AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0993280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993280 MtrunA17_Chr6g0476641 96.914 162 5 0 1 162 1 162 7.05e-113 322
Msa0993280 MtrunA17_Chr4g0051941 43.421 152 64 6 9 158 2 133 6.64e-26 99.4
Msa0993280 MtrunA17_Chr2g0318521 48.361 122 53 3 42 158 14 130 2.39e-24 95.1
Msa0993280 MtrunA17_Chr6g0453151 55.682 88 35 2 71 158 116 199 2.62e-24 96.3
Msa0993280 MtrunA17_Chr6g0453181 54.444 90 37 2 69 158 47 132 3.13e-24 94.7
Msa0993280 MtrunA17_Chr6g0453141 55.682 88 35 2 71 158 49 132 5.30e-24 94.4
Msa0993280 MtrunA17_Chr5g0447531 55.682 88 35 2 71 158 49 132 1.89e-23 92.8
Msa0993280 MtrunA17_Chr6g0453161 40.789 152 69 5 7 158 269 399 3.08e-23 95.1
Msa0993280 MtrunA17_Chr6g0453161 54.545 88 36 2 71 158 51 134 2.55e-22 92.4
Msa0993280 MtrunA17_Chr1g0157481 44.944 89 47 1 71 159 107 193 2.08e-18 80.5
Msa0993280 MtrunA17_Chr8g0345631 48.649 74 33 1 74 147 61 129 4.38e-16 73.2
Msa0993280 MtrunA17_Chr2g0301081 47.297 74 34 1 74 147 60 128 5.82e-16 72.8
Msa0993280 MtrunA17_Chr3g0092091 45.070 71 37 1 91 161 63 131 3.35e-15 70.5
Msa0993280 MtrunA17_Chr3g0133901 42.647 68 37 1 91 158 68 133 4.05e-14 67.8
Msa0993280 MtrunA17_Chr6g0462031 49.057 53 27 0 91 143 56 108 1.20e-13 66.2
Msa0993280 MtrunA17_Chr2g0279001 41.176 68 37 1 91 155 73 140 2.08e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993280 AT4G10340.1 74.510 153 37 2 11 162 2 153 1.46e-71 217
Msa0993280 AT1G29930.1 43.226 155 66 5 4 158 1 133 1.05e-23 94.0
Msa0993280 AT5G54270.1 45.113 133 60 4 31 158 7 131 1.43e-23 93.6
Msa0993280 AT1G29920.1 49.020 102 48 2 57 158 36 133 1.78e-23 93.2
Msa0993280 AT1G29910.1 49.020 102 48 2 57 158 36 133 1.78e-23 93.2
Msa0993280 AT2G34420.1 49.020 102 48 2 57 158 34 131 4.10e-23 92.4
Msa0993280 AT2G05100.1 58.427 89 31 3 71 158 49 132 6.18e-23 92.0
Msa0993280 AT2G05070.1 58.427 89 31 3 71 158 49 132 6.59e-23 91.7
Msa0993280 AT3G27690.1 58.427 89 31 3 71 158 50 133 9.08e-23 91.3
Msa0993280 AT3G27690.2 58.427 89 31 3 71 158 82 165 9.33e-23 92.0
Msa0993280 AT2G34430.1 48.515 101 48 2 58 158 36 132 1.28e-22 90.9
Msa0993280 AT2G05100.2 58.427 89 31 3 71 158 49 132 2.48e-22 91.3
Msa0993280 AT1G76570.1 40.741 135 72 4 28 159 62 191 4.68e-21 87.8
Msa0993280 AT3G61470.1 48.649 74 33 1 74 147 50 118 1.80e-16 74.3
Msa0993280 AT3G47470.1 46.479 71 36 1 91 161 64 132 6.61e-16 72.8
Msa0993280 AT1G19150.1 44.595 74 36 1 74 147 63 131 1.72e-15 72.0
Msa0993280 AT3G54890.3 50.943 53 26 0 91 143 55 107 1.27e-14 67.8
Msa0993280 AT3G54890.2 50.943 53 26 0 91 143 55 107 4.45e-14 67.4
Msa0993280 AT3G54890.4 50.943 53 26 0 91 143 55 107 7.52e-14 66.6
Msa0993280 AT3G54890.1 50.943 53 26 0 91 143 55 107 1.00e-13 67.0
Msa0993280 AT1G45474.2 42.647 68 37 1 91 158 56 121 3.87e-12 62.8
Msa0993280 AT1G45474.1 42.647 68 37 1 91 158 56 121 3.87e-12 62.8
Msa0993280 AT1G15820.1 41.176 68 37 1 91 155 70 137 2.59e-11 60.5

