AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0329050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0329050 MtrunA17_Chr2g0310601 99.165 479 4 0 1 479 1 479 0.0 936
Msa0329050 MtrunA17_Chr2g0310611 87.841 403 48 1 73 474 89 491 0.0 700
Msa0329050 MtrunA17_Chr2g0310621 85.427 398 58 0 77 474 4 401 0.0 684
Msa0329050 MtrunA17_Chr6g0457691 30.198 404 272 5 78 479 142 537 2.13e-48 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0329050 AT1G56190.1 87.244 439 55 1 42 479 40 478 0.0 774
Msa0329050 AT3G12780.1 82.231 484 78 4 1 479 1 481 0.0 761
Msa0329050 AT1G56190.2 89.877 405 41 0 75 479 1 405 0.0 736
Msa0329050 AT1G79550.1 85.930 398 56 0 77 474 4 401 0.0 695
Msa0329050 AT1G79550.2 85.930 398 56 0 77 474 4 401 0.0 695

Find 198 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTATTTGAACTTATTTAT+TGG 0.169860 2_4:-42137328 Msa0329050:three_prime_UTR
AAGAGGTGCCAAGCTGTATT+TGG 0.198091 2_4:+42139772 None:intergenic
AGAACGATTGGGTGTGGTTT+GGG 0.198355 2_4:+42141587 None:intergenic
TGGGTGTGGTTTGGGGATTT+TGG 0.203943 2_4:+42141595 None:intergenic
GGGGAGGAGTGAGATGGTTG+TGG 0.281250 2_4:+42141429 None:intergenic
CGCTGCAGCTGACCCTTTGT+TGG 0.296291 2_4:-42141311 Msa0329050:CDS
TTGAGTGGGGCGGAGTTAAA+AGG 0.296770 2_4:-42141202 Msa0329050:CDS
AAGAACGATTGGGTGTGGTT+TGG 0.299575 2_4:+42141586 None:intergenic
TCCAAGGTCTCATCTAAAAT+TGG 0.303839 2_4:-42138755 Msa0329050:CDS
GGGAGGAGTGAGATGGTTGT+GGG 0.311165 2_4:+42141430 None:intergenic
GTCCATTCCATATGATGGTT+TGG 0.319459 2_4:+42138302 None:intergenic
GGATTATTGACAGGTTATTA+AGG 0.325099 2_4:-42139620 Msa0329050:intron
GGAATATTTATTTGAATTGA+TGG 0.325316 2_4:+42137405 None:intergenic
CACCGGTGGTGGTGCAAGTT+TGG 0.328292 2_4:-42137667 Msa0329050:CDS
ATTAAATATCTAATTCAAAA+TGG 0.335122 2_4:-42141085 Msa0329050:CDS
TGGGGTGGTGGATGGGGAAG+AGG 0.341920 2_4:+42141396 None:intergenic
TAGGAACTTGACTACCTTGT+TGG 0.343922 2_4:-42138824 Msa0329050:CDS
AGGAACTTGACTACCTTGTT+GGG 0.344781 2_4:-42138823 Msa0329050:CDS
TCCAATGAGTTCGGAGAGCC+TGG 0.357814 2_4:+42139745 None:intergenic
TGAATTAGATATTTAATAGT+TGG 0.368159 2_4:+42141091 None:intergenic
TCCATTCCATATGATGGTTT+GGG 0.378519 2_4:+42138303 None:intergenic
AGTCATTCTTTCTAGCCATT+TGG 0.381908 2_4:-42141056 Msa0329050:intron
TGACCCTTTGTTGGCGGTGC+AGG 0.383423 2_4:-42141302 Msa0329050:CDS
TATTTGGGAGTGACACCCTT+TGG 0.399527 2_4:+42139788 None:intergenic
TATTTGAAGCCATCTGTTGC+TGG 0.401801 2_4:-42139385 Msa0329050:CDS
AGGAGAGTTGGATGCGGGAG+GGG 0.411082 2_4:+42141371 None:intergenic
TCCAATCCCATCCAACCATC+AGG 0.411142 2_4:+42138373 None:intergenic
CATTGGTCCATTCCATATGA+TGG 0.411281 2_4:+42138297 None:intergenic
GGAGGAGTGAGATGGTTGTG+GGG 0.411898 2_4:+42141431 None:intergenic
TGAGGAGAGTTGGATGCGGG+AGG 0.417320 2_4:+42141369 None:intergenic
TGCTATCCCTGATGGTTGGA+TGG 0.424383 2_4:-42138380 Msa0329050:CDS
GTGAGGACAGTGAGCGGGAG+AGG 0.428772 2_4:-42141268 Msa0329050:CDS
TTGGAAGGCAAAGAGCTTCC+CGG 0.431964 2_4:-42137639 Msa0329050:CDS
AGAGGTGCCAAGCTGTATTT+GGG 0.433038 2_4:+42139773 None:intergenic
GCCCGCCCACTCCGCCGACT+TGG 0.433426 2_4:-42141337 Msa0329050:CDS
TGCAGCTGACCCTTTGTTGG+CGG 0.434584 2_4:-42141308 Msa0329050:CDS
GAGGAGTGAGATGGTTGTGG+GGG 0.435325 2_4:+42141432 None:intergenic
GGAGAGTTGGATGCGGGAGG+GGG 0.435773 2_4:+42141372 None:intergenic
AAGGCCATTTGCGGCAATTG+TGG 0.436409 2_4:-42138783 Msa0329050:CDS
GTGAGCGGGAGAGGAGTAAG+AGG 0.437407 2_4:-42141259 Msa0329050:CDS
CCACCCACAATTGCCGCAAA+TGG 0.440518 2_4:+42138779 None:intergenic
TTCTGGACCAATACTGTCTT+CGG 0.442920 2_4:+42139597 None:intergenic
GGGCAGTATCAAGCCCAAAA+AGG 0.443174 2_4:-42138802 Msa0329050:CDS
GACTCCCTCTGTTGATGCAT+GGG 0.445361 2_4:+42139414 None:intergenic
CGAAGCCAAGTCGGCGGAGT+GGG 0.446914 2_4:+42141332 None:intergenic
ATGCATTCGGTACTGCTCAC+AGG 0.450363 2_4:-42139438 Msa0329050:CDS
TGGTGCAAGTTTGGAGCTAT+TGG 0.450844 2_4:-42137658 Msa0329050:CDS
AGCCAAGTCGGCGGAGTGGG+CGG 0.455059 2_4:+42141335 None:intergenic
TTAGTCTATTGCAAAGAAGT+TGG 0.455163 2_4:-42137790 Msa0329050:intron
AAAGTTGACATCCTTCTTCT+CGG 0.456222 2_4:-42138710 Msa0329050:CDS
GCCAAGTCGGCGGAGTGGGC+GGG 0.460638 2_4:+42141336 None:intergenic
GAATTGATGGCTTTCAGCCT+AGG 0.462253 2_4:+42137418 None:intergenic
CAAACCTGGCTGTTTGCATC+AGG 0.463412 2_4:+42138521 None:intergenic
CCCAGGCTCTCCGAACTCAT+TGG 0.464625 2_4:-42139746 Msa0329050:CDS
AAGAGGATTTAGTGGTGGGG+AGG 0.466020 2_4:+42141413 None:intergenic
CCCTGATGGTTGGATGGGAT+TGG 0.470340 2_4:-42138374 Msa0329050:CDS
AGGCCATTTGCGGCAATTGT+GGG 0.473545 2_4:-42138782 Msa0329050:CDS
GCTACACCAGTCGCCGTGTA+AGG 0.475076 2_4:-42137597 Msa0329050:exon
TAAAACATTCAATGAAGCAT+TGG 0.477391 2_4:-42138332 Msa0329050:CDS
CCTTGTAGAGGAAGATAAGT+TGG 0.479283 2_4:-42138633 Msa0329050:CDS
CGCCGAGGAATGAGGAGAGT+TGG 0.479460 2_4:+42141359 None:intergenic
AGAAGTAGAACTCCTCCGTC+TGG 0.481985 2_4:+42139550 None:intergenic
TGGGGAAGAGGATTTAGTGG+TGG 0.482996 2_4:+42141408 None:intergenic
ATACCACCCAAACCATCATA+TGG 0.484602 2_4:-42138309 Msa0329050:CDS
TGCTCCTGATGCAAACAGCC+AGG 0.489017 2_4:-42138525 Msa0329050:intron
GCTTGGCACCTCTTGTTCCC+AGG 0.490709 2_4:-42139763 Msa0329050:CDS
GAACGATTGGGTGTGGTTTG+GGG 0.490748 2_4:+42141588 None:intergenic
CCAACTTATCTTCCTCTACA+AGG 0.492018 2_4:+42138633 None:intergenic
TCATTCCTCCACCGAGAAGA+AGG 0.493393 2_4:+42138699 None:intergenic
TACCTCAATTCCAATGAGTT+CGG 0.493430 2_4:+42139736 None:intergenic
AGGAGCAAAGGAAGAACGAT+TGG 0.495498 2_4:+42141575 None:intergenic
AAACTTATGGCAGCAACTGA+TGG 0.497654 2_4:+42137384 None:intergenic
AGAGTGTTGGAGATTTGAGT+GGG 0.500144 2_4:-42141216 Msa0329050:CDS
GAGGAGAGTTGGATGCGGGA+GGG 0.500293 2_4:+42141370 None:intergenic
GGTTGGATGGGATTGGACAT+TGG 0.502884 2_4:-42138367 Msa0329050:CDS
TCATCGAGGGCGAGAACACC+GGG 0.502939 2_4:+42137621 None:intergenic
CACCACCACCGGTGGATATG+TGG 0.503719 2_4:+42137676 None:intergenic
GACATCCTTCTTCTCGGTGG+AGG 0.504587 2_4:-42138704 Msa0329050:CDS
TGACTCCCTCTGTTGATGCA+TGG 0.505501 2_4:+42139413 None:intergenic
TGGGCGGGCGCCGAGGAATG+AGG 0.508092 2_4:+42141351 None:intergenic
AAATTGCCTTACACGGCGAC+TGG 0.508972 2_4:+42137591 None:intergenic
TTGGCCGACCTAAGTGGAAA+GGG 0.511148 2_4:-42137771 Msa0329050:CDS
ATCATATGGAATGGACCAAT+GGG 0.515486 2_4:-42138295 Msa0329050:CDS
CTCCGAACTCATTGGAATTG+AGG 0.516505 2_4:-42139738 Msa0329050:intron
GGCGGTGCAGGTGGCGTCGA+AGG 0.517503 2_4:-42141290 Msa0329050:CDS
GGCAATTGTGGGTGGTTCCA+AGG 0.518184 2_4:-42138771 Msa0329050:CDS
AGGAGATTCTGTTGCAGCTG+TGG 0.521058 2_4:-42137727 Msa0329050:CDS
TGAATGAATGAAATGAAGGT+GGG 0.524513 2_4:+42141523 None:intergenic
GGGGAAGAGGATTTAGTGGT+GGG 0.524758 2_4:+42141409 None:intergenic
GAGTGACACACCCTTTGCCT+TGG 0.526454 2_4:+42138583 None:intergenic
TTCATCGAGGGCGAGAACAC+CGG 0.526737 2_4:+42137620 None:intergenic
CTCCAAACTTGCACCACCAC+CGG 0.527384 2_4:+42137665 None:intergenic
CGAAGGTGAGGACAGTGAGC+GGG 0.527520 2_4:-42141273 Msa0329050:CDS
CCCTTTGTTGGCGGTGCAGG+TGG 0.527923 2_4:-42141299 Msa0329050:CDS
ATTAAGGCCGAAGACAGTAT+TGG 0.529102 2_4:-42139604 Msa0329050:CDS
GGCGGAGTGGGCGGGCGCCG+AGG 0.530211 2_4:+42141344 None:intergenic
ATCCAACTCTCCTCATTCCT+CGG 0.531300 2_4:-42141361 Msa0329050:CDS
CCAGCATCTGCTATCCCTGA+TGG 0.534495 2_4:-42138388 Msa0329050:CDS
TTGTGAGAACACTGAAACCG+AGG 0.535903 2_4:+42137545 None:intergenic
GCCACCTGCACCGCCAACAA+AGG 0.536009 2_4:+42141298 None:intergenic
CATCTGCTATCCCTGATGGT+TGG 0.536047 2_4:-42138384 Msa0329050:CDS
GCTATCCCTGATGGTTGGAT+GGG 0.536600 2_4:-42138379 Msa0329050:CDS
CCACCTGCACCGCCAACAAA+GGG 0.536732 2_4:+42141299 None:intergenic
TCTGCGATCACCACATCACT+TGG 0.538211 2_4:+42138554 None:intergenic
TGCAGGTGGCGTCGAAGGTG+AGG 0.538726 2_4:-42141285 Msa0329050:CDS
AGAATATTACTGATGATACT+AGG 0.543997 2_4:-42141129 Msa0329050:CDS
GAGTTTGACAAGTTTGCTGT+TGG 0.546134 2_4:-42138265 Msa0329050:CDS
GTAGAACTCCTCCGTCTGGA+AGG 0.546631 2_4:+42139554 None:intergenic
ACCCAAACCATCATATGGAA+TGG 0.549209 2_4:-42138304 Msa0329050:CDS
TGTTGGAGATTTGAGTGGGG+CGG 0.549427 2_4:-42141212 Msa0329050:CDS
CCATTTGCGGCAATTGTGGG+TGG 0.550750 2_4:-42138779 Msa0329050:CDS
CATCATATGGAATGGACCAA+TGG 0.552065 2_4:-42138296 Msa0329050:CDS
AAGAAGTTGGCCGACCTAAG+TGG 0.552641 2_4:-42137777 Msa0329050:CDS
GTTGCAGCTGTGGAGAAAGT+AGG 0.554074 2_4:-42137717 Msa0329050:CDS
AAGAGTGTTGGAGATTTGAG+TGG 0.554263 2_4:-42141217 Msa0329050:CDS
TTCTACTTCTTGAAAATGTG+AGG 0.555785 2_4:-42139537 Msa0329050:CDS
TGGTCCAGAAGTAGAAAAGT+TGG 0.556192 2_4:-42139584 Msa0329050:CDS
TGCATTCGGTACTGCTCACA+GGG 0.557008 2_4:-42139437 Msa0329050:CDS
ATTGCAAAAGCCAAGGCAAA+GGG 0.558692 2_4:-42138593 Msa0329050:CDS
ACTCTTGCTGCCAAGTGATG+TGG 0.558831 2_4:-42138564 Msa0329050:CDS
GCGAAGCCAAGTCGGCGGAG+TGG 0.559227 2_4:+42141331 None:intergenic
AATTGCAAAAGCCAAGGCAA+AGG 0.559292 2_4:-42138594 Msa0329050:CDS
AAGGCACAAGGTCTTGCAGT+TGG 0.559506 2_4:-42138662 Msa0329050:CDS
GAATGAGGAGAGTTGGATGC+GGG 0.560217 2_4:+42141366 None:intergenic
AAGCTGAAAATTGCCTTACA+CGG 0.560445 2_4:+42137584 None:intergenic
AAAGGAAGAACGATTGGGTG+TGG 0.561219 2_4:+42141581 None:intergenic
AGCCACATATCCACCGGTGG+TGG 0.561258 2_4:-42137678 Msa0329050:CDS
TCAAACTCAAACACTCCCAT+TGG 0.562382 2_4:+42138280 None:intergenic
CAAGTTTGCTGTTGGAACAG+AGG 0.563230 2_4:-42138257 Msa0329050:intron
TCGATGGCGAAGAAGAGTGT+TGG 0.565955 2_4:-42141229 Msa0329050:CDS
CGGGAGAGGAGTAAGAGGAG+TGG 0.566239 2_4:-42141254 Msa0329050:CDS
AGTGGTGGGGAGGAGTGAGA+TGG 0.566517 2_4:+42141423 None:intergenic
GGATGGGGAAGAGGATTTAG+TGG 0.567768 2_4:+42141405 None:intergenic
GATGTGGACGTGAGGAGCAA+AGG 0.568129 2_4:+42141563 None:intergenic
TCGAAGGTGAGGACAGTGAG+CGG 0.571233 2_4:-42141274 Msa0329050:CDS
GAACTGAATGAATGAAATGA+AGG 0.577056 2_4:+42141519 None:intergenic
ATTCCATATGATGGTTTGGG+TGG 0.577654 2_4:+42138306 None:intergenic
AAATTTGCAGGGAAGGCCAA+AGG 0.578585 2_4:-42139804 Msa0329050:intron
GGAGCAAAGGAAGAACGATT+GGG 0.583087 2_4:+42141576 None:intergenic
AGTAAGAGGAGTGGTGTCGA+TGG 0.583231 2_4:-42141245 Msa0329050:CDS
AAATTTACACTAACAAACTC+GGG 0.584120 2_4:+42137491 None:intergenic
CTGTATGTGAATGATGCATT+CGG 0.584611 2_4:-42139451 Msa0329050:CDS
TCCAGAAGTAGAAAAGTTGG+TGG 0.584684 2_4:-42139581 Msa0329050:CDS
CAGCTGCAGCGAAGCCAAGT+CGG 0.585809 2_4:+42141323 None:intergenic
GTTGGCCGACCTAAGTGGAA+AGG 0.587208 2_4:-42137772 Msa0329050:CDS
GGGAAGAGGATTTAGTGGTG+GGG 0.587400 2_4:+42141410 None:intergenic
AAAATTTACACTAACAAACT+CGG 0.588917 2_4:+42137490 None:intergenic
CACATACAGATCTGCGAGTG+CGG 0.592722 2_4:+42139465 None:intergenic
CTGAATGAATGAAATGAAGG+TGG 0.592855 2_4:+42141522 None:intergenic
GCAAGTTTGGAGCTATTGGA+AGG 0.593757 2_4:-42137654 Msa0329050:CDS
CCATCAGGGATAGCAGATGC+TGG 0.593790 2_4:+42138388 None:intergenic
GTCATGAGCCACATATCCAC+CGG 0.595301 2_4:-42137684 Msa0329050:CDS
