AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841570 MtrunA17_Chr5g0411091 86.971 307 24 4 1 292 1 306 1.22e-155 437
Msa0841570 MtrunA17_Chr7g0267571 30.909 275 158 9 11 257 21 291 7.59e-28 109
Msa0841570 MtrunA17_Chr1g0177101 36.313 179 92 5 95 254 108 283 1.49e-26 105
Msa0841570 MtrunA17_Chr3g0116631 34.444 180 102 3 97 261 111 289 3.59e-26 104
Msa0841570 MtrunA17_Chr3g0132451 32.083 240 135 6 53 277 60 286 4.32e-25 101
Msa0841570 MtrunA17_Chr4g0058151 31.844 179 105 5 97 261 124 299 5.35e-22 93.6
Msa0841570 MtrunA17_Chr1g0168601 35.664 143 82 3 124 257 91 232 3.84e-21 89.7
Msa0841570 MtrunA17_Chr1g0181111 26.792 265 144 10 37 260 23 278 9.15e-17 78.6
Msa0841570 MtrunA17_Chr7g0265341 28.372 215 130 8 96 293 159 366 5.26e-16 78.2
Msa0841570 MtrunA17_Chr1g0179701 24.719 267 154 7 60 284 97 358 5.52e-16 78.2
Msa0841570 MtrunA17_Chr3g0087481 30.286 175 102 6 95 251 60 232 2.39e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841570 AT2G35410.1 49.049 263 104 7 22 261 23 278 1.00e-72 226
Msa0841570 AT4G09040.2 33.158 190 108 2 91 264 30 216 9.73e-31 115
Msa0841570 AT4G09040.1 33.333 189 107 2 92 264 91 276 5.22e-30 115
Msa0841570 AT5G50250.1 31.673 281 140 8 30 259 9 288 3.14e-27 107
Msa0841570 AT4G24770.1 35.260 173 99 4 97 257 152 323 4.12e-24 100
Msa0841570 AT4G24770.2 35.260 173 99 4 97 257 152 323 4.12e-24 100
Msa0841570 AT3G52380.1 30.978 184 105 5 97 259 118 300 6.95e-23 96.7
Msa0841570 AT2G37220.1 30.729 192 101 5 97 257 93 283 8.10e-21 90.5
Msa0841570 AT1G60000.1 29.474 190 120 4 81 257 68 256 2.76e-20 88.2
Msa0841570 AT3G52150.2 29.439 214 122 7 58 251 46 250 2.60e-15 74.3
Msa0841570 AT3G52150.1 29.439 214 122 7 58 251 46 250 2.60e-15 74.3
Msa0841570 AT4G34110.1 30.055 183 105 4 96 257 216 396 2.92e-14 73.2
Msa0841570 AT1G49760.1 28.962 183 107 3 96 257 225 405 8.15e-13 68.9
Msa0841570 AT1G49760.1 26.291 213 137 7 96 293 134 341 1.21e-11 65.5
Msa0841570 AT1G49760.2 28.962 183 107 3 96 257 225 405 8.15e-13 68.9
Msa0841570 AT1G49760.2 26.291 213 137 7 96 293 134 341 1.21e-11 65.5
Msa0841570 AT1G22760.1 25.926 216 140 5 94 293 135 346 5.22e-12 66.6
Msa0841570 AT2G23350.1 27.485 171 113 2 96 257 135 303 4.41e-11 63.9

Find 81 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGAATACCCTTAAAAT+TGG 0.142439 5_4:+17955413 None:intergenic
GTGGGAGCTGGAGGAGGTGG+AGG 0.249111 5_4:+17958774 None:intergenic
AAATACGAATTGAGATTTAT+AGG 0.249541 5_4:+17955447 None:intergenic
ACTTCTTCACTTCCAGCTTC+TGG 0.261287 5_4:+17955709 None:intergenic
AGGTTATACATTTGTTACTA+TGG 0.261835 5_4:-17960432 Msa0841570:CDS
AATACGAATTGAGATTTATA+GGG 0.280422 5_4:+17955448 None:intergenic
ACATTTGTTACTATGGATTC+AGG 0.282353 5_4:-17960425 Msa0841570:CDS
GTGGATATTGTGAGAGAAAA+TGG 0.287566 5_4:+17960888 None:intergenic
TGATCTTTGGATATGGTATA+TGG 0.299802 5_4:-17955627 Msa0841570:three_prime_UTR
TTAGGAATACCCTTAAAATT+GGG 0.308749 5_4:+17955414 None:intergenic
CATGTACTGATCTTTGGATA+TGG 0.322509 5_4:-17955634 Msa0841570:three_prime_UTR
TAAAGCGTAGCAGAGTGTTT+TGG 0.351271 5_4:+17960834 None:intergenic
CTCTGTATACATAGGTAATC+AGG 0.372624 5_4:+17955571 None:intergenic
GGAGCTGGAGGAGGTGGAGG+AGG 0.377123 5_4:+17958777 None:intergenic
TAGATTGTAAAGAGCAAAGA+TGG 0.379214 5_4:-17960464 Msa0841570:CDS
ATTAGGATTTATGACTCATC+TGG 0.380633 5_4:+17955661 None:intergenic
GGAGTGGGAGCTGGAGGAGG+TGG 0.381685 5_4:+17958771 None:intergenic
CTTCCCTTGCAAAGCAGAAA+TGG 0.396033 5_4:+17958560 None:intergenic
ATCCCTTTGCAGGAGTTACT+TGG 0.398199 5_4:-17955817 Msa0841570:intron
GGTGGGAAATCTGCTGGGTA+TGG 0.419393 5_4:-17958621 Msa0841570:CDS
AAGACAACCCTGGCTGAAAC+TGG 0.421042 5_4:+17958654 None:intergenic
AGCAAAGATGGGAAGGGAAA+AGG 0.425037 5_4:-17960452 Msa0841570:CDS
ACCCCTGGTGGGAAATCTGC+TGG 0.433529 5_4:-17958627 Msa0841570:CDS
TTAGGAGTGGGAGCTGGAGG+AGG 0.441065 5_4:+17958768 None:intergenic
ATTACATAACGTGCTTCCTT+AGG 0.449237 5_4:+17958750 None:intergenic
AGGGTTGTCTTTCAAACCCC+TGG 0.459212 5_4:-17958642 Msa0841570:CDS
GCCTTGGTCTCTTTCTAAGC+CGG 0.461671 5_4:-17960716 Msa0841570:CDS
TGGATTTGTTTCTTATCATA+CGG 0.462438 5_4:-17958601 Msa0841570:CDS
TCGTTGTCTTTAACTTGCCT+TGG 0.470028 5_4:-17960732 Msa0841570:CDS
TCAAAACACCAGTTTCAGCC+AGG 0.476508 5_4:-17958662 Msa0841570:CDS
TCTTTCTAAGCCGGATATCA+AGG 0.480039 5_4:-17960707 Msa0841570:CDS
GCGAAGAGATCCTTGATATC+CGG 0.480231 5_4:+17960697 None:intergenic
GGATTCAGGAGAGGAGGCTC+AGG 0.485969 5_4:-17960411 Msa0841570:CDS
AAGAAGAAAAGTGAAGTTTG+TGG 0.493594 5_4:+17960869 None:intergenic
AATACCCTTAAAATTGGGGC+TGG 0.495327 5_4:+17955419 None:intergenic
TCCTTAGGAGTGGGAGCTGG+AGG 0.495862 5_4:+17958765 None:intergenic
TAGATCTTGCTTTCCACGCA+AGG 0.504732 5_4:+17958715 None:intergenic
TTGATGTGTGAATACAGTTA+TGG 0.514213 5_4:+17961002 None:intergenic
GACGACACGCAACCAGAAGC+TGG 0.523376 5_4:-17955721 Msa0841570:CDS
TACCCAGCAGATTTCCCACC+AGG 0.524803 5_4:+17958624 None:intergenic
TCCTCCAGCTCCCACTCCTA+AGG 0.525600 5_4:-17958766 Msa0841570:CDS
TGTAAAGAGCAAAGATGGGA+AGG 0.529390 5_4:-17960459 Msa0841570:CDS
GCTTCCTTAGGAGTGGGAGC+TGG 0.530043 5_4:+17958762 None:intergenic
CTTCATATCTCTGTATACAT+AGG 0.531403 5_4:+17955563 None:intergenic
