0.636801 | 3_1:+58430018 | Msa0364870:five_prime_UTR |
| GTTCAATGGGCAACTATGTG+GGG | 0.639981 | 3_1:+58432670 | Msa0364870:CDS |
| AGGTGATGTGATCGTAACCA+GGG | 0.640270 | 3_1:-58433876 | None:intergenic |
| ATTGCCGTCAGAAGGTGCAA+AGG | 0.640952 | 3_1:+58434173 | Msa0364870:CDS |
| CTCTTCTATAGAGCTTACAA+CGG | 0.649465 | 3_1:-58432635 | None:intergenic |
| TATGATGTGGCACTATCCAT+TGG | 0.649646 | 3_1:+58433060 | Msa0364870:CDS |
| GCCAAACAGAGATGATGTGA+AGG | 0.651430 | 3_1:+58433978 | Msa0364870:CDS |
| GAAGAAAATCAGGAGAAGCA+GGG | 0.652132 | 3_1:-58431599 | None:intergenic |
| GCTGCGAAGAAAACGATCAG+TGG | 0.655933 | 3_1:+58434345 | Msa0364870:CDS |
| GAGGATCGATTCATGCAAAG+TGG | 0.658351 | 3_1:+58432968 | Msa0364870:CDS |
| TTCTATAGAGCTTACAACGG+CGG | 0.658608 | 3_1:-58432632 | None:intergenic |
| GAACAACATGGTGAAGCTGG+TGG | 0.662902 | 3_1:+58434369 | Msa0364870:CDS |
| GTTCTGCGTCGAGATGGCGT+CGG | 0.670521 | 3_1:+58431347 | Msa0364870:intron |
| ATTTGCAGCACCAATAGCAG+AGG | 0.676582 | 3_1:-58433896 | None:intergenic |
| CTGCTCTATGAAGATAACTG+AGG | 0.678362 | 3_1:+58434230 | Msa0364870:CDS |
| TAGAGCCTACGATAGTCGGA+AGG | 0.685636 | 3_1:+58432572 | Msa0364870:CDS |
| CGTCCAACAACGTCAAACCG+AGG | 0.694328 | 3_1:-58431450 | None:intergenic |
| AATTGCAGAAGATCTTACCT+GGG | 0.696780 | 3_1:+58432819 | Msa0364870:CDS |
| TTTGATAACTATGACACCAG+TGG | 0.702964 | 3_1:+58431885 | Msa0364870:CDS |
| ACGATCAGTGGAGAACAACA+TGG | 0.703526 | 3_1:+58434357 | Msa0364870:CDS |
| ATGACCGGAATAGTTTCGAG+AGG | 0.705079 | 3_1:+58432946 | Msa0364870:CDS |
| GGTGCATGCTAATGTGACAT+CGG | 0.705767 | 3_1:+58431368 | Msa0364870:CDS |
| CATTTGCAATCAGTATGATG+TGG | 0.707288 | 3_1:+58433047 | Msa0364870:CDS |
| CTGACGGCAATGTTTCATCG+TGG | 0.708024 | 3_1:-58434161 | None:intergenic |
| TGAGAAACATGGGTACGGGG+AGG | 0.720457 | 3_1:+58434269 | Msa0364870:CDS |
| GGTGATGTGATCGTAACCAG+GGG | 0.734207 | 3_1:-58433875 | None:intergenic |
| TGGAGGATCGAATGTCAATG+TGG | 0.751684 | 3_1:-58431532 | None:intergenic |
| TAAGCAGGGAATCATTACCG+AGG | 0.754822 | 3_1:+58432444 | Msa0364870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTGATAATATATATA+AGG | - | chr3_1:58433198-58433217 | None:intergenic | 10.0% |
| !! | TAGATAAATCTAAATCTAAT+TGG | + | chr3_1:58430543-58430562 | Msa0364870:intron | 15.0% |
| !! | AAAAAAATAAAAATATGAGG+AGG | + | chr3_1:58430667-58430686 | Msa0364870:intron | 15.0% |
| !!! | TCATAATATCTTTTTTGTAA+AGG | + | chr3_1:58430733-58430752 | Msa0364870:intron | 15.0% |
| !!! | CATAATATCTTTTTTGTAAA+GGG | + | chr3_1:58430734-58430753 | Msa0364870:intron | 15.0% |
| !!! | ATAATATCTTTTTTGTAAAG+GGG | + | chr3_1:58430735-58430754 | Msa0364870:intron | 15.0% |
| !! | ACATGATGATATATTAATTA+CGG | - | chr3_1:58431780-58431799 | None:intergenic | 15.0% |
| !! | GAAAATTGAATTAATTTAGT+TGG | + | chr3_1:58432318-58432337 | Msa0364870:intron | 15.0% |
| !!! | TTCTTATCATATTTGTTATA+TGG | + | chr3_1:58433303-58433322 | Msa0364870:intron | 15.0% |
| !!! | TTAAGTTGTTTATTTAAACA+GGG | - | chr3_1:58433524-58433543 | None:intergenic | 15.0% |
| !!! | ATTAAGTTGTTTATTTAAAC+AGG | - | chr3_1:58433525-58433544 | None:intergenic | 15.0% |
| !! | TTTATATACAAGAACTTATA+TGG | - | chr3_1:58433562-58433581 | None:intergenic | 15.0% |
| !! | ATAAATCAATTAAAGTGAGA+CGG | - | chr3_1:58430291-58430310 | None:intergenic | 20.0% |
| !!! | AAAAAGCATAATTGAGAATT+GGG | + | chr3_1:58430906-58430925 | Msa0364870:intron | 20.0% |
| !! | AGTTTGTACATATAACAAAA+TGG | - | chr3_1:58430977-58430996 | None:intergenic | 20.0% |
| !! | ATATCAAATGTTTAAACAAC+TGG | - | chr3_1:58431309-58431328 | None:intergenic | 20.0% |
| !!! | ACATACTTTTCAATATTAAC+AGG | + | chr3_1:58431693-58431712 | Msa0364870:intron | 20.0% |
| !!! | TATCCTTGGATTTATATTTT+GGG | - | chr3_1:58431913-58431932 | None:intergenic | 20.0% |
| !!! | ATATGATATGAGTCTTATAT+TGG | + | chr3_1:58432265-58432284 | Msa0364870:intron | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | - | chr3_1:58433384-58433403 | None:intergenic | 20.0% |
| !! | AAGTAAACAAAAAGAAATCA+TGG | - | chr3_1:58433719-58433738 | None:intergenic | 20.0% |
| !! | TTTTCTCATAACCTTATTCT+TGG | + | chr3_1:58430206-58430225 | Msa0364870:intron | 25.0% |
| !! | TGTAGTTTTTGTCAAAACTA+TGG | + | chr3_1:58430439-58430458 | Msa0364870:intron | 25.0% |
| ! | TTGATGCATGTTTGAATTAA+CGG | - | chr3_1:58430492-58430511 | None:intergenic | 25.0% |
| !!! | TGGTTTGTTTACAATAGTTA+TGG | + | chr3_1:58430563-58430582 | Msa0364870:intron | 25.0% |
| !!! | ATGGTGTTGTAAATTTTTGT+AGG | + | chr3_1:58430582-58430601 | Msa0364870:intron | 25.0% |
| ! | AAAGTATATGCATCACAATA+TGG | + | chr3_1:58430698-58430717 | Msa0364870:intron | 25.0% |
| !! | AATTTGTGTCTGGATATTTT+TGG | + | chr3_1:58430844-58430863 | Msa0364870:intron | 25.0% |
| !! | ATTTGTGTCTGGATATTTTT+GGG | + | chr3_1:58430845-58430864 | Msa0364870:intron | 25.0% |
| !! | CAAAAAGCATAATTGAGAAT+TGG | + | chr3_1:58430905-58430924 | Msa0364870:intron | 25.0% |
| ! | TAACAAAATGGAAGCAATAT+AGG | - | chr3_1:58430965-58430984 | None:intergenic | 25.0% |
| ! | AAAAGTGAGAATCATTCTTA+GGG | + | chr3_1:58431126-58431145 | Msa0364870:intron | 25.0% |
| ! | TAATGAAAACAAAGTATACC+TGG | - | chr3_1:58431670-58431689 | None:intergenic | 25.0% |
| ! | TAATATATCATCATGTTTCC+AGG | + | chr3_1:58431784-58431803 | Msa0364870:intron | 25.0% |
| ! | AATATATCATCATGTTTCCA+GGG | + | chr3_1:58431785-58431804 | Msa0364870:intron | 25.0% |
| !! | ATCCTTGGATTTATATTTTG+GGG | - | chr3_1:58431912-58431931 | None:intergenic | 25.0% |
| !! | CTATCCTTGGATTTATATTT+TGG | - | chr3_1:58431914-58431933 | None:intergenic | 25.0% |
| ! | CAAAATATAAATCCAAGGAT+AGG | + | chr3_1:58431912-58431931 | Msa0364870:CDS | 25.0% |
| !!! | TCATGTTTTTATTTTTGCCA+TGG | + | chr3_1:58431943-58431962 | Msa0364870:intron | 25.0% |
| ! | AAGATATAAAGAAAATGCCA+TGG | - | chr3_1:58431963-58431982 | None:intergenic | 25.0% |
| ! | TAAAAATGAAAATGCTCAGT+TGG | - | chr3_1:58432194-58432213 | None:intergenic | 25.0% |
| ! | TCGTTTCATGTATTTCAATT+AGG | + | chr3_1:58432343-58432362 | Msa0364870:intron | 25.0% |
| ! | CGTTTCATGTATTTCAATTA+GGG | + | chr3_1:58432344-58432363 | Msa0364870:intron | 25.0% |
| ! | ATTGATAGGAGAGAAAAAAT+CGG | + | chr3_1:58432391-58432410 | Msa0364870:CDS | 25.0% |
| ! | GATAAGAATGAAAAGAAATG+CGG | - | chr3_1:58433291-58433310 | None:intergenic | 25.0% |
| !! | TATGGTGATCTTATCTATTT+TGG | + | chr3_1:58433321-58433340 | Msa0364870:intron | 25.0% |
| !! | TTCAGTGTAATTAAAAGTGT+CGG | + | chr3_1:58433415-58433434 | Msa0364870:intron | 25.0% |
| ! | GATGATAGTCGAAATATATT+AGG | - | chr3_1:58433658-58433677 | None:intergenic | 25.0% |
| ! | AACTACCGTAAATATATTTC+TGG | + | chr3_1:58433690-58433709 | Msa0364870:intron | 25.0% |
| ! | TTAGAACTTATGTAAGATTC+TGG | - | chr3_1:58434408-58434427 | None:intergenic | 25.0% |
| ! | AGAATCTTACATAAGTTCTA+AGG | + | chr3_1:58434407-58434426 | Msa0364870:CDS | 25.0% |
| TCTTATCTGCAGAAATGAAA+TGG | - | chr3_1:58430044-58430063 | None:intergenic | 30.0% | |
| GCAATCAAAAACCAAGAATA+AGG | - | chr3_1:58430220-58430239 | None:intergenic | 30.0% | |
| !!! | ATTTTAGAGCAGTGAGATTA+AGG | + | chr3_1:58430240-58430259 | Msa0364870:intron | 30.0% |
| CATAATTAAGCATGCATGTT+TGG | + | chr3_1:58430365-58430384 | Msa0364870:intron | 30.0% | |
| TTTAAAAATGACCCCTTAAG+TGG | - | chr3_1:58430613-58430632 | None:intergenic | 30.0% | |
| GAAAAGTGAGAATCATTCTT+AGG | + | chr3_1:58431125-58431144 | Msa0364870:intron | 30.0% | |
| AAAGTGAGAATCATTCTTAG+GGG | + | chr3_1:58431127-58431146 | Msa0364870:intron | 30.0% | |
| !! | ATAGCAAGTTTGCTAACAAA+AGG | - | chr3_1:58431750-58431769 | None:intergenic | 30.0% |
| ! | ATGATTTTCATACCTATCCT+TGG | - | chr3_1:58431927-58431946 | None:intergenic | 30.0% |
| TTCTTTATATCTTGAGTCTG+TGG | + | chr3_1:58431970-58431989 | Msa0364870:intron | 30.0% | |
| TGAAGAATGTTAGACTAGTA+AGG | + | chr3_1:58432005-58432024 | Msa0364870:intron | 30.0% | |
| TAACCATTGTTGAATCAAAC+TGG | + | chr3_1:58432111-58432130 | Msa0364870:intron | 30.0% | |
| TTACTACATGCTATTCTATG+CGG | - | chr3_1:58432246-58432265 | None:intergenic | 30.0% | |
| TATAGAAGAGGAAGTTTACA+AGG | + | chr3_1:58432648-58432667 | Msa0364870:CDS | 30.0% | |
| TTCTCAAGTGCTTGATAAAT+AGG | - | chr3_1:58432790-58432809 | None:intergenic | 30.0% | |
| AATTCTCTTTGTGATAAGCT+AGG | - | chr3_1:58432996-58433015 | None:intergenic | 30.0% | |
| !! | TGTGTCATTTGCATCATAAA+TGG | - | chr3_1:58433106-58433125 | None:intergenic | 30.0% |
| GGTCTCCAGAAATATATTTA+CGG | - | chr3_1:58433698-58433717 | None:intergenic | 30.0% | |
| ! | TTTACTTTGAGCTACTTTAC+AGG | + | chr3_1:58433732-58433751 | Msa0364870:intron | 30.0% |
| TCTTCATAGAGCAGAATTTA+GGG | - | chr3_1:58434224-58434243 | None:intergenic | 30.0% | |
| ATCTTCATAGAGCAGAATTT+AGG | - | chr3_1:58434225-58434244 | None:intergenic | 30.0% | |
| !! | TCTTACATAAGTTCTAAGGA+AGG | + | chr3_1:58434411-58434430 | Msa0364870:CDS | 30.0% |
| !! | CTTACATAAGTTCTAAGGAA+GGG | + | chr3_1:58434412-58434431 | Msa0364870:CDS | 30.0% |
| TTTGTAGGTGATTCCACTTA+AGG | + | chr3_1:58430597-58430616 | Msa0364870:intron | 35.0% | |
| TTGTAGGTGATTCCACTTAA+GGG | + | chr3_1:58430598-58430617 | Msa0364870:intron | 35.0% | |
| !!! | ATCTTTTTTGTAAAGGGGCA+AGG | + | chr3_1:58430740-58430759 | Msa0364870:intron | 35.0% |
| ATCCAGACACAAATTCACAA+GGG | - | chr3_1:58430839-58430858 | None:intergenic | 35.0% | |
| TATCCAGACACAAATTCACA+AGG | - | chr3_1:58430840-58430859 | None:intergenic | 35.0% | |
| !! | CATTCTTAGGGGTTTTGATA+TGG | + | chr3_1:58431138-58431157 | Msa0364870:intron | 35.0% |
| GAGGCAAAAATGTAGAATTC+GGG | - | chr3_1:58431434-58431453 | None:intergenic | 35.0% | |
| CGAGGCAAAAATGTAGAATT+CGG | - | chr3_1:58431435-58431454 | None:intergenic | 35.0% | |
| ! | CGAATTCTACATTTTTGCCT+CGG | + | chr3_1:58431433-58431452 | Msa0364870:CDS | 35.0% |
| ! | GTTTTGTCTGCATTAGTTGT+TGG | - | chr3_1:58431555-58431574 | None:intergenic | 35.0% |
| GATGTCATTCATGAAGAAAG+TGG | + | chr3_1:58431807-58431826 | Msa0364870:CDS | 35.0% | |
| ! | TTTGATAACTATGACACCAG+TGG | + | chr3_1:58431885-58431904 | Msa0364870:CDS | 35.0% |
| !! | ATTTATATTTTGGGGACCAC+TGG | - | chr3_1:58431904-58431923 | None:intergenic | 35.0% |
| GTCCCCAAAATATAAATCCA+AGG | + | chr3_1:58431907-58431926 | Msa0364870:CDS | 35.0% | |
| AATGTTAGACTAGTAAGGAC+AGG | + | chr3_1:58432010-58432029 | Msa0364870:intron | 35.0% | |
| ATTGAAGAAACTCAGAGACA+AGG | - | chr3_1:58432041-58432060 | None:intergenic | 35.0% | |
| CTTCCAGTTTGATTCAACAA+TGG | - | chr3_1:58432117-58432136 | None:intergenic | 35.0% | |
| !! | AAACTGGAAGCATCATACTT+CGG | + | chr3_1:58432127-58432146 | Msa0364870:intron | 35.0% |
| AAAATGCTCAGTTGGCTAAT+TGG | - | chr3_1:58432186-58432205 | None:intergenic | 35.0% | |
| TAGTACATCTGAGTGAATCT+TGG | - | chr3_1:58432421-58432440 | None:intergenic | 35.0% | |
| GTGAAAGTGAATGCAAACAT+TGG | + | chr3_1:58432604-58432623 | Msa0364870:CDS | 35.0% | |
| CTCTTCTATAGAGCTTACAA+CGG | - | chr3_1:58432638-58432657 | None:intergenic | 35.0% | |
| AGGAAGTTTACAAGGTTCAA+TGG | + | chr3_1:58432656-58432675 | Msa0364870:CDS | 35.0% | |
| GGAAGTTTACAAGGTTCAAT+GGG | + | chr3_1:58432657-58432676 | Msa0364870:CDS | 35.0% | |
| CAAGCACTTGAGAAAGTTAA+CGG | + | chr3_1:58432796-58432815 | Msa0364870:CDS | 35.0% | |
| AATTGCAGAAGATCTTACCT+GGG | + | chr3_1:58432819-58432838 | Msa0364870:CDS | 35.0% | |
| ! | TTGTTCAGCTTGTTCAATCA+AGG | - | chr3_1:58432860-58432879 | None:intergenic | 35.0% |
| TTGATTGAACAAGCTGAACA+AGG | + | chr3_1:58432859-58432878 | Msa0364870:CDS | 35.0% | |
| CATTTGCAATCAGTATGATG+TGG | + | chr3_1:58433047-58433066 | Msa0364870:CDS | 35.0% | |
| TTTGCATCATAAATGGATCC+AGG | - | chr3_1:58433099-58433118 | None:intergenic | 35.0% | |
| GGGAAAAAATCTATGAAGCA+CGG | - | chr3_1:58433504-58433523 | None:intergenic | 35.0% | |
| ACTTTACAGGTGATGAATGA+AGG | + | chr3_1:58433745-58433764 | Msa0364870:intron | 35.0% | |
| CTTTACAGGTGATGAATGAA+GGG | + | chr3_1:58433746-58433765 | Msa0364870:intron | 35.0% | |
| !! | TTTTCAGGAATCTTGTGCAT+TGG | - | chr3_1:58433784-58433803 | None:intergenic | 35.0% |
| !!! | AGCTGTTTTTGCATGTTTTC+AGG | - | chr3_1:58433799-58433818 | None:intergenic | 35.0% |
| ACATGCAAAAACAGCTAGAA+TGG | + | chr3_1:58433803-58433822 | Msa0364870:CDS | 35.0% | |
| CATGTTTCTCAGCATACTTT+CGG | - | chr3_1:58434260-58434279 | None:intergenic | 35.0% | |
| ! | GAAAGTATGCTGAGAAACAT+GGG | + | chr3_1:58434259-58434278 | Msa0364870:CDS | 35.0% |
| AAGGAGAAATTGAGCTTGCA+TGG | + | chr3_1:58430259-58430278 | Msa0364870:intron | 40.0% | |
| AGCATGCATGTTTGGATTTG+TGG | + | chr3_1:58430373-58430392 | Msa0364870:intron | 40.0% | |
| TGTAGGTGATTCCACTTAAG+GGG | + | chr3_1:58430599-58430618 | Msa0364870:intron | 40.0% | |
| !! | GCATCACAATATGGCTTGTT+TGG | + | chr3_1:58430707-58430726 | Msa0364870:intron | 40.0% |
| TCCAGACACAAATTCACAAG+GGG | - | chr3_1:58430838-58430857 | None:intergenic | 40.0% | |
| GGGAAATTGACAATGATGTG+TGG | + | chr3_1:58430926-58430945 | Msa0364870:intron | 40.0% | |
| TAACCAAATGTGTCAGTGTC+AGG | - | chr3_1:58431074-58431093 | None:intergenic | 40.0% | |
| ! | ACATCGGTTGTTTGCAAGAA+TGG | + | chr3_1:58431384-58431403 | Msa0364870:CDS | 40.0% |
| GGAACTTTGATTGAGAAGCA+TGG | - | chr3_1:58431413-58431432 | None:intergenic | 40.0% | |
| CACTTCAAATGCTTGGAAGA+AGG | + | chr3_1:58431473-58431492 | Msa0364870:CDS | 40.0% | |
| TTGTCTGCATTAGTTGTTGG+AGG | - | chr3_1:58431552-58431571 | None:intergenic | 40.0% | |
| ! | AACGGTGTGCTTCTTTTGTT+TGG | - | chr3_1:58431577-58431596 | None:intergenic | 40.0% |
| GAAGAAAATCAGGAGAAGCA+GGG | - | chr3_1:58431602-58431621 | None:intergenic | 40.0% | |
| ! | CTGGATTCTTTTGTGCTCTT+TGG | - | chr3_1:58431651-58431670 | None:intergenic | 40.0% |
| ! | CAAAGAGCACAAAAGAATCC+AGG | + | chr3_1:58431649-58431668 | Msa0364870:CDS | 40.0% |
| TTCTTCATGAATGACATCCC+TGG | - | chr3_1:58431805-58431824 | None:intergenic | 40.0% | |
| TTTCGTCAATTGAGAACACG+TGG | - | chr3_1:58432077-58432096 | None:intergenic | 40.0% | |
| TCTATGCGGAAAAACAAGTG+TGG | - | chr3_1:58432232-58432251 | None:intergenic | 40.0% | |
| ! | TCCAGTCTTTGCGCAATTTT+GGG | - | chr3_1:58432372-58432391 | None:intergenic | 40.0% |
| ! | ATCCAGTCTTTGCGCAATTT+TGG | - | chr3_1:58432373-58432392 | None:intergenic | 40.0% |
| TCAGATGTACTATGCTAAGC+AGG | + | chr3_1:58432429-58432448 | Msa0364870:CDS | 40.0% | |
| CAGATGTACTATGCTAAGCA+GGG | + | chr3_1:58432430-58432449 | Msa0364870:CDS | 40.0% | |
| TAACTCCAAGTGCTTCTTGT+TGG | - | chr3_1:58432554-58432573 | None:intergenic | 40.0% | |
| ! | GATAGTCGGAAGGAACTTTT+TGG | + | chr3_1:58432582-58432601 | Msa0364870:CDS | 40.0% |
| TTCTATAGAGCTTACAACGG+CGG | - | chr3_1:58432635-58432654 | None:intergenic | 40.0% | |
| CGTTGTAAGCTCTATAGAAG+AGG | + | chr3_1:58432636-58432655 | Msa0364870:CDS | 40.0% | |
| TAAATAGGTACAGTCCCAAC+TGG | - | chr3_1:58432775-58432794 | None:intergenic | 40.0% | |
| GAATTGCAGAAGATCTTACC+TGG | + | chr3_1:58432818-58432837 | Msa0364870:CDS | 40.0% | |
| GTCATACGCTTTGCAGTTAA+AGG | - | chr3_1:58432931-58432950 | None:intergenic | 40.0% | |
| TTAACTGCAAAGCGTATGAC+CGG | + | chr3_1:58432931-58432950 | Msa0364870:CDS | 40.0% | |
| AGAATTTCGCTTATGAGCAC+TGG | + | chr3_1:58433010-58433029 | Msa0364870:CDS | 40.0% | |
| GAATTTCGCTTATGAGCACT+GGG | + | chr3_1:58433011-58433030 | Msa0364870:CDS | 40.0% | |
| TATGATGTGGCACTATCCAT+TGG | + | chr3_1:58433060-58433079 | Msa0364870:CDS | 40.0% | |
| AGGTCTTAAACCATCACCAA+TGG | - | chr3_1:58433079-58433098 | None:intergenic | 40.0% | |
| !! | ATTGGTGATGGTTTAAGACC+TGG | + | chr3_1:58433078-58433097 | Msa0364870:CDS | 40.0% |
| TTCTCCTTGTGTCAAAAGCT+CGG | - | chr3_1:58433139-58433158 | None:intergenic | 40.0% | |
| !!! | CTATTTTGGCCTATGAAGCA+TGG | + | chr3_1:58433335-58433354 | Msa0364870:intron | 40.0% |
| TGTCCATATCCATGCTTCAT+AGG | - | chr3_1:58433347-58433366 | None:intergenic | 40.0% | |
| TATGAAGCATGGATATGGAC+AGG | + | chr3_1:58433346-58433365 | Msa0364870:intron | 40.0% | |
| ATGAAGCATGGATATGGACA+GGG | + | chr3_1:58433347-58433366 | Msa0364870:intron | 40.0% | |
| !! | TAAAAGTGTCGGTGTTGTGT+CGG | + | chr3_1:58433426-58433445 | Msa0364870:intron | 40.0% |
| ! | AAAGGACCAAGAGTGTAGAA+AGG | - | chr3_1:58433841-58433860 | None:intergenic | 40.0% |
| !! | GCTATTGGTGCTGCAAATAT+CGG | + | chr3_1:58433901-58433920 | Msa0364870:CDS | 40.0% |
| GTGACTCCAAAAGAACATCT+CGG | + | chr3_1:58433952-58433971 | Msa0364870:CDS | 40.0% | |
| TGACTCCAAAAGAACATCTC+GGG | + | chr3_1:58433953-58433972 | Msa0364870:CDS | 40.0% | |
| GAGATTCGAATTTCGATGGA+TGG | + | chr3_1:58434095-58434114 | Msa0364870:CDS | 40.0% | |
| GATCCAATGACAAAGCAAAC+TGG | - | chr3_1:58434122-58434141 | None:intergenic | 40.0% | |
| CTGCTCTATGAAGATAACTG+AGG | + | chr3_1:58434230-58434249 | Msa0364870:CDS | 40.0% | |
| ! | CGAAAGTATGCTGAGAAACA+TGG | + | chr3_1:58434258-58434277 | Msa0364870:CDS | 40.0% |
| TATGCTGAGAAACATGGGTA+CGG | + | chr3_1:58434264-58434283 | Msa0364870:CDS | 40.0% | |
| GAACCGTTCACTCTCTCAAT+CGG | + | chr3_1:58430015-58430034 | Msa0364870:five_prime_UTR | 45.0% | |
| ACCCCTTGTGAATTTGTGTC+TGG | + | chr3_1:58430834-58430853 | Msa0364870:intron | 45.0% | |
| TATAGCACCAACACTTCAGC+TGG | + | chr3_1:58430998-58431017 | Msa0364870:intron | 45.0% | |
| ACACCTGACACTGACACATT+TGG | + | chr3_1:58431068-58431087 | Msa0364870:intron | 45.0% | |
| ! | TTTGTAGTTCTGCGTCGAGA+TGG | + | chr3_1:58431341-58431360 | Msa0364870:intron | 45.0% |
| GGTGCATGCTAATGTGACAT+CGG | + | chr3_1:58431368-58431387 | Msa0364870:CDS | 45.0% | |
| TTGGACGCACTTCAAATGCT+TGG | + | chr3_1:58431466-58431485 | Msa0364870:CDS | 45.0% | |
| TCGAATGTCAATGTGGCTCT+AGG | - | chr3_1:58431528-58431547 | None:intergenic | 45.0% | |
| TGGAGGATCGAATGTCAATG+TGG | - | chr3_1:58431535-58431554 | None:intergenic | 45.0% | |
| GGAAGAAAATCAGGAGAAGC+AGG | - | chr3_1:58431603-58431622 | None:intergenic | 45.0% | |
| GACGGAAGTGGAAGAAAATC+AGG | - | chr3_1:58431612-58431631 | None:intergenic | 45.0% | |
| GACAAGTGAACTCGTCGAAA+TGG | - | chr3_1:58431849-58431868 | None:intergenic | 45.0% | |
| TTTCGACGAGTTCACTTGTC+TGG | + | chr3_1:58431849-58431868 | Msa0364870:CDS | 45.0% | |
| TCCCAAAATTGCGCAAAGAC+TGG | + | chr3_1:58432368-58432387 | Msa0364870:CDS | 45.0% | |
| TGCGCAAAGACTGGATTGAT+AGG | + | chr3_1:58432377-58432396 | Msa0364870:CDS | 45.0% | |
| TAAGCAGGGAATCATTACCG+AGG | + | chr3_1:58432444-58432463 | Msa0364870:CDS | 45.0% | |
| CTTCTGACCTCACAAACTCT+GGG | - | chr3_1:58432504-58432523 | None:intergenic | 45.0% | |
| ACTTCTGACCTCACAAACTC+TGG | - | chr3_1:58432505-58432524 | None:intergenic | 45.0% | |
| CCAAGTGCTTCTTGTTGGAA+GGG | - | chr3_1:58432549-58432568 | None:intergenic | 45.0% | |
| TCCAAGTGCTTCTTGTTGGA+AGG | - | chr3_1:58432550-58432569 | None:intergenic | 45.0% | |
| GAGTTAGAGCCTACGATAGT+CGG | + | chr3_1:58432568-58432587 | Msa0364870:CDS | 45.0% | |
| AAGTTCCTTCCGACTATCGT+AGG | - | chr3_1:58432580-58432599 | None:intergenic | 45.0% | |
| AGGTTCAATGGGCAACTATG+TGG | + | chr3_1:58432668-58432687 | Msa0364870:CDS | 45.0% | |
| GGTTCAATGGGCAACTATGT+GGG | + | chr3_1:58432669-58432688 | Msa0364870:CDS | 45.0% | |
| GTTCAATGGGCAACTATGTG+GGG | + | chr3_1:58432670-58432689 | Msa0364870:CDS | 45.0% | |
| ACAGTCATGGATCTCTCAAC+TGG | + | chr3_1:58432700-58432719 | Msa0364870:CDS | 45.0% | |
| ACTCTCGAGTTTCATGGATG+TGG | - | chr3_1:58432729-58432748 | None:intergenic | 45.0% | |
| ACATCCATGAAACTCGAGAG+TGG | + | chr3_1:58432728-58432747 | Msa0364870:CDS | 45.0% | |
| AGATCCACTCTCGAGTTTCA+TGG | - | chr3_1:58432735-58432754 | None:intergenic | 45.0% | |
| ! | ATCTTACCTGGGAGGTTTTC+AGG | + | chr3_1:58432830-58432849 | Msa0364870:CDS | 45.0% |
| ! | TCTTACCTGGGAGGTTTTCA+GGG | + | chr3_1:58432831-58432850 | Msa0364870:CDS | 45.0% |
| GATTACTTCACCATCCATGC+AGG | + | chr3_1:58432886-58432905 | Msa0364870:CDS | 45.0% | |
| !! | AAGAAGTACTCCTGCATGGA+TGG | - | chr3_1:58432899-58432918 | None:intergenic | 45.0% |
| !! | TCCATGCAGGAGTACTTCTT+AGG | + | chr3_1:58432899-58432918 | Msa0364870:CDS | 45.0% |
| !! | ACCTAAGAAGTACTCCTGCA+TGG | - | chr3_1:58432903-58432922 | None:intergenic | 45.0% |
| ATGACCGGAATAGTTTCGAG+AGG | + | chr3_1:58432946-58432965 | Msa0364870:CDS | 45.0% | |
| TCCTCCTCTCGAAACTATTC+CGG | - | chr3_1:58432953-58432972 | None:intergenic | 45.0% | |
| ! | GAGGATCGATTCATGCAAAG+TGG | + | chr3_1:58432968-58432987 | Msa0364870:CDS | 45.0% |
| ! | TTTGCCGAGCTTTTGACACA+AGG | + | chr3_1:58433132-58433151 | Msa0364870:CDS | 45.0% |
| AGAACTCACTCGTAGAGCAT+GGG | + | chr3_1:58433155-58433174 | Msa0364870:CDS | 45.0% | |
| AGCATGGGAAAAGGATGTAC+AGG | + | chr3_1:58433170-58433189 | Msa0364870:CDS | 45.0% | |
| TGGCCTATGAAGCATGGATA+TGG | + | chr3_1:58433341-58433360 | Msa0364870:intron | 45.0% | |
| TTGTGCATTGGAACATGTCC+TGG | - | chr3_1:58433772-58433791 | None:intergenic | 45.0% | |
| ! | GAAGCACCTTTCTACACTCT+TGG | + | chr3_1:58433832-58433851 | Msa0364870:CDS | 45.0% |
| ! | GGGGCAATATCGGTTGTTAA+AGG | - | chr3_1:58433859-58433878 | None:intergenic | 45.0% |
| TTAACAACCGATATTGCCCC+TGG | + | chr3_1:58433859-58433878 | Msa0364870:CDS | 45.0% | |
| ATCGTAACCAGGGGCAATAT+CGG | - | chr3_1:58433869-58433888 | None:intergenic | 45.0% | |
| AGGTGATGTGATCGTAACCA+GGG | - | chr3_1:58433879-58433898 | None:intergenic | 45.0% | |
| GATCACATCACCTCTGCTAT+TGG | + | chr3_1:58433886-58433905 | Msa0364870:CDS | 45.0% | |
| ATTTGCAGCACCAATAGCAG+AGG | - | chr3_1:58433899-58433918 | None:intergenic | 45.0% | |
| GCCAAACAGAGATGATGTGA+AGG | + | chr3_1:58433978-58433997 | Msa0364870:CDS | 45.0% | |
| GCCTTCACATCATCTCTGTT+TGG | - | chr3_1:58433982-58434001 | None:intergenic | 45.0% | |
| AACAGAGATGATGTGAAGGC+TGG | + | chr3_1:58433982-58434001 | Msa0364870:CDS | 45.0% | |
| TTGAGCGTGTGGATGTTGTT+TGG | - | chr3_1:58434049-58434068 | None:intergenic | 45.0% | |
| AACATCCACACGCTCAAGAA+TGG | + | chr3_1:58434052-58434071 | Msa0364870:CDS | 45.0% | |
| ACATCCACACGCTCAAGAAT+GGG | + | chr3_1:58434053-58434072 | Msa0364870:CDS | 45.0% | |
| ATGGGATGATGCCTTAAGCA+AGG | + | chr3_1:58434071-58434090 | Msa0364870:CDS | 45.0% | |
| TTCGAATCTCGCCTTGCTTA+AGG | - | chr3_1:58434085-58434104 | None:intergenic | 45.0% | |
| AGGCGAGATTCGAATTTCGA+TGG | + | chr3_1:58434091-58434110 | Msa0364870:CDS | 45.0% | |
| ! | GGACCAGTTTGCTTTGTCAT+TGG | + | chr3_1:58434116-58434135 | Msa0364870:CDS | 45.0% |
| TGTTTCATCGTGGAAGGACA+TGG | - | chr3_1:58434154-58434173 | None:intergenic | 45.0% | |
| GATGAAACATTGCCGTCAGA+AGG | + | chr3_1:58434165-58434184 | Msa0364870:CDS | 45.0% | |
| ATGCTGAGAAACATGGGTAC+GGG | + | chr3_1:58434265-58434284 | Msa0364870:CDS | 45.0% | |
| !! | TGTTGAGGAAGCTTTGAAGC+AGG | + | chr3_1:58434293-58434312 | Msa0364870:CDS | 45.0% |
| !! | GTTGAGGAAGCTTTGAAGCA+GGG | + | chr3_1:58434294-58434313 | Msa0364870:CDS | 45.0% |
| !! | TTGAGGAAGCTTTGAAGCAG+GGG | + | chr3_1:58434295-58434314 | Msa0364870:CDS | 45.0% |
| ACGATCAGTGGAGAACAACA+TGG | + | chr3_1:58434357-58434376 | Msa0364870:CDS | 45.0% | |
| !! | TTAAAAAAAATAAAAATATG+AGG | + | chr3_1:58430664-58430683 | Msa0364870:intron | 5.0% |
| ! | CCACCGATTGAGAGAGTGAA+CGG | - | chr3_1:58430021-58430040 | None:intergenic | 50.0% |
| GCAGATAAGACCAGCTTCTC+AGG | + | chr3_1:58430054-58430073 | Msa0364870:five_prime_UTR | 50.0% | |
| ACACCTTCCAGCTGAAGTGT+TGG | - | chr3_1:58431008-58431027 | None:intergenic | 50.0% | |
| TGTCAGTGTCAGGTGTGTCT+CGG | - | chr3_1:58431064-58431083 | None:intergenic | 50.0% | |
| ! | TTGCCTCGGTTTGACGTTGT+TGG | + | chr3_1:58431447-58431466 | Msa0364870:CDS | 50.0% |
| GGAACTAGCTCCATCTTCCA+TGG | + | chr3_1:58431494-58431513 | Msa0364870:CDS | 50.0% | |
| ATCAGGAGAAGCAGGGTCAA+CGG | - | chr3_1:58431595-58431614 | None:intergenic | 50.0% | |
| !! | CTTTGGAAAGCACTCCTCGA+AGG | - | chr3_1:58431634-58431653 | None:intergenic | 50.0% |
| ! | CGCGCAATAAAGCATCTCCT+CGG | - | chr3_1:58432464-58432483 | None:intergenic | 50.0% |
| AGCTCAACCCAGAGTTTGTG+AGG | + | chr3_1:58432494-58432513 | Msa0364870:CDS | 50.0% | |
| !! | CCCTTCCAACAAGAAGCACT+TGG | + | chr3_1:58432546-58432565 | Msa0364870:CDS | 50.0% |
| TAGAGCCTACGATAGTCGGA+AGG | + | chr3_1:58432572-58432591 | Msa0364870:CDS | 50.0% | |
| GCAACTCTGCTGTACCAGTT+GGG | + | chr3_1:58432758-58432777 | Msa0364870:CDS | 50.0% | |
| TGCAGAAGATCTTACCTGGG+AGG | + | chr3_1:58432822-58432841 | Msa0364870:CDS | 50.0% | |
| ACCGGAATAGTTTCGAGAGG+AGG | + | chr3_1:58432949-58432968 | Msa0364870:CDS | 50.0% | |
| GTGGCACTATCCATTGGTGA+TGG | + | chr3_1:58433066-58433085 | Msa0364870:CDS | 50.0% | |
| GAGAACTCACTCGTAGAGCA+TGG | + | chr3_1:58433154-58433173 | Msa0364870:CDS | 50.0% | |
| CACTCGTAGAGCATGGGAAA+AGG | + | chr3_1:58433161-58433180 | Msa0364870:CDS | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | chr3_1:58433493-58433512 | None:intergenic | 50.0% | |
| GGTGATGTGATCGTAACCAG+GGG | - | chr3_1:58433878-58433897 | None:intergenic | 50.0% | |
| GAGGTGATGTGATCGTAACC+AGG | - | chr3_1:58433880-58433899 | None:intergenic | 50.0% | |
| ! | GGCAACCCGAGATGTTCTTT+TGG | - | chr3_1:58433961-58433980 | None:intergenic | 50.0% |
| TCATCCCATTCTTGAGCGTG+TGG | - | chr3_1:58434060-58434079 | None:intergenic | 50.0% | |
| TGGAAGGACATGGCTGTCAT+TGG | - | chr3_1:58434144-58434163 | None:intergenic | 50.0% | |
| CGGCAATGTTTCATCGTGGA+AGG | - | chr3_1:58434160-58434179 | None:intergenic | 50.0% | |
| CTGACGGCAATGTTTCATCG+TGG | - | chr3_1:58434164-58434183 | None:intergenic | 50.0% | |
| ! | ATTGCCGTCAGAAGGTGCAA+AGG | + | chr3_1:58434173-58434192 | Msa0364870:CDS | 50.0% |
| GCACATTTCTGCTCGATGTG+TGG | + | chr3_1:58434198-58434217 | Msa0364870:CDS | 50.0% | |
| TGCTGAGAAACATGGGTACG+GGG | + | chr3_1:58434266-58434285 | Msa0364870:CDS | 50.0% | |
| GCTGCGAAGAAAACGATCAG+TGG | + | chr3_1:58434345-58434364 | Msa0364870:CDS | 50.0% | |
| GGAGAACAACATGGTGAAGC+TGG | + | chr3_1:58434366-58434385 | Msa0364870:CDS | 50.0% | |
| GAACAACATGGTGAAGCTGG+TGG | + | chr3_1:58434369-58434388 | Msa0364870:CDS | 50.0% | |
| CCGTTCACTCTCTCAATCGG+TGG | + | chr3_1:58430018-58430037 | Msa0364870:five_prime_UTR | 55.0% | |
| GAGAGAGAGACCTGAGAAGC+TGG | - | chr3_1:58430067-58430086 | None:intergenic | 55.0% | |
| GCACCAACACTTCAGCTGGA+AGG | + | chr3_1:58431002-58431021 | Msa0364870:intron | 55.0% | |
| TGTCGACACTGACAGGTGTC+GGG | - | chr3_1:58431040-58431059 | None:intergenic | 55.0% | |
| ! | GTGTCGACACTGACAGGTGT+CGG | - | chr3_1:58431041-58431060 | None:intergenic | 55.0% |
| GTCAGTGTCAGGTGTGTCTC+GGG | - | chr3_1:58431063-58431082 | None:intergenic | 55.0% | |
| CGTCCAACAACGTCAAACCG+AGG | - | chr3_1:58431453-58431472 | None:intergenic | 55.0% | |
| AGCTCCATCTTCCATGGCTC+TGG | + | chr3_1:58431500-58431519 | Msa0364870:CDS | 55.0% | |
| GGTACCAGAGCCATGGAAGA+TGG | - | chr3_1:58431507-58431526 | None:intergenic | 55.0% | |
| TCTTCCACTTCCGTCCTTCG+AGG | + | chr3_1:58431617-58431636 | Msa0364870:CDS | 55.0% | |
| !! | GGAAAGCACTCCTCGAAGGA+CGG | - | chr3_1:58431630-58431649 | None:intergenic | 55.0% |
| GTGAGGTCAGAAGTTGCTCG+TGG | + | chr3_1:58432511-58432530 | Msa0364870:CDS | 55.0% | |
| GTGGGGAGCTGATACAGTCA+TGG | + | chr3_1:58432687-58432706 | Msa0364870:CDS | 55.0% | |
| CGCAACTCTGCTGTACCAGT+TGG | + | chr3_1:58432757-58432776 | Msa0364870:CDS | 55.0% | |
| !! | TGTCGGTGTTGTGTCGGTGT+CGG | + | chr3_1:58433432-58433451 | Msa0364870:intron | 55.0% |
| GATTAGGCGTGTCCCAGTGT+CGG | - | chr3_1:58433471-58433490 | None:intergenic | 55.0% | |
| CAGGTGATGAATGAAGGGCC+AGG | + | chr3_1:58433751-58433770 | Msa0364870:intron | 55.0% | |
| GCTGCAAATATCGGCGCACT+TGG | + | chr3_1:58433910-58433929 | Msa0364870:CDS | 55.0% | |
| GCCACCTTTGCACCTTCTGA+CGG | - | chr3_1:58434180-58434199 | None:intergenic | 55.0% | |
| TGAGAAACATGGGTACGGGG+AGG | + | chr3_1:58434269-58434288 | Msa0364870:CDS | 55.0% | |
| !! | TCTCGGGTGTCGACACTGAC+AGG | - | chr3_1:58431047-58431066 | None:intergenic | 60.0% |
| GTTCTGCGTCGAGATGGCGT+CGG | + | chr3_1:58431347-58431366 | Msa0364870:intron | 60.0% | |
| !! | GGCTCTAGGTACCAGAGCCA+TGG | - | chr3_1:58431514-58431533 | None:intergenic | 60.0% |
| CACTCCTCGAAGGACGGAAG+TGG | - | chr3_1:58431624-58431643 | None:intergenic | 60.0% | |
| GGTGTCCCTGAAAACCTCCC+AGG | - | chr3_1:58432839-58432858 | None:intergenic | 60.0% | |
| ACACGACACGTGTCCGACAC+TGG | + | chr3_1:58433455-58433474 | Msa0364870:intron | 60.0% | |
| CACGACACGTGTCCGACACT+GGG | + | chr3_1:58433456-58433475 | Msa0364870:intron | 60.0% | |
| ACTGGGACACGCCTAATCCG+AGG | + | chr3_1:58433473-58433492 | Msa0364870:intron | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | - | chr3_1:58433487-58433506 | None:intergenic | 60.0% | |
| ! | GCCGTCAGAAGGTGCAAAGG+TGG | + | chr3_1:58434176-58434195 | Msa0364870:CDS | 60.0% |
| TGGGTACGGGGAGGATGTTG+AGG | + | chr3_1:58434278-58434297 | Msa0364870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 58430012 | 58434437 | 58430012 | ID=Msa0364870;Name=Msa0364870 |
| chr3_1 | mRNA | 58430012 | 58434437 | 58430012 | ID=Msa0364870-mRNA-1;Parent=Msa0364870;Name=Msa0364870-mRNA-1;_AED=0.18;_eAED=0.18;_QI=76|1|0.8|1|0.75|0.6|5|0|649 |
| chr3_1 | exon | 58430012 | 58430075 | 58430012 | ID=Msa0364870-mRNA-1:exon:11066;Parent=Msa0364870-mRNA-1 |
| chr3_1 | exon | 58431348 | 58431670 | 58431348 | ID=Msa0364870-mRNA-1:exon:11067;Parent=Msa0364870-mRNA-1 |
| chr3_1 | exon | 58431806 | 58431933 | 58431806 | ID=Msa0364870-mRNA-1:exon:11068;Parent=Msa0364870-mRNA-1 |
| chr3_1 | exon | 58432365 | 58433191 | 58432365 | ID=Msa0364870-mRNA-1:exon:11069;Parent=Msa0364870-mRNA-1 |
| chr3_1 | exon | 58433754 | 58434437 | 58433754 | ID=Msa0364870-mRNA-1:exon:11070;Parent=Msa0364870-mRNA-1 |
| chr3_1 | five_prime_UTR | 58430012 | 58430075 | 58430012 | ID=Msa0364870-mRNA-1:five_prime_utr;Parent=Msa0364870-mRNA-1 |
| chr3_1 | five_prime_UTR | 58431348 | 58431359 | 58431348 | ID=Msa0364870-mRNA-1:five_prime_utr;Parent=Msa0364870-mRNA-1 |
| chr3_1 | CDS | 58431360 | 58431670 | 58431360 | ID=Msa0364870-mRNA-1:cds;Parent=Msa0364870-mRNA-1 |
| chr3_1 | CDS | 58431806 | 58431933 | 58431806 | ID=Msa0364870-mRNA-1:cds;Parent=Msa0364870-mRNA-1 |
| chr3_1 | CDS | 58432365 | 58433191 | 58432365 | ID=Msa0364870-mRNA-1:cds;Parent=Msa0364870-mRNA-1 |
| chr3_1 | CDS | 58433754 | 58434437 | 58433754 | ID=Msa0364870-mRNA-1:cds;Parent=Msa0364870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