GGGGTGACAACTATTATTGG+AGG 0.595480 2_4:-42137750 Msa0329050:CDS
AATTTGCAGGGAAGGCCAAA+GGG 0.596112 2_4:-42139803 Msa0329050:intron
GAATGAATGAAATGAAGGTG+GGG 0.598540 2_4:+42141524 None:intergenic
GGAATGAGGAGAGTTGGATG+CGG 0.598775 2_4:+42141365 None:intergenic
TGAATGAAATGAAGGTGGGG+GGG 0.600182 2_4:+42141527 None:intergenic
GGAACTTGACTACCTTGTTG+GGG 0.602846 2_4:-42138822 Msa0329050:CDS
AATGAATGAAATGAAGGTGG+GGG 0.603486 2_4:+42141525 None:intergenic
TAGAACTCCTCCGTCTGGAA+GGG 0.608774 2_4:+42139555 None:intergenic
ATATTCTGATTATCATCAAG+AGG 0.609805 2_4:+42141145 None:intergenic
GTGACAACTATTATTGGAGG+AGG 0.610339 2_4:-42137747 Msa0329050:CDS
AAAAGAAAACCAGCAACAGA+TGG 0.611850 2_4:+42139376 None:intergenic
TCGGAGAGCCTGGGAACAAG+AGG 0.613075 2_4:+42139755 None:intergenic
GAGTGTTGGAGATTTGAGTG+GGG 0.613290 2_4:-42141215 Msa0329050:CDS
TGTCTCTTATCGTTGAGATG+AGG 0.614873 2_4:+42141619 None:intergenic
GACTGGTGTAGCTTCATCGA+GGG 0.615596 2_4:+42137608 None:intergenic
AGTTGGTTCATCCCTTGTAG+AGG 0.617364 2_4:-42138645 Msa0329050:CDS
AACACTAATTGCAAAAGCCA+AGG 0.618211 2_4:-42138600 Msa0329050:CDS
GTGGCTTCCCTTCCAGACGG+AGG 0.619373 2_4:-42139562 Msa0329050:CDS
GGATATGTGGCTCATGACAT+CGG 0.619929 2_4:+42137689 None:intergenic
TTGCTTGTAACTGTAAACCT+AGG 0.624625 2_4:-42137435 Msa0329050:three_prime_UTR
CAAACTTGCACCACCACCGG+TGG 0.628444 2_4:+42137668 None:intergenic
TTTACACTAACAAACTCGGG+AGG 0.628511 2_4:+42137494 None:intergenic
ACAACATAAACTCTTATACA+AGG 0.630082 2_4:+42137522 None:intergenic
CCAATCCCATCCAACCATCA+GGG 0.630942 2_4:+42138374 None:intergenic
TTACACTAACAAACTCGGGA+GGG 0.636995 2_4:+42137495 None:intergenic
ATGAATGAAATGAAGGTGGG+GGG 0.637660 2_4:+42141526 None:intergenic
TGTCACTCCCAAATACAGCT+TGG 0.637672 2_4:-42139780 Msa0329050:CDS
CACACACACTCTCTCTACAA+TGG 0.637850 2_4:-42141467 Msa0329050:exon
CAACTTATCTTCCTCTACAA+GGG 0.642305 2_4:+42138634 None:intergenic
GTTGACATCCTTCTTCTCGG+TGG 0.644584 2_4:-42138707 Msa0329050:CDS
GGCTTGATACTGCCCCAACA+AGG 0.645353 2_4:+42138810 None:intergenic
GAGAACACTGAAACCGAGGG+TGG 0.647006 2_4:+42137549 None:intergenic
CTGCAGCGAAGCCAAGTCGG+CGG 0.647239 2_4:+42141326 None:intergenic
CCAATGAGTTCGGAGAGCCT+GGG 0.647952 2_4:+42139746 None:intergenic
TTGGTGGCTTCCCTTCCAGA+CGG 0.648069 2_4:-42139565 Msa0329050:CDS
TGGCCGACCTAAGTGGAAAG+GGG 0.648721 2_4:-42137770 Msa0329050:CDS
AGAAGAAAGATGTGGACGTG+AGG 0.650505 2_4:+42141555 None:intergenic
AGGGCCCATGCATCAACAGA+GGG 0.656285 2_4:-42139418 Msa0329050:CDS
GGCCGACCTAAGTGGAAAGG+GGG 0.657571 2_4:-42137769 Msa0329050:CDS
GGGAATATAGAAGAAAGATG+TGG 0.660399 2_4:+42141547 None:intergenic
TAATAGTTGGAATAGCAGCA+CGG 0.665962 2_4:+42141104 None:intergenic
AGAACACTGAAACCGAGGGT+GGG 0.674665 2_4:+42137550 None:intergenic
CGACTGGTGTAGCTTCATCG+AGG 0.684327 2_4:+42137607 None:intergenic
CAGGGCCCATGCATCAACAG+AGG 0.685126 2_4:-42139419 Msa0329050:CDS
TGTGAGAACACTGAAACCGA+GGG 0.688071 2_4:+42137546 None:intergenic
ATGAGCCACATATCCACCGG+TGG 0.700239 2_4:-42137681 Msa0329050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATCTAATTCAAAA+TGG - chr2_4:42137830-42137849 Msa0329050:intron 10.0%
!! AAATGATAATTAATTAATTG+AGG + chr2_4:42139962-42139981 None:intergenic 10.0%
!! TGAATTAGATATTTAATAGT+TGG + chr2_4:42137827-42137846 None:intergenic 15.0%
!!! CATATTTTAGTTATATAATG+TGG - chr2_4:42137923-42137942 Msa0329050:intron 15.0%
!!! ATTACTTATTTTACTCTATA+AGG - chr2_4:42138145-42138164 Msa0329050:intron 15.0%
!!! AGTAAAAATTAGATATTTTG+AGG - chr2_4:42138328-42138347 Msa0329050:CDS 15.0%
!!! CTATTTTTTCTTTAAAATAC+AGG + chr2_4:42138927-42138946 None:intergenic 15.0%
!! TTTATTAGATGAAAGTAAAT+GGG + chr2_4:42139769-42139788 None:intergenic 15.0%
!! GATAAATGTAAAAAAACTTA+TGG + chr2_4:42141547-42141566 None:intergenic 15.0%
!!! GTTTTTTTACATTTATCTTT+AGG - chr2_4:42141550-42141569 Msa0329050:five_prime_UTR 15.0%
!! ACTTATTTGAACTTATTTAT+TGG - chr2_4:42141587-42141606 Msa0329050:five_prime_UTR 15.0%
!! AATGAGATATATATACCAAA+TGG + chr2_4:42137877-42137896 None:intergenic 20.0%
!!! AATTGTTTTGAATTTGAGTT+AGG - chr2_4:42138364-42138383 Msa0329050:CDS 20.0%
!!! ATTGTTTTGAATTTGAGTTA+GGG - chr2_4:42138365-42138384 Msa0329050:CDS 20.0%
!! AATTTGAAGAAAAGTAGAAT+AGG - chr2_4:42138394-42138413 Msa0329050:CDS 20.0%
!!! TTCATACTAATGAAGTATTT+GGG - chr2_4:42138543-42138562 Msa0329050:CDS 20.0%
!!! TGCATTTTATTGTAATGTTA+AGG - chr2_4:42138668-42138687 Msa0329050:CDS 20.0%
!!! GCATTTTATTGTAATGTTAA+GGG - chr2_4:42138669-42138688 Msa0329050:CDS 20.0%
!! TCATTGTCTATAATTATATC+TGG - chr2_4:42138791-42138810 Msa0329050:CDS 20.0%
!! CAAACAAAAAATATGACAAA+AGG + chr2_4:42138857-42138876 None:intergenic 20.0%
!!! ATTTTTTGTTTGTGAAGTTA+AGG - chr2_4:42138865-42138884 Msa0329050:intron 20.0%
!! ATATAGGTTAATGATTATTG+AGG - chr2_4:42139207-42139226 Msa0329050:intron 20.0%
!!! TAGATAGTTTGCATAAAATT+TGG + chr2_4:42139617-42139636 None:intergenic 20.0%
!!! TATGCAAACTATCTAAAATA+AGG - chr2_4:42139622-42139641 Msa0329050:intron 20.0%
!! GTTTATTAGATGAAAGTAAA+TGG + chr2_4:42139770-42139789 None:intergenic 20.0%
!! AATTGTAAAAGAAAATAGTG+AGG + chr2_4:42139821-42139840 None:intergenic 20.0%
!!! TAATTGAAAATGTTTTCAGA+AGG - chr2_4:42139990-42140009 Msa0329050:intron 20.0%
!!! TTGAATGTTTTAATAGAATC+TGG + chr2_4:42140575-42140594 None:intergenic 20.0%