AAGGGATTGAAGTTGAAGCA+TGG 0.531889 5_4:+17960923 None:intergenic
GAGGTGGAGAAGTAGATAAG+AGG 0.542194 5_4:+17961067 None:intergenic
CTATGTATACAGAGATATGA+AGG 0.544245 5_4:-17955562 Msa0841570:three_prime_UTR
AGATTGTAAAGAGCAAAGAT+GGG 0.546323 5_4:-17960463 Msa0841570:CDS
GTTTGACATACCTTAAAATG+TGG 0.549505 5_4:-17955503 Msa0841570:three_prime_UTR
TAGGAATACCCTTAAAATTG+GGG 0.550388 5_4:+17955415 None:intergenic
CTGCCATTTCTGCTTTGCAA+GGG 0.550388 5_4:-17958563 Msa0841570:CDS
TATTTCGTTACTATCACCAA+TGG 0.551692 5_4:-17961040 Msa0841570:exon
CATTTCTGCTTTGCAAGGGA+AGG 0.553509 5_4:-17958559 Msa0841570:intron
GCTGCCATTTCTGCTTTGCA+AGG 0.563024 5_4:-17958564 Msa0841570:CDS
CCCCTGGTGGGAAATCTGCT+GGG 0.563781 5_4:-17958626 Msa0841570:CDS
TCTTGCTTTCCACGCAAGGT+TGG 0.567345 5_4:+17958719 None:intergenic
GTTGATTCTAACGTTGCCAT+TGG 0.567931 5_4:+17961024 None:intergenic
GAGTAGAAACCTCTACAAGC+TGG 0.574421 5_4:-17955601 Msa0841570:three_prime_UTR
TACTATGGATTCAGGAGAGG+AGG 0.578732 5_4:-17960417 Msa0841570:CDS
TGTTTCTTATCATACGGAGG+AGG 0.584671 5_4:-17958595 Msa0841570:CDS
TGTTACTATGGATTCAGGAG+AGG 0.585105 5_4:-17960420 Msa0841570:CDS
CCCAGCAGATTTCCCACCAG+GGG 0.587328 5_4:+17958626 None:intergenic
TCTATGCATCCAACCTTGCG+TGG 0.590146 5_4:-17958728 Msa0841570:CDS
GTTGTCTTTCAAACCCCTGG+TGG 0.593929 5_4:-17958639 Msa0841570:CDS
CAAAACACCAGTTTCAGCCA+GGG 0.593941 5_4:-17958661 Msa0841570:CDS
GGTAAAACTCCAGCTTGTAG+AGG 0.605360 5_4:+17955592 None:intergenic
TAACGTGCTTCCTTAGGAGT+GGG 0.608846 5_4:+17958756 None:intergenic
AGGAGTAGTGATGATGATGC+CGG 0.617036 5_4:+17961087 None:intergenic
TTGTCTTTCAAACCCCTGGT+GGG 0.617575 5_4:-17958638 Msa0841570:CDS
ATAACGTGCTTCCTTAGGAG+TGG 0.620126 5_4:+17958755 None:intergenic
GTAAAGAGCAAAGATGGGAA+GGG 0.628943 5_4:-17960458 Msa0841570:CDS
ACTCTGCTACGCTTTACAAG+AGG 0.635592 5_4:-17960827 Msa0841570:CDS
AAGGATCTCTTCGCTCAATG+TGG 0.649377 5_4:-17960688 Msa0841570:CDS
ATTTGTTTCTTATCATACGG+AGG 0.652812 5_4:-17958598 Msa0841570:CDS
AGTAACGAAATAAGACGAGG+TGG 0.654928 5_4:+17961051 None:intergenic
ACCCAGCAGATTTCCCACCA+GGG 0.675913 5_4:+17958625 None:intergenic
TGGAACTGTAATTGACGTTG+AGG 0.676463 5_4:-17960668 Msa0841570:intron
TCCGGCTTAGAAAGAGACCA+AGG 0.685478 5_4:+17960715 None:intergenic
AGGGGTTTGAAAGACAACCC+TGG 0.712579 5_4:+17958644 None:intergenic
GATAGTAACGAAATAAGACG+AGG 0.756502 5_4:+17961048 None:intergenic
AAGGCAAGTTAAAGACAACG+AGG 0.810771 5_4:+17960734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTAATTTTTGAATTTT+TGG - chr5_4:17955896-17955915 Msa0841570:intron 10.0%
!!! TCTATTTTTATTTTACTTTT+TGG - chr5_4:17956166-17956185 Msa0841570:intron 10.0%
!!! AATTTAGAATTTTCTTTTTA+AGG - chr5_4:17956332-17956351 Msa0841570:intron 10.0%
!!! AATTAGATAATTAATTTTAC+TGG - chr5_4:17956615-17956634 Msa0841570:intron 10.0%
!!! ATTAAGAAGATTCATTATTT+TGG + chr5_4:17956221-17956240 None:intergenic 15.0%
!! ATAATGAATCTTCTTAATAA+TGG - chr5_4:17956223-17956242 Msa0841570:intron 15.0%
!!! ATGAATAATATCTAAAACAT+AGG + chr5_4:17956896-17956915 None:intergenic 15.0%
!!! AAATATAGTAACTTTTACAT+TGG - chr5_4:17957531-17957550 Msa0841570:intron 15.0%
!!! TTCATTAAAATTTTCCTTTT+TGG - chr5_4:17957597-17957616 Msa0841570:intron 15.0%
!!! TCATTAAAATTTTCCTTTTT+GGG - chr5_4:17957598-17957617 Msa0841570:intron 15.0%
!!! ATTAAAGATTTTTTTCAACA+AGG + chr5_4:17958119-17958138 None:intergenic 15.0%
!! AAAATTATGAAAAAGAAACA+CGG + chr5_4:17958756-17958775 None:intergenic 15.0%
!!! TGTTTCTTTTTCATAATTTT+GGG - chr5_4:17958756-17958775 Msa0841570:CDS 15.0%
!! TTATAACATTAAAATTGTTG+AGG + chr5_4:17959161-17959180 None:intergenic 15.0%
!! ATTTGATATAGTTATTGTAT+AGG - chr5_4:17960089-17960108 Msa0841570:intron 15.0%
!! TATTAAGAAATTCAATGTTA+TGG - chr5_4:17960142-17960161 Msa0841570:intron 15.0%
!! GAATAAAAAATCATATGAAT+AGG - chr5_4:17960409-17960428 Msa0841570:CDS 15.0%
!! GAGAAAAACATAAATAAAAC+CGG - chr5_4:17955409-17955428 Msa0841570:three_prime_UTR 20.0%
!! TACTACATGATTGTTTAATT+TGG - chr5_4:17956001-17956020 Msa0841570:intron 20.0%
!!! ATTGTTTAATTTGGAGAAAT+GGG - chr5_4:17956010-17956029 Msa0841570:intron 20.0%
!! CAACAAATATAGAAAATAAG+AGG + chr5_4:17956992-17957011 None:intergenic 20.0%
!! TACTAAAATGTAAAAACTAG+AGG - chr5_4:17957125-17957144 Msa0841570:intron 20.0%
!!! AACTAAAATGGACATTTTAA+AGG + chr5_4:17957293-17957312 None:intergenic 20.0%
!!! ATTCATTTTTCATTCAACTT+CGG + chr5_4:17957414-17957433 None:intergenic 20.0%
!!! AATTTATTGTGTTTGACTTT+TGG - chr5_4:17958063-17958082 Msa0841570:intron 20.0%
!! GTTTAAAGATTATAGACTAA+TGG + chr5_4:17958290-17958309 None:intergenic 20.0%
!!! TGTTCAAGATATGTATTTTA+TGG - chr5_4:17958366-17958385 Msa0841570:intron 20.0%
!! AGATAAATGTAGAAAAGTAA+AGG + chr5_4:17958679-17958698 None:intergenic 20.0%
!!! TAATTGAAAATCCGATTTTA+AGG + chr5_4:17958725-17958744 None:intergenic 20.0%
!! AAATTATGAAAAAGAAACAC+GGG + chr5_4:17958755-17958774 None:intergenic 20.0%
!!! GTGTTTCTTTTTCATAATTT+TGG - chr5_4:17958755-17958774 Msa0841570:CDS 20.0%
!!! AAACTTCATGTTTATAGTTT+TGG + chr5_4:17959419-17959438 None:intergenic 20.0%
!! AAAAATTACCATACAGTAAA+AGG + chr5_4:17959954-17959973 None:intergenic 20.0%
!! ATAGAAAATGTAGAAACAAT+GGG - chr5_4:17960198-17960217 Msa0841570:intron 20.0%
!! TACATTCTTCTATTATAGTA+TGG - chr5_4:17960224-17960243 Msa0841570:intron 20.0%
!!! TAGCATGCTTAATTTTTATT+TGG - chr5_4:17960485-17960504 Msa0841570:intron 20.0%
!!! CTTAATTTTTATTTGGATTG+TGG - chr5_4:17960492-17960511 Msa0841570:intron 20.0%
!!! ATTCACAGTATTTTTCAATT+AGG - chr5_4:17960985-17961004 Msa0841570:CDS 20.0%
!!! TAAACTTTATCCACATTTTA+AGG + chr5_4:17961025-17961044 None:intergenic 20.0%
!! AATACGAATTGAGATTTATA+GGG + chr5_4:17961070-17961089 None:intergenic 20.0%
!! AAATACGAATTGAGATTTAT+AGG + chr5_4:17961071-17961090 None:intergenic 20.0%
! AAATGGAAAAAGAAGAAGAA+GGG + chr5_4:17955613-17955632 None:intergenic 25.0%
! AAAATGGAAAAAGAAGAAGA+AGG + chr5_4:17955614-17955633 None:intergenic 25.0%
!!! GATTGTTTAATTTGGAGAAA+TGG - chr5_4:17956009-17956028 Msa0841570:intron 25.0%
!! AGGTTATACATTTGTTACTA+TGG - chr5_4:17956083-17956102 Msa0841570:intron 25.0%
! GTAAAATAAAAATAGATGCG+AGG + chr5_4:17956162-17956181 None:intergenic 25.0%
!!! TGGTTGATAATATGAGATAA+AGG + chr5_4:17956438-17956457 None:intergenic 25.0%
! TGCTTCATAATTATTTCATC+TGG + chr5_4:17956502-17956521 None:intergenic 25.0%
! GATGAAATAATTATGAAGCA+TGG - chr5_4:17956502-17956521 Msa0841570:intron 25.0%
! TACTTGAAAAATGTCAAGAA+AGG - chr5_4:17956745-17956764 Msa0841570:intron 25.0%
!!! TTTGTATGTTAGTCTTAACA+GGG + chr5_4:17956815-17956834 None:intergenic 25.0%
!!! CTTTGAAGTTTAGTTATTTG+AGG - chr5_4:17957035-17957054 Msa0841570:intron 25.0%
!! AACCAAATTAACACATGTTT+TGG + chr5_4:17957080-17957099 None:intergenic 25.0%
!! AAAACATGTGTTAATTTGGT+TGG - chr5_4:17957079-17957098 Msa0841570:intron 25.0%
!! AAACATGTGTTAATTTGGTT+GGG - chr5_4:17957080-17957099 Msa0841570:intron 25.0%
! ATTATATCACACTTCTTTGA+GGG + chr5_4:17957192-17957211 None:intergenic 25.0%
! ATACAGAAAGGAAACTAAAA+TGG + chr5_4:17957305-17957324 None:intergenic 25.0%
! GAGATATAACATATACAGAA+AGG + chr5_4:17957317-17957336 None:intergenic 25.0%
!!! TTTGTGTGGCTATTATTTTA+AGG - chr5_4:17957467-17957486 Msa0841570:intron 25.0%
!!! TTGTGTGGCTATTATTTTAA+GGG - chr5_4:17957468-17957487 Msa0841570:intron 25.0%
! CAATTTCTCAAAAGTCAAAA+AGG - chr5_4:17957566-17957585 Msa0841570:intron 25.0%
!! TGGATTTGTTTCTTATCATA+CGG - chr5_4:17957914-17957933 Msa0841570:intron 25.0%
! CATATGTAAATAAATAGCAG+AGG + chr5_4:17958012-17958031 None:intergenic 25.0%
! TGGAGACAATTTGATATTAA+TGG - chr5_4:17958083-17958102 Msa0841570:intron 25.0%
! ATAGACTAATGGTGTAAAAA+CGG + chr5_4:17958279-17958298 None:intergenic 25.0%
!! ATATAAGCATACAACTTTTG+TGG - chr5_4:17958558-17958577 Msa0841570:intron 25.0%
! AATTATGAAAAAGAAACACG+GGG + chr5_4:17958754-17958773 None:intergenic 25.0%
!! TTTTACTAACAAAGCACATA+AGG - chr5_4:17959438-17959457 Msa0841570:intron 25.0%
! TTTACTAACAAAGCACATAA+GGG - chr5_4:17959439-17959458 Msa0841570:intron 25.0%
! TTAAATATTACTGCTCTTTG+AGG - chr5_4:17959480-17959499 Msa0841570:intron 25.0%
! TAAATATTACTGCTCTTTGA+GGG - chr5_4:17959481-17959500 Msa0841570:intron 25.0%
! TTGTTGTGATACAATGAATT+TGG - chr5_4:17959648-17959667 Msa0841570:intron 25.0%
! TACAATGAATTTGGTTAAGT+TGG - chr5_4:17959657-17959676 Msa0841570:intron 25.0%
!!! TGCTATTTCACTTCTATATA+AGG + chr5_4:17959978-17959997 None:intergenic 25.0%
! TGATATAGTTATTGTATAGG+AGG - chr5_4:17960092-17960111 Msa0841570:intron 25.0%
! GATAGAAAATGTAGAAACAA+TGG - chr5_4:17960197-17960216 Msa0841570:intron 25.0%
!! CAAGTAGATATTATTTGTTG+AGG - chr5_4:17960365-17960384 Msa0841570:intron 25.0%
!!! GTTCATTTTTATACACAACT+TGG - chr5_4:17960517-17960536 Msa0841570:intron 25.0%
! GAAAAAAAAGTTAAAGAAGC+TGG - chr5_4:17960746-17960765 Msa0841570:CDS 25.0%
! AGATCAGTACATGAAAAATT+AGG + chr5_4:17960874-17960893 None:intergenic 25.0%
!!! ATTTTTCATGTACTGATCTT+TGG - chr5_4:17960875-17960894 Msa0841570:CDS 25.0%
! TTAGGAATACCCTTAAAATT+GGG + chr5_4:17961104-17961123 None:intergenic 25.0%
! TTTAGGAATACCCTTAAAAT+TGG + chr5_4:17961105-17961124 None:intergenic 25.0%
TATTTCGTTACTATCACCAA+TGG - chr5_4:17955475-17955494 Msa0841570:three_prime_UTR 30.0%
TTGATGTGTGAATACAGTTA+TGG + chr5_4:17955516-17955535 None:intergenic 30.0%
!! CTGGTGATTTTGATAAGAAA+TGG + chr5_4:17955559-17955578 None:intergenic 30.0%
AAGAAGAAAAGTGAAGTTTG+TGG + chr5_4:17955649-17955668 None:intergenic 30.0%
ATGACATGATTAAGAGTTTG+TGG - chr5_4:17955960-17955979 Msa0841570:intron 30.0%
TAGATTGTAAAGAGCAAAGA+TGG - chr5_4:17956051-17956070 Msa0841570:intron 30.0%
AGATTGTAAAGAGCAAAGAT+GGG - chr5_4:17956052-17956071 Msa0841570:intron 30.0%
! ACATTTGTTACTATGGATTC+AGG - chr5_4:17956090-17956109 Msa0841570:intron 30.0%
! ACCAAAGAATCACATCATTT+TGG - chr5_4:17956285-17956304 Msa0841570:intron 30.0%
TCCAAAATGATGTGATTCTT+TGG + chr5_4:17956289-17956308 None:intergenic 30.0%
!! AGACAAGAAATGAGAGTATT+GGG + chr5_4:17956595-17956614 None:intergenic 30.0%
! TAGACAAGAAATGAGAGTAT+TGG + chr5_4:17956596-17956615 None:intergenic 30.0%
!! TTTTACTGGCTAACATGATT+TGG - chr5_4:17956629-17956648 Msa0841570:intron 30.0%
!!! TCTTTTTTGACACTCAACTA+TGG - chr5_4:17956654-17956673 Msa0841570:intron 30.0%
!! GTTTGTATGTTAGTCTTAAC+AGG + chr5_4:17956816-17956835 None:intergenic 30.0%
TGCCAAAACATGTGTTAATT+TGG - chr5_4:17957075-17957094 Msa0841570:intron 30.0%
GATTATATCACACTTCTTTG+AGG + chr5_4:17957193-17957212 None:intergenic 30.0%
ACGACCAGAAATTCATAAAA+GGG - chr5_4:17957230-17957249 Msa0841570:intron 30.0%
! ACTTCCCTTTTATGAATTTC+TGG + chr5_4:17957237-17957256 None:intergenic 30.0%
CACAAAAGTTGAATGAGATA+TGG + chr5_4:17957453-17957472 None:intergenic 30.0%
! TATCTCATTCAACTTTTGTG+TGG - chr5_4:17957453-17957472 Msa0841570:intron 30.0%
! ATTTGTTTCTTATCATACGG+AGG - chr5_4:17957917-17957936 Msa0841570:intron 30.0%
AGTTATCATCTCATTGTTCA+TGG - chr5_4:17957980-17957999 Msa0841570:intron 30.0%
GTATCTTTAAGCAGAACTTT+AGG - chr5_4:17958332-17958351 Msa0841570:intron 30.0%
TAAGACTCGATGATATTGTT+TGG - chr5_4:17958420-17958439 Msa0841570:intron 30.0%
TCGATGATATTGTTTGGATT+TGG - chr5_4:17958426-17958445 Msa0841570:intron 30.0%
TGATATTGTTTGGATTTGGA+TGG - chr5_4:17958430-17958449 Msa0841570:intron 30.0%
TCAAATAGCCAAGTATAGTT+TGG + chr5_4:17958456-17958475 None:intergenic 30.0%
! CAACTTTTGTGGAGATATAA+AGG - chr5_4:17958569-17958588 Msa0841570:CDS 30.0%
GGAGATATAAAGGCTAAATA+TGG - chr5_4:17958579-17958598 Msa0841570:CDS 30.0%
! TTATTGGTGCTTTGATATGT+CGG + chr5_4:17958614-17958633 None:intergenic 30.0%
ACTCTAGTGATCCTTAAAAT+CGG - chr5_4:17958711-17958730 Msa0841570:CDS 30.0%
!! TAATTTTGGGTCAGAGTAAA+TGG - chr5_4:17958769-17958788 Msa0841570:CDS 30.0%
ACAGATAAATTGCATTTGCA+TGG - chr5_4:17958980-17958999 Msa0841570:intron 30.0%
TAAAATAGATGCTGTAGTAG+AGG - chr5_4:17959049-17959068 Msa0841570:intron 30.0%
!!! ATAGTTTTGGTTGAATCAGA+GGG + chr5_4:17959406-17959425 None:intergenic 30.0%
!!! TATAGTTTTGGTTGAATCAG+AGG + chr5_4:17959407-17959426 None:intergenic 30.0%
AAATACCACCAATAGGATTA+AGG + chr5_4:17959556-17959575 None:intergenic 30.0%
ACCACTTACTCTATTGATAT+AGG - chr5_4:17959602-17959621 Msa0841570:intron 30.0%
TGTGTCATGTAGTTGAAAAT+TGG - chr5_4:17959724-17959743 Msa0841570:intron 30.0%
GTGTCATGTAGTTGAAAATT+GGG - chr5_4:17959725-17959744 Msa0841570:intron 30.0%
TAAAAACCAATTGAGGCTTA+TGG - chr5_4:17959860-17959879 Msa0841570:intron 30.0%
! AGTGTTTTCCTTTTACTGTA+TGG - chr5_4:17959943-17959962 Msa0841570:intron 30.0%
ATAGAAGTGAAATAGCACTA+CGG - chr5_4:17959981-17960000 Msa0841570:intron 30.0%
! TTGCAAGCATTTTGTTAAAG+AGG + chr5_4:17960348-17960367 None:intergenic 30.0%
TATGAATAGGCTTGTCTTAA+AGG - chr5_4:17960422-17960441 Msa0841570:CDS 30.0%
ACAAAAGGAAAAGCTGAAAT+AGG + chr5_4:17960606-17960625 None:intergenic 30.0%
GACAGTAACAAACAAACAAA+AGG + chr5_4:17960621-17960640 None:intergenic 30.0%
!!! TCACTTATTTTTACGAGAAG+TGG + chr5_4:17960728-17960747 None:intergenic 30.0%
ATTAGGATTTATGACTCATC+TGG + chr5_4:17960857-17960876 None:intergenic 30.0%
TGATCTTTGGATATGGTATA+TGG - chr5_4:17960888-17960907 Msa0841570:CDS 30.0%
CTTCATATCTCTGTATACAT+AGG + chr5_4:17960955-17960974 None:intergenic 30.0%
CTATGTATACAGAGATATGA+AGG - chr5_4:17960953-17960972 Msa0841570:CDS 30.0%
GTTTGACATACCTTAAAATG+TGG - chr5_4:17961012-17961031 Msa0841570:CDS 30.0%
TAGGAATACCCTTAAAATTG+GGG + chr5_4:17961103-17961122 None:intergenic 30.0%
GATAGTAACGAAATAAGACG+AGG + chr5_4:17955470-17955489 None:intergenic 35.0%
! AGTTGAAGCATGGAGTTTTA+TGG + chr5_4:17955585-17955604 None:intergenic 35.0%
GTGGATATTGTGAGAGAAAA+TGG + chr5_4:17955630-17955649 None:intergenic 35.0%
! GTATGTTTGTCTGTTCTGAA+TGG - chr5_4:17956190-17956209 Msa0841570:intron 35.0%
!!! TCACATCATTTTGGAACTCT+TGG - chr5_4:17956294-17956313 Msa0841570:intron 35.0%
CACGACCAGAAATTCATAAA+AGG - chr5_4:17957229-17957248 Msa0841570:intron 35.0%
CTCTAGCAAAAAACTTCCAA+CGG - chr5_4:17957334-17957353 Msa0841570:intron 35.0%
ACCACACAATTAGATGTCAT+GGG + chr5_4:17957663-17957682 None:intergenic 35.0%
AACCACACAATTAGATGTCA+TGG + chr5_4:17957664-17957683 None:intergenic 35.0%
ATTACATAACGTGCTTCCTT+AGG + chr5_4:17957768-17957787 None:intergenic 35.0%
TCTTCCAATGATATCTCACA+TGG + chr5_4:17958247-17958266 None:intergenic 35.0%
!!! TGGTTTTGTAGTGTTTTGAG+TGG - chr5_4:17958497-17958516 Msa0841570:intron 35.0%
!! TTTGTAGTGTTTTGAGTGGT+TGG - chr5_4:17958501-17958520 Msa0841570:intron 35.0%
!! GTTTTGAGTGGTTGGATATA+TGG - chr5_4:17958509-17958528 Msa0841570:intron 35.0%
CAAGCTAAGTGAAAATCAGA+AGG + chr5_4:17958647-17958666 None:intergenic 35.0%
CATATTGGTGCAGAAAATAC+TGG + chr5_4:17958815-17958834 None:intergenic 35.0%
! TCTGCACCAATATGTTTTCA+CGG - chr5_4:17958821-17958840 Msa0841570:intron 35.0%
!! AAAGCACCGTGAAAACATAT+TGG + chr5_4:17958830-17958849 None:intergenic 35.0%
!!! CGGTGCTTTTGTTTTAAACT+AGG - chr5_4:17958841-17958860 Msa0841570:intron 35.0%
ATTGTTAAGCTCAGCTATGT+AGG - chr5_4:17958878-17958897 Msa0841570:intron 35.0%
!! AAGAAGCATCTGTGTATTCA+GGG - chr5_4:17959099-17959118 Msa0841570:intron 35.0%
TAAAATTGTTGAGGTGATCG+CGG + chr5_4:17959152-17959171 None:intergenic 35.0%
AATGTTATAAACCCTAACCC+AGG - chr5_4:17959171-17959190 Msa0841570:intron 35.0%
ATGTTATAAACCCTAACCCA+GGG - chr5_4:17959172-17959191 Msa0841570:intron 35.0%
! ATGCAATTTTTCTTGTGCAG+CGG - chr5_4:17959517-17959536 Msa0841570:intron 35.0%
!! GTATTTCATGCGGTTTTGAT+GGG - chr5_4:17959570-17959589 Msa0841570:intron 35.0%
GCCTATATCAATAGAGTAAG+TGG + chr5_4:17959606-17959625 None:intergenic 35.0%
! AGGCTTGAATTTTGCAAACA+AGG - chr5_4:17959622-17959641 Msa0841570:intron 35.0%
ATATGTGACTAATACGGCTA+TGG - chr5_4:17959751-17959770 Msa0841570:intron 35.0%
GTGTGAGTAAAAACCAATTG+AGG - chr5_4:17959853-17959872 Msa0841570:intron 35.0%
! TCTTTTCCATAAGCCTCAAT+TGG + chr5_4:17959869-17959888 None:intergenic 35.0%
! GTTACTTTAATTGAGCTGAG+AGG - chr5_4:17960049-17960068 Msa0841570:intron 35.0%
TTAATTGAGCTGAGAGGATA+AGG - chr5_4:17960055-17960074 Msa0841570:intron 35.0%
GTTATTGTATAGGAGGAGTT+TGG - chr5_4:17960099-17960118 Msa0841570:intron 35.0%
TTACTAGTGTACTGAGATAC+AGG - chr5_4:17960255-17960274 Msa0841570:intron 35.0%
GGTAAAGAATGAAACCAGAT+GGG + chr5_4:17960585-17960604 None:intergenic 35.0%
AGGTAAAGAATGAAACCAGA+TGG + chr5_4:17960586-17960605 None:intergenic 35.0%
! CATGTACTGATCTTTGGATA+TGG - chr5_4:17960881-17960900 Msa0841570:CDS 35.0%
CTCTGTATACATAGGTAATC+AGG + chr5_4:17960947-17960966 None:intergenic 35.0%
! TTTTTCCAGCCCCAATTTTA+AGG - chr5_4:17961091-17961110 Msa0841570:five_prime_UTR 35.0%
! TTTTCCAGCCCCAATTTTAA+GGG - chr5_4:17961092-17961111 Msa0841570:five_prime_UTR 35.0%
AGTAACGAAATAAGACGAGG+TGG + chr5_4:17955467-17955486 None:intergenic 40.0%
! GTTGATTCTAACGTTGCCAT+TGG + chr5_4:17955494-17955513 None:intergenic 40.0%
!! GCATGGAGTTTTATGGAATC+TGG + chr5_4:17955578-17955597 None:intergenic 40.0%
AAGGGATTGAAGTTGAAGCA+TGG + chr5_4:17955595-17955614 None:intergenic 40.0%
!! GAGTGTTTTGGATTTGGAAG+AGG + chr5_4:17955672-17955691 None:intergenic 40.0%
!! GTAGCAGAGTGTTTTGGATT+TGG + chr5_4:17955678-17955697 None:intergenic 40.0%
!! TAAAGCGTAGCAGAGTGTTT+TGG + chr5_4:17955684-17955703 None:intergenic 40.0%
AAGGCAAGTTAAAGACAACG+AGG + chr5_4:17955784-17955803 None:intergenic 40.0%
!! TCGTTGTCTTTAACTTGCCT+TGG - chr5_4:17955783-17955802 Msa0841570:CDS 40.0%
TCTTTCTAAGCCGGATATCA+AGG - chr5_4:17955808-17955827 Msa0841570:CDS 40.0%
TGGAACTGTAATTGACGTTG+AGG - chr5_4:17955847-17955866 Msa0841570:intron 40.0%
TGTAAAGAGCAAAGATGGGA+AGG - chr5_4:17956056-17956075 Msa0841570:intron 40.0%
GTAAAGAGCAAAGATGGGAA+GGG - chr5_4:17956057-17956076 Msa0841570:intron 40.0%
TGTTACTATGGATTCAGGAG+AGG - chr5_4:17956095-17956114 Msa0841570:intron 40.0%
! TGTTTGTCTGTTCTGAATGG+TGG - chr5_4:17956193-17956212 Msa0841570:intron 40.0%
GACATAGACTGTGCAATGAA+AGG - chr5_4:17956245-17956264 Msa0841570:intron 40.0%
AAAGGAGTTGCGAGTCATAA+GGG + chr5_4:17956420-17956439 None:intergenic 40.0%
TAAAGGAGTTGCGAGTCATA+AGG + chr5_4:17956421-17956440 None:intergenic 40.0%
ACTCTTAACACCTCAAGAAG+GGG + chr5_4:17956533-17956552 None:intergenic 40.0%
GACTCTTAACACCTCAAGAA+GGG + chr5_4:17956534-17956553 None:intergenic 40.0%
AGACTCTTAACACCTCAAGA+AGG + chr5_4:17956535-17956554 None:intergenic 40.0%
TTTGACACTCAACTATGGCT+TGG - chr5_4:17956659-17956678 Msa0841570:intron 40.0%
TTTGGCATAGCATGTTCAAC+TGG + chr5_4:17957062-17957081 None:intergenic 40.0%
! TGTTAATTTGGTTGGGACGA+TGG - chr5_4:17957087-17957106 Msa0841570:intron 40.0%
CTGGTTAAGGAATCCCAAAA+AGG + chr5_4:17957614-17957633 None:intergenic 40.0%
!! ATGTCATGGGTCTTGTTAAC+CGG + chr5_4:17957650-17957669 None:intergenic 40.0%
ACCCATGACATCTAATTGTG+TGG - chr5_4:17957659-17957678 Msa0841570:intron 40.0%
GACATCTAATTGTGTGGTTC+AGG - chr5_4:17957665-17957684 Msa0841570:intron 40.0%
TGTGTGGTTCAGGAAATATC+AGG - chr5_4:17957675-17957694 Msa0841570:intron 40.0%
AAATATCAGGCCGGATAGTA+AGG - chr5_4:17957688-17957707 Msa0841570:intron 40.0%
AATATCAGGCCGGATAGTAA+GGG - chr5_4:17957689-17957708 Msa0841570:intron 40.0%
CAAACTCTACCCTTACTATC+CGG + chr5_4:17957701-17957720 None:intergenic 40.0%
AGTAAGGGTAGAGTTTGCAA+AGG - chr5_4:17957704-17957723 Msa0841570:intron 40.0%
GTAAGGGTAGAGTTTGCAAA+GGG - chr5_4:17957705-17957724 Msa0841570:intron 40.0%
TGTTTCTTATCATACGGAGG+AGG - chr5_4:17957920-17957939 Msa0841570:intron 40.0%
CATGGCGAGAAAATATTGGA+TGG + chr5_4:17958198-17958217 None:intergenic 40.0%
GCTACATGGCGAGAAAATAT+TGG + chr5_4:17958202-17958221 None:intergenic 40.0%
TACCCTGAGAAATAGCTACA+TGG + chr5_4:17958216-17958235 None:intergenic 40.0%
TTGGATGGCCAAACTATACT+TGG - chr5_4:17958445-17958464 Msa0841570:intron 40.0%
ACTTGGCTATTTGAGTGTCT+AGG - chr5_4:17958462-17958481 Msa0841570:intron 40.0%
TGTCTAGGTTATAGCTGCAT+TGG - chr5_4:17958477-17958496 Msa0841570:intron 40.0%
AAGTGAAAATCAGAAGGTGG+TGG + chr5_4:17958641-17958660 None:intergenic 40.0%
GCTAAGTGAAAATCAGAAGG+TGG + chr5_4:17958644-17958663 None:intergenic 40.0%
CTCCTTCGGATATGAAATTC+AGG + chr5_4:17959075-17959094 None:intergenic 40.0%
GATGCTTCTTCTAACTCCTT+CGG + chr5_4:17959089-17959108 None:intergenic 40.0%
!! GAAGAAGCATCTGTGTATTC+AGG - chr5_4:17959098-17959117 Msa0841570:intron 40.0%
!! AGAAGCATCTGTGTATTCAG+GGG - chr5_4:17959100-17959119 Msa0841570:intron 40.0%
CAGAGCTTCTTAGGGATATA+GGG - chr5_4:17959123-17959142 Msa0841570:intron 40.0%
AAATGAGTTTCCCTGGGTTA+GGG + chr5_4:17959185-17959204 None:intergenic 40.0%
AAAATGAGTTTCCCTGGGTT+AGG + chr5_4:17959186-17959205 None:intergenic 40.0%
CATGCAAAATGAGTTTCCCT+GGG + chr5_4:17959191-17959210 None:intergenic 40.0%
ACATGCAAAATGAGTTTCCC+TGG + chr5_4:17959192-17959211 None:intergenic 40.0%
AGACGAACAATGACACATGT+TGG + chr5_4:17959307-17959326 None:intergenic 40.0%
CAAAGCACATAAGGGAAAGA+AGG - chr5_4:17959447-17959466 Msa0841570:intron 40.0%
! CCTATTGGTGGTATTTCATG+CGG - chr5_4:17959560-17959579 Msa0841570:intron 40.0%
!! GGTATTTCATGCGGTTTTGA+TGG - chr5_4:17959569-17959588 Msa0841570:intron 40.0%
GGGTGCATATGTGACTAATA+CGG - chr5_4:17959745-17959764 Msa0841570:intron 40.0%
TGGATGCATCATAAGGAGTT+GGG - chr5_4:17959794-17959813 Msa0841570:intron 40.0%
TCTGCAATATGCCAGTGAAA+GGG - chr5_4:17959821-17959840 Msa0841570:intron 40.0%
TTGAGGCTTATGGAAAAGAG+TGG - chr5_4:17959870-17959889 Msa0841570:intron 40.0%
TGAGGCTTATGGAAAAGAGT+GGG - chr5_4:17959871-17959890 Msa0841570:intron 40.0%
! TAAGTATTGCGCTGTAGTGA+TGG - chr5_4:17959908-17959927 Msa0841570:intron 40.0%
AAATAGCACTACGGTGAACA+AGG - chr5_4:17959990-17960009 Msa0841570:intron 40.0%
!! CATATAGTTTGCTAGTGCAG+TGG - chr5_4:17960020-17960039 Msa0841570:intron 40.0%
GATGGGAATACACACAATGA+CGG + chr5_4:17960568-17960587 None:intergenic 40.0%
TCATTGTGTGTATTCCCATC+TGG - chr5_4:17960568-17960587 Msa0841570:intron 40.0%
AATACCCTTAAAATTGGGGC+TGG + chr5_4:17961099-17961118 None:intergenic 40.0%
! AGGAGTAGTGATGATGATGC+CGG + chr5_4:17955431-17955450 None:intergenic 45.0%
GAGGTGGAGAAGTAGATAAG+AGG + chr5_4:17955451-17955470 None:intergenic 45.0%
ACTCTGCTACGCTTTACAAG+AGG - chr5_4:17955688-17955707 Msa0841570:CDS 45.0%
GCGAAGAGATCCTTGATATC+CGG + chr5_4:17955821-17955840 None:intergenic 45.0%
AAGGATCTCTTCGCTCAATG+TGG - chr5_4:17955827-17955846 Msa0841570:intron 45.0%
AGCAAAGATGGGAAGGGAAA+AGG - chr5_4:17956063-17956082 Msa0841570:intron 45.0%
TACTATGGATTCAGGAGAGG+AGG - chr5_4:17956098-17956117 Msa0841570:intron 45.0%
AAGGAGTTGCGAGTCATAAG+GGG + chr5_4:17956419-17956438 None:intergenic 45.0%
!! ACTCAACTATGGCTTGGTAC+AGG - chr5_4:17956665-17956684 Msa0841570:intron 45.0%
GTTTGTGCTAGTGTTGTGTC+TGG - chr5_4:17956924-17956943 Msa0841570:intron 45.0%
ATGAAGCACGAAGACAACTG+TGG + chr5_4:17956953-17956972 None:intergenic 45.0%
!! AGGGAAGTTTTGTCACTCTG+CGG - chr5_4:17957249-17957268 Msa0841570:intron 45.0%
TGGAGCTTAGTTTAGTCCGT+TGG + chr5_4:17957353-17957372 None:intergenic 45.0%
!! AACGGACTAAACTAAGCTCC+AGG - chr5_4:17957352-17957371 Msa0841570:intron 45.0%
! CGAAGCATCATCTCTATTCC+TGG + chr5_4:17957373-17957392 None:intergenic 45.0%
TGGTTCAGGAAATATCAGGC+CGG - chr5_4:17957679-17957698 Msa0841570:intron 45.0%
TAACGTGCTTCCTTAGGAGT+GGG + chr5_4:17957762-17957781 None:intergenic 45.0%
ATAACGTGCTTCCTTAGGAG+TGG + chr5_4:17957763-17957782 None:intergenic 45.0%
TAGATCTTGCTTTCCACGCA+AGG + chr5_4:17957803-17957822 None:intergenic 45.0%
TCAAAACACCAGTTTCAGCC+AGG - chr5_4:17957853-17957872 Msa0841570:intron 45.0%
CAAAACACCAGTTTCAGCCA+GGG - chr5_4:17957854-17957873 Msa0841570:intron 45.0%
TTGTCTTTCAAACCCCTGGT+GGG - chr5_4:17957877-17957896 Msa0841570:intron 45.0%
! CTGCCATTTCTGCTTTGCAA+GGG - chr5_4:17957952-17957971 Msa0841570:intron 45.0%
CTTCCCTTGCAAAGCAGAAA+TGG + chr5_4:17957958-17957977 None:intergenic 45.0%
CATTTCTGCTTTGCAAGGGA+AGG - chr5_4:17957956-17957975 Msa0841570:intron 45.0%
!! TCGCCATGTAGCTATTTCTC+AGG - chr5_4:17958210-17958229 Msa0841570:intron 45.0%
!! CGCCATGTAGCTATTTCTCA+GGG - chr5_4:17958211-17958230 Msa0841570:intron 45.0%
CTCGCCATGTGAGATATCAT+TGG - chr5_4:17958240-17958259 Msa0841570:intron 45.0%
!! AGAAGGTGGTGGACGTTTAT+TGG + chr5_4:17958630-17958649 None:intergenic 45.0%
! GATGCAGCAGCATTTTCCAA+AGG + chr5_4:17958906-17958925 None:intergenic 45.0%
GGCGTCAATTGAGATAGAAG+TGG - chr5_4:17958938-17958957 Msa0841570:intron 45.0%
GGCCTGAATTTCATATCCGA+AGG - chr5_4:17959070-17959089 Msa0841570:intron 45.0%
GCAGAGCTTCTTAGGGATAT+AGG - chr5_4:17959122-17959141 Msa0841570:intron 45.0%
AGCTTCTTAGGGATATAGGG+TGG - chr5_4:17959126-17959145 Msa0841570:intron 45.0%
AGGCAGATTCAAAGGGAGAA+CGG + chr5_4:17959350-17959369 None:intergenic 45.0%
AGAGGAGAGGCAGATTCAAA+GGG + chr5_4:17959357-17959376 None:intergenic 45.0%
!! GCTCTTTGAGGGTTTTGCTT+AGG - chr5_4:17959492-17959511 Msa0841570:intron 45.0%
TCTGCCTGCCTTAATCCTAT+TGG - chr5_4:17959545-17959564 Msa0841570:intron 45.0%
ACCACCAATAGGATTAAGGC+AGG + chr5_4:17959552-17959571 None:intergenic 45.0%
CCGCATGAAATACCACCAAT+AGG + chr5_4:17959563-17959582 None:intergenic 45.0%
CAACTACATGACACACTTGC+AGG + chr5_4:17959719-17959738 None:intergenic 45.0%
TGTGACTAATACGGCTATGG+TGG - chr5_4:17959754-17959773 Msa0841570:intron 45.0%
GGCTATGGTGGTAAGAATGT+GGG - chr5_4:17959766-17959785 Msa0841570:intron 45.0%
GTGGATGCATCATAAGGAGT+TGG - chr5_4:17959793-17959812 Msa0841570:intron 45.0%
ATGCATCATAAGGAGTTGGG+AGG - chr5_4:17959797-17959816 Msa0841570:intron 45.0%
TGCATCATAAGGAGTTGGGA+GGG - chr5_4:17959798-17959817 Msa0841570:intron 45.0%
GTCTGCAATATGCCAGTGAA+AGG - chr5_4:17959820-17959839 Msa0841570:intron 45.0%
ACTGATGCTTTCCCTTTCAC+TGG + chr5_4:17959835-17959854 None:intergenic 45.0%
GAGGCTTATGGAAAAGAGTG+GGG - chr5_4:17959872-17959891 Msa0841570:intron 45.0%
ATGGAAAAGAGTGGGGACAT+AGG - chr5_4:17959879-17959898 Msa0841570:intron 45.0%
TGGAAAAGAGTGGGGACATA+GGG - chr5_4:17959880-17959899 Msa0841570:intron 45.0%
GAGAGGATAAGGTGTGTGTA+TGG - chr5_4:17960066-17960085 Msa0841570:intron 45.0%
CTACTAAAGCGCGCTATTTG+TGG - chr5_4:17960297-17960316 Msa0841570:intron 45.0%
AGCTTCAACAACACACTTGG+GGG + chr5_4:17960545-17960564 None:intergenic 45.0%
GAGCTTCAACAACACACTTG+GGG + chr5_4:17960546-17960565 None:intergenic 45.0%
GGAGCTTCAACAACACACTT+GGG + chr5_4:17960547-17960566 None:intergenic 45.0%
TCTGTTACCTATCCCTTTGC+AGG - chr5_4:17960688-17960707 Msa0841570:CDS 45.0%
AGTAACTCCTGCAAAGGGAT+AGG + chr5_4:17960698-17960717 None:intergenic 45.0%
ATCCCTTTGCAGGAGTTACT+TGG - chr5_4:17960698-17960717 Msa0841570:CDS 45.0%
GTCCAAGTAACTCCTGCAAA+GGG + chr5_4:17960703-17960722 None:intergenic 45.0%
ACTTCTTCACTTCCAGCTTC+TGG + chr5_4:17960809-17960828 None:intergenic 45.0%
GAGTAGAAACCTCTACAAGC+TGG - chr5_4:17960914-17960933 Msa0841570:CDS 45.0%
GGTAAAACTCCAGCTTGTAG+AGG + chr5_4:17960926-17960945 None:intergenic 45.0%
!! AAAAATGAATATAAAAATAT+TGG - chr5_4:17957424-17957443 Msa0841570:intron 5.0%
GCCTTGGTCTCTTTCTAAGC+CGG - chr5_4:17955799-17955818 Msa0841570:CDS 50.0%
TCCGGCTTAGAAAGAGACCA+AGG + chr5_4:17955803-17955822 None:intergenic 50.0%
ACCCTTATGACTCCCTCTCA+GGG - chr5_4:17956465-17956484 Msa0841570:intron 50.0%
TCCCTGAGAGGGAGTCATAA+GGG + chr5_4:17956469-17956488 None:intergenic 50.0%
GATTACACACCTCCCTGAGA+GGG + chr5_4:17956480-17956499 None:intergenic 50.0%
GGGCACATGCGTACATGTAT+TGG + chr5_4:17956575-17956594 None:intergenic 50.0%
!! GAAGTTTTGTCACTCTGCGG+TGG - chr5_4:17957252-17957271 Msa0841570:intron 50.0%
GAAATGTTAACCACTGCCCC+CGG - chr5_4:17957490-17957509 Msa0841570:intron 50.0%
AAATGTTAACCACTGCCCCC+GGG - chr5_4:17957491-17957510 Msa0841570:intron 50.0%
GGATTCCTTAACCAGTTCCC+CGG - chr5_4:17957619-17957638 Msa0841570:intron 50.0%
GATTCCTTAACCAGTTCCCC+GGG - chr5_4:17957620-17957639 Msa0841570:intron 50.0%
ATTCCTTAACCAGTTCCCCG+GGG - chr5_4:17957621-17957640 Msa0841570:intron 50.0%
TCTATGCATCCAACCTTGCG+TGG - chr5_4:17957787-17957806 Msa0841570:intron 50.0%
TCTTGCTTTCCACGCAAGGT+TGG + chr5_4:17957799-17957818 None:intergenic 50.0%
AAGACAACCCTGGCTGAAAC+TGG + chr5_4:17957864-17957883 None:intergenic 50.0%
AGGGGTTTGAAAGACAACCC+TGG + chr5_4:17957874-17957893 None:intergenic 50.0%
AGGGTTGTCTTTCAAACCCC+TGG - chr5_4:17957873-17957892 Msa0841570:intron 50.0%
GTTGTCTTTCAAACCCCTGG+TGG - chr5_4:17957876-17957895 Msa0841570:intron 50.0%
! GCTGCCATTTCTGCTTTGCA+AGG - chr5_4:17957951-17957970 Msa0841570:intron 50.0%
CTCAGCTATGTAGGTGCCTT+TGG - chr5_4:17958887-17958906 Msa0841570:intron 50.0%
TGCTGCATCACAATGACGCT+AGG - chr5_4:17958917-17958936 Msa0841570:intron 50.0%
ATTCAGGGGCAGAGCTTCTT+AGG - chr5_4:17959114-17959133 Msa0841570:intron 50.0%
TTCAGGGGCAGAGCTTCTTA+GGG - chr5_4:17959115-17959134 Msa0841570:intron 50.0%
CAATGCAGCGCATACGCAAA+GGG + chr5_4:17959276-17959295 None:intergenic 50.0%
ACAATGCAGCGCATACGCAA+AGG + chr5_4:17959277-17959296 None:intergenic 50.0%
CAGAGGAGAGGCAGATTCAA+AGG + chr5_4:17959358-17959377 None:intergenic 50.0%
GCCTGCCTTAATCCTATTGG+TGG - chr5_4:17959548-17959567 Msa0841570:intron 50.0%
CGGCTATGGTGGTAAGAATG+TGG - chr5_4:17959765-17959784 Msa0841570:intron 50.0%
TGGTGGTAAGAATGTGGGCT+TGG - chr5_4:17959771-17959790 Msa0841570:intron 50.0%
TGGTAAGAATGTGGGCTTGG+TGG - chr5_4:17959774-17959793 Msa0841570:intron 50.0%
!! GGCTTGGTGGATGCATCATA+AGG - chr5_4:17959787-17959806 Msa0841570:intron 50.0%
AAAGAGTGGGGACATAGGGT+TGG - chr5_4:17959884-17959903 Msa0841570:intron 50.0%
TAGCACTACGGTGAACAAGG+AGG - chr5_4:17959993-17960012 Msa0841570:intron 50.0%
CGGAGCTTCAACAACACACT+TGG + chr5_4:17960548-17960567 None:intergenic 50.0%
CGTCCAAGTAACTCCTGCAA+AGG + chr5_4:17960704-17960723 None:intergenic 50.0%
! GAGTCATAAGGGTGGCTTGG+TGG + chr5_4:17956458-17956477 None:intergenic 55.0%
AGGGAGTCATAAGGGTGGCT+TGG + chr5_4:17956461-17956480 None:intergenic 55.0%
CTGAGAGGGAGTCATAAGGG+TGG + chr5_4:17956466-17956485 None:intergenic 55.0%
CACCCTTATGACTCCCTCTC+AGG - chr5_4:17956464-17956483 Msa0841570:intron 55.0%
CTCCCTGAGAGGGAGTCATA+AGG + chr5_4:17956470-17956489 None:intergenic 55.0%
CTTATGACTCCCTCTCAGGG+AGG - chr5_4:17956468-17956487 Msa0841570:intron 55.0%
GGATTACACACCTCCCTGAG+AGG + chr5_4:17956481-17956500 None:intergenic 55.0%
CATGGCACTTCCCCTTCTTG+AGG - chr5_4:17956520-17956539 Msa0841570:intron 55.0%
ACTCTGCGGTGGCATGTAGT+AGG - chr5_4:17957263-17957282 Msa0841570:intron 55.0%
AATGTTAACCACTGCCCCCG+GGG - chr5_4:17957492-17957511 Msa0841570:intron 55.0%
TGCTTCCTTAACCAGTGCCC+CGG + chr5_4:17957512-17957531 None:intergenic 55.0%
TTCCTTAACCAGTTCCCCGG+GGG - chr5_4:17957622-17957641 Msa0841570:intron 55.0%
ACCCAGCAGATTTCCCACCA+GGG + chr5_4:17957893-17957912 None:intergenic 55.0%
TACCCAGCAGATTTCCCACC+AGG + chr5_4:17957894-17957913 None:intergenic 55.0%
GGTGGGAAATCTGCTGGGTA+TGG - chr5_4:17957894-17957913 Msa0841570:intron 55.0%
! TAGACGGAGGGTGCAGTACT+GGG + chr5_4:17959218-17959237 None:intergenic 55.0%
AAACGCAGTGGGTAGACGGA+GGG + chr5_4:17959230-17959249 None:intergenic 55.0%
ACGCAAACGCAGTGGGTAGA+CGG + chr5_4:17959234-17959253 None:intergenic 55.0%
GGATTCAGGAGAGGAGGCTC+AGG - chr5_4:17956104-17956123 Msa0841570:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG + chr5_4:17957509-17957528 None:intergenic 60.0%
CTTCCTTAACCAGTGCCCCG+GGG + chr5_4:17957510-17957529 None:intergenic 60.0%
GCTTCCTTAACCAGTGCCCC+GGG + chr5_4:17957511-17957530 None:intergenic 60.0%
TCTTGTTAACCGGTGCCCCC+GGG + chr5_4:17957640-17957659 None:intergenic 60.0%
! GTCTTGTTAACCGGTGCCCC+CGG + chr5_4:17957641-17957660 None:intergenic 60.0%
TTAGGAGTGGGAGCTGGAGG+AGG + chr5_4:17957750-17957769 None:intergenic 60.0%
TCCTCCAGCTCCCACTCCTA+AGG - chr5_4:17957749-17957768 Msa0841570:intron 60.0%
TCCTTAGGAGTGGGAGCTGG+AGG + chr5_4:17957753-17957772 None:intergenic 60.0%
GCTTCCTTAGGAGTGGGAGC+TGG + chr5_4:17957756-17957775 None:intergenic 60.0%
ACCCCTGGTGGGAAATCTGC+TGG - chr5_4:17957888-17957907 Msa0841570:intron 60.0%
CCCAGCAGATTTCCCACCAG+GGG + chr5_4:17957892-17957911 None:intergenic 60.0%
CCCCTGGTGGGAAATCTGCT+GGG - chr5_4:17957889-17957908 Msa0841570:intron 60.0%
! AGACGGAGGGTGCAGTACTG+GGG + chr5_4:17959217-17959236 None:intergenic 60.0%
! GTAGACGGAGGGTGCAGTAC+TGG + chr5_4:17959219-17959238 None:intergenic 60.0%
CAAACGCAGTGGGTAGACGG+AGG + chr5_4:17959231-17959250 None:intergenic 60.0%
CGACAGGACGCAAACGCAGT+GGG + chr5_4:17959241-17959260 None:intergenic 60.0%
ACGACAGGACGCAAACGCAG+TGG + chr5_4:17959242-17959261 None:intergenic 60.0%
GCATACGCAAAGGGTCAGCG+TGG + chr5_4:17959267-17959286 None:intergenic 60.0%
ACGAAGCACACGCAGAGGAG+AGG + chr5_4:17959370-17959389 None:intergenic 60.0%
TCTCCTCTGCGTGTGCTTCG+TGG - chr5_4:17959369-17959388 Msa0841570:intron 60.0%
GAACCACGAAGCACACGCAG+AGG + chr5_4:17959375-17959394 None:intergenic 60.0%
GACGACACGCAACCAGAAGC+TGG - chr5_4:17960794-17960813 Msa0841570:CDS 60.0%
TGCCCCCGGGGAACTGGTTA+AGG + chr5_4:17957627-17957646 None:intergenic 65.0%
CTTGTTAACCGGTGCCCCCG+GGG + chr5_4:17957639-17957658 None:intergenic 65.0%
AGGGTCAGCGTGGTCACGAC+AGG + chr5_4:17959257-17959276 None:intergenic 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr5_4:17957504-17957523 Msa0841570:intron 70.0%
! AACCAGTTCCCCGGGGGCAC+CGG - chr5_4:17957628-17957647 Msa0841570:intron 70.0%
GGAGCTGGAGGAGGTGGAGG+AGG + chr5_4:17957741-17957760 None:intergenic 70.0%
GTGGGAGCTGGAGGAGGTGG+AGG + chr5_4:17957744-17957763 None:intergenic 70.0%
GGAGTGGGAGCTGGAGGAGG+TGG + chr5_4:17957747-17957766 None:intergenic 70.0%
AACCACTGCCCCCGGGGCAC+TGG - chr5_4:17957498-17957517 Msa0841570:intron 75.0%
AACCAGTGCCCCGGGGGCAG+TGG + chr5_4:17957503-17957522 None:intergenic 75.0%
AACCGGTGCCCCCGGGGAAC+TGG + chr5_4:17957633-17957652 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 17955397 17961140 17955397 ID=Msa0841570;Name=Msa0841570
chr5_4 mRNA 17955397 17961140 17955397 ID=Msa0841570-mRNA-1;Parent=Msa0841570;Name=Msa0841570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=97|0.66|0.75|1|0.66|1|4|272|294
chr5_4 exon 17955397 17955827 17955397 ID=Msa0841570-mRNA-1:exon:7590;Parent=Msa0841570-mRNA-1
chr5_4 exon 17958560 17958811 17958560 ID=Msa0841570-mRNA-1:exon:7589;Parent=Msa0841570-mRNA-1
chr5_4 exon 17960385 17960483 17960385 ID=Msa0841570-mRNA-1:exon:7588;Parent=Msa0841570-mRNA-1
chr5_4 exon 17960669 17961140 17960669 ID=Msa0841570-mRNA-1:exon:7587;Parent=Msa0841570-mRNA-1
chr5_4 five_prime_UTR 17961044 17961140 17961044 ID=Msa0841570-mRNA-1:five_prime_utr;Parent=Msa0841570-mRNA-1
chr5_4 CDS 17960669 17961043 17960669 ID=Msa0841570-mRNA-1:cds;Parent=Msa0841570-mRNA-1
chr5_4 CDS 17960385 17960483 17960385 ID=Msa0841570-mRNA-1:cds;Parent=Msa0841570-mRNA-1
chr5_4 CDS 17958560 17958811 17958560 ID=Msa0841570-mRNA-1:cds;Parent=Msa0841570-mRNA-1
chr5_4 CDS 17955669 17955827 17955669 ID=Msa0841570-mRNA-1:cds;Parent=Msa0841570-mRNA-1
chr5_4 three_prime_UTR 17955397 17955668 17955397 ID=Msa0841570-mRNA-1:three_prime_utr;Parent=Msa0841570-mRNA-1
Gene Sequence

>Msa0841570

ATGGCAACGTTAGAATCAACCATAACTGTATTCACACATCAACGTTTCTCAAATAATAACTACCATTTCTTATCAAAATCACCAGATTCCATAAAACTCCATGCTTCAACTTCAATCCCTTCTTCTTCTTTTTCCATTTTCTCTCACAATATCCACAAACTTCACTTTTCTTCTTCCTCTTCCAAATCCAAAACACTCTGCTACGCTTTACAAGAGGTAACAGAAGCAGCAACAACAACTGAAGAAGATGAAGCAAAAACAGAGACATTGAACATCGTTAAGAAGAACCTCGTTGTCTTTAACTTGCCTTGGTCTCTTTCTAAGCCGGATATCAAGGATCTCTTCGCTCAATGTGGAACTGTAATTGACGTTGAGATTGTAAAGAGCAAAGATGGGAAGGGAAAAGGTTATACATTTGTTACTATGGATTCAGGAGAGGAGGCTCAGGCTGCTGTCGATAAATTTAATGCTGCTGGATTTAAGAAACCTCCTCCACCTCCTCCAGCTCCCACTCCTAAGGAAGCACGTTATGTAATCTATGCATCCAACCTTGCGTGGAAAGCAAGATCTACACATCTCAGAGACATCTTCACTGAGAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTCAAACCCCTGGTGGGAAATCTGCTGGGTATGGATTTGTTTCTTATCATACGGAGGAGGAAGCAGAAGCTGCCATTTCTGCTTTGCAAGGGAAGGAGTTACTTGGACGACCACTTCTCGTAAAAATAAGTGAAAAAAAAGTTAAAGAAGCTGGAAGTGAAGTAGTTGAAGAGAAAGTTGACGACACGCAACCAGAAGCTGGAAGTGAAGAAGTTGAAGAGAAAGTTGATGACGCGCAACCAGATGAGTCATAA

Protein sequence

>Msa0841570

MATLESTITVFTHQRFSNNNYHFLSKSPDSIKLHASTSIPSSSFSIFSHNIHKLHFSSSSSKSKTLCYALQEVTEAATTTEEDEAKTETLNIVKKNLVVFNLPWSLSKPDIKDLFAQCGTVIDVEIVKSKDGKGKGYTFVTMDSGEEAQAAVDKFNAAGFKKPPPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQTPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISEKKVKEAGSEVVEEKVDDTQPEAGSEEVEEKVDDAQPDES*