Find 49 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGTGCTGCTTTCTTCTTT+TGG 0.282302 6_4:+65784719 None:intergenic
GTTGCACCACTGAATTTAAC+TGG 0.292364 6_4:+65784796 None:intergenic
CCTGAGGCCTTCAACAAATA+TGG 0.304749 6_4:-65783116 Msa0993280:CDS
ACATACTTGGCGAAGTCTTC+GGG 0.334071 6_4:+65783742 None:intergenic
ACCTTGAACCAAACTGCTTC+AGG 0.342619 6_4:+65783080 None:intergenic
GACATACTTGGCGAAGTCTT+CGG 0.362129 6_4:+65783741 None:intergenic
AGCTATGGTTACGATCCTTT+TGG 0.377709 6_4:-65783778 Msa0993280:CDS
GGAGTAGCCACTTTCTGCTT+TGG 0.379363 6_4:+65784694 None:intergenic
CTTCTTGCCAGACGGTCTCT+TGG 0.386703 6_4:-65783961 Msa0993280:CDS
TGGGCAATGCTTGGTGCTGC+TGG 0.392704 6_4:-65783149 Msa0993280:CDS
GGCTTCTTGCTTAGACCAAA+AGG 0.435777 6_4:+65783763 None:intergenic
TCTACTGCAGCTGCTTCACT+TGG 0.436532 6_4:-65784841 Msa0993280:CDS
CTTGGAATGTCTGAAATGCT+TGG 0.439282 6_4:-65784823 Msa0993280:CDS
GCCACTTTCTGCTTTGGTGG+AGG 0.447166 6_4:+65784700 None:intergenic
TCCTGAAGCAGTTTGGTTCA+AGG 0.447410 6_4:-65783081 Msa0993280:CDS
ACTGTGGTCCTGAAGCAGTT+TGG 0.450252 6_4:-65783088 Msa0993280:CDS
GTTGGCTCCATATTTGTTGA+AGG 0.451119 6_4:+65783109 None:intergenic
CCATATTTGTTGAAGGCCTC+AGG 0.453560 6_4:+65783116 None:intergenic
TTGGCGAGCTCCTCGCTGGC+CGG 0.480287 6_4:+65784673 None:intergenic
GTAGCCACTTTCTGCTTTGG+TGG 0.482184 6_4:+65784697 None:intergenic
ATGGACTAATGCAGATATCA+AGG 0.508883 6_4:-65783194 Msa0993280:intron
GACTTCTCCAGTCAAGTACT+CGG 0.509895 6_4:+65783923 None:intergenic
GTAGAAATCACATACTCTCC+AGG 0.510743 6_4:+65783900 None:intergenic
AGCTGCAGTAGAAGCAGCAA+TGG 0.510980 6_4:+65784852 None:intergenic
GATCTGTCCAAGAGACCGTC+TGG 0.514379 6_4:+65783954 None:intergenic
ATGAGTTGATTCATGCAAGA+TGG 0.516137 6_4:-65783169 Msa0993280:CDS
GGCAAGAAGATCCTTCTGTC+CGG 0.520057 6_4:+65783975 None:intergenic
TGGTGGCAGGTCCGGACAGA+AGG 0.520994 6_4:-65783986 Msa0993280:intron
GTAGATGGAGTTGAAGAAGA+AGG 0.525039 6_4:+65784763 None:intergenic
GAGGAGCTCGCCAAGTGGTA+TGG 0.528132 6_4:-65784664 Msa0993280:intron
GAGATCCCCGAGTACTTGAC+TGG 0.539762 6_4:-65783930 Msa0993280:CDS
TGAGTTGATTCATGCAAGAT+GGG 0.541846 6_4:-65783168 Msa0993280:CDS
ACCTCCACCAAAGCAGAAAG+TGG 0.545715 6_4:-65784701 Msa0993280:CDS
TACTTGACTGGAGAAGTCCC+TGG 0.555966 6_4:-65783918 Msa0993280:CDS
AACTGCTTCAGGACCACAGT+TGG 0.560727 6_4:+65783091 None:intergenic
ACTTCTCCAGTCAAGTACTC+GGG 0.566093 6_4:+65783924 None:intergenic
CATGCAAGATGGGCAATGCT+TGG 0.567661 6_4:-65783158 Msa0993280:CDS
AAAGCAGAAAGTGGCTACTC+CGG 0.571671 6_4:-65784692 Msa0993280:CDS
GGAAATCCAGTTAAATTCAG+TGG 0.588045 6_4:-65784802 Msa0993280:CDS
TTAAATTCAGTGGTGCAACT+AGG 0.588240 6_4:-65784792 Msa0993280:CDS
TGCTGGATTCATCATTCCTG+AGG 0.589247 6_4:-65783132 Msa0993280:CDS
AGAAGCAGCAATGGAAGCCA+TGG 0.592749 6_4:+65784861 None:intergenic
TGGTGACTTACCATACCACT+TGG 0.598115 6_4:+65784654 None:intergenic
AACAAATATGGAGCCAACTG+TGG 0.610263 6_4:-65783104 Msa0993280:CDS