!!! CAAAAGTATTGTTTTGAAAT+TGG - chr2_4:42141016-42141035 Msa0329050:intron 20.0%
!! AAAATTTACACTAACAAACT+CGG + chr2_4:42141428-42141447 None:intergenic 20.0%
!! GGAATATTTATTTGAATTGA+TGG + chr2_4:42141513-42141532 None:intergenic 20.0%
! ATATTCTGATTATCATCAAG+AGG + chr2_4:42137773-42137792 None:intergenic 25.0%
! AGAATATTACTGATGATACT+AGG - chr2_4:42137786-42137805 Msa0329050:CDS 25.0%
! CAAACATAACAAATCATAGA+TGG + chr2_4:42138108-42138127 None:intergenic 25.0%
! CATACGAATCAAAAATTGAA+GGG + chr2_4:42138226-42138245 None:intergenic 25.0%
! ATGGATGTTGAATAAGATTA+TGG - chr2_4:42138462-42138481 Msa0329050:intron 25.0%
!! GTTCATACTAATGAAGTATT+TGG - chr2_4:42138542-42138561 Msa0329050:CDS 25.0%
!!! ATTTGGGTTTTAATTTGAAC+TGG - chr2_4:42138559-42138578 Msa0329050:CDS 25.0%
! ATTATCTAAATGCTTTGCTT+TGG - chr2_4:42138723-42138742 Msa0329050:CDS 25.0%
! TTAAATTTGTATAAACGCTG+TGG - chr2_4:42139051-42139070 Msa0329050:intron 25.0%
! GTTAATGATTATTGAGGAAT+GGG - chr2_4:42139213-42139232 Msa0329050:intron 25.0%
! ATAATCCAAATGCAAGAAAA+GGG + chr2_4:42139282-42139301 None:intergenic 25.0%
! AATAATCCAAATGCAAGAAA+AGG + chr2_4:42139283-42139302 None:intergenic 25.0%
!! TTGATGTTATTTAGTAGAAG+AGG + chr2_4:42139586-42139605 None:intergenic 25.0%
! CTTCTACTAAATAACATCAA+TGG - chr2_4:42139586-42139605 Msa0329050:CDS 25.0%
! TTGAGGAAAACAATTGTAAT+AGG + chr2_4:42139945-42139964 None:intergenic 25.0%
!! CATGCATATTTTCATGTTTT+AGG - chr2_4:42140072-42140091 Msa0329050:intron 25.0%
!! AATGATCTTCACATTTTACA+AGG - chr2_4:42140234-42140253 Msa0329050:intron 25.0%
! TAAAACATTCAATGAAGCAT+TGG - chr2_4:42140583-42140602 Msa0329050:intron 25.0%
! ATTTAAGTATGCATCACTAT+GGG + chr2_4:42140760-42140779 None:intergenic 25.0%
! TATTTAAGTATGCATCACTA+TGG + chr2_4:42140761-42140780 None:intergenic 25.0%
! ATAGAATATGTAGCAAGTAA+CGG + chr2_4:42141063-42141082 None:intergenic 25.0%
! CTTTGCAATAGACTAAAAAA+GGG + chr2_4:42141121-42141140 None:intergenic 25.0%
! TCTTTGCAATAGACTAAAAA+AGG + chr2_4:42141122-42141141 None:intergenic 25.0%
! ACAACATAAACTCTTATACA+AGG + chr2_4:42141396-42141415 None:intergenic 25.0%
! AAATTTACACTAACAAACTC+GGG + chr2_4:42141427-42141446 None:intergenic 25.0%
TGAATGAATGAAATGAAGGT+GGG + chr2_4:42137395-42137414 None:intergenic 30.0%
GAACTGAATGAATGAAATGA+AGG + chr2_4:42137399-42137418 None:intergenic 30.0%
!! GTTTAATTTGTATGCACTGA+CGG - chr2_4:42137983-42138002 Msa0329050:intron 30.0%
!! TAGTTTTACAAAGACATCCA+AGG + chr2_4:42138028-42138047 None:intergenic 30.0%
GCATACGAATCAAAAATTGA+AGG + chr2_4:42138227-42138246 None:intergenic 30.0%
TATAGGGAAGATAAAAGAAG+AGG + chr2_4:42138269-42138288 None:intergenic 30.0%
TTATCTTCCCTATATGTTCA+TGG - chr2_4:42138275-42138294 Msa0329050:CDS 30.0%
CTGATTTCCATGAACATATA+GGG + chr2_4:42138285-42138304 None:intergenic 30.0%
TCTGATTTCCATGAACATAT+AGG + chr2_4:42138286-42138305 None:intergenic 30.0%
ATTATGGAGATGATGAAGTA+TGG - chr2_4:42138478-42138497 Msa0329050:intron 30.0%
ACTTTAATCTTTACGCTCTA+AGG + chr2_4:42138602-42138621 None:intergenic 30.0%
TTATAACAATGCATGTTCGA+TGG - chr2_4:42138759-42138778 Msa0329050:CDS 30.0%
CGAAAAGATAATTACAGAGT+GGG + chr2_4:42138956-42138975 None:intergenic 30.0%
! ATTTATATCAAGAGTACGCA+TGG + chr2_4:42139001-42139020 None:intergenic 30.0%
! TGACTTTTGATGAAATTTGC+AGG - chr2_4:42139099-42139118 Msa0329050:intron 30.0%
! GACTTTTGATGAAATTTGCA+GGG - chr2_4:42139100-42139119 Msa0329050:intron 30.0%
GAATTGAGGTACGTTTATAT+AGG - chr2_4:42139191-42139210 Msa0329050:intron 30.0%
GGTTAATGATTATTGAGGAA+TGG - chr2_4:42139212-42139231 Msa0329050:intron 30.0%
GGATTATTGACAGGTTATTA+AGG - chr2_4:42139295-42139314 Msa0329050:intron 30.0%
TTCTACTTCTTGAAAATGTG+AGG - chr2_4:42139378-42139397 Msa0329050:CDS 30.0%
! TGAAAATGTGAGGTTTTACA+AGG - chr2_4:42139388-42139407 Msa0329050:CDS 30.0%
TCAAATGTGAATCATTCTCT+GGG - chr2_4:42139731-42139750 Msa0329050:intron 30.0%
! AAGACAAATGAAACACGTTT+TGG + chr2_4:42139884-42139903 None:intergenic 30.0%
! ATGTTTTCAGAAGGTAAACA+AGG - chr2_4:42139999-42140018 Msa0329050:intron 30.0%
! AAGCTACTTTAGATTAGCAA+CGG - chr2_4:42140422-42140441 Msa0329050:intron 30.0%
TTTAAGTATGCATCACTATG+GGG + chr2_4:42140759-42140778 None:intergenic 30.0%
GTGATGCATACTTAAATATG+TGG - chr2_4:42140763-42140782 Msa0329050:intron 30.0%
TTCTATTGTTCTACTTTGCA+CGG - chr2_4:42141077-42141096 Msa0329050:CDS 30.0%
TTAGTCTATTGCAAAGAAGT+TGG - chr2_4:42141125-42141144 Msa0329050:CDS 30.0%
GGGAATATAGAAGAAAGATG+TGG + chr2_4:42137371-42137390 None:intergenic 35.0%
AATGAATGAAATGAAGGTGG+GGG + chr2_4:42137393-42137412 None:intergenic 35.0%
GAATGAATGAAATGAAGGTG+GGG + chr2_4:42137394-42137413 None:intergenic 35.0%
CTGAATGAATGAAATGAAGG+TGG + chr2_4:42137396-42137415 None:intergenic 35.0%
TAATAGTTGGAATAGCAGCA+CGG + chr2_4:42137814-42137833 None:intergenic 35.0%
! AGTCATTCTTTCTAGCCATT+TGG - chr2_4:42137859-42137878 Msa0329050:intron 35.0%
! TTTTACAAAGACATCCAAGG+AGG + chr2_4:42138025-42138044 None:intergenic 35.0%
ATCTAAATGCTTTGCTTTGG+AGG - chr2_4:42138726-42138745 Msa0329050:CDS 35.0%
GCGAAAAGATAATTACAGAG+TGG + chr2_4:42138957-42138976 None:intergenic 35.0%
TTTGATGAAATTTGCAGGGA+AGG - chr2_4:42139104-42139123 Msa0329050:intron 35.0%
TACCTCAATTCCAATGAGTT+CGG + chr2_4:42139182-42139201 None:intergenic 35.0%
CTTGCATTTGGATTATTGAC+AGG - chr2_4:42139286-42139305 Msa0329050:intron 35.0%
! AAATGTGAGGTTTTACAAGG+AGG - chr2_4:42139391-42139410 Msa0329050:CDS 35.0%
CTGTATGTGAATGATGCATT+CGG - chr2_4:42139464-42139483 Msa0329050:CDS 35.0%
AAAAGAAAACCAGCAACAGA+TGG + chr2_4:42139542-42139561 None:intergenic 35.0%
!!! TGCTGGTTTTCTTTTGCAAA+AGG - chr2_4:42139547-42139566 Msa0329050:CDS 35.0%
! GGTTTTCTTTTGCAAAAGGT+TGG - chr2_4:42139551-42139570 Msa0329050:CDS 35.0%
GCAGTAAAAACAGAAAGTAG+CGG + chr2_4:42139664-42139683 None:intergenic 35.0%
GTCAAATGTGAATCATTCTC+TGG - chr2_4:42139730-42139749 Msa0329050:intron 35.0%
CAAATGTGAATCATTCTCTG+GGG - chr2_4:42139732-42139751 Msa0329050:intron 35.0%
CAATTGTAATAGGCTGAAGA+CGG + chr2_4:42139935-42139954 None:intergenic 35.0%
! TCCAAGGTCTCATCTAAAAT+TGG - chr2_4:42140160-42140179 Msa0329050:intron 35.0%
! TCCAATTTTAGATGAGACCT+TGG + chr2_4:42140164-42140183 None:intergenic 35.0%
AAAGTTGACATCCTTCTTCT+CGG - chr2_4:42140205-42140224 Msa0329050:intron 35.0%
! TTCACATTTTACAAGGCACA+AGG - chr2_4:42140241-42140260 Msa0329050:intron 35.0%
CAACTTATCTTCCTCTACAA+GGG + chr2_4:42140284-42140303 None:intergenic 35.0%
AACACTAATTGCAAAAGCCA+AGG - chr2_4:42140315-42140334 Msa0329050:intron 35.0%
AAGTAGCTTAGAAACAAACC+TGG + chr2_4:42140411-42140430 None:intergenic 35.0%
TCCATTCCATATGATGGTTT+GGG + chr2_4:42140615-42140634 None:intergenic 35.0%
ATCATATGGAATGGACCAAT+GGG - chr2_4:42140620-42140639 Msa0329050:intron 35.0%
GAACCAAACTCTATATGTGA+GGG + chr2_4:42140694-42140713 None:intergenic 35.0%
TGAACCAAACTCTATATGTG+AGG + chr2_4:42140695-42140714 None:intergenic 35.0%
! GTGTCTTCAATCAAAAGTGT+CGG + chr2_4:42140805-42140824 None:intergenic 35.0%
CATGTGTTTATGTTAGACAC+CGG + chr2_4:42140838-42140857 None:intergenic 35.0%
!! TAGGAGTTGGTGTTACTAAA+AGG - chr2_4:42140952-42140971 Msa0329050:intron 35.0%
!! AGGAGTTGGTGTTACTAAAA+GGG - chr2_4:42140953-42140972 Msa0329050:intron 35.0%
AAGGGTAGAGAATGTAAAAC+CGG + chr2_4:42141103-42141122 None:intergenic 35.0%
AAGCTGAAAATTGCCTTACA+CGG + chr2_4:42141334-42141353 None:intergenic 35.0%
!!! TGTAATTTTTTTCCCACCCT+CGG - chr2_4:42141353-42141372 Msa0329050:CDS 35.0%
TTGCTTGTAACTGTAAACCT+AGG - chr2_4:42141480-42141499 Msa0329050:five_prime_UTR 35.0%
TGTCTCTTATCGTTGAGATG+AGG + chr2_4:42137299-42137318 None:intergenic 40.0%
ATGAATGAAATGAAGGTGGG+GGG + chr2_4:42137392-42137411 None:intergenic 40.0%
!! AAGAGTGTTGGAGATTTGAG+TGG - chr2_4:42137698-42137717 Msa0329050:CDS 40.0%
!! AGAGTGTTGGAGATTTGAGT+GGG - chr2_4:42137699-42137718 Msa0329050:CDS 40.0%
TTTGATTCAAGTGTCCTCCT+TGG - chr2_4:42138008-42138027 Msa0329050:intron 40.0%
AGGTGAGTTGTTTGCTTTAG+AGG - chr2_4:42138165-42138184 Msa0329050:intron 40.0%
GAATATGAGTAACTCGCGTA+TGG - chr2_4:42138192-42138211 Msa0329050:intron 40.0%
ATGATGAAGTATGGAGACAG+AGG - chr2_4:42138487-42138506 Msa0329050:intron 40.0%
!! TAAATGCTTTGCTTTGGAGG+AGG - chr2_4:42138729-42138748 Msa0329050:CDS 40.0%
!! AGGAATGGGTTGAAACATGA+TGG - chr2_4:42139227-42139246 Msa0329050:intron 40.0%
! TGTTGCCCTTTTCTTGCATT+TGG - chr2_4:42139274-42139293 Msa0329050:intron 40.0%
ATTAAGGCCGAAGACAGTAT+TGG - chr2_4:42139311-42139330 Msa0329050:intron 40.0%
TTCTGGACCAATACTGTCTT+CGG + chr2_4:42139321-42139340 None:intergenic 40.0%
TGGTCCAGAAGTAGAAAAGT+TGG - chr2_4:42139331-42139350 Msa0329050:intron 40.0%
TCCAGAAGTAGAAAAGTTGG+TGG - chr2_4:42139334-42139353 Msa0329050:intron 40.0%
!!! GCAAGCTTTTTTGCATGTTC+AGG + chr2_4:42139431-42139450 None:intergenic 40.0%
! TATTTGAAGCCATCTGTTGC+TGG - chr2_4:42139530-42139549 Msa0329050:CDS 40.0%
! TCATTCTCTGGGGAAAACAT+AGG - chr2_4:42139742-42139761 Msa0329050:CDS 40.0%
TAGGAACTTGACTACCTTGT+TGG - chr2_4:42140091-42140110 Msa0329050:intron 40.0%
AGGAACTTGACTACCTTGTT+GGG - chr2_4:42140092-42140111 Msa0329050:intron 40.0%
CCAACTTATCTTCCTCTACA+AGG + chr2_4:42140285-42140304 None:intergenic 40.0%
CCTTGTAGAGGAAGATAAGT+TGG - chr2_4:42140282-42140301 Msa0329050:intron 40.0%
AATTGCAAAAGCCAAGGCAA+AGG - chr2_4:42140321-42140340 Msa0329050:intron 40.0%
ATTGCAAAAGCCAAGGCAAA+GGG - chr2_4:42140322-42140341 Msa0329050:intron 40.0%
ATACCACCCAAACCATCATA+TGG - chr2_4:42140606-42140625 Msa0329050:intron 40.0%
! ATTCCATATGATGGTTTGGG+TGG + chr2_4:42140612-42140631 None:intergenic 40.0%
ACCCAAACCATCATATGGAA+TGG - chr2_4:42140611-42140630 Msa0329050:intron 40.0%
GTCCATTCCATATGATGGTT+TGG + chr2_4:42140616-42140635 None:intergenic 40.0%
CATTGGTCCATTCCATATGA+TGG + chr2_4:42140621-42140640 None:intergenic 40.0%
CATCATATGGAATGGACCAA+TGG - chr2_4:42140619-42140638 Msa0329050:intron 40.0%
TCAAACTCAAACACTCCCAT+TGG + chr2_4:42140638-42140657 None:intergenic 40.0%
!! GAGTTTGACAAGTTTGCTGT+TGG - chr2_4:42140650-42140669 Msa0329050:intron 40.0%
GAACCCTCACATATAGAGTT+TGG - chr2_4:42140688-42140707 Msa0329050:intron 40.0%
!! CTTTTGATTGAAGACACGTC+CGG - chr2_4:42140808-42140827 Msa0329050:intron 40.0%
AAGGGGGTGACAACTATTAT+TGG - chr2_4:42141162-42141181 Msa0329050:CDS 40.0%
GTGACAACTATTATTGGAGG+AGG - chr2_4:42141168-42141187 Msa0329050:CDS 40.0%
TTACACTAACAAACTCGGGA+GGG + chr2_4:42141423-42141442 None:intergenic 40.0%
TTTACACTAACAAACTCGGG+AGG + chr2_4:42141424-42141443 None:intergenic 40.0%
AAACTTATGGCAGCAACTGA+TGG + chr2_4:42141534-42141553 None:intergenic 40.0%
AGAACGATTGGGTGTGGTTT+GGG + chr2_4:42137331-42137350 None:intergenic 45.0%
AAGAACGATTGGGTGTGGTT+TGG + chr2_4:42137332-42137351 None:intergenic 45.0%
AAAGGAAGAACGATTGGGTG+TGG + chr2_4:42137337-42137356 None:intergenic 45.0%
GGAGCAAAGGAAGAACGATT+GGG + chr2_4:42137342-42137361 None:intergenic 45.0%
AGGAGCAAAGGAAGAACGAT+TGG + chr2_4:42137343-42137362 None:intergenic 45.0%
AGAAGAAAGATGTGGACGTG+AGG + chr2_4:42137363-42137382 None:intergenic 45.0%
TGAATGAAATGAAGGTGGGG+GGG + chr2_4:42137391-42137410 None:intergenic 45.0%
CACACACACTCTCTCTACAA+TGG - chr2_4:42137448-42137467 Msa0329050:three_prime_UTR 45.0%
ATCCAACTCTCCTCATTCCT+CGG - chr2_4:42137554-42137573 Msa0329050:three_prime_UTR 45.0%
!! GAGTGTTGGAGATTTGAGTG+GGG - chr2_4:42137700-42137719 Msa0329050:CDS 45.0%
CTCTCTCTCGAATTGAGAGA+TGG - chr2_4:42138443-42138462 Msa0329050:intron 45.0%
AAATTTGCAGGGAAGGCCAA+AGG - chr2_4:42139111-42139130 Msa0329050:intron 45.0%
AATTTGCAGGGAAGGCCAAA+GGG - chr2_4:42139112-42139131 Msa0329050:intron 45.0%
TATTTGGGAGTGACACCCTT+TGG + chr2_4:42139130-42139149 None:intergenic 45.0%
TGTCACTCCCAAATACAGCT+TGG - chr2_4:42139135-42139154 Msa0329050:intron 45.0%
!! AGAGGTGCCAAGCTGTATTT+GGG + chr2_4:42139145-42139164 None:intergenic 45.0%
!! AAGAGGTGCCAAGCTGTATT+TGG + chr2_4:42139146-42139165 None:intergenic 45.0%
CTCCGAACTCATTGGAATTG+AGG - chr2_4:42139177-42139196 Msa0329050:intron 45.0%
! GCCACCAACTTTTCTACTTC+TGG + chr2_4:42139338-42139357 None:intergenic 45.0%
GGAACTTGACTACCTTGTTG+GGG - chr2_4:42140093-42140112 Msa0329050:intron 45.0%
AAGCCCAAAAAGGCCATTTG+CGG - chr2_4:42140123-42140142 Msa0329050:intron 45.0%
! TTGCCGCAAATGGCCTTTTT+GGG + chr2_4:42140129-42140148 None:intergenic 45.0%
! ATTGCCGCAAATGGCCTTTT+TGG + chr2_4:42140130-42140149 None:intergenic 45.0%
! AGTTGGTTCATCCCTTGTAG+AGG - chr2_4:42140270-42140289 Msa0329050:intron 45.0%
ATGCTGGCACAGTCTGAAAA+GGG + chr2_4:42140514-42140533 None:intergenic 45.0%
!! CAAGTTTGCTGTTGGAACAG+AGG - chr2_4:42140658-42140677 Msa0329050:intron 45.0%
AAGTATGCATCACTATGGGG+TGG + chr2_4:42140756-42140775 None:intergenic 45.0%
ATTGTTCTACTTTGCACGGC+CGG - chr2_4:42141081-42141100 Msa0329050:CDS 45.0%
GGGGTGACAACTATTATTGG+AGG - chr2_4:42141165-42141184 Msa0329050:CDS 45.0%
GGATATGTGGCTCATGACAT+CGG + chr2_4:42141229-42141248 None:intergenic 45.0%
! TGGTGCAAGTTTGGAGCTAT+TGG - chr2_4:42141257-42141276 Msa0329050:CDS 45.0%
! GCAAGTTTGGAGCTATTGGA+AGG - chr2_4:42141261-42141280 Msa0329050:CDS 45.0%
TGTGAGAACACTGAAACCGA+GGG + chr2_4:42141372-42141391 None:intergenic 45.0%
TTGTGAGAACACTGAAACCG+AGG + chr2_4:42141373-42141392 None:intergenic 45.0%
! GAATTGATGGCTTTCAGCCT+AGG + chr2_4:42141500-42141519 None:intergenic 45.0%
!! TGGGTGTGGTTTGGGGATTT+TGG + chr2_4:42137323-42137342 None:intergenic 50.0%
GAACGATTGGGTGTGGTTTG+GGG + chr2_4:42137330-42137349 None:intergenic 50.0%
! AAGAGGATTTAGTGGTGGGG+AGG + chr2_4:42137505-42137524 None:intergenic 50.0%
GGGAAGAGGATTTAGTGGTG+GGG + chr2_4:42137508-42137527 None:intergenic 50.0%
GGGGAAGAGGATTTAGTGGT+GGG + chr2_4:42137509-42137528 None:intergenic 50.0%
TGGGGAAGAGGATTTAGTGG+TGG + chr2_4:42137510-42137529 None:intergenic 50.0%
GGATGGGGAAGAGGATTTAG+TGG + chr2_4:42137513-42137532 None:intergenic 50.0%
GAATGAGGAGAGTTGGATGC+GGG + chr2_4:42137552-42137571 None:intergenic 50.0%
GGAATGAGGAGAGTTGGATG+CGG + chr2_4:42137553-42137572 None:intergenic 50.0%
! AGTAAGAGGAGTGGTGTCGA+TGG - chr2_4:42137670-42137689 Msa0329050:CDS 50.0%
! TCGATGGCGAAGAAGAGTGT+TGG - chr2_4:42137686-42137705 Msa0329050:CDS 50.0%
TGTTGGAGATTTGAGTGGGG+CGG - chr2_4:42137703-42137722 Msa0329050:CDS 50.0%
TTGAGTGGGGCGGAGTTAAA+AGG - chr2_4:42137713-42137732 Msa0329050:CDS 50.0%
TAGAACTCCTCCGTCTGGAA+GGG + chr2_4:42139363-42139382 None:intergenic 50.0%
AGAAGTAGAACTCCTCCGTC+TGG + chr2_4:42139368-42139387 None:intergenic 50.0%
CACATACAGATCTGCGAGTG+CGG + chr2_4:42139453-42139472 None:intergenic 50.0%
ATGCATTCGGTACTGCTCAC+AGG - chr2_4:42139477-42139496 Msa0329050:CDS 50.0%
TGCATTCGGTACTGCTCACA+GGG - chr2_4:42139478-42139497 Msa0329050:CDS 50.0%
GACTCCCTCTGTTGATGCAT+GGG + chr2_4:42139504-42139523 None:intergenic 50.0%
TGACTCCCTCTGTTGATGCA+TGG + chr2_4:42139505-42139524 None:intergenic 50.0%
GCTGAAGACGGAAGACAAGT+TGG + chr2_4:42139923-42139942 None:intergenic 50.0%
GGGCAGTATCAAGCCCAAAA+AGG - chr2_4:42140113-42140132 Msa0329050:intron 50.0%
AAGGCCATTTGCGGCAATTG+TGG - chr2_4:42140132-42140151 Msa0329050:intron 50.0%
AGGCCATTTGCGGCAATTGT+GGG - chr2_4:42140133-42140152 Msa0329050:intron 50.0%
GTTGACATCCTTCTTCTCGG+TGG - chr2_4:42140208-42140227 Msa0329050:intron 50.0%
TCATTCCTCCACCGAGAAGA+AGG + chr2_4:42140219-42140238 None:intergenic 50.0%
AAGGCACAAGGTCTTGCAGT+TGG - chr2_4:42140253-42140272 Msa0329050:intron 50.0%
ACTCTTGCTGCCAAGTGATG+TGG - chr2_4:42140351-42140370 Msa0329050:intron 50.0%
TCTGCGATCACCACATCACT+TGG + chr2_4:42140364-42140383 None:intergenic 50.0%
CAAACCTGGCTGTTTGCATC+AGG + chr2_4:42140397-42140416 None:intergenic 50.0%
GATGCTGGCACAGTCTGAAA+AGG + chr2_4:42140515-42140534 None:intergenic 50.0%
CATCTGCTATCCCTGATGGT+TGG - chr2_4:42140531-42140550 Msa0329050:intron 50.0%
TGCTATCCCTGATGGTTGGA+TGG - chr2_4:42140535-42140554 Msa0329050:intron 50.0%
GCTATCCCTGATGGTTGGAT+GGG - chr2_4:42140536-42140555 Msa0329050:intron 50.0%
CCAATCCCATCCAACCATCA+GGG + chr2_4:42140544-42140563 None:intergenic 50.0%
TCCAATCCCATCCAACCATC+AGG + chr2_4:42140545-42140564 None:intergenic 50.0%
GGTTGGATGGGATTGGACAT+TGG - chr2_4:42140548-42140567 Msa0329050:intron 50.0%
TATGTTAGACACCGGACGTC+CGG + chr2_4:42140830-42140849 None:intergenic 50.0%
GGTGACACAGACACGAACAT+CGG + chr2_4:42140921-42140940 None:intergenic 50.0%
CCAACTCCTACTCGATGAAG+CGG + chr2_4:42140942-42140961 None:intergenic 50.0%
AAGAAGTTGGCCGACCTAAG+TGG - chr2_4:42141138-42141157 Msa0329050:CDS 50.0%
TTGGCCGACCTAAGTGGAAA+GGG - chr2_4:42141144-42141163 Msa0329050:CDS 50.0%
TTGTCACCCCCTTTCCACTT+AGG + chr2_4:42141155-42141174 None:intergenic 50.0%
AGGAGATTCTGTTGCAGCTG+TGG - chr2_4:42141188-42141207 Msa0329050:CDS 50.0%
GTTGCAGCTGTGGAGAAAGT+AGG - chr2_4:42141198-42141217 Msa0329050:CDS 50.0%
GTCATGAGCCACATATCCAC+CGG - chr2_4:42141231-42141250 Msa0329050:CDS 50.0%
TTGGAAGGCAAAGAGCTTCC+CGG - chr2_4:42141276-42141295 Msa0329050:CDS 50.0%
GACTGGTGTAGCTTCATCGA+GGG + chr2_4:42141310-42141329 None:intergenic 50.0%
AAATTGCCTTACACGGCGAC+TGG + chr2_4:42141327-42141346 None:intergenic 50.0%
AGAACACTGAAACCGAGGGT+GGG + chr2_4:42141368-42141387 None:intergenic 50.0%
GATGTGGACGTGAGGAGCAA+AGG + chr2_4:42137355-42137374 None:intergenic 55.0%
GAGGAGTGAGATGGTTGTGG+GGG + chr2_4:42137486-42137505 None:intergenic 55.0%
GGAGGAGTGAGATGGTTGTG+GGG + chr2_4:42137487-42137506 None:intergenic 55.0%
GGGAGGAGTGAGATGGTTGT+GGG + chr2_4:42137488-42137507 None:intergenic 55.0%
TGCAGCTGACCCTTTGTTGG+CGG - chr2_4:42137607-42137626 Msa0329050:CDS 55.0%
TCGAAGGTGAGGACAGTGAG+CGG - chr2_4:42137641-42137660 Msa0329050:CDS 55.0%
CCAATGAGTTCGGAGAGCCT+GGG + chr2_4:42139172-42139191 None:intergenic 55.0%
TCCAATGAGTTCGGAGAGCC+TGG + chr2_4:42139173-42139192 None:intergenic 55.0%
! TTGGTGGCTTCCCTTCCAGA+CGG - chr2_4:42139350-42139369 Msa0329050:intron 55.0%
GTAGAACTCCTCCGTCTGGA+AGG + chr2_4:42139364-42139383 None:intergenic 55.0%
AGGGCCCATGCATCAACAGA+GGG - chr2_4:42139497-42139516 Msa0329050:CDS 55.0%
GGCTTGATACTGCCCCAACA+AGG + chr2_4:42140108-42140127 None:intergenic 55.0%
CCACCCACAATTGCCGCAAA+TGG + chr2_4:42140139-42140158 None:intergenic 55.0%
CCATTTGCGGCAATTGTGGG+TGG - chr2_4:42140136-42140155 Msa0329050:intron 55.0%
GGCAATTGTGGGTGGTTCCA+AGG - chr2_4:42140144-42140163 Msa0329050:intron 55.0%
GACATCCTTCTTCTCGGTGG+AGG - chr2_4:42140211-42140230 Msa0329050:intron 55.0%
GAGTGACACACCCTTTGCCT+TGG + chr2_4:42140335-42140354 None:intergenic 55.0%
TGCTCCTGATGCAAACAGCC+AGG - chr2_4:42140390-42140409 Msa0329050:intron 55.0%
CCATCAGGGATAGCAGATGC+TGG + chr2_4:42140530-42140549 None:intergenic 55.0%
CCAGCATCTGCTATCCCTGA+TGG - chr2_4:42140527-42140546 Msa0329050:intron 55.0%
CCCTGATGGTTGGATGGGAT+TGG - chr2_4:42140541-42140560 Msa0329050:intron 55.0%
GTGTCACCGCTTCATCGAGT+AGG - chr2_4:42140933-42140952 Msa0329050:intron 55.0%
CCGCTTCATCGAGTAGGAGT+TGG - chr2_4:42140939-42140958 Msa0329050:intron 55.0%
GTTGGCCGACCTAAGTGGAA+AGG - chr2_4:42141143-42141162 Msa0329050:CDS 55.0%
TGGCCGACCTAAGTGGAAAG+GGG - chr2_4:42141145-42141164 Msa0329050:CDS 55.0%
CACCCCCTTTCCACTTAGGT+CGG + chr2_4:42141151-42141170 None:intergenic 55.0%
ATGAGCCACATATCCACCGG+TGG - chr2_4:42141234-42141253 Msa0329050:CDS 55.0%
CTCCAAACTTGCACCACCAC+CGG + chr2_4:42141253-42141272 None:intergenic 55.0%
TTCATCGAGGGCGAGAACAC+CGG + chr2_4:42141298-42141317 None:intergenic 55.0%
CGACTGGTGTAGCTTCATCG+AGG + chr2_4:42141311-42141330 None:intergenic 55.0%
GAGAACACTGAAACCGAGGG+TGG + chr2_4:42141369-42141388 None:intergenic 55.0%
GGGGAGGAGTGAGATGGTTG+TGG + chr2_4:42137489-42137508 None:intergenic 60.0%
! AGTGGTGGGGAGGAGTGAGA+TGG + chr2_4:42137495-42137514 None:intergenic 60.0%
AGGAGAGTTGGATGCGGGAG+GGG + chr2_4:42137547-42137566 None:intergenic 60.0%
GAGGAGAGTTGGATGCGGGA+GGG + chr2_4:42137548-42137567 None:intergenic 60.0%
TGAGGAGAGTTGGATGCGGG+AGG + chr2_4:42137549-42137568 None:intergenic 60.0%
CGCCGAGGAATGAGGAGAGT+TGG + chr2_4:42137559-42137578 None:intergenic 60.0%
CAGCTGCAGCGAAGCCAAGT+CGG + chr2_4:42137595-42137614 None:intergenic 60.0%
CGCTGCAGCTGACCCTTTGT+TGG - chr2_4:42137604-42137623 Msa0329050:CDS 60.0%
TGACCCTTTGTTGGCGGTGC+AGG - chr2_4:42137613-42137632 Msa0329050:CDS 60.0%
CCACCTGCACCGCCAACAAA+GGG + chr2_4:42137619-42137638 None:intergenic 60.0%
CGAAGGTGAGGACAGTGAGC+GGG - chr2_4:42137642-42137661 Msa0329050:CDS 60.0%
GTGAGCGGGAGAGGAGTAAG+AGG - chr2_4:42137656-42137675 Msa0329050:CDS 60.0%
CGGGAGAGGAGTAAGAGGAG+TGG - chr2_4:42137661-42137680 Msa0329050:CDS 60.0%
GCTTGGCACCTCTTGTTCCC+AGG - chr2_4:42139152-42139171 Msa0329050:intron 60.0%
TCGGAGAGCCTGGGAACAAG+AGG + chr2_4:42139163-42139182 None:intergenic 60.0%
CCCAGGCTCTCCGAACTCAT+TGG - chr2_4:42139169-42139188 Msa0329050:intron 60.0%
CAGGGCCCATGCATCAACAG+AGG - chr2_4:42139496-42139515 Msa0329050:CDS 60.0%
TGAAGACACGTCCGGACGTC+CGG - chr2_4:42140816-42140835 Msa0329050:intron 60.0%
GGCCGACCTAAGTGGAAAGG+GGG - chr2_4:42141146-42141165 Msa0329050:CDS 60.0%
AGCCACATATCCACCGGTGG+TGG - chr2_4:42141237-42141256 Msa0329050:CDS 60.0%
CACCACCACCGGTGGATATG+TGG + chr2_4:42141242-42141261 None:intergenic 60.0%
CAAACTTGCACCACCACCGG+TGG + chr2_4:42141250-42141269 None:intergenic 60.0%
! CACCGGTGGTGGTGCAAGTT+TGG - chr2_4:42141248-42141267 Msa0329050:CDS 60.0%
TCATCGAGGGCGAGAACACC+GGG + chr2_4:42141297-42141316 None:intergenic 60.0%
GCTACACCAGTCGCCGTGTA+AGG - chr2_4:42141318-42141337 Msa0329050:CDS 60.0%
!! TGGGGTGGTGGATGGGGAAG+AGG + chr2_4:42137522-42137541 None:intergenic 65.0%
!! AGGGGGATGGGGTGGTGGAT+GGG + chr2_4:42137529-42137548 None:intergenic 65.0%
TTGGATGCGGGAGGGGGATG+GGG + chr2_4:42137540-42137559 None:intergenic 65.0%
GTTGGATGCGGGAGGGGGAT+GGG + chr2_4:42137541-42137560 None:intergenic 65.0%
AGTTGGATGCGGGAGGGGGA+TGG + chr2_4:42137542-42137561 None:intergenic 65.0%
GGAGAGTTGGATGCGGGAGG+GGG + chr2_4:42137546-42137565 None:intergenic 65.0%
CGAAGCCAAGTCGGCGGAGT+GGG + chr2_4:42137586-42137605 None:intergenic 65.0%
CTGCAGCGAAGCCAAGTCGG+CGG + chr2_4:42137592-42137611 None:intergenic 65.0%
CCCTTTGTTGGCGGTGCAGG+TGG - chr2_4:42137616-42137635 Msa0329050:CDS 65.0%
GCCACCTGCACCGCCAACAA+AGG + chr2_4:42137620-42137639 None:intergenic 65.0%
! TGCAGGTGGCGTCGAAGGTG+AGG - chr2_4:42137630-42137649 Msa0329050:CDS 65.0%
GTGAGGACAGTGAGCGGGAG+AGG - chr2_4:42137647-42137666 Msa0329050:CDS 65.0%
GTGGCTTCCCTTCCAGACGG+AGG - chr2_4:42139353-42139372 Msa0329050:intron 65.0%
!! GGGGGATGGGGTGGTGGATG+GGG + chr2_4:42137528-42137547 None:intergenic 70.0%
!! GAGGGGGATGGGGTGGTGGA+TGG + chr2_4:42137530-42137549 None:intergenic 70.0%
AGCCAAGTCGGCGGAGTGGG+CGG + chr2_4:42137583-42137602 None:intergenic 70.0%
GCGAAGCCAAGTCGGCGGAG+TGG + chr2_4:42137587-42137606 None:intergenic 70.0%
GATGCGGGAGGGGGATGGGG+TGG + chr2_4:42137537-42137556 None:intergenic 75.0%
!! TGGGCGGGCGCCGAGGAATG+AGG + chr2_4:42137567-42137586 None:intergenic 75.0%
GCCAAGTCGGCGGAGTGGGC+GGG + chr2_4:42137582-42137601 None:intergenic 75.0%
! GGCGGTGCAGGTGGCGTCGA+AGG - chr2_4:42137625-42137644 Msa0329050:CDS 75.0%
! GCGGGAGGGGGATGGGGTGG+TGG + chr2_4:42137534-42137553 None:intergenic 80.0%
!! GCCCGCCCACTCCGCCGACT+TGG - chr2_4:42137578-42137597 Msa0329050:three_prime_UTR 80.0%
!! GGCGGAGTGGGCGGGCGCCG+AGG + chr2_4:42137574-42137593 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 42137276 42141661 42137276 ID=Msa0329050;Name=Msa0329050
chr2_4 mRNA 42137276 42141661 42137276 ID=Msa0329050-mRNA-1;Parent=Msa0329050;Name=Msa0329050-mRNA-1;_AED=0.35;_eAED=0.35;_QI=191|1|1|1|1|1|6|323|479
chr2_4 exon 42137276 42137808 42137276 ID=Msa0329050-mRNA-1:exon:12997;Parent=Msa0329050-mRNA-1
chr2_4 exon 42138258 42138416 42138258 ID=Msa0329050-mRNA-1:exon:12996;Parent=Msa0329050-mRNA-1
chr2_4 exon 42138526 42138843 42138526 ID=Msa0329050-mRNA-1:exon:12995;Parent=Msa0329050-mRNA-1
chr2_4 exon 42139369 42139629 42139369 ID=Msa0329050-mRNA-1:exon:12994;Parent=Msa0329050-mRNA-1
chr2_4 exon 42139739 42139816 42139739 ID=Msa0329050-mRNA-1:exon:12993;Parent=Msa0329050-mRNA-1
chr2_4 exon 42141057 42141661 42141057 ID=Msa0329050-mRNA-1:exon:12992;Parent=Msa0329050-mRNA-1
chr2_4 five_prime_UTR 42141471 42141661 42141471 ID=Msa0329050-mRNA-1:five_prime_utr;Parent=Msa0329050-mRNA-1
chr2_4 CDS 42141057 42141470 42141057 ID=Msa0329050-mRNA-1:cds;Parent=Msa0329050-mRNA-1
chr2_4 CDS 42139739 42139816 42139739 ID=Msa0329050-mRNA-1:cds;Parent=Msa0329050-mRNA-1
chr2_4 CDS 42139369 42139629 42139369 ID=Msa0329050-mRNA-1:cds;Parent=Msa0329050-mRNA-1
chr2_4 CDS 42138526 42138843 42138526 ID=Msa0329050-mRNA-1:cds;Parent=Msa0329050-mRNA-1
chr2_4 CDS 42138258 42138416 42138258 ID=Msa0329050-mRNA-1:cds;Parent=Msa0329050-mRNA-1
chr2_4 CDS 42137599 42137808 42137599 ID=Msa0329050-mRNA-1:cds;Parent=Msa0329050-mRNA-1
chr2_4 three_prime_UTR 42137276 42137598 42137276 ID=Msa0329050-mRNA-1:three_prime_utr;Parent=Msa0329050-mRNA-1
Gene Sequence

>Msa0329050

ATGGCTTCAGCTACAGCCCCCACAACCATCTCACTCCTCCCCACCACTAAATCCTCTTCCCCATCCACCACCCCATCCCCCTCCCGCATCCAACTCTCCTCATTCCTCGGCGCCCGCCCACTCCGCCGACTTGGCTTCGCTGCAGCTGACCCTTTGTTGGCGGTGCAGGTGGCGTCGAAGGTGAGGACAGTGAGCGGGAGAGGAGTAAGAGGAGTGGTGTCGATGGCGAAGAAGAGTGTTGGAGATTTGAGTGGGGCGGAGTTAAAAGGAAAGAAAGTGTTTGTGAGAGCTGACTTGAATGTTCCTCTTGATGATAATCAGAATATTACTGATGATACTAGGATCCGTGCTGCTATTCCAACTATTAAATATCTAATTCAAAATGGTGCTAAAGTCATTCTTTCTAGCCATTTGGGAAGGCCAAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTTCCCAGGCTCTCCGAACTCATTGGAATTGAGGTTATTAAGGCCGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCCCTTCCAGACGGAGGAGTTCTACTTCTTGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCTGAACATGCAAAAAAGCTTGCCGCACTCGCAGATCTGTATGTGAATGATGCATTCGGTACTGCTCACAGGGCCCATGCATCAACAGAGGGAGTCACTAAATATTTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGAACTTGACTACCTTGTTGGGGCAGTATCAAGCCCAAAAAGGCCATTTGCGGCAATTGTGGGTGGTTCCAAGGTCTCATCTAAAATTGGAGTGATTGAATCACTTCTAGAAAAAGTTGACATCCTTCTTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTGCAGTTGGTTCATCCCTTGTAGAGGAAGATAAGTTGGATCTTGCTACAACACTAATTGCAAAAGCCAAGGCAAAGGGTGTGTCACTCTTGCTGCCAAGTGATGTGGTGATCGCAGACAAATTTGCTCCTGATGCAAACAGCCAGACTGTGCCAGCATCTGCTATCCCTGATGGTTGGATGGGATTGGACATTGGTCCAGATTCTATTAAAACATTCAATGAAGCATTGGATACCACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGAACAGAGTCTATTGCAAAGAAGTTGGCCGACCTAAGTGGAAAGGGGGTGACAACTATTATTGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCCGATGTCATGAGCCACATATCCACCGGTGGTGGTGCAAGTTTGGAGCTATTGGAAGGCAAAGAGCTTCCCGGTGTTCTCGCCCTCGATGAAGCTACACCAGTCGCCGTGTAA

Protein sequence

>Msa0329050

MASATAPTTISLLPTTKSSSPSTTPSPSRIQLSSFLGARPLRRLGFAAADPLLAVQVASKVRTVSGRGVRGVVSMAKKSVGDLSGAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIEVIKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLAALADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLAVGSSLVEEDKLDLATTLIAKAKAKGVSLLLPSDVVIADKFAPDANSQTVPASAIPDGWMGLDIGPDSIKTFNEALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEATPVAV*