AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452860 MtrunA17_Chr5g0400591 93.261 371 2 1 1 348 1 371 0.0 701
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452860 AT2G35260.1 65.269 334 77 7 24 325 32 358 4.51e-134 387
Msa1452860 AT4G17840.1 68.905 283 65 1 89 348 139 421 1.14e-131 382

Find 98 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAAGCAAAGATTGTAAT+TGG 0.146192 tig0034173:-25346 None:intergenic
TGCTTTGTTTCAGGGATTTA+TGG 0.164753 tig0034173:+22435 Msa1452860:intron
TGCTCTACAAAGACTGATTT+TGG 0.172656 tig0034173:+25106 Msa1452860:three_prime_UTR
ACATGACACGATGAAGTTTA+AGG 0.200475 tig0034173:-21661 None:intergenic
GATTTACTCAACTGTTATAT+TGG 0.204944 tig0034173:+24985 Msa1452860:CDS
TTAAGGTTTGAGGTTGAAAT+TGG 0.220673 tig0034173:-21644 None:intergenic
CTATGGCATGTCCCCTTTGC+AGG 0.237654 tig0034173:+23141 Msa1452860:CDS
CTTCTACAGGGCTGCAGTTC+AGG 0.247355 tig0034173:+23296 Msa1452860:CDS
TGCTGCTGACTTTCCTGTTT+GGG 0.252831 tig0034173:+22116 Msa1452860:CDS
ATATGCAGTTCCTCCAATTA+TGG 0.280024 tig0034173:+22557 Msa1452860:CDS
TTTCTTCTGATTTGAGTTGT+TGG 0.290631 tig0034173:-25060 None:intergenic
CCCACTTCTGGAAGGACTAT+TGG 0.291896 tig0034173:+24794 Msa1452860:CDS
GTGCTGCTGACTTTCCTGTT+TGG 0.306301 tig0034173:+22115 Msa1452860:CDS
TTATATTGGGACATGGTCTT+TGG 0.310446 tig0034173:+24999 Msa1452860:CDS
GTACTTACAGCTGTCCTTAC+TGG 0.313443 tig0034173:+23954 Msa1452860:CDS
ATTTACTCAACTGTTATATT+GGG 0.314030 tig0034173:+24986 Msa1452860:CDS
GATGCTATTGTTCAAGGGCT+TGG 0.328172 tig0034173:+22534 Msa1452860:CDS
TTACTGGAATTGACTCTCTT+GGG 0.331878 tig0034173:+22493 Msa1452860:CDS
TGTCTCACCTCTGTCATCTA+TGG 0.342156 tig0034173:-22019 None:intergenic
ATGTAGAGGATGAAGAACTA+TGG 0.367296 tig0034173:+23110 Msa1452860:CDS
TATGGTGCTATGGCTGTTGC+GGG 0.376737 tig0034173:+22453 Msa1452860:CDS
ATTACTGGAATTGACTCTCT+TGG 0.377179 tig0034173:+22492 Msa1452860:CDS
TTGTTGTTCATGTTGAGGTT+TGG 0.408486 tig0034173:-21772 None:intergenic
CAATAGCATCTAATGATAGA+TGG 0.409928 tig0034173:-22521 None:intergenic
TCATTAGATGCTATTGTTCA+AGG 0.413215 tig0034173:+22528 Msa1452860:CDS
AGAGCATTTCAAAATCTAGT+TGG 0.419832 tig0034173:-25089 None:intergenic
CTTCAAGAGTTGTTTCTGTT+CGG 0.420358 tig0034173:+21962 Msa1452860:CDS
TTTATCAAATTACCTGCAAA+GGG 0.425420 tig0034173:-23153 None:intergenic
CTAGCACGAGATTGTAAAAC+AGG 0.433223 tig0034173:-24137 None:intergenic
AATTTCATCAAAGGAAGAAA+AGG 0.433452 tig0034173:+21923 Msa1452860:CDS
TACTGGTTCTCTCTATTATG+TGG 0.435452 tig0034173:+23971 Msa1452860:CDS
TTAAAGCAAAGATTGTAATT+GGG 0.443507 tig0034173:-25345 None:intergenic
GACAGAGGTGAGACAAGAAC+CGG 0.445196 tig0034173:+22027 Msa1452860:CDS
GCTGCAAGTGCCTGAGCAAA+TGG 0.445585 tig0034173:-23930 None:intergenic
TGCTGCAAGTTCGGTGGGAG+AGG 0.446375 tig0034173:+23269 Msa1452860:CDS
TGGGAGAGGAGCTCTTCTAC+AGG 0.448169 tig0034173:+23283 Msa1452860:CDS
TAAATCCCATGTGTGATAAT+CGG 0.449306 tig0034173:-24968 None:intergenic
ATCTCTAATGGCACGGGCAT+AGG 0.451890 tig0034173:-23089 None:intergenic
ACCATTTGTTCCATTTGCTC+AGG 0.457763 tig0034173:+23920 Msa1452860:CDS
TGAGAGAGTGAAGTTGAAGA+AGG 0.458614 tig0034173:-21883 None:intergenic
ACGATGAAGTTTAAGGTTTG+AGG 0.460432 tig0034173:-21654 None:intergenic
TTCATCCTCTACATCTCTAA+TGG 0.465534 tig0034173:-23101 None:intergenic
AGTGAAGTTGAAGAAGGGTT+TGG 0.467254 tig0034173:-21877 None:intergenic
ACTGATGGTTGCTGCAAGTT+CGG 0.469127 tig0034173:+23260 Msa1452860:CDS
GCCAATAGTCCTTCCAGAAG+TGG 0.470965 tig0034173:-24795 None:intergenic
ACGACCATCGGCGAAGACTA+AGG 0.473052 tig0034173:+25029 Msa1452860:CDS
GTTCACTACACCTGCAGCTA+TGG 0.474623 tig0034173:+22050 Msa1452860:CDS
AAAGCTTCTGCAGAGAGAAC+TGG 0.475828 tig0034173:+21991 Msa1452860:CDS
TTATGGTGCTATGGCTGTTG+CGG 0.483548 tig0034173:+22452 Msa1452860:CDS
TCTCTAATGGCACGGGCATA+GGG 0.483690 tig0034173:-23088 None:intergenic
GAGAGAGTGAAGTTGAAGAA+GGG 0.488119 tig0034173:-21882 None:intergenic
TTTCCTGTTTGGGAAAAGAT+TGG 0.488590 tig0034173:+22126 Msa1452860:CDS
TTCAGGGATTTATGGTGCTA+TGG 0.492125 tig0034173:+22443 Msa1452860:intron
GCCTGAGCAAATGGAACAAA+TGG 0.495910 tig0034173:-23921 None:intergenic
GAACAACAAGAACAAAGATT+CGG 0.497320 tig0034173:-21737 None:intergenic
TAATTTACAGTTTATACTGA+TGG 0.502909 tig0034173:+23245 Msa1452860:intron
TACTGGAATTGACTCTCTTG+GGG 0.509127 tig0034173:+22494 Msa1452860:CDS
TTGCAGCATGGTATGAGAAA+AGG 0.509827 tig0034173:+24751 Msa1452860:intron
CATTAGATGCTATTGTTCAA+GGG 0.510033 tig0034173:+22529 Msa1452860:CDS
TTGGTGTTAGTGTTAGAGAA+AGG 0.510398 tig0034173:-21858 None:intergenic
ATTTCATCAAAGGAAGAAAA+GGG 0.510946 tig0034173:+21924 Msa1452860:CDS
CTTTCTCCGATTATCACACA+TGG 0.513149 tig0034173:+24962 Msa1452860:CDS
CCAATAGTCCTTCCAGAAGT+GGG 0.521288 tig0034173:-24794 None:intergenic
CTCTACATCTCTAATGGCAC+GGG 0.530651 tig0034173:-23095 None:intergenic
TGATGTTGTTGTTCATGTTG+AGG 0.533132 tig0034173:-21777 None:intergenic
TATGTGGCTGCCTCTCCTAA+AGG 0.540575 tig0034173:+23987 Msa1452860:CDS
GTTAGACTCAGCTATGGAAT+CGG 0.541683 tig0034173:+22156 Msa1452860:CDS
ACAGGTGCAACAATATAAGT+AGG 0.544789 tig0034173:-24119 None:intergenic
AGCTGCAGGTGTAGTGAACC+CGG 0.554325 tig0034173:-22046 None:intergenic
TCTGCCTTAGTCTTCGCCGA+TGG 0.560456 tig0034173:-25033 None:intergenic
AAAAGAAGAGCCATAATTGG+AGG 0.560506 tig0034173:-22567 None:intergenic
CATAATAGAGAGAACCAGTA+AGG 0.561668 tig0034173:-23968 None:intergenic
CCTCTACATCTCTAATGGCA+CGG 0.562261 tig0034173:-23096 None:intergenic
GTGGTGACTTCCATAGCTGC+AGG 0.567391 tig0034173:-22060 None:intergenic
GATGGTTGCTGCAAGTTCGG+TGG 0.571035 tig0034173:+23263 Msa1452860:CDS
CGTGGTTTCAATGATGCTGC+TGG 0.572740 tig0034173:+22093 Msa1452860:CDS
ATCTATTCCCCACTTCTGGA+AGG 0.575982 tig0034173:+24786 Msa1452860:CDS
ACTGGAATTGACTCTCTTGG+GGG 0.580200 tig0034173:+22495 Msa1452860:CDS
GGACTATTGGCTCTCTACCT+CGG 0.580542 tig0034173:+24807 Msa1452860:CDS
AGCTATGTGAATTTCATCAA+AGG 0.595654 tig0034173:+21914 Msa1452860:CDS
CCGTGCCATTAGAGATGTAG+AGG 0.596524 tig0034173:+23096 Msa1452860:CDS
GGGAGAGGAGCTCTTCTACA+GGG 0.602260 tig0034173:+23284 Msa1452860:CDS
ATGGTTGCTGCAAGTTCGGT+GGG 0.610676 tig0034173:+23264 Msa1452860:CDS
GCTGTTGTTAGACTCAGCTA+TGG 0.613019 tig0034173:+22150 Msa1452860:CDS
TTTCTCCGATTATCACACAT+GGG 0.632019 tig0034173:+24963 Msa1452860:CDS
TTTGGAAGATACACGACCAT+CGG 0.640254 tig0034173:+25017 Msa1452860:CDS
TCAACTGTTATATTGGGACA+TGG 0.640865 tig0034173:+24992 Msa1452860:CDS
CAGCAGCATCATTGAAACCA+CGG 0.669168 tig0034173:-22092 None:intergenic
CAATAGTCCTTCCAGAAGTG+GGG 0.670663 tig0034173:-24793 None:intergenic
ACAGAGGTGAGACAAGAACC+GGG 0.671283 tig0034173:+22028 Msa1452860:CDS
ATTGAAACCACGGTTGAATG+TGG 0.675695 tig0034173:-22082 None:intergenic
GTCACCACCACATTCAACCG+TGG 0.675824 tig0034173:+22075 Msa1452860:CDS
TGAGCAAATGGAACAAATGG+TGG 0.702641 tig0034173:-23918 None:intergenic
TTATCAAATTACCTGCAAAG+GGG 0.706347 tig0034173:-23152 None:intergenic
CTTGGATCCACTCAAAACCG+AGG 0.711747 tig0034173:-24824 None:intergenic
ATGGTGCTATGGCTGTTGCG+GGG 0.715398 tig0034173:+22454 Msa1452860:CDS
GGTGATACCATAGATGACAG+AGG 0.725756 tig0034173:+22012 Msa1452860:CDS
GAAACCACGGTTGAATGTGG+TGG 0.735030 tig0034173:-22079 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTCAAATTCAAAAT+GGG - tig0034173:21816-21835 None:intergenic 10.0%
!! AAAAAAATTCAAATTCAAAA+TGG - tig0034173:21817-21836 None:intergenic 10.0%
!! TAATATAAAACGTAATTAAA+GGG - tig0034173:23834-23853 None:intergenic 10.0%
!!! TTTTTCTTAATTGAATTGAA+TGG + tig0034173:21834-21853 Msa1452860:exon 15.0%
!!! GAAATTTTGATTTTGTTTAT+TGG + tig0034173:22356-22375 Msa1452860:intron 15.0%
!! CATATACTTTAGTATAAAAA+AGG - tig0034173:22610-22629 None:intergenic 15.0%
!! AATAAAACATAAAGTCAAAT+TGG - tig0034173:22843-22862 None:intergenic 15.0%
!!! GGAAATTTTTGTATTAAATA+GGG + tig0034173:22968-22987 Msa1452860:intron 15.0%
!! ATTAATTAAATCAATGTCAA+TGG - tig0034173:23223-23242 None:intergenic 15.0%
!!! AATTTAGTTTTGTGAAAAAA+AGG + tig0034173:23490-23509 Msa1452860:intron 15.0%
!! ATTTATAATTTGAATTCTAC+AGG + tig0034173:23565-23584 Msa1452860:intron 15.0%
!! TTTATAATTTGAATTCTACA+GGG + tig0034173:23566-23585 Msa1452860:intron 15.0%
!! GTAATATAAAACGTAATTAA+AGG - tig0034173:23835-23854 None:intergenic 15.0%
!! TTTCAAAAGATAAAGTAAAT+AGG - tig0034173:24854-24873 None:intergenic 15.0%
!!! TACTGTTTTGTAATAAAAAT+TGG + tig0034173:25273-25292 Msa1452860:three_prime_UTR 15.0%
!! TTCAGCAAAAATATACAAAA+GGG - tig0034173:22220-22239 None:intergenic 20.0%
!! TTTCAGCAAAAATATACAAA+AGG - tig0034173:22221-22240 None:intergenic 20.0%
!! AAAATGAATATTTGCTTTGT+TGG + tig0034173:22239-22258 Msa1452860:intron 20.0%
!!! ATGTTTTTCTTTTTCCAAAA+TGG + tig0034173:22333-22352 Msa1452860:intron 20.0%
!!! TGTTTTTCTTTTTCCAAAAT+GGG + tig0034173:22334-22353 Msa1452860:intron 20.0%
!!! AAAATCAAAATTTCCCATTT+TGG - tig0034173:22350-22369 None:intergenic 20.0%
!!! GAATTCAATTGTTATTTGTA+TGG + tig0034173:22390-22409 Msa1452860:intron 20.0%
!!! TTAATAAATTGCTTTGTTTC+AGG + tig0034173:22426-22445 Msa1452860:intron 20.0%
!!! TAATAAATTGCTTTGTTTCA+GGG + tig0034173:22427-22446 Msa1452860:intron 20.0%
!! TACTAAAGTATATGATGATA+AGG + tig0034173:22616-22635 Msa1452860:intron 20.0%
!!! GGGAAATTTTTGTATTAAAT+AGG + tig0034173:22967-22986 Msa1452860:intron 20.0%
!! TAATTTACAGTTTATACTGA+TGG + tig0034173:23245-23264 Msa1452860:intron 20.0%
!! ATATATATGTAATCTGATAC+AGG - tig0034173:23369-23388 None:intergenic 20.0%
!! TAAATTATTAAGCTCAAGTA+TGG - tig0034173:23550-23569 None:intergenic 20.0%
!! TTATAATTTGAATTCTACAG+GGG + tig0034173:23567-23586 Msa1452860:intron 20.0%
!!! AATCTAACTTGTGATTTATA+CGG + tig0034173:23873-23892 Msa1452860:intron 20.0%
!! TATAAGAAAAAGTTACCTTT+AGG - tig0034173:24005-24024 None:intergenic 20.0%
!! TAATGGGATATAATATTCAA+CGG - tig0034173:24211-24230 None:intergenic 20.0%
!! TCAATTAGAACAGATATAAT+GGG - tig0034173:24227-24246 None:intergenic 20.0%
!! ATCAATTAGAACAGATATAA+TGG - tig0034173:24228-24247 None:intergenic 20.0%
!!! GATGAATTTTATATACTTCA+AGG - tig0034173:24404-24423 None:intergenic 20.0%
!! ATAAAGTAAATAGGATTACT+TGG - tig0034173:24845-24864 None:intergenic 20.0%
!!! AGTTTTGTCTAAAATTTCTA+AGG + tig0034173:24883-24902 Msa1452860:intron 20.0%
!!! AACTAATTTGTGTTTATGTT+TGG + tig0034173:24911-24930 Msa1452860:intron 20.0%
!! ATTTACTCAACTGTTATATT+GGG + tig0034173:24986-25005 Msa1452860:CDS 20.0%
!!! TATTAATTTTACACAGCTTT+TGG - tig0034173:25305-25324 None:intergenic 20.0%
!! TTAAAGCAAAGATTGTAATT+GGG - tig0034173:25348-25367 None:intergenic 20.0%
!!! TTTAAAGCAAAGATTGTAAT+TGG - tig0034173:25349-25368 None:intergenic 20.0%
!! TTTTATTGATATCTACGAAG+TGG - tig0034173:21714-21733 None:intergenic 25.0%
! AATTTCATCAAAGGAAGAAA+AGG + tig0034173:21923-21942 Msa1452860:CDS 25.0%
! ATTTCATCAAAGGAAGAAAA+GGG + tig0034173:21924-21943 Msa1452860:CDS 25.0%
!!! GAACTTTTTGGAATCAATTT+TGG + tig0034173:22182-22201 Msa1452860:intron 25.0%
!!! TTTGTAGCTTTTTAGCTAAT+TGG + tig0034173:22281-22300 Msa1452860:intron 25.0%
!!! TTGTAGCTTTTTAGCTAATT+GGG + tig0034173:22282-22301 Msa1452860:intron 25.0%
!!! AGTTTTATATGTTCGATTAC+TGG + tig0034173:22477-22496 Msa1452860:CDS 25.0%
! ATAAAAAGAAGAGCCATAAT+TGG - tig0034173:22573-22592 None:intergenic 25.0%
! TCTCAACTTAACCAAAATAT+GGG - tig0034173:22686-22705 None:intergenic 25.0%
! ATCTCAACTTAACCAAAATA+TGG - tig0034173:22687-22706 None:intergenic 25.0%
! TCAAATAAGTCAATCAAAAC+AGG - tig0034173:22720-22739 None:intergenic 25.0%
! TAATTAAACGCTTATAGCAT+AGG - tig0034173:22897-22916 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+TGG + tig0034173:22914-22933 Msa1452860:intron 25.0%
! TTAGCATGCGATATATTTAT+TGG + tig0034173:22946-22965 Msa1452860:intron 25.0%
! TAGCATGCGATATATTTATT+GGG + tig0034173:22947-22966 Msa1452860:intron 25.0%
! TCATCAACATGGTTATTATT+AGG + tig0034173:23045-23064 Msa1452860:intron 25.0%
! TTTATCAAATTACCTGCAAA+GGG - tig0034173:23156-23175 None:intergenic 25.0%
!! TTTTATCAAATTACCTGCAA+AGG - tig0034173:23157-23176 None:intergenic 25.0%
! AAATATGAATCTTGATTGTG+TGG + tig0034173:23390-23409 Msa1452860:intron 25.0%
!!! TTAGTTTTGTGAAAAAAAGG+AGG + tig0034173:23493-23512 Msa1452860:intron 25.0%
!! TGCTAGCTTAATAATCTTAA+TGG + tig0034173:23520-23539 Msa1452860:intron 25.0%
! TATAATTTGAATTCTACAGG+GGG + tig0034173:23568-23587 Msa1452860:intron 25.0%
!! TTTTCTTTCTTGTGTTAGAA+GGG + tig0034173:23678-23697 Msa1452860:intron 25.0%
! TATAAAACGTAATTAAAGGG+AGG - tig0034173:23831-23850 None:intergenic 25.0%
! TGAGAAGAAAAAATGTAAAG+CGG - tig0034173:24030-24049 None:intergenic 25.0%
! ATATACTTTAGTAAAGTGAC+AGG + tig0034173:24480-24499 Msa1452860:intron 25.0%
! TACTTTAGGTACTAAATTGA+TGG + tig0034173:24568-24587 Msa1452860:intron 25.0%
!! TGTCTAAAATTTCTAAGGAA+TGG + tig0034173:24888-24907 Msa1452860:intron 25.0%
! GATTTACTCAACTGTTATAT+TGG + tig0034173:24985-25004 Msa1452860:CDS 25.0%
!!! CAAAGTTTTGATTACATTAC+AGG + tig0034173:25222-25241 Msa1452860:three_prime_UTR 25.0%
! TTAAGGTTTGAGGTTGAAAT+TGG - tig0034173:21647-21666 None:intergenic 30.0%
GAACAACAAGAACAAAGATT+CGG - tig0034173:21740-21759 None:intergenic 30.0%
AGCTATGTGAATTTCATCAA+AGG + tig0034173:21914-21933 Msa1452860:CDS 30.0%
CTAATTGGGTCAAACAAAAA+AGG + tig0034173:22296-22315 Msa1452860:intron 30.0%
GTTATTTGTATGGTGCAATT+TGG + tig0034173:22400-22419 Msa1452860:intron 30.0%
CAATAGCATCTAATGATAGA+TGG - tig0034173:22524-22543 None:intergenic 30.0%
TCATTAGATGCTATTGTTCA+AGG + tig0034173:22528-22547 Msa1452860:CDS 30.0%
CATTAGATGCTATTGTTCAA+GGG + tig0034173:22529-22548 Msa1452860:CDS 30.0%
! TTTCGTTCAATCCCATATTT+TGG + tig0034173:22672-22691 Msa1452860:intron 30.0%
ATATCGCATGCTAAAGATTA+AGG - tig0034173:22940-22959 None:intergenic 30.0%
TTGATGAAAGCTCAATTCAT+GGG - tig0034173:23032-23051 None:intergenic 30.0%
!!! GAACTATGGAGTTTTTTCTA+TGG + tig0034173:23124-23143 Msa1452860:CDS 30.0%
TTATCAAATTACCTGCAAAG+GGG - tig0034173:23155-23174 None:intergenic 30.0%
! TTGATAAAACTTGCTTGCTT+TGG + tig0034173:23168-23187 Msa1452860:intron 30.0%
TAAGAGATCTCTCACTTTAA+CGG + tig0034173:23327-23346 Msa1452860:intron 30.0%
TATATGTAATCTGATACAGG+TGG - tig0034173:23366-23385 None:intergenic 30.0%
AATCTTATACAAGATGTTCG+AGG + tig0034173:23620-23639 Msa1452860:intron 30.0%
CTTCTAACACAAGAAAGAAA+AGG - tig0034173:23679-23698 None:intergenic 30.0%
! CTTTTCTTTCTTGTGTTAGA+AGG + tig0034173:23677-23696 Msa1452860:intron 30.0%
CTAATGACTGTTATGTCAAA+AGG - tig0034173:23733-23752 None:intergenic 30.0%
!! TAACAGTCATTAGTTCTAGT+CGG + tig0034173:23740-23759 Msa1452860:intron 30.0%
GAGAAGAAAAAATGTAAAGC+GGG - tig0034173:24029-24048 None:intergenic 30.0%
GATTTGAAAAAGCTGTTTGA+AGG + tig0034173:24167-24186 Msa1452860:CDS 30.0%
TGGGTTAAAATCTTCATCAA+GGG + tig0034173:24263-24282 Msa1452860:intron 30.0%
! ATATACTTTAGGGACCAAAT+TGG - tig0034173:24365-24384 None:intergenic 30.0%
TCCCTACTATTAAGATGTTA+GGG + tig0034173:24431-24450 Msa1452860:intron 30.0%
TCCCTAACATCTTAATAGTA+GGG - tig0034173:24435-24454 None:intergenic 30.0%
GGGACAAATCAAATATATGA+CGG + tig0034173:24451-24470 Msa1452860:intron 30.0%
GGTTTATTCAATAGTTTCTC+AGG + tig0034173:24589-24608 Msa1452860:intron 30.0%
AAACCAAAAATAAGTGGATC+AGG - tig0034173:24733-24752 None:intergenic 30.0%
TAAATCCCATGTGTGATAAT+CGG - tig0034173:24971-24990 None:intergenic 30.0%
!! TTTCTTCTGATTTGAGTTGT+TGG - tig0034173:25063-25082 None:intergenic 30.0%
! AGAGCATTTCAAAATCTAGT+TGG - tig0034173:25092-25111 None:intergenic 30.0%
! ACGATGAAGTTTAAGGTTTG+AGG - tig0034173:21657-21676 None:intergenic 35.0%
ACATGACACGATGAAGTTTA+AGG - tig0034173:21664-21683 None:intergenic 35.0%
! TTGTTGTTCATGTTGAGGTT+TGG - tig0034173:21775-21794 None:intergenic 35.0%
! TGATGTTGTTGTTCATGTTG+AGG - tig0034173:21780-21799 None:intergenic 35.0%
!! TTGGTGTTAGTGTTAGAGAA+AGG - tig0034173:21861-21880 None:intergenic 35.0%
!! CTTCAAGAGTTGTTTCTGTT+CGG + tig0034173:21962-21981 Msa1452860:CDS 35.0%
TTTCCTGTTTGGGAAAAGAT+TGG + tig0034173:22126-22145 Msa1452860:CDS 35.0%
!! TGCTTTGTTTCAGGGATTTA+TGG + tig0034173:22435-22454 Msa1452860:intron 35.0%
! ATTACTGGAATTGACTCTCT+TGG + tig0034173:22492-22511 Msa1452860:CDS 35.0%
! TTACTGGAATTGACTCTCTT+GGG + tig0034173:22493-22512 Msa1452860:CDS 35.0%
ATATGCAGTTCCTCCAATTA+TGG + tig0034173:22557-22576 Msa1452860:CDS 35.0%
AAAAGAAGAGCCATAATTGG+AGG - tig0034173:22570-22589 None:intergenic 35.0%
!! GGTTAAGTTGAGATGCATTT+AGG + tig0034173:22693-22712 Msa1452860:intron 35.0%
CTTATTTCCGTAAGCTCTAT+TGG + tig0034173:22782-22801 Msa1452860:intron 35.0%
AACCTATCCAATAGAGCTTA+CGG - tig0034173:22792-22811 None:intergenic 35.0%
AAGCTCTATTGGATAGGTTA+TGG + tig0034173:22793-22812 Msa1452860:intron 35.0%
CTAAAGATTAAGGCCATGTT+TGG - tig0034173:22930-22949 None:intergenic 35.0%
! GTTGATGAAAGCTCAATTCA+TGG - tig0034173:23033-23052 None:intergenic 35.0%
GAATTGAGCTTTCATCAACA+TGG + tig0034173:23034-23053 Msa1452860:intron 35.0%
TTCATCCTCTACATCTCTAA+TGG - tig0034173:23104-23123 None:intergenic 35.0%
ATGTAGAGGATGAAGAACTA+TGG + tig0034173:23110-23129 Msa1452860:CDS 35.0%
TCAATGGTTGCACTAGATTA+AGG - tig0034173:23207-23226 None:intergenic 35.0%
AAGAGATCTCTCACTTTAAC+GGG + tig0034173:23328-23347 Msa1452860:intron 35.0%
!! ACACAGAAAGTACTCATGAT+TGG - tig0034173:23438-23457 None:intergenic 35.0%
!! CTGGCTGATATATTTTTACG+AGG + tig0034173:23593-23612 Msa1452860:intron 35.0%
TATACAAGATGTTCGAGGAA+TGG + tig0034173:23625-23644 Msa1452860:intron 35.0%
TTATACGGTAATATGCAGAC+AGG + tig0034173:23888-23907 Msa1452860:intron 35.0%
TATACGGTAATATGCAGACA+GGG + tig0034173:23889-23908 Msa1452860:intron 35.0%
CATAATAGAGAGAACCAGTA+AGG - tig0034173:23971-23990 None:intergenic 35.0%
!! TACTGGTTCTCTCTATTATG+TGG + tig0034173:23971-23990 Msa1452860:CDS 35.0%
! GAAAAAGTTACCTTTAGGAG+AGG - tig0034173:24000-24019 None:intergenic 35.0%
GATGGTAATCATTAATCAGC+TGG - tig0034173:24080-24099 None:intergenic 35.0%
TCTGAAAGAGAGAAAAGAGA+TGG - tig0034173:24098-24117 None:intergenic 35.0%
ACAGGTGCAACAATATAAGT+AGG - tig0034173:24122-24141 None:intergenic 35.0%
GGGATATAATATTCAACGGT+AGG - tig0034173:24207-24226 None:intergenic 35.0%
!! TTGATAACGTTCTAGTCAAG+TGG + tig0034173:24243-24262 Msa1452860:intron 35.0%
! TGATAACGTTCTAGTCAAGT+GGG + tig0034173:24244-24263 Msa1452860:intron 35.0%
! GTGGGTTAAAATCTTCATCA+AGG + tig0034173:24262-24281 Msa1452860:intron 35.0%
GTCCCTACTATTAAGATGTT+AGG + tig0034173:24430-24449 Msa1452860:intron 35.0%
GTCCCTAACATCTTAATAGT+AGG - tig0034173:24436-24455 None:intergenic 35.0%
TGAAGAGAGATCGATACTTT+AGG + tig0034173:24554-24573 Msa1452860:intron 35.0%
CATTCGAAAACGATGAAACA+TGG - tig0034173:24654-24673 None:intergenic 35.0%
! TTCATCGTTTTCGAATGTGA+CGG + tig0034173:24657-24676 Msa1452860:intron 35.0%
GTGACGGTTCAGAAATAAAA+AGG + tig0034173:24673-24692 Msa1452860:intron 35.0%
!! CAACCTGATCCACTTATTTT+TGG + tig0034173:24727-24746 Msa1452860:intron 35.0%
TGCTGCAAACCAAAAATAAG+TGG - tig0034173:24739-24758 None:intergenic 35.0%
!!! CTTATTTTTGGTTTGCAGCA+TGG + tig0034173:24739-24758 Msa1452860:intron 35.0%
AAAAATCTATTCCCCACTTC+TGG + tig0034173:24782-24801 Msa1452860:CDS 35.0%
TTTCTCCGATTATCACACAT+GGG + tig0034173:24963-24982 Msa1452860:CDS 35.0%
TCAACTGTTATATTGGGACA+TGG + tig0034173:24992-25011 Msa1452860:CDS 35.0%
TTATATTGGGACATGGTCTT+TGG + tig0034173:24999-25018 Msa1452860:CDS 35.0%
!! TGCTCTACAAAGACTGATTT+TGG + tig0034173:25106-25125 Msa1452860:three_prime_UTR 35.0%
!!! TGGTTTTGTGTGGTGAGTTT+TGG - tig0034173:21694-21713 None:intergenic 40.0%
!!! ATCTACGAAGTGGTTTTGTG+TGG - tig0034173:21704-21723 None:intergenic 40.0%
AGTGAAGTTGAAGAAGGGTT+TGG - tig0034173:21880-21899 None:intergenic 40.0%
GAGAGAGTGAAGTTGAAGAA+GGG - tig0034173:21885-21904 None:intergenic 40.0%
TGAGAGAGTGAAGTTGAAGA+AGG - tig0034173:21886-21905 None:intergenic 40.0%
ATTGAAACCACGGTTGAATG+TGG - tig0034173:22085-22104 None:intergenic 40.0%
GTTAGACTCAGCTATGGAAT+CGG + tig0034173:22156-22175 Msa1452860:CDS 40.0%
! TGGAATCGGTGAGAACTTTT+TGG + tig0034173:22170-22189 Msa1452860:intron 40.0%
! TTCAGGGATTTATGGTGCTA+TGG + tig0034173:22443-22462 Msa1452860:intron 40.0%
! TACTGGAATTGACTCTCTTG+GGG + tig0034173:22494-22513 Msa1452860:CDS 40.0%
TTCCGTAAGCTCTATTGGAT+AGG + tig0034173:22787-22806 Msa1452860:intron 40.0%
AGCTCAATTCATGGGAACAA+AGG - tig0034173:23024-23043 None:intergenic 40.0%
!! CAGAAAGTACTCATGATTGG+AGG - tig0034173:23435-23454 None:intergenic 40.0%
CTTACCCTCTTTAATGTCCT+TGG + tig0034173:23805-23824 Msa1452860:intron 40.0%
ATACGGTAATATGCAGACAG+GGG + tig0034173:23890-23909 Msa1452860:intron 40.0%
TGAGCAAATGGAACAAATGG+TGG - tig0034173:23921-23940 None:intergenic 40.0%
ACCATTTGTTCCATTTGCTC+AGG + tig0034173:23920-23939 Msa1452860:CDS 40.0%
AATCAGCTGGAGAACAAACT+AGG - tig0034173:24067-24086 None:intergenic 40.0%
CTAGCACGAGATTGTAAAAC+AGG - tig0034173:24140-24159 None:intergenic 40.0%
TTGGAGAGAGTGATACTGTA+TGG - tig0034173:24346-24365 None:intergenic 40.0%
CAGTATCACTCTCTCCAATT+TGG + tig0034173:24348-24367 Msa1452860:intron 40.0%
ATCACAAGCAGAAAATGCAC+AGG - tig0034173:24703-24722 None:intergenic 40.0%
TTGCAGCATGGTATGAGAAA+AGG + tig0034173:24751-24770 Msa1452860:intron 40.0%
CTTTCTCCGATTATCACACA+TGG + tig0034173:24962-24981 Msa1452860:CDS 40.0%
TTTGGAAGATACACGACCAT+CGG + tig0034173:25017-25036 Msa1452860:CDS 40.0%
AAAGCTTCTGCAGAGAGAAC+TGG + tig0034173:21991-22010 Msa1452860:CDS 45.0%
GGTGATACCATAGATGACAG+AGG + tig0034173:22012-22031 Msa1452860:CDS 45.0%
TGTCTCACCTCTGTCATCTA+TGG - tig0034173:22022-22041 None:intergenic 45.0%
CAGCAGCATCATTGAAACCA+CGG - tig0034173:22095-22114 None:intergenic 45.0%
!! TGCTGCTGACTTTCCTGTTT+GGG + tig0034173:22116-22135 Msa1452860:CDS 45.0%
! GCACCAATCTTTTCCCAAAC+AGG - tig0034173:22132-22151 None:intergenic 45.0%
GCTGTTGTTAGACTCAGCTA+TGG + tig0034173:22150-22169 Msa1452860:CDS 45.0%
!! TTATGGTGCTATGGCTGTTG+CGG + tig0034173:22452-22471 Msa1452860:CDS 45.0%
! ACTGGAATTGACTCTCTTGG+GGG + tig0034173:22495-22514 Msa1452860:CDS 45.0%
GATGCTATTGTTCAAGGGCT+TGG + tig0034173:22534-22553 Msa1452860:CDS 45.0%
CTCTACATCTCTAATGGCAC+GGG - tig0034173:23098-23117 None:intergenic 45.0%
CCTCTACATCTCTAATGGCA+CGG - tig0034173:23099-23118 None:intergenic 45.0%
ACTGATGGTTGCTGCAAGTT+CGG + tig0034173:23260-23279 Msa1452860:CDS 45.0%
! TGAGCCTTGGTGCAATAGTA+AGG + tig0034173:23701-23720 Msa1452860:intron 45.0%
GCAACCTTACTATTGCACCA+AGG - tig0034173:23708-23727 None:intergenic 45.0%
AAACAACCCTCTCGACTTTC+AGG + tig0034173:23765-23784 Msa1452860:intron 45.0%
AACAACCCTCTCGACTTTCA+GGG + tig0034173:23766-23785 Msa1452860:intron 45.0%
GAGGCCAAGGACATTAAAGA+GGG - tig0034173:23812-23831 None:intergenic 45.0%
ACGTAATTAAAGGGAGGCCA+AGG - tig0034173:23825-23844 None:intergenic 45.0%
GCCTGAGCAAATGGAACAAA+TGG - tig0034173:23924-23943 None:intergenic 45.0%
GTACTTACAGCTGTCCTTAC+TGG + tig0034173:23954-23973 Msa1452860:CDS 45.0%
ATCTATTCCCCACTTCTGGA+AGG + tig0034173:24786-24805 Msa1452860:CDS 45.0%
CAATAGTCCTTCCAGAAGTG+GGG - tig0034173:24796-24815 None:intergenic 45.0%
CCAATAGTCCTTCCAGAAGT+GGG - tig0034173:24797-24816 None:intergenic 45.0%
!! TATTATATTTATATACTTTA+GGG - tig0034173:24375-24394 None:intergenic 5.0%
!! TTATTATATTTATATACTTT+AGG - tig0034173:24376-24395 None:intergenic 5.0%
GACAGAGGTGAGACAAGAAC+CGG + tig0034173:22027-22046 Msa1452860:CDS 50.0%
ACAGAGGTGAGACAAGAACC+GGG + tig0034173:22028-22047 Msa1452860:CDS 50.0%
GTTCACTACACCTGCAGCTA+TGG + tig0034173:22050-22069 Msa1452860:CDS 50.0%
GAAACCACGGTTGAATGTGG+TGG - tig0034173:22082-22101 None:intergenic 50.0%
CGTGGTTTCAATGATGCTGC+TGG + tig0034173:22093-22112 Msa1452860:CDS 50.0%
!! GTGCTGCTGACTTTCCTGTT+TGG + tig0034173:22115-22134 Msa1452860:CDS 50.0%
!! TATGGTGCTATGGCTGTTGC+GGG + tig0034173:22453-22472 Msa1452860:CDS 50.0%
TCTCTAATGGCACGGGCATA+GGG - tig0034173:23091-23110 None:intergenic 50.0%
ATCTCTAATGGCACGGGCAT+AGG - tig0034173:23092-23111 None:intergenic 50.0%
! CCGTGCCATTAGAGATGTAG+AGG + tig0034173:23096-23115 Msa1452860:CDS 50.0%
ATGGTTGCTGCAAGTTCGGT+GGG + tig0034173:23264-23283 Msa1452860:CDS 50.0%
! TTGAATTCTACAGGGGGCAC+TGG + tig0034173:23574-23593 Msa1452860:intron 50.0%
TGTTCGAGGAATGGCGTCTT+TGG + tig0034173:23634-23653 Msa1452860:intron 50.0%
TGTGTTAGAAGGGTGAGCCT+TGG + tig0034173:23688-23707 Msa1452860:intron 50.0%
CTTAGCCCTGAAAGTCGAGA+GGG - tig0034173:23774-23793 None:intergenic 50.0%
GGAGGCCAAGGACATTAAAG+AGG - tig0034173:23813-23832 None:intergenic 50.0%
TATGTGGCTGCCTCTCCTAA+AGG + tig0034173:23987-24006 Msa1452860:CDS 50.0%
! CCCACTTCTGGAAGGACTAT+TGG + tig0034173:24794-24813 Msa1452860:CDS 50.0%
GCCAATAGTCCTTCCAGAAG+TGG - tig0034173:24798-24817 None:intergenic 50.0%
!! GGACTATTGGCTCTCTACCT+CGG + tig0034173:24807-24826 Msa1452860:CDS 50.0%
!!! CTCTCTACCTCGGTTTTGAG+TGG + tig0034173:24817-24836 Msa1452860:CDS 50.0%
CTTGGATCCACTCAAAACCG+AGG - tig0034173:24827-24846 None:intergenic 50.0%
AGCTGCAGGTGTAGTGAACC+CGG - tig0034173:22049-22068 None:intergenic 55.0%
GTGGTGACTTCCATAGCTGC+AGG - tig0034173:22063-22082 None:intergenic 55.0%
GTCACCACCACATTCAACCG+TGG + tig0034173:22075-22094 Msa1452860:CDS 55.0%
!! ATGGTGCTATGGCTGTTGCG+GGG + tig0034173:22454-22473 Msa1452860:CDS 55.0%
CTATGGCATGTCCCCTTTGC+AGG + tig0034173:23141-23160 Msa1452860:CDS 55.0%
GATGGTTGCTGCAAGTTCGG+TGG + tig0034173:23263-23282 Msa1452860:CDS 55.0%
TGGGAGAGGAGCTCTTCTAC+AGG + tig0034173:23283-23302 Msa1452860:CDS 55.0%
GGGAGAGGAGCTCTTCTACA+GGG + tig0034173:23284-23303 Msa1452860:CDS 55.0%
CTTCTACAGGGCTGCAGTTC+AGG + tig0034173:23296-23315 Msa1452860:CDS 55.0%
CCTTAGCCCTGAAAGTCGAG+AGG - tig0034173:23775-23794 None:intergenic 55.0%
CCTCTCGACTTTCAGGGCTA+AGG + tig0034173:23772-23791 Msa1452860:intron 55.0%
GCTGCAAGTGCCTGAGCAAA+TGG - tig0034173:23933-23952 None:intergenic 55.0%
ACGACCATCGGCGAAGACTA+AGG + tig0034173:25029-25048 Msa1452860:CDS 55.0%
! TCTGCCTTAGTCTTCGCCGA+TGG - tig0034173:25036-25055 None:intergenic 55.0%
! TGCTGCAAGTTCGGTGGGAG+AGG + tig0034173:23269-23288 Msa1452860:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0034173 gene 21635 25386 21635 ID=Msa1452860;Name=Msa1452860
tig0034173 mRNA 21635 25386 21635 ID=Msa1452860-mRNA-1;Parent=Msa1452860;Name=Msa1452860-mRNA-1;_AED=0.12;_eAED=0.12;_QI=218|0.85|1|1|0.71|0.75|8|290|348
tig0034173 exon 21635 22177 21635 ID=Msa1452860-mRNA-1:exon:18830;Parent=Msa1452860-mRNA-1
tig0034173 exon 22448 22599 22448 ID=Msa1452860-mRNA-1:exon:18831;Parent=Msa1452860-mRNA-1
tig0034173 exon 23067 23162 23067 ID=Msa1452860-mRNA-1:exon:18832;Parent=Msa1452860-mRNA-1
tig0034173 exon 23255 23317 23255 ID=Msa1452860-mRNA-1:exon:18833;Parent=Msa1452860-mRNA-1
tig0034173 exon 23906 24008 23906 ID=Msa1452860-mRNA-1:exon:18834;Parent=Msa1452860-mRNA-1
tig0034173 exon 24117 24188 24117 ID=Msa1452860-mRNA-1:exon:18835;Parent=Msa1452860-mRNA-1
tig0034173 exon 24757 24845 24757 ID=Msa1452860-mRNA-1:exon:18836;Parent=Msa1452860-mRNA-1
tig0034173 exon 24950 25386 24950 ID=Msa1452860-mRNA-1:exon:18837;Parent=Msa1452860-mRNA-1
tig0034173 five_prime_UTR 21635 21852 21635 ID=Msa1452860-mRNA-1:five_prime_utr;Parent=Msa1452860-mRNA-1
tig0034173 CDS 21853 22177 21853 ID=Msa1452860-mRNA-1:cds;Parent=Msa1452860-mRNA-1
tig0034173 CDS 22448 22599 22448 ID=Msa1452860-mRNA-1:cds;Parent=Msa1452860-mRNA-1
tig0034173 CDS 23067 23162 23067 ID=Msa1452860-mRNA-1:cds;Parent=Msa1452860-mRNA-1
tig0034173 CDS 23255 23317 23255 ID=Msa1452860-mRNA-1:cds;Parent=Msa1452860-mRNA-1
tig0034173 CDS 23906 24008 23906 ID=Msa1452860-mRNA-1:cds;Parent=Msa1452860-mRNA-1
tig0034173 CDS 24117 24188 24117 ID=Msa1452860-mRNA-1:cds;Parent=Msa1452860-mRNA-1
tig0034173 CDS 24757 24845 24757 ID=Msa1452860-mRNA-1:cds;Parent=Msa1452860-mRNA-1
tig0034173 CDS 24950 25096 24950 ID=Msa1452860-mRNA-1:cds;Parent=Msa1452860-mRNA-1
tig0034173 three_prime_UTR 25097 25386 25097 ID=Msa1452860-mRNA-1:three_prime_utr;Parent=Msa1452860-mRNA-1
Gene Sequence

>Msa1452860

ATGGACCTTTCTCTAACACTAACACCAAACCCTTCTTCAACTTCACTCTCTCATTTCTCAAAGCTATGTGAATTTCATCAAAGGAAGAAAAGGGTTTCTTTCTTTGATGCTTCAAGAGTTGTTTCTGTTCGGTGTGTTAAAGCTTCTGCAGAGAGAACTGGTGATACCATAGATGACAGAGGTGAGACAAGAACCGGGTTCACTACACCTGCAGCTATGGAAGTCACCACCACATTCAACCGTGGTTTCAATGATGCTGCTGGTGCTGCTGACTTTCCTGTTTGGGAAAAGATTGGTGCTGTTGTTAGACTCAGCTATGGAATCGGGATTTATGGTGCTATGGCTGTTGCGGGGAGTTTTATATGTTCGATTACTGGAATTGACTCTCTTGGGGGTTTCCATCTATCATTAGATGCTATTGTTCAAGGGCTTGGATATGCAGTTCCTCCAATTATGGCTCTTCTTTTTATACTTGATGATGAAGTTGTGAAGTTATCACCCTATGCCCGTGCCATTAGAGATGTAGAGGATGAAGAACTATGGAGTTTTTTCTATGGCATGTCCCCTTTGCAGTTTATACTGATGGTTGCTGCAAGTTCGGTGGGAGAGGAGCTCTTCTACAGGGCTGCAGTTCAGACAGGGGTACTACCACCATTTGTTCCATTTGCTCAGGCACTTGCAGCTGTACTTACAGCTGTCCTTACTGGTTCTCTCTATTATGTGGCTGCCTCTCCTAAAGATCCTACTTATATTGTTGCACCTGTTTTACAATCTCGTGCTAGTCGTCAAGATTTGAAAAAGCTGTTTGAAGCATGGTATGAGAAAAGGCAAATGAAAAAAATCTATTCCCCACTTCTGGAAGGACTATTGGCTCTCTACCTCGGTTTTGAGTGGATCCAAACAAATAATATTCTTTCTCCGATTATCACACATGGGATTTACTCAACTGTTATATTGGGACATGGTCTTTGGAAGATACACGACCATCGGCGAAGACTAAGGCAGAGAATCCAACAACTCAAATCAGAAGAAAAAAATTCCAACTAG

Protein sequence

>Msa1452860

MDLSLTLTPNPSSTSLSHFSKLCEFHQRKKRVSFFDASRVVSVRCVKASAERTGDTIDDRGETRTGFTTPAAMEVTTTFNRGFNDAAGAADFPVWEKIGAVVRLSYGIGIYGAMAVAGSFICSITGIDSLGGFHLSLDAIVQGLGYAVPPIMALLFILDDEVVKLSPYARAIRDVEDEELWSFFYGMSPLQFILMVAASSVGEELFYRAAVQTGVLPPFVPFAQALAAVLTAVLTGSLYYVAASPKDPTYIVAPVLQSRASRQDLKKLFEAWYEKRQMKKIYSPLLEGLLALYLGFEWIQTNNILSPIITHGIYSTVILGHGLWKIHDHRRRLRQRIQQLKSEEKNSN*