TAGAAATCACATACTCTCCA+GGG 0.613959 6_4:+65783901 None:intergenic
AGAAGGATCTTCTTGCCAGA+CGG 0.619123 6_4:-65783969 Msa0993280:CDS
CTTCTCCAGTCAAGTACTCG+GGG 0.643314 6_4:+65783925 None:intergenic
AGTGGCTACTCCGGCCAGCG+AGG 0.651750 6_4:-65784683 Msa0993280:CDS
CCAGCGAGGAGCTCGCCAAG+TGG 0.686789 6_4:-65784669 Msa0993280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGTAATTTTTTGAAAA+TGG - chr6_4:65783543-65783562 Msa0993280:intron 10.0%
!!! ATATTGTAATTTTTTGAAAA+TGG - chr6_4:65783543-65783562 Msa0993280:intron 10.0%
!!! CAACTTTTTTATTGAAATTT+TGG - chr6_4:65784088-65784107 Msa0993280:intron 15.0%
!!! TTTATGAAATTTTAACAACT+AGG - chr6_4:65784539-65784558 Msa0993280:intron 15.0%
!!! CAACTTTTTTATTGAAATTT+TGG - chr6_4:65784088-65784107 Msa0993280:intron 15.0%
!!! TTTATGAAATTTTAACAACT+AGG - chr6_4:65784539-65784558 Msa0993280:intron 15.0%
!! CATTGTATAAAATTCTCTTA+AGG - chr6_4:65783331-65783350 Msa0993280:intron 20.0%
!! TAAAATTCTCTTAAGGTATA+AGG - chr6_4:65783338-65783357 Msa0993280:intron 20.0%
!!! TTTTGGTTCTTTTGATAATT+TGG - chr6_4:65783920-65783939 Msa0993280:CDS 20.0%
!! CATTGTATAAAATTCTCTTA+AGG - chr6_4:65783331-65783350 Msa0993280:intron 20.0%
!! TAAAATTCTCTTAAGGTATA+AGG - chr6_4:65783338-65783357 Msa0993280:intron 20.0%
!!! TTTTGGTTCTTTTGATAATT+TGG - chr6_4:65783920-65783939 Msa0993280:CDS 20.0%
!! TAAGACAAGATTTTAAATCG+TGG - chr6_4:65783471-65783490 Msa0993280:intron 25.0%
!! ATTGACTATAATTTGAAGCT+AGG + chr6_4:65783796-65783815 None:intergenic 25.0%
!! ACTATAGTTGCTAAAACTTT+TGG - chr6_4:65783903-65783922 Msa0993280:intron 25.0%
! TTGTAAGATTTAGACATACT+TGG + chr6_4:65784200-65784219 None:intergenic 25.0%
! ATCGTTAATCAACGAAAATA+AGG + chr6_4:65784290-65784309 None:intergenic 25.0%
!!! TTTTCGTTGATTAACGATTT+TGG - chr6_4:65784292-65784311 Msa0993280:intron 25.0%
! AAAATAAACCTAAAATGCAG+TGG + chr6_4:65784381-65784400 None:intergenic 25.0%
!!! CATTGTGACTTTTTTTTTGA+GGG + chr6_4:65784431-65784450 None:intergenic 25.0%
!!! TCATTGTGACTTTTTTTTTG+AGG + chr6_4:65784432-65784451 None:intergenic 25.0%
! AAAATAAGTCTCAAATTCAG+TGG - chr6_4:65784507-65784526 Msa0993280:intron 25.0%
!! TTTTCTGATTTAGAAACTGA+AGG - chr6_4:65784570-65784589 Msa0993280:intron 25.0%
! AATCGTGAATCAACAAAAAT+AGG - chr6_4:65784598-65784617 Msa0993280:intron 25.0%
!! TAAGACAAGATTTTAAATCG+TGG - chr6_4:65783471-65783490 Msa0993280:intron 25.0%
!! ATTGACTATAATTTGAAGCT+AGG + chr6_4:65783796-65783815 None:intergenic 25.0%
!! ACTATAGTTGCTAAAACTTT+TGG - chr6_4:65783903-65783922 Msa0993280:intron 25.0%
! TTGTAAGATTTAGACATACT+TGG + chr6_4:65784200-65784219 None:intergenic 25.0%
! ATCGTTAATCAACGAAAATA+AGG + chr6_4:65784290-65784309 None:intergenic 25.0%
!!! TTTTCGTTGATTAACGATTT+TGG - chr6_4:65784292-65784311 Msa0993280:intron 25.0%
! AAAATAAACCTAAAATGCAG+TGG + chr6_4:65784381-65784400 None:intergenic 25.0%
!!! CATTGTGACTTTTTTTTTGA+GGG + chr6_4:65784431-65784450 None:intergenic 25.0%
!!! TCATTGTGACTTTTTTTTTG+AGG + chr6_4:65784432-65784451 None:intergenic 25.0%
! AAAATAAGTCTCAAATTCAG+TGG - chr6_4:65784507-65784526 Msa0993280:intron 25.0%
!! TTTTCTGATTTAGAAACTGA+AGG - chr6_4:65784570-65784589 Msa0993280:intron 25.0%
! AATCGTGAATCAACAAAAAT+AGG - chr6_4:65784598-65784617 Msa0993280:intron 25.0%
ACATGAGAACAAAACATTGT+TGG + chr6_4:65783295-65783314 None:intergenic 30.0%
!! ATTTTGGCAAAAGCTATAGT+AGG - chr6_4:65783656-65783675 Msa0993280:intron 30.0%
AAAAACACTCAATGCATGTT+TGG + chr6_4:65783845-65783864 None:intergenic 30.0%
!! TGGTTCTTTTGATAATTTGG+TGG - chr6_4:65783923-65783942 Msa0993280:CDS 30.0%
AGAGTATGTGATTTCTACTT+TGG - chr6_4:65784031-65784050 Msa0993280:intron 30.0%
ATTGAGAACATGAGTTAAAG+GGG + chr6_4:65784059-65784078 None:intergenic 30.0%
GATTGAGAACATGAGTTAAA+GGG + chr6_4:65784060-65784079 None:intergenic 30.0%
TGATTGAGAACATGAGTTAA+AGG + chr6_4:65784061-65784080 None:intergenic 30.0%
! ACAATGACAATGCATGTTTT+TGG - chr6_4:65784445-65784464 Msa0993280:intron 30.0%
CTTATGTTACGTTAATTGTG+TGG - chr6_4:65784688-65784707 Msa0993280:CDS 30.0%
ACATGAGAACAAAACATTGT+TGG + chr6_4:65783295-65783314 None:intergenic 30.0%
!! ATTTTGGCAAAAGCTATAGT+AGG - chr6_4:65783656-65783675 Msa0993280:intron 30.0%
AAAAACACTCAATGCATGTT+TGG + chr6_4:65783845-65783864 None:intergenic 30.0%
!! TGGTTCTTTTGATAATTTGG+TGG - chr6_4:65783923-65783942 Msa0993280:CDS 30.0%
AGAGTATGTGATTTCTACTT+TGG - chr6_4:65784031-65784050 Msa0993280:intron 30.0%
ATTGAGAACATGAGTTAAAG+GGG + chr6_4:65784059-65784078 None:intergenic 30.0%
GATTGAGAACATGAGTTAAA+GGG + chr6_4:65784060-65784079 None:intergenic 30.0%
TGATTGAGAACATGAGTTAA+AGG + chr6_4:65784061-65784080 None:intergenic 30.0%
! ACAATGACAATGCATGTTTT+TGG - chr6_4:65784445-65784464 Msa0993280:intron 30.0%
CTTATGTTACGTTAATTGTG+TGG - chr6_4:65784688-65784707 Msa0993280:CDS 30.0%
GGAAATCCAGTTAAATTCAG+TGG - chr6_4:65783124-65783143 Msa0993280:CDS 35.0%
TTAAATTCAGTGGTGCAACT+AGG - chr6_4:65783134-65783153 Msa0993280:CDS 35.0%
!! GAAAAGAGCAACAGTTTTGA+AGG + chr6_4:65783188-65783207 None:intergenic 35.0%
AGTGCATGTTTGAATTATCG+CGG - chr6_4:65783598-65783617 Msa0993280:intron 35.0%
AGTTGCGTTAAAATCACGTT+TGG - chr6_4:65783752-65783771 Msa0993280:CDS 35.0%
!! TCTTTTGATAATTTGGTGGC+AGG - chr6_4:65783927-65783946 Msa0993280:CDS 35.0%
TAGAAATCACATACTCTCCA+GGG + chr6_4:65784028-65784047 None:intergenic 35.0%
AAACCTAAAATGCAGTGGTA+GGG + chr6_4:65784376-65784395 None:intergenic 35.0%
TAAACCTAAAATGCAGTGGT+AGG + chr6_4:65784377-65784396 None:intergenic 35.0%
ATAAGTCTCAAATTCAGTGG+CGG - chr6_4:65784510-65784529 Msa0993280:intron 35.0%
TTAATTGTGTGGCAATGCTA+TGG - chr6_4:65784699-65784718 Msa0993280:CDS 35.0%
ATGCTATGGTGAATGATTGA+TGG - chr6_4:65784713-65784732 Msa0993280:CDS 35.0%
! ATGGACTAATGCAGATATCA+AGG - chr6_4:65784732-65784751 Msa0993280:CDS 35.0%
!! ATGAGTTGATTCATGCAAGA+TGG - chr6_4:65784757-65784776 Msa0993280:CDS 35.0%
!! TGAGTTGATTCATGCAAGAT+GGG - chr6_4:65784758-65784777 Msa0993280:CDS 35.0%
GGAAATCCAGTTAAATTCAG+TGG - chr6_4:65783124-65783143 Msa0993280:CDS 35.0%
TTAAATTCAGTGGTGCAACT+AGG - chr6_4:65783134-65783153 Msa0993280:CDS 35.0%
!! GAAAAGAGCAACAGTTTTGA+AGG + chr6_4:65783188-65783207 None:intergenic 35.0%
AGTGCATGTTTGAATTATCG+CGG - chr6_4:65783598-65783617 Msa0993280:intron 35.0%
AGTTGCGTTAAAATCACGTT+TGG - chr6_4:65783752-65783771 Msa0993280:CDS 35.0%
!! TCTTTTGATAATTTGGTGGC+AGG - chr6_4:65783927-65783946 Msa0993280:CDS 35.0%
TAGAAATCACATACTCTCCA+GGG + chr6_4:65784028-65784047 None:intergenic 35.0%
AAACCTAAAATGCAGTGGTA+GGG + chr6_4:65784376-65784395 None:intergenic 35.0%
TAAACCTAAAATGCAGTGGT+AGG + chr6_4:65784377-65784396 None:intergenic 35.0%
ATAAGTCTCAAATTCAGTGG+CGG - chr6_4:65784510-65784529 Msa0993280:intron 35.0%
TTAATTGTGTGGCAATGCTA+TGG - chr6_4:65784699-65784718 Msa0993280:CDS 35.0%
ATGCTATGGTGAATGATTGA+TGG - chr6_4:65784713-65784732 Msa0993280:CDS 35.0%
! ATGGACTAATGCAGATATCA+AGG - chr6_4:65784732-65784751 Msa0993280:CDS 35.0%
!! ATGAGTTGATTCATGCAAGA+TGG - chr6_4:65784757-65784776 Msa0993280:CDS 35.0%
!! TGAGTTGATTCATGCAAGAT+GGG - chr6_4:65784758-65784777 Msa0993280:CDS 35.0%
! CTTGGAATGTCTGAAATGCT+TGG - chr6_4:65783103-65783122 Msa0993280:CDS 40.0%
GTTGCACCACTGAATTTAAC+TGG + chr6_4:65783133-65783152 None:intergenic 40.0%
GTAGATGGAGTTGAAGAAGA+AGG + chr6_4:65783166-65783185 None:intergenic 40.0%
!!! GCAACAGTTTTGAAGGTAGA+TGG + chr6_4:65783181-65783200 None:intergenic 40.0%
! AATCACAGCGTGTGGTATTT+TGG - chr6_4:65783640-65783659 Msa0993280:intron 40.0%
GGTTGGATTAATGGTGAGTT+AGG + chr6_4:65783718-65783737 None:intergenic 40.0%
TTTACGCACGGTTGGATTAA+TGG + chr6_4:65783727-65783746 None:intergenic 40.0%
TGCGTTAAAATCACGTTTGG+AGG - chr6_4:65783755-65783774 Msa0993280:CDS 40.0%
GTAGAAATCACATACTCTCC+AGG + chr6_4:65784029-65784048 None:intergenic 40.0%
TATGTGTGTCTATGCAGCTA+TGG - chr6_4:65784133-65784152 Msa0993280:intron 40.0%
! AGCTATGGTTACGATCCTTT+TGG - chr6_4:65784148-65784167 Msa0993280:intron 40.0%
! TTTCCCTACCACTGCATTTT+AGG - chr6_4:65784370-65784389 Msa0993280:intron 40.0%
! GTTGGCTCCATATTTGTTGA+AGG + chr6_4:65784820-65784839 None:intergenic 40.0%
AACAAATATGGAGCCAACTG+TGG - chr6_4:65784822-65784841 Msa0993280:CDS 40.0%
! CTTGGAATGTCTGAAATGCT+TGG - chr6_4:65783103-65783122 Msa0993280:CDS 40.0%
GTTGCACCACTGAATTTAAC+TGG + chr6_4:65783133-65783152 None:intergenic 40.0%
GTAGATGGAGTTGAAGAAGA+AGG + chr6_4:65783166-65783185 None:intergenic 40.0%
!!! GCAACAGTTTTGAAGGTAGA+TGG + chr6_4:65783181-65783200 None:intergenic 40.0%
! AATCACAGCGTGTGGTATTT+TGG - chr6_4:65783640-65783659 Msa0993280:intron 40.0%
GGTTGGATTAATGGTGAGTT+AGG + chr6_4:65783718-65783737 None:intergenic 40.0%
TTTACGCACGGTTGGATTAA+TGG + chr6_4:65783727-65783746 None:intergenic 40.0%
TGCGTTAAAATCACGTTTGG+AGG - chr6_4:65783755-65783774 Msa0993280:CDS 40.0%
GTAGAAATCACATACTCTCC+AGG + chr6_4:65784029-65784048 None:intergenic 40.0%
TATGTGTGTCTATGCAGCTA+TGG - chr6_4:65784133-65784152 Msa0993280:intron 40.0%
! AGCTATGGTTACGATCCTTT+TGG - chr6_4:65784148-65784167 Msa0993280:intron 40.0%
! TTTCCCTACCACTGCATTTT+AGG - chr6_4:65784370-65784389 Msa0993280:intron 40.0%
! GTTGGCTCCATATTTGTTGA+AGG + chr6_4:65784820-65784839 None:intergenic 40.0%
AACAAATATGGAGCCAACTG+TGG - chr6_4:65784822-65784841 Msa0993280:CDS 40.0%
!!! GAGGTGCTGCTTTCTTCTTT+TGG + chr6_4:65783210-65783229 None:intergenic 45.0%
AAAGCAGAAAGTGGCTACTC+CGG - chr6_4:65783234-65783253 Msa0993280:intron 45.0%
TGGTGACTTACCATACCACT+TGG + chr6_4:65783275-65783294 None:intergenic 45.0%
TTGAATTATCGCGGCGAGTT+TGG - chr6_4:65783607-65783626 Msa0993280:intron 45.0%
ATTGGAAGAATCACAGCGTG+TGG - chr6_4:65783632-65783651 Msa0993280:intron 45.0%
ACTCTTTCTTTACGCACGGT+TGG + chr6_4:65783735-65783754 None:intergenic 45.0%
CGCAACTCTTTCTTTACGCA+CGG + chr6_4:65783739-65783758 None:intergenic 45.0%
! TGATAATTTGGTGGCAGGTC+CGG - chr6_4:65783932-65783951 Msa0993280:CDS 45.0%
AGAAGGATCTTCTTGCCAGA+CGG - chr6_4:65783957-65783976 Msa0993280:CDS 45.0%
ACTTCTCCAGTCAAGTACTC+GGG + chr6_4:65784005-65784024 None:intergenic 45.0%
GACTTCTCCAGTCAAGTACT+CGG + chr6_4:65784006-65784025 None:intergenic 45.0%
GGCTTCTTGCTTAGACCAAA+AGG + chr6_4:65784166-65784185 None:intergenic 45.0%
ACATACTTGGCGAAGTCTTC+GGG + chr6_4:65784187-65784206 None:intergenic 45.0%
GACATACTTGGCGAAGTCTT+CGG + chr6_4:65784188-65784207 None:intergenic 45.0%
TGCTGGATTCATCATTCCTG+AGG - chr6_4:65784794-65784813 Msa0993280:CDS 45.0%
! CCATATTTGTTGAAGGCCTC+AGG + chr6_4:65784813-65784832 None:intergenic 45.0%
CCTGAGGCCTTCAACAAATA+TGG - chr6_4:65784810-65784829 Msa0993280:CDS 45.0%
! TCCTGAAGCAGTTTGGTTCA+AGG - chr6_4:65784845-65784864 Msa0993280:CDS 45.0%
ACCTTGAACCAAACTGCTTC+AGG + chr6_4:65784849-65784868 None:intergenic 45.0%
!!! GAGGTGCTGCTTTCTTCTTT+TGG + chr6_4:65783210-65783229 None:intergenic 45.0%
AAAGCAGAAAGTGGCTACTC+CGG - chr6_4:65783234-65783253 Msa0993280:intron 45.0%
TGGTGACTTACCATACCACT+TGG + chr6_4:65783275-65783294 None:intergenic 45.0%
TTGAATTATCGCGGCGAGTT+TGG - chr6_4:65783607-65783626 Msa0993280:intron 45.0%
ATTGGAAGAATCACAGCGTG+TGG - chr6_4:65783632-65783651 Msa0993280:intron 45.0%
ACTCTTTCTTTACGCACGGT+TGG + chr6_4:65783735-65783754 None:intergenic 45.0%
CGCAACTCTTTCTTTACGCA+CGG + chr6_4:65783739-65783758 None:intergenic 45.0%
! TGATAATTTGGTGGCAGGTC+CGG - chr6_4:65783932-65783951 Msa0993280:CDS 45.0%
AGAAGGATCTTCTTGCCAGA+CGG - chr6_4:65783957-65783976 Msa0993280:CDS 45.0%
ACTTCTCCAGTCAAGTACTC+GGG + chr6_4:65784005-65784024 None:intergenic 45.0%
GACTTCTCCAGTCAAGTACT+CGG + chr6_4:65784006-65784025 None:intergenic 45.0%
GGCTTCTTGCTTAGACCAAA+AGG + chr6_4:65784166-65784185 None:intergenic 45.0%
ACATACTTGGCGAAGTCTTC+GGG + chr6_4:65784187-65784206 None:intergenic 45.0%
GACATACTTGGCGAAGTCTT+CGG + chr6_4:65784188-65784207 None:intergenic 45.0%
TGCTGGATTCATCATTCCTG+AGG - chr6_4:65784794-65784813 Msa0993280:CDS 45.0%
! CCATATTTGTTGAAGGCCTC+AGG + chr6_4:65784813-65784832 None:intergenic 45.0%
CCTGAGGCCTTCAACAAATA+TGG - chr6_4:65784810-65784829 Msa0993280:CDS 45.0%
! TCCTGAAGCAGTTTGGTTCA+AGG - chr6_4:65784845-65784864 Msa0993280:CDS 45.0%
ACCTTGAACCAAACTGCTTC+AGG + chr6_4:65784849-65784868 None:intergenic 45.0%
AGCTGCAGTAGAAGCAGCAA+TGG + chr6_4:65783077-65783096 None:intergenic 50.0%
TCTACTGCAGCTGCTTCACT+TGG - chr6_4:65783085-65783104 Msa0993280:CDS 50.0%
ACCTCCACCAAAGCAGAAAG+TGG - chr6_4:65783225-65783244 Msa0993280:intron 50.0%
! GTAGCCACTTTCTGCTTTGG+TGG + chr6_4:65783232-65783251 None:intergenic 50.0%
! GGAGTAGCCACTTTCTGCTT+TGG + chr6_4:65783235-65783254 None:intergenic 50.0%
ATCGCGGCGAGTTTGGAAAT+TGG - chr6_4:65783614-65783633 Msa0993280:intron 50.0%
TGAGTTAGGCAGAATCGAGG+TGG + chr6_4:65783704-65783723 None:intergenic 50.0%
TGGTGAGTTAGGCAGAATCG+AGG + chr6_4:65783707-65783726 None:intergenic 50.0%
GGCAAGAAGATCCTTCTGTC+CGG + chr6_4:65783954-65783973 None:intergenic 50.0%
CTTCTCCAGTCAAGTACTCG+GGG + chr6_4:65784004-65784023 None:intergenic 50.0%
TACTTGACTGGAGAAGTCCC+TGG - chr6_4:65784008-65784027 Msa0993280:intron 50.0%
CATGCAAGATGGGCAATGCT+TGG - chr6_4:65784768-65784787 Msa0993280:CDS 50.0%
AACTGCTTCAGGACCACAGT+TGG + chr6_4:65784838-65784857 None:intergenic 50.0%
ACTGTGGTCCTGAAGCAGTT+TGG - chr6_4:65784838-65784857 Msa0993280:CDS 50.0%
AGCTGCAGTAGAAGCAGCAA+TGG + chr6_4:65783077-65783096 None:intergenic 50.0%
TCTACTGCAGCTGCTTCACT+TGG - chr6_4:65783085-65783104 Msa0993280:CDS 50.0%
ACCTCCACCAAAGCAGAAAG+TGG - chr6_4:65783225-65783244 Msa0993280:intron 50.0%
! GTAGCCACTTTCTGCTTTGG+TGG + chr6_4:65783232-65783251 None:intergenic 50.0%
! GGAGTAGCCACTTTCTGCTT+TGG + chr6_4:65783235-65783254 None:intergenic 50.0%
ATCGCGGCGAGTTTGGAAAT+TGG - chr6_4:65783614-65783633 Msa0993280:intron 50.0%
TGAGTTAGGCAGAATCGAGG+TGG + chr6_4:65783704-65783723 None:intergenic 50.0%
TGGTGAGTTAGGCAGAATCG+AGG + chr6_4:65783707-65783726 None:intergenic 50.0%
GGCAAGAAGATCCTTCTGTC+CGG + chr6_4:65783954-65783973 None:intergenic 50.0%
CTTCTCCAGTCAAGTACTCG+GGG + chr6_4:65784004-65784023 None:intergenic 50.0%
TACTTGACTGGAGAAGTCCC+TGG - chr6_4:65784008-65784027 Msa0993280:intron 50.0%
CATGCAAGATGGGCAATGCT+TGG - chr6_4:65784768-65784787 Msa0993280:CDS 50.0%
AACTGCTTCAGGACCACAGT+TGG + chr6_4:65784838-65784857 None:intergenic 50.0%
ACTGTGGTCCTGAAGCAGTT+TGG - chr6_4:65784838-65784857 Msa0993280:CDS 50.0%
! GCCACTTTCTGCTTTGGTGG+AGG + chr6_4:65783229-65783248 None:intergenic 55.0%
CTTCTTGCCAGACGGTCTCT+TGG - chr6_4:65783965-65783984 Msa0993280:CDS 55.0%
GATCTGTCCAAGAGACCGTC+TGG + chr6_4:65783975-65783994 None:intergenic 55.0%
GAGATCCCCGAGTACTTGAC+TGG - chr6_4:65783996-65784015 Msa0993280:intron 55.0%
! GCCACTTTCTGCTTTGGTGG+AGG + chr6_4:65783229-65783248 None:intergenic 55.0%
CTTCTTGCCAGACGGTCTCT+TGG - chr6_4:65783965-65783984 Msa0993280:CDS 55.0%
GATCTGTCCAAGAGACCGTC+TGG + chr6_4:65783975-65783994 None:intergenic 55.0%
GAGATCCCCGAGTACTTGAC+TGG - chr6_4:65783996-65784015 Msa0993280:intron 55.0%
GAGGAGCTCGCCAAGTGGTA+TGG - chr6_4:65783262-65783281 Msa0993280:intron 60.0%
!! TGGGCAATGCTTGGTGCTGC+TGG - chr6_4:65784777-65784796 Msa0993280:CDS 60.0%
GAGGAGCTCGCCAAGTGGTA+TGG - chr6_4:65783262-65783281 Msa0993280:intron 60.0%
!! TGGGCAATGCTTGGTGCTGC+TGG - chr6_4:65784777-65784796 Msa0993280:CDS 60.0%
TGGTGGCAGGTCCGGACAGA+AGG - chr6_4:65783940-65783959 Msa0993280:CDS 65.0%
TGGTGGCAGGTCCGGACAGA+AGG - chr6_4:65783940-65783959 Msa0993280:CDS 65.0%
AGTGGCTACTCCGGCCAGCG+AGG - chr6_4:65783243-65783262 Msa0993280:intron 70.0%
TTGGCGAGCTCCTCGCTGGC+CGG + chr6_4:65783256-65783275 None:intergenic 70.0%
CCACTTGGCGAGCTCCTCGC+TGG + chr6_4:65783260-65783279 None:intergenic 70.0%
CCAGCGAGGAGCTCGCCAAG+TGG - chr6_4:65783257-65783276 Msa0993280:intron 70.0%
AGTGGCTACTCCGGCCAGCG+AGG - chr6_4:65783243-65783262 Msa0993280:intron 70.0%
TTGGCGAGCTCCTCGCTGGC+CGG + chr6_4:65783256-65783275 None:intergenic 70.0%
CCACTTGGCGAGCTCCTCGC+TGG + chr6_4:65783260-65783279 None:intergenic 70.0%
CCAGCGAGGAGCTCGCCAAG+TGG - chr6_4:65783257-65783276 Msa0993280:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 65783067 65784881 65783067 ID=Msa0993280;Name=Msa0993280
chr6_4 mRNA 65783067 65784881 65783067 ID=Msa0993280-mRNA-1;Parent=Msa0993280;Name=Msa0993280-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|4|0|162
chr6_4 exon 65784665 65784881 65784665 ID=Msa0993280-mRNA-1:exon:12302;Parent=Msa0993280-mRNA-1
chr6_4 exon 65783915 65783999 65783915 ID=Msa0993280-mRNA-1:exon:12301;Parent=Msa0993280-mRNA-1
chr6_4 exon 65783748 65783798 65783748 ID=Msa0993280-mRNA-1:exon:12300;Parent=Msa0993280-mRNA-1
chr6_4 exon 65783067 65783202 65783067 ID=Msa0993280-mRNA-1:exon:12299;Parent=Msa0993280-mRNA-1
chr6_4 CDS 65784665 65784881 65784665 ID=Msa0993280-mRNA-1:cds;Parent=Msa0993280-mRNA-1
chr6_4 CDS 65783915 65783999 65783915 ID=Msa0993280-mRNA-1:cds;Parent=Msa0993280-mRNA-1
chr6_4 CDS 65783748 65783798 65783748 ID=Msa0993280-mRNA-1:cds;Parent=Msa0993280-mRNA-1
chr6_4 CDS 65783067 65783202 65783067 ID=Msa0993280-mRNA-1:cds;Parent=Msa0993280-mRNA-1
Gene Sequence

>Msa0993280

ATGGCTTCCATTGCTGCTTCTACTGCAGCTGCTTCACTTGGAATGTCTGAAATGCTTGGAAATCCAGTTAAATTCAGTGGTGCAACTAGGTCTGTTCCTTCTTCTTCAACTCCATCTACCTTCAAAACTGTTGCTCTTTTCCAAAAGAAGAAAGCAGCACCTCCACCAAAGCAGAAAGTGGCTACTCCGGCCAGCGAGGAGCTCGCCAAGTGGTATGGTCCGGACAGAAGGATCTTCTTGCCAGACGGTCTCTTGGACAGATCTGAGATCCCCGAGTACTTGACTGGAGAAGTCCCTGGAGACTATGGTTACGATCCTTTTGGTCTAAGCAAGAAGCCCGAAGACTTCGCCAAATATCAAGGATATGAGTTGATTCATGCAAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCCAACTGTGGTCCTGAAGCAGTTTGGTTCAAGGTATGCAAGCTCTAA

Protein sequence

>Msa0993280

MASIAASTAAASLGMSEMLGNPVKFSGATRSVPSSSTPSTFKTVALFQKKKAAPPPKQKVATPASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKVCKL*