AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0412470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412470 MtrunA17_Chr1g0213971 97.541 244 4 1 2 245 3 244 2.82e-173 476
Msa0412470 MtrunA17_Chr7g0270991 63.590 195 68 1 50 244 68 259 2.55e-88 262
Msa0412470 MtrunA17_Chr1g0193711 61.905 210 72 3 40 244 43 249 1.47e-86 257
Msa0412470 MtrunA17_Chr3g0104751 61.957 184 59 3 68 244 24 203 1.23e-72 220
Msa0412470 MtrunA17_Chr3g0113441 55.288 208 68 5 56 242 28 231 2.87e-68 210
Msa0412470 MtrunA17_Chr3g0145501 61.404 171 55 3 79 242 13 179 3.67e-68 208
Msa0412470 MtrunA17_Chr7g0274841 59.649 171 58 3 79 242 5 171 9.60e-67 204
Msa0412470 MtrunA17_Chr4g0038431 60.920 174 57 3 76 242 2 171 1.07e-66 204
Msa0412470 MtrunA17_Chr8g0374621 57.558 172 62 2 79 242 5 173 1.99e-61 196
Msa0412470 MtrunA17_Chr4g0037281 49.485 194 89 2 57 243 25 216 1.58e-58 185
Msa0412470 MtrunA17_Chr4g0045321 54.913 173 67 2 79 243 5 174 3.14e-58 188
Msa0412470 MtrunA17_Chr8g0353571 52.688 186 79 3 63 242 3 185 8.09e-58 182
Msa0412470 MtrunA17_Chr7g0260441 56.322 174 64 3 80 245 9 178 3.84e-55 187
Msa0412470 MtrunA17_Chr2g0321111 54.167 144 61 3 94 236 470 609 1.34e-42 152
Msa0412470 MtrunA17_Chr7g0266721 49.306 144 68 4 94 236 18 157 2.66e-39 134
Msa0412470 MtrunA17_Chr3g0138061 45.930 172 79 4 80 242 12 178 4.63e-37 138
Msa0412470 MtrunA17_Chr8g0351571 47.586 145 71 4 94 237 9 149 1.73e-36 126
Msa0412470 MtrunA17_Chr3g0122871 56.667 120 24 3 138 230 1 119 1.25e-34 120
Msa0412470 MtrunA17_Chr1g0149061 47.333 150 65 4 80 220 9 153 5.87e-33 126
Msa0412470 MtrunA17_Chr5g0401141 47.222 144 71 4 95 237 354 493 5.04e-31 120
Msa0412470 MtrunA17_Chr2g0288371 43.972 141 70 7 95 231 22 157 1.93e-21 92.8
Msa0412470 MtrunA17_Chr6g0484281 39.869 153 77 6 94 236 9 156 1.63e-19 87.4
Msa0412470 MtrunA17_Chr8g0357591 39.216 153 78 6 94 236 9 156 3.35e-18 83.6
Msa0412470 MtrunA17_Chr2g0305071 27.869 244 114 10 64 245 44 287 2.16e-16 76.6
Msa0412470 MtrunA17_Chr1g0199071 35.811 148 72 7 95 236 89 219 2.38e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412470 AT5G13120.2 83.237 173 29 0 73 245 81 253 1.17e-111 321
Msa0412470 AT5G13120.1 83.237 173 29 0 73 245 85 257 1.52e-111 321
Msa0412470 AT3G62030.1 66.321 193 61 2 53 244 69 258 8.32e-90 266
Msa0412470 AT3G62030.3 65.625 192 63 1 53 244 69 257 1.19e-89 266
Msa0412470 AT3G62030.2 66.321 193 61 2 53 244 122 311 4.83e-89 266
Msa0412470 AT2G29960.1 62.712 177 55 3 75 244 29 201 4.72e-72 219
Msa0412470 AT2G29960.3 62.712 177 55 3 75 244 29 201 4.72e-72 219
Msa0412470 AT5G58710.1 62.147 177 56 3 75 244 32 204 2.06e-71 217
Msa0412470 AT2G21130.1 62.573 171 53 3 79 242 6 172 1.99e-70 214
Msa0412470 AT2G16600.1 61.988 171 54 3 79 242 6 172 2.53e-69 211
Msa0412470 AT4G38740.1 60.819 171 56 3 79 242 5 171 5.61e-68 207
Msa0412470 AT3G56070.1 59.064 171 59 3 79 242 5 171 1.56e-66 204
Msa0412470 AT3G56070.2 59.064 171 59 3 79 242 5 171 1.56e-66 204
Msa0412470 AT3G55920.1 59.322 177 59 4 76 244 57 228 2.78e-65 202
Msa0412470 AT4G34870.1 60.234 171 57 3 79 242 5 171 9.10e-65 199
Msa0412470 AT2G29960.2 59.322 177 51 4 75 244 29 191 6.63e-64 197
Msa0412470 AT4G34960.1 52.128 188 80 2 63 243 32 216 2.86e-59 187
Msa0412470 AT2G15790.1 57.225 173 63 2 79 243 5 174 8.54e-59 190
Msa0412470 AT2G16600.2 57.317 164 51 3 79 242 6 150 2.06e-58 182
Msa0412470 AT2G38730.1 55.621 169 66 3 80 242 34 199 8.92e-58 182
Msa0412470 AT3G63400.2 59.412 170 57 3 80 241 9 174 3.55e-57 187
Msa0412470 AT3G63400.3 59.412 170 57 3 80 241 9 174 1.50e-55 187
Msa0412470 AT3G63400.4 59.412 170 57 3 80 241 9 174 1.50e-55 187
Msa0412470 AT3G63400.1 59.412 170 57 3 80 241 9 174 1.50e-55 187
Msa0412470 AT4G34960.2 53.846 143 56 2 63 198 32 171 6.00e-45 149
Msa0412470 AT3G44600.1 54.167 144 61 3 94 236 484 623 1.16e-42 153
Msa0412470 AT2G36130.1 47.917 144 70 4 94 236 18 157 1.01e-39 135
Msa0412470 AT1G01940.1 46.897 145 72 4 94 237 9 149 1.62e-37 129
Msa0412470 AT3G22920.1 45.714 175 72 8 79 242 5 167 1.04e-31 116
Msa0412470 AT5G67530.1 46.853 143 71 4 95 236 353 491 1.26e-31 122
Msa0412470 AT4G32420.1 41.808 177 89 4 75 242 4 175 3.09e-29 115
Msa0412470 AT4G32420.5 41.808 177 89 4 75 242 4 175 3.09e-29 115
Msa0412470 AT4G32420.3 41.808 177 89 4 75 242 4 175 3.09e-29 115
Msa0412470 AT4G32420.6 41.808 177 89 4 75 242 4 175 3.09e-29 115
Msa0412470 AT4G32420.4 43.226 155 75 3 75 220 4 154 1.01e-27 111
Msa0412470 AT4G33060.1 44.681 141 69 7 95 231 22 157 1.75e-24 101
Msa0412470 AT1G53720.2 40.789 152 77 5 94 236 9 156 1.29e-22 95.1
Msa0412470 AT1G53720.1 40.789 152 77 5 94 236 9 156 1.17e-21 93.6

Find 114 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGATTGTCACCTTCTTT+AGG 0.241303 3_2:-55874138 None:intergenic
GATCAGAGGCATGTTGTATT+TGG 0.249985 3_2:+55874046 Msa0412470:CDS
TTCATAAATCTAAATCAGTT+TGG 0.255873 3_2:+55874315 Msa0412470:three_prime_UTR
AAATGAGTTTAAGTTATTCT+AGG 0.267655 3_2:-55874394 None:intergenic
ACTGATTGTCACCTTCTTTA+GGG 0.273487 3_2:-55874137 None:intergenic
TCATAAATCTAAATCAGTTT+GGG 0.286580 3_2:+55874316 Msa0412470:three_prime_UTR
TGGAAGGCATGGACATTGTT+AGG 0.309018 3_2:+55874077 Msa0412470:CDS
GTTATAAGGTCTATAATAAT+GGG 0.334365 3_2:+55872875 Msa0412470:five_prime_UTR
CAAGGAGGAGACTTTGATAA+AGG 0.345816 3_2:+55873526 Msa0412470:CDS
AAAGTGAGGGCAGTGGAAAA+TGG 0.351843 3_2:+55873274 Msa0412470:CDS
TGTTGTATTTGGCCAAGTTT+TGG 0.352436 3_2:+55874057 Msa0412470:CDS
TGTTATAAGGTCTATAATAA+TGG 0.352864 3_2:+55872874 Msa0412470:five_prime_UTR
GTGGATTGAGTAGTGTTATA+AGG 0.355070 3_2:+55872861 Msa0412470:five_prime_UTR
ATCCTTCCTTCCTTCTTCTT+CGG 0.355524 3_2:+55872979 Msa0412470:five_prime_UTR
TCCACCGGTGAGAAGGGCTT+TGG 0.377046 3_2:+55873457 Msa0412470:CDS
GTGTGGAGAAAGGGAGTTAA+TGG 0.380638 3_2:+55874548 Msa0412470:three_prime_UTR
ATCTATCTATCGCAGGGAAC+TGG 0.385423 3_2:+55873611 Msa0412470:intron
AACAAAACATGTCAAGCAAT+TGG 0.393584 3_2:-55874175 None:intergenic
CTTCCAACCAGCTTCCCAAC+TGG 0.403156 3_2:-55873373 None:intergenic
ACTGGAGGCAAAAGTATCTA+TGG 0.406648 3_2:+55873629 Msa0412470:CDS
GTTCTAGTGGGTGTGGAGAA+AGG 0.407477 3_2:+55874538 Msa0412470:three_prime_UTR
GCATCTCCGTCGGGGTGGTT+AGG 0.409454 3_2:+55873203 Msa0412470:CDS
TTATTTCTATCTCTATGAAA+TGG 0.409659 3_2:+55872813 None:intergenic
GGAAGTTCTCAACAGTTTGC+GGG 0.417261 3_2:-55873426 None:intergenic
TGCCCTTTCCACCGGTGAGA+AGG 0.418329 3_2:+55873450 Msa0412470:CDS
TTGAGTTGAATAGATAGATT+AGG 0.424055 3_2:+55872921 Msa0412470:five_prime_UTR
TTCTTTGTTTCTTGCTGCTG+AGG 0.427286 3_2:+55874210 Msa0412470:three_prime_UTR
GTATTCTTTGATGTTAGTAT+TGG 0.430298 3_2:+55873346 Msa0412470:CDS
AACTGACTCCCATTGGTGTT+GGG 0.430322 3_2:-55873899 None:intergenic
GCCCTTCTCACCGGTGGAAA+GGG 0.431866 3_2:-55873452 None:intergenic
GGTGGTTAGGTCCCGAGGTG+TGG 0.434983 3_2:+55873216 Msa0412470:CDS
TGCTTAATCAGCAGTTGAGT+GGG 0.435663 3_2:+55874416 Msa0412470:three_prime_UTR
AGGATTGTGATAGGACTCTT+TGG 0.436041 3_2:+55873394 Msa0412470:CDS
TTCTAGTGGGTGTGGAGAAA+GGG 0.438917 3_2:+55874539 Msa0412470:three_prime_UTR
GGGTTTGATAATTCATCCAT+TGG 0.447035 3_2:+55872896 Msa0412470:five_prime_UTR
TTGTGTTGAAAGACTGGTAA+AGG 0.449776 3_2:+55874504 Msa0412470:three_prime_UTR
GTGGTTAGGTCCCGAGGTGT+GGG 0.453738 3_2:+55873217 Msa0412470:CDS
ACATTGGCAGACGCCGTGGC+TGG 0.454530 3_2:+55874024 Msa0412470:intron
TGGAAATCCAGTTGGGAAGC+TGG 0.456366 3_2:+55873366 Msa0412470:CDS
TGTTAGGTTGATTGAATCAC+AGG 0.461699 3_2:+55874093 Msa0412470:CDS
CTAAAAGAAGCATCTCCGTC+GGG 0.471283 3_2:+55873194 Msa0412470:CDS
AGCCCTTCTCACCGGTGGAA+AGG 0.480339 3_2:-55873453 None:intergenic
TATACATTGTGTTGAAAGAC+TGG 0.481340 3_2:+55874498 Msa0412470:three_prime_UTR
GGTTTGATAATTCATCCATT+GGG 0.481595 3_2:+55872897 Msa0412470:five_prime_UTR
AACTTCCGTGCCCTTTCCAC+CGG 0.482955 3_2:+55873442 Msa0412470:CDS
TTGCGCGTGCGTTAAAATTG+AGG 0.483723 3_2:-55872955 None:intergenic
GCCCTTTCCACCGGTGAGAA+GGG 0.484178 3_2:+55873451 Msa0412470:CDS
TGTCCATGCCTTCCAAAACT+TGG 0.486542 3_2:-55874069 None:intergenic
ATCAAGGACTTCATGATTCA+AGG 0.494593 3_2:+55873508 Msa0412470:CDS
TTTCTAATATCAATGTCTCT+TGG 0.498054 3_2:-55874371 None:intergenic
CATGCTAACAGCTCCTGGTC+CGG 0.506814 3_2:-55873864 None:intergenic
ATGCTGGTCCCAACACCAAT+GGG 0.515041 3_2:+55873891 Msa0412470:CDS
CACCTTCCATCGCGTCATCA+AGG 0.515078 3_2:+55873492 Msa0412470:CDS
GTTAGTATTGGAAATCCAGT+TGG 0.515418 3_2:+55873358 Msa0412470:CDS
TTCGGTGTTTAACCAACCGA+TGG 0.517897 3_2:+55872997 Msa0412470:exon
GGGGTTGAGGTGTGCACAGT+TGG 0.519233 3_2:+55874588 Msa0412470:intron
CTGATTGTCACCTTCTTTAG+GGG 0.526723 3_2:-55874136 None:intergenic
CGGAAGTTCTCAACAGTTTG+CGG 0.530427 3_2:-55873427 None:intergenic
TTTGCCATGCTAACAGCTCC+TGG 0.534982 3_2:-55873869 None:intergenic
TGTGTTGAAAGACTGGTAAA+GGG 0.536640 3_2:+55874505 Msa0412470:three_prime_UTR
GCTGTTAGCATGGCAAATGC+TGG 0.538859 3_2:+55873875 Msa0412470:CDS
TAGTTTCACACCCACACCTC+GGG 0.541866 3_2:-55873227 None:intergenic
AGCAATTGTTCTAGTGGGTG+TGG 0.544753 3_2:+55874531 Msa0412470:three_prime_UTR
TGGTTAAACACCGAAGAAGA+AGG 0.547719 3_2:-55872989 None:intergenic
TCAGTGTCTCATACCGGACC+AGG 0.547850 3_2:+55873851 Msa0412470:intron
AATGCTGGTCCCAACACCAA+TGG 0.549301 3_2:+55873890 Msa0412470:CDS
AGACGCCGTGGCTGGATCAG+AGG 0.549918 3_2:+55874032 Msa0412470:intron
CAGTTGGGAAGCTGGTTGGA+AGG 0.554098 3_2:+55873374 Msa0412470:CDS
CACCGAAGAAGAAGGAAGGA+AGG 0.554438 3_2:-55872981 None:intergenic
TTAGTATTGGAAATCCAGTT+GGG 0.555401 3_2:+55873359 Msa0412470:CDS
CTTGATGACGCGATGGAAGG+TGG 0.555450 3_2:-55873491 None:intergenic
CTGGTTGGAAGGATTGTGAT+AGG 0.560590 3_2:+55873385 Msa0412470:CDS
AAACTGACTCCCATTGGTGT+TGG 0.561474 3_2:-55873900 None:intergenic
TGGTGATCGTCCCCTAAAGA+AGG 0.561937 3_2:+55874126 Msa0412470:CDS
TTGCTTAATCAGCAGTTGAG+TGG 0.562436 3_2:+55874415 Msa0412470:three_prime_UTR
AATCCAGTTGGGAAGCTGGT+TGG 0.562899 3_2:+55873370 Msa0412470:CDS
GTCGGGGTGGTTAGGTCCCG+AGG 0.565995 3_2:+55873211 Msa0412470:CDS
CATAAATCTAAATCAGTTTG+GGG 0.574747 3_2:+55874317 Msa0412470:three_prime_UTR
GGGGTGAGCAATTGTTCTAG+TGG 0.575296 3_2:+55874525 Msa0412470:three_prime_UTR
ATGCAGCAGCAGCCATCGGT+TGG 0.576471 3_2:-55873009 None:intergenic
GCCAAAGCCCTTCTCACCGG+TGG 0.577439 3_2:-55873458 None:intergenic
TCTCACCGGTGGAAAGGGCA+CGG 0.594226 3_2:-55873447 None:intergenic
GTAGCCAAAGCCCTTCTCAC+CGG 0.594772 3_2:-55873461 None:intergenic
GGAAAATGGTAGTAGTTCAG+AGG 0.600784 3_2:+55873288 Msa0412470:CDS
TATATTACCAGTGAGAAAAG+TGG 0.601545 3_2:-55873052 None:intergenic
CGGACCAGGAGCTGTTAGCA+TGG 0.603520 3_2:+55873865 Msa0412470:CDS
TCTATTCAACTCAAACCCAA+TGG 0.605314 3_2:-55872912 None:intergenic
CCTAAAAGAAGCATCTCCGT+CGG 0.606730 3_2:+55873193 Msa0412470:CDS
GGGTGAGCAATTGTTCTAGT+GGG 0.606774 3_2:+55874526 Msa0412470:three_prime_UTR
CGCGTGCGTTAAAATTGAGG+AGG 0.607321 3_2:-55872952 None:intergenic
ATATCTTCAGTGTCTCATAC+CGG 0.611183 3_2:+55873845 Msa0412470:intron
ACAAGTGAAAGTGAGGGCAG+TGG 0.614839 3_2:+55873267 Msa0412470:CDS
TTGAATGCAGCAGCAGCCAT+CGG 0.616311 3_2:-55873013 None:intergenic
CTAGTTTCACACCCACACCT+CGG 0.617486 3_2:-55873228 None:intergenic
TACGACGACAAGTGAAAGTG+AGG 0.618754 3_2:+55873260 Msa0412470:CDS
CATGACATTGGCAGACGCCG+TGG 0.622061 3_2:+55874020 Msa0412470:intron
GTCCTTGATGACGCGATGGA+AGG 0.624852 3_2:-55873494 None:intergenic
TGAAGTCCTTGATGACGCGA+TGG 0.626809 3_2:-55873498 None:intergenic
GATGACGCGATGGAAGGTGG+AGG 0.631465 3_2:-55873488 None:intergenic
GTGGGTGTGAAACTAGCAGT+AGG 0.631670 3_2:+55873235 Msa0412470:CDS
TTATAAGGTCTATAATAATG+GGG 0.634734 3_2:+55872876 Msa0412470:five_prime_UTR
TATCTATCGCAGGGAACTGG+AGG 0.635120 3_2:+55873614 Msa0412470:intron
GCTTAATCAGCAGTTGAGTG+GGG 0.643968 3_2:+55874417 Msa0412470:three_prime_UTR
TAAACACCGAAGAAGAAGGA+AGG 0.644337 3_2:-55872985 None:intergenic
GAATCACAGGAGACTGATCG+TGG 0.655138 3_2:+55874106 Msa0412470:CDS
TCGGGACCTAACCACCCCGA+CGG 0.658560 3_2:-55873209 None:intergenic
AAGAAGCATCTCCGTCGGGG+TGG 0.659605 3_2:+55873198 Msa0412470:CDS
ACATGCCTCTGATCCAGCCA+CGG 0.671333 3_2:-55874037 None:intergenic
AAGGTGACAATCAGTGACTG+TGG 0.689468 3_2:+55874145 Msa0412470:CDS
ATTACCAGTGAGAAAAGTGG+CGG 0.690058 3_2:-55873049 None:intergenic
TAAAAGAAGCATCTCCGTCG+GGG 0.693386 3_2:+55873195 Msa0412470:CDS
ACGACGACAAGTGAAAGTGA+GGG 0.708194 3_2:+55873261 Msa0412470:CDS
GTGTTGAAAGACTGGTAAAG+GGG 0.712385 3_2:+55874506 Msa0412470:three_prime_UTR
AAGGACTTCATGATTCAAGG+AGG 0.745105 3_2:+55873511 Msa0412470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTGATAAATAAAAAAA+AGG - chr3_2:55873588-55873607 None:intergenic 10.0%
!!! TAAGTTGATAAATAAAAAAA+AGG - chr3_2:55873588-55873607 None:intergenic 10.0%
!!! TTTTGTTTTATTTTGATTAG+TGG + chr3_2:55872842-55872861 Msa0412470:five_prime_UTR 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - chr3_2:55873092-55873111 None:intergenic 15.0%
!! TATTAATTGATTAATTGTCT+TGG + chr3_2:55873125-55873144 Msa0412470:intron 15.0%
!! TTGATAAATAAAAAAAAGGA+AGG - chr3_2:55873584-55873603 None:intergenic 15.0%
!!! ATTTTAGTTTAGTTTAGTTT+AGG + chr3_2:55873769-55873788 Msa0412470:intron 15.0%
!!! TTTTGTTTTATTTTGATTAG+TGG + chr3_2:55872842-55872861 Msa0412470:five_prime_UTR 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - chr3_2:55873092-55873111 None:intergenic 15.0%
!! TATTAATTGATTAATTGTCT+TGG + chr3_2:55873125-55873144 Msa0412470:intron 15.0%
!! TTGATAAATAAAAAAAAGGA+AGG - chr3_2:55873584-55873603 None:intergenic 15.0%
!!! ATTTTAGTTTAGTTTAGTTT+AGG + chr3_2:55873769-55873788 Msa0412470:intron 15.0%
!! TGTTATAAGGTCTATAATAA+TGG + chr3_2:55872874-55872893 Msa0412470:five_prime_UTR 20.0%
!! GTTATAAGGTCTATAATAAT+GGG + chr3_2:55872875-55872894 Msa0412470:five_prime_UTR 20.0%
!! TTATAAGGTCTATAATAATG+GGG + chr3_2:55872876-55872895 Msa0412470:five_prime_UTR 20.0%
!! AATAAAATAAACACAGTGAA+GGG - chr3_2:55873752-55873771 None:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - chr3_2:55873753-55873772 None:intergenic 20.0%
!!! TACTTTTAATTCTCTCTTAT+CGG + chr3_2:55873956-55873975 Msa0412470:intron 20.0%
!!! AATTTTTTGTTTTGTATGCA+TGG + chr3_2:55874257-55874276 Msa0412470:three_prime_UTR 20.0%
!!! ATTTTTTGTTTTGTATGCAT+GGG + chr3_2:55874258-55874277 Msa0412470:three_prime_UTR 20.0%
!! TTCATAAATCTAAATCAGTT+TGG + chr3_2:55874315-55874334 Msa0412470:three_prime_UTR 20.0%
!! TCATAAATCTAAATCAGTTT+GGG + chr3_2:55874316-55874335 Msa0412470:three_prime_UTR 20.0%
!!! AAATGAGTTTAAGTTATTCT+AGG - chr3_2:55874397-55874416 None:intergenic 20.0%
!! TGTTATAAGGTCTATAATAA+TGG + chr3_2:55872874-55872893 Msa0412470:five_prime_UTR 20.0%
!! GTTATAAGGTCTATAATAAT+GGG + chr3_2:55872875-55872894 Msa0412470:five_prime_UTR 20.0%
!! TTATAAGGTCTATAATAATG+GGG + chr3_2:55872876-55872895 Msa0412470:five_prime_UTR 20.0%
!! AATAAAATAAACACAGTGAA+GGG - chr3_2:55873752-55873771 None:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - chr3_2:55873753-55873772 None:intergenic 20.0%
!!! TACTTTTAATTCTCTCTTAT+CGG + chr3_2:55873956-55873975 Msa0412470:intron 20.0%
!!! AATTTTTTGTTTTGTATGCA+TGG + chr3_2:55874257-55874276 Msa0412470:three_prime_UTR 20.0%
!!! ATTTTTTGTTTTGTATGCAT+GGG + chr3_2:55874258-55874277 Msa0412470:three_prime_UTR 20.0%
!! TTCATAAATCTAAATCAGTT+TGG + chr3_2:55874315-55874334 Msa0412470:three_prime_UTR 20.0%
!! TCATAAATCTAAATCAGTTT+GGG + chr3_2:55874316-55874335 Msa0412470:three_prime_UTR 20.0%
!!! AAATGAGTTTAAGTTATTCT+AGG - chr3_2:55874397-55874416 None:intergenic 20.0%
!!! TTGAGTTGAATAGATAGATT+AGG + chr3_2:55872921-55872940 Msa0412470:five_prime_UTR 25.0%
! AATTGATTAATTGTCTTGGT+TGG + chr3_2:55873129-55873148 Msa0412470:intron 25.0%
! ATTGATTAATTGTCTTGGTT+GGG + chr3_2:55873130-55873149 Msa0412470:intron 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + chr3_2:55873346-55873365 Msa0412470:CDS 25.0%
! ATAAAATAAACACAGTGAAG+GGG - chr3_2:55873751-55873770 None:intergenic 25.0%
! AAAACAAAAAATTGAGAGAG+CGG - chr3_2:55874250-55874269 None:intergenic 25.0%
! CATAAATCTAAATCAGTTTG+GGG + chr3_2:55874317-55874336 Msa0412470:three_prime_UTR 25.0%
! TTTCTAATATCAATGTCTCT+TGG - chr3_2:55874374-55874393 None:intergenic 25.0%
!!! TTGAGTTGAATAGATAGATT+AGG + chr3_2:55872921-55872940 Msa0412470:five_prime_UTR 25.0%
! AATTGATTAATTGTCTTGGT+TGG + chr3_2:55873129-55873148 Msa0412470:intron 25.0%
! ATTGATTAATTGTCTTGGTT+GGG + chr3_2:55873130-55873149 Msa0412470:intron 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + chr3_2:55873346-55873365 Msa0412470:CDS 25.0%
! ATAAAATAAACACAGTGAAG+GGG - chr3_2:55873751-55873770 None:intergenic 25.0%
! AAAACAAAAAATTGAGAGAG+CGG - chr3_2:55874250-55874269 None:intergenic 25.0%
! CATAAATCTAAATCAGTTTG+GGG + chr3_2:55874317-55874336 Msa0412470:three_prime_UTR 25.0%
! TTTCTAATATCAATGTCTCT+TGG - chr3_2:55874374-55874393 None:intergenic 25.0%
! GGTTTGATAATTCATCCATT+GGG + chr3_2:55872897-55872916 Msa0412470:five_prime_UTR 30.0%
TATATTACCAGTGAGAAAAG+TGG - chr3_2:55873055-55873074 None:intergenic 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + chr3_2:55873359-55873378 Msa0412470:CDS 30.0%
TTATCTATCTATCTATCGCA+GGG + chr3_2:55873605-55873624 Msa0412470:intron 30.0%
TAAAATAAACACAGTGAAGG+GGG - chr3_2:55873750-55873769 None:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + chr3_2:55874008-55874027 Msa0412470:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - chr3_2:55874178-55874197 None:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + chr3_2:55874184-55874203 Msa0412470:exon 30.0%
TATACATTGTGTTGAAAGAC+TGG + chr3_2:55874498-55874517 Msa0412470:three_prime_UTR 30.0%
ATGGTGAAGGACTATATATA+AGG + chr3_2:55874567-55874586 Msa0412470:intron 30.0%
TGGTGAAGGACTATATATAA+GGG + chr3_2:55874568-55874587 Msa0412470:intron 30.0%
! GGTTTGATAATTCATCCATT+GGG + chr3_2:55872897-55872916 Msa0412470:five_prime_UTR 30.0%
TATATTACCAGTGAGAAAAG+TGG - chr3_2:55873055-55873074 None:intergenic 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + chr3_2:55873359-55873378 Msa0412470:CDS 30.0%
TTATCTATCTATCTATCGCA+GGG + chr3_2:55873605-55873624 Msa0412470:intron 30.0%
TAAAATAAACACAGTGAAGG+GGG - chr3_2:55873750-55873769 None:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + chr3_2:55874008-55874027 Msa0412470:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - chr3_2:55874178-55874197 None:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + chr3_2:55874184-55874203 Msa0412470:exon 30.0%
TATACATTGTGTTGAAAGAC+TGG + chr3_2:55874498-55874517 Msa0412470:three_prime_UTR 30.0%
ATGGTGAAGGACTATATATA+AGG + chr3_2:55874567-55874586 Msa0412470:intron 30.0%
TGGTGAAGGACTATATATAA+GGG + chr3_2:55874568-55874587 Msa0412470:intron 30.0%
! GTGGATTGAGTAGTGTTATA+AGG + chr3_2:55872861-55872880 Msa0412470:five_prime_UTR 35.0%
! GGGTTTGATAATTCATCCAT+TGG + chr3_2:55872896-55872915 Msa0412470:five_prime_UTR 35.0%
TCTATTCAACTCAAACCCAA+TGG - chr3_2:55872915-55872934 None:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGATT+AGG - chr3_2:55873184-55873203 None:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + chr3_2:55873358-55873377 Msa0412470:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + chr3_2:55873508-55873527 Msa0412470:CDS 35.0%
CTTATCTATCTATCTATCGC+AGG + chr3_2:55873604-55873623 Msa0412470:intron 35.0%
ATATCTTCAGTGTCTCATAC+CGG + chr3_2:55873845-55873864 Msa0412470:intron 35.0%
! TATGAAAAACTGACTCCCAT+TGG - chr3_2:55873909-55873928 None:intergenic 35.0%
! GTTTTTCATATGCACTGTCA+AGG + chr3_2:55873919-55873938 Msa0412470:CDS 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + chr3_2:55874057-55874076 Msa0412470:CDS 35.0%
!! TGTTAGGTTGATTGAATCAC+AGG + chr3_2:55874093-55874112 Msa0412470:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - chr3_2:55874140-55874159 None:intergenic 35.0%
TTGTGTTGAAAGACTGGTAA+AGG + chr3_2:55874504-55874523 Msa0412470:three_prime_UTR 35.0%
TGTGTTGAAAGACTGGTAAA+GGG + chr3_2:55874505-55874524 Msa0412470:three_prime_UTR 35.0%
GGTGAAGGACTATATATAAG+GGG + chr3_2:55874569-55874588 Msa0412470:intron 35.0%
! GTGGATTGAGTAGTGTTATA+AGG + chr3_2:55872861-55872880 Msa0412470:five_prime_UTR 35.0%
! GGGTTTGATAATTCATCCAT+TGG + chr3_2:55872896-55872915 Msa0412470:five_prime_UTR 35.0%
TCTATTCAACTCAAACCCAA+TGG - chr3_2:55872915-55872934 None:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGATT+AGG - chr3_2:55873184-55873203 None:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + chr3_2:55873358-55873377 Msa0412470:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + chr3_2:55873508-55873527 Msa0412470:CDS 35.0%
CTTATCTATCTATCTATCGC+AGG + chr3_2:55873604-55873623 Msa0412470:intron 35.0%
ATATCTTCAGTGTCTCATAC+CGG + chr3_2:55873845-55873864 Msa0412470:intron 35.0%
! TATGAAAAACTGACTCCCAT+TGG - chr3_2:55873909-55873928 None:intergenic 35.0%
! GTTTTTCATATGCACTGTCA+AGG + chr3_2:55873919-55873938 Msa0412470:CDS 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + chr3_2:55874057-55874076 Msa0412470:CDS 35.0%
!! TGTTAGGTTGATTGAATCAC+AGG + chr3_2:55874093-55874112 Msa0412470:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - chr3_2:55874140-55874159 None:intergenic 35.0%
TTGTGTTGAAAGACTGGTAA+AGG + chr3_2:55874504-55874523 Msa0412470:three_prime_UTR 35.0%
TGTGTTGAAAGACTGGTAAA+GGG + chr3_2:55874505-55874524 Msa0412470:three_prime_UTR 35.0%
GGTGAAGGACTATATATAAG+GGG + chr3_2:55874569-55874588 Msa0412470:intron 35.0%
ATCCTTCCTTCCTTCTTCTT+CGG + chr3_2:55872979-55872998 Msa0412470:five_prime_UTR 40.0%
TAAACACCGAAGAAGAAGGA+AGG - chr3_2:55872988-55873007 None:intergenic 40.0%
TGGTTAAACACCGAAGAAGA+AGG - chr3_2:55872992-55873011 None:intergenic 40.0%
ATTACCAGTGAGAAAAGTGG+CGG - chr3_2:55873052-55873071 None:intergenic 40.0%
GATTAATTGTCTTGGTTGGG+TGG + chr3_2:55873133-55873152 Msa0412470:intron 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - chr3_2:55873190-55873209 None:intergenic 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + chr3_2:55873288-55873307 Msa0412470:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + chr3_2:55873394-55873413 Msa0412470:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + chr3_2:55873511-55873530 Msa0412470:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + chr3_2:55873526-55873545 Msa0412470:CDS 40.0%
!! ACTGGAGGCAAAAGTATCTA+TGG + chr3_2:55873629-55873648 Msa0412470:CDS 40.0%
! GATCAGAGGCATGTTGTATT+TGG + chr3_2:55874046-55874065 Msa0412470:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + chr3_2:55874061-55874080 Msa0412470:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - chr3_2:55874139-55874158 None:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - chr3_2:55874141-55874160 None:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + chr3_2:55874210-55874229 Msa0412470:three_prime_UTR 40.0%
! TGTTTTGTATGCATGGGTTC+TGG + chr3_2:55874264-55874283 Msa0412470:three_prime_UTR 40.0%
TTGCTTAATCAGCAGTTGAG+TGG + chr3_2:55874415-55874434 Msa0412470:three_prime_UTR 40.0%
TGCTTAATCAGCAGTTGAGT+GGG + chr3_2:55874416-55874435 Msa0412470:three_prime_UTR 40.0%
GTGTTGAAAGACTGGTAAAG+GGG + chr3_2:55874506-55874525 Msa0412470:three_prime_UTR 40.0%
AGAAAGGGAGTTAATGGTGA+AGG + chr3_2:55874554-55874573 Msa0412470:intron 40.0%
GGACTATATATAAGGGGTTG+AGG + chr3_2:55874575-55874594 Msa0412470:intron 40.0%
ATCCTTCCTTCCTTCTTCTT+CGG + chr3_2:55872979-55872998 Msa0412470:five_prime_UTR 40.0%
TAAACACCGAAGAAGAAGGA+AGG - chr3_2:55872988-55873007 None:intergenic 40.0%
TGGTTAAACACCGAAGAAGA+AGG - chr3_2:55872992-55873011 None:intergenic 40.0%
ATTACCAGTGAGAAAAGTGG+CGG - chr3_2:55873052-55873071 None:intergenic 40.0%
GATTAATTGTCTTGGTTGGG+TGG + chr3_2:55873133-55873152 Msa0412470:intron 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - chr3_2:55873190-55873209 None:intergenic 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + chr3_2:55873288-55873307 Msa0412470:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + chr3_2:55873394-55873413 Msa0412470:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + chr3_2:55873511-55873530 Msa0412470:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + chr3_2:55873526-55873545 Msa0412470:CDS 40.0%
!! ACTGGAGGCAAAAGTATCTA+TGG + chr3_2:55873629-55873648 Msa0412470:CDS 40.0%
! GATCAGAGGCATGTTGTATT+TGG + chr3_2:55874046-55874065 Msa0412470:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + chr3_2:55874061-55874080 Msa0412470:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - chr3_2:55874139-55874158 None:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - chr3_2:55874141-55874160 None:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + chr3_2:55874210-55874229 Msa0412470:three_prime_UTR 40.0%
! TGTTTTGTATGCATGGGTTC+TGG + chr3_2:55874264-55874283 Msa0412470:three_prime_UTR 40.0%
TTGCTTAATCAGCAGTTGAG+TGG + chr3_2:55874415-55874434 Msa0412470:three_prime_UTR 40.0%
TGCTTAATCAGCAGTTGAGT+GGG + chr3_2:55874416-55874435 Msa0412470:three_prime_UTR 40.0%
GTGTTGAAAGACTGGTAAAG+GGG + chr3_2:55874506-55874525 Msa0412470:three_prime_UTR 40.0%
AGAAAGGGAGTTAATGGTGA+AGG + chr3_2:55874554-55874573 Msa0412470:intron 40.0%
GGACTATATATAAGGGGTTG+AGG + chr3_2:55874575-55874594 Msa0412470:intron 40.0%
TTGCGCGTGCGTTAAAATTG+AGG - chr3_2:55872958-55872977 None:intergenic 45.0%
!! TTCGGTGTTTAACCAACCGA+TGG + chr3_2:55872997-55873016 Msa0412470:exon 45.0%
! CGACGGAGATGCTTCTTTTA+GGG - chr3_2:55873195-55873214 None:intergenic 45.0%
!! CCTAAAAGAAGCATCTCCGT+CGG + chr3_2:55873193-55873212 Msa0412470:CDS 45.0%
!! CTAAAAGAAGCATCTCCGTC+GGG + chr3_2:55873194-55873213 Msa0412470:CDS 45.0%
!! TAAAAGAAGCATCTCCGTCG+GGG + chr3_2:55873195-55873214 Msa0412470:CDS 45.0%
TACGACGACAAGTGAAAGTG+AGG + chr3_2:55873260-55873279 Msa0412470:CDS 45.0%
ACGACGACAAGTGAAAGTGA+GGG + chr3_2:55873261-55873280 Msa0412470:CDS 45.0%
AAAGTGAGGGCAGTGGAAAA+TGG + chr3_2:55873274-55873293 Msa0412470:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + chr3_2:55873385-55873404 Msa0412470:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - chr3_2:55873429-55873448 None:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - chr3_2:55873430-55873449 None:intergenic 45.0%
ATCTATCTATCGCAGGGAAC+TGG + chr3_2:55873611-55873630 Msa0412470:intron 45.0%
! AACTGACTCCCATTGGTGTT+GGG - chr3_2:55873902-55873921 None:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - chr3_2:55873903-55873922 None:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - chr3_2:55874072-55874091 None:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + chr3_2:55874077-55874096 Msa0412470:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + chr3_2:55874145-55874164 Msa0412470:CDS 45.0%
GCTTAATCAGCAGTTGAGTG+GGG + chr3_2:55874417-55874436 Msa0412470:three_prime_UTR 45.0%
GGGTGAGCAATTGTTCTAGT+GGG + chr3_2:55874526-55874545 Msa0412470:three_prime_UTR 45.0%
! AGCAATTGTTCTAGTGGGTG+TGG + chr3_2:55874531-55874550 Msa0412470:three_prime_UTR 45.0%
! TTCTAGTGGGTGTGGAGAAA+GGG + chr3_2:55874539-55874558 Msa0412470:three_prime_UTR 45.0%
GTGTGGAGAAAGGGAGTTAA+TGG + chr3_2:55874548-55874567 Msa0412470:three_prime_UTR 45.0%
TTGCGCGTGCGTTAAAATTG+AGG - chr3_2:55872958-55872977 None:intergenic 45.0%
!! TTCGGTGTTTAACCAACCGA+TGG + chr3_2:55872997-55873016 Msa0412470:exon 45.0%
! CGACGGAGATGCTTCTTTTA+GGG - chr3_2:55873195-55873214 None:intergenic 45.0%
!! CCTAAAAGAAGCATCTCCGT+CGG + chr3_2:55873193-55873212 Msa0412470:CDS 45.0%
!! CTAAAAGAAGCATCTCCGTC+GGG + chr3_2:55873194-55873213 Msa0412470:CDS 45.0%
!! TAAAAGAAGCATCTCCGTCG+GGG + chr3_2:55873195-55873214 Msa0412470:CDS 45.0%
TACGACGACAAGTGAAAGTG+AGG + chr3_2:55873260-55873279 Msa0412470:CDS 45.0%
ACGACGACAAGTGAAAGTGA+GGG + chr3_2:55873261-55873280 Msa0412470:CDS 45.0%
AAAGTGAGGGCAGTGGAAAA+TGG + chr3_2:55873274-55873293 Msa0412470:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + chr3_2:55873385-55873404 Msa0412470:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - chr3_2:55873429-55873448 None:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - chr3_2:55873430-55873449 None:intergenic 45.0%
ATCTATCTATCGCAGGGAAC+TGG + chr3_2:55873611-55873630 Msa0412470:intron 45.0%
! AACTGACTCCCATTGGTGTT+GGG - chr3_2:55873902-55873921 None:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - chr3_2:55873903-55873922 None:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - chr3_2:55874072-55874091 None:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + chr3_2:55874077-55874096 Msa0412470:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + chr3_2:55874145-55874164 Msa0412470:CDS 45.0%
GCTTAATCAGCAGTTGAGTG+GGG + chr3_2:55874417-55874436 Msa0412470:three_prime_UTR 45.0%
GGGTGAGCAATTGTTCTAGT+GGG + chr3_2:55874526-55874545 Msa0412470:three_prime_UTR 45.0%
! AGCAATTGTTCTAGTGGGTG+TGG + chr3_2:55874531-55874550 Msa0412470:three_prime_UTR 45.0%
! TTCTAGTGGGTGTGGAGAAA+GGG + chr3_2:55874539-55874558 Msa0412470:three_prime_UTR 45.0%
GTGTGGAGAAAGGGAGTTAA+TGG + chr3_2:55874548-55874567 Msa0412470:three_prime_UTR 45.0%
CGCGTGCGTTAAAATTGAGG+AGG - chr3_2:55872955-55872974 None:intergenic 50.0%
CACCGAAGAAGAAGGAAGGA+AGG - chr3_2:55872984-55873003 None:intergenic 50.0%
TTGAATGCAGCAGCAGCCAT+CGG - chr3_2:55873016-55873035 None:intergenic 50.0%
!!! AACACCGCCACTTTTCTCAC+TGG + chr3_2:55873045-55873064 Msa0412470:CDS 50.0%
! CCGACGGAGATGCTTCTTTT+AGG - chr3_2:55873196-55873215 None:intergenic 50.0%
TAGTTTCACACCCACACCTC+GGG - chr3_2:55873230-55873249 None:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - chr3_2:55873231-55873250 None:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + chr3_2:55873235-55873254 Msa0412470:CDS 50.0%
ACAAGTGAAAGTGAGGGCAG+TGG + chr3_2:55873267-55873286 Msa0412470:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + chr3_2:55873366-55873385 Msa0412470:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + chr3_2:55873370-55873389 Msa0412470:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - chr3_2:55873501-55873520 None:intergenic 50.0%
TATCTATCGCAGGGAACTGG+AGG + chr3_2:55873614-55873633 Msa0412470:intron 50.0%
TTTGCCATGCTAACAGCTCC+TGG - chr3_2:55873872-55873891 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + chr3_2:55873875-55873894 Msa0412470:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + chr3_2:55873890-55873909 Msa0412470:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + chr3_2:55873891-55873910 Msa0412470:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + chr3_2:55874066-55874085 Msa0412470:CDS 50.0%
GAATCACAGGAGACTGATCG+TGG + chr3_2:55874106-55874125 Msa0412470:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + chr3_2:55874126-55874145 Msa0412470:CDS 50.0%
GGGGTGAGCAATTGTTCTAG+TGG + chr3_2:55874525-55874544 Msa0412470:three_prime_UTR 50.0%
! GTTCTAGTGGGTGTGGAGAA+AGG + chr3_2:55874538-55874557 Msa0412470:three_prime_UTR 50.0%
CGCGTGCGTTAAAATTGAGG+AGG - chr3_2:55872955-55872974 None:intergenic 50.0%
CACCGAAGAAGAAGGAAGGA+AGG - chr3_2:55872984-55873003 None:intergenic 50.0%
TTGAATGCAGCAGCAGCCAT+CGG - chr3_2:55873016-55873035 None:intergenic 50.0%
!!! AACACCGCCACTTTTCTCAC+TGG + chr3_2:55873045-55873064 Msa0412470:CDS 50.0%
! CCGACGGAGATGCTTCTTTT+AGG - chr3_2:55873196-55873215 None:intergenic 50.0%
TAGTTTCACACCCACACCTC+GGG - chr3_2:55873230-55873249 None:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - chr3_2:55873231-55873250 None:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + chr3_2:55873235-55873254 Msa0412470:CDS 50.0%
ACAAGTGAAAGTGAGGGCAG+TGG + chr3_2:55873267-55873286 Msa0412470:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + chr3_2:55873366-55873385 Msa0412470:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + chr3_2:55873370-55873389 Msa0412470:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - chr3_2:55873501-55873520 None:intergenic 50.0%
TATCTATCGCAGGGAACTGG+AGG + chr3_2:55873614-55873633 Msa0412470:intron 50.0%
TTTGCCATGCTAACAGCTCC+TGG - chr3_2:55873872-55873891 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + chr3_2:55873875-55873894 Msa0412470:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + chr3_2:55873890-55873909 Msa0412470:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + chr3_2:55873891-55873910 Msa0412470:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + chr3_2:55874066-55874085 Msa0412470:CDS 50.0%
GAATCACAGGAGACTGATCG+TGG + chr3_2:55874106-55874125 Msa0412470:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + chr3_2:55874126-55874145 Msa0412470:CDS 50.0%
GGGGTGAGCAATTGTTCTAG+TGG + chr3_2:55874525-55874544 Msa0412470:three_prime_UTR 50.0%
! GTTCTAGTGGGTGTGGAGAA+AGG + chr3_2:55874538-55874557 Msa0412470:three_prime_UTR 50.0%
CTTCCAACCAGCTTCCCAAC+TGG - chr3_2:55873376-55873395 None:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + chr3_2:55873374-55873393 Msa0412470:CDS 55.0%
AACTTCCGTGCCCTTTCCAC+CGG + chr3_2:55873442-55873461 Msa0412470:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+CGG - chr3_2:55873464-55873483 None:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - chr3_2:55873494-55873513 None:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + chr3_2:55873492-55873511 Msa0412470:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - chr3_2:55873497-55873516 None:intergenic 55.0%
TCAGTGTCTCATACCGGACC+AGG + chr3_2:55873851-55873870 Msa0412470:intron 55.0%
CATGCTAACAGCTCCTGGTC+CGG - chr3_2:55873867-55873886 None:intergenic 55.0%
ACATGCCTCTGATCCAGCCA+CGG - chr3_2:55874040-55874059 None:intergenic 55.0%
CTTCCAACCAGCTTCCCAAC+TGG - chr3_2:55873376-55873395 None:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + chr3_2:55873374-55873393 Msa0412470:CDS 55.0%
AACTTCCGTGCCCTTTCCAC+CGG + chr3_2:55873442-55873461 Msa0412470:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+CGG - chr3_2:55873464-55873483 None:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - chr3_2:55873494-55873513 None:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + chr3_2:55873492-55873511 Msa0412470:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - chr3_2:55873497-55873516 None:intergenic 55.0%
TCAGTGTCTCATACCGGACC+AGG + chr3_2:55873851-55873870 Msa0412470:intron 55.0%
CATGCTAACAGCTCCTGGTC+CGG - chr3_2:55873867-55873886 None:intergenic 55.0%
ACATGCCTCTGATCCAGCCA+CGG - chr3_2:55874040-55874059 None:intergenic 55.0%
ATGCAGCAGCAGCCATCGGT+TGG - chr3_2:55873012-55873031 None:intergenic 60.0%
!! AAGAAGCATCTCCGTCGGGG+TGG + chr3_2:55873198-55873217 Msa0412470:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + chr3_2:55873217-55873236 Msa0412470:CDS 60.0%
TCTCACCGGTGGAAAGGGCA+CGG - chr3_2:55873450-55873469 None:intergenic 60.0%
TGCCCTTTCCACCGGTGAGA+AGG + chr3_2:55873450-55873469 Msa0412470:CDS 60.0%
GCCCTTTCCACCGGTGAGAA+GGG + chr3_2:55873451-55873470 Msa0412470:CDS 60.0%
GCCCTTCTCACCGGTGGAAA+GGG - chr3_2:55873455-55873474 None:intergenic 60.0%
AGCCCTTCTCACCGGTGGAA+AGG - chr3_2:55873456-55873475 None:intergenic 60.0%
TCCACCGGTGAGAAGGGCTT+TGG + chr3_2:55873457-55873476 Msa0412470:CDS 60.0%
GATGACGCGATGGAAGGTGG+AGG - chr3_2:55873491-55873510 None:intergenic 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + chr3_2:55873865-55873884 Msa0412470:CDS 60.0%
CATGACATTGGCAGACGCCG+TGG + chr3_2:55874020-55874039 Msa0412470:intron 60.0%
GGGGTTGAGGTGTGCACAGT+TGG + chr3_2:55874588-55874607 Msa0412470:intron 60.0%
ATGCAGCAGCAGCCATCGGT+TGG - chr3_2:55873012-55873031 None:intergenic 60.0%
!! AAGAAGCATCTCCGTCGGGG+TGG + chr3_2:55873198-55873217 Msa0412470:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + chr3_2:55873217-55873236 Msa0412470:CDS 60.0%
TCTCACCGGTGGAAAGGGCA+CGG - chr3_2:55873450-55873469 None:intergenic 60.0%
TGCCCTTTCCACCGGTGAGA+AGG + chr3_2:55873450-55873469 Msa0412470:CDS 60.0%
GCCCTTTCCACCGGTGAGAA+GGG + chr3_2:55873451-55873470 Msa0412470:CDS 60.0%
GCCCTTCTCACCGGTGGAAA+GGG - chr3_2:55873455-55873474 None:intergenic 60.0%
AGCCCTTCTCACCGGTGGAA+AGG - chr3_2:55873456-55873475 None:intergenic 60.0%
TCCACCGGTGAGAAGGGCTT+TGG + chr3_2:55873457-55873476 Msa0412470:CDS 60.0%
GATGACGCGATGGAAGGTGG+AGG - chr3_2:55873491-55873510 None:intergenic 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + chr3_2:55873865-55873884 Msa0412470:CDS 60.0%
CATGACATTGGCAGACGCCG+TGG + chr3_2:55874020-55874039 Msa0412470:intron 60.0%
GGGGTTGAGGTGTGCACAGT+TGG + chr3_2:55874588-55874607 Msa0412470:intron 60.0%
GCATCTCCGTCGGGGTGGTT+AGG + chr3_2:55873203-55873222 Msa0412470:CDS 65.0%
TCGGGACCTAACCACCCCGA+CGG - chr3_2:55873212-55873231 None:intergenic 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + chr3_2:55873216-55873235 Msa0412470:CDS 65.0%
GCCAAAGCCCTTCTCACCGG+TGG - chr3_2:55873461-55873480 None:intergenic 65.0%
ACATTGGCAGACGCCGTGGC+TGG + chr3_2:55874024-55874043 Msa0412470:intron 65.0%
AGACGCCGTGGCTGGATCAG+AGG + chr3_2:55874032-55874051 Msa0412470:intron 65.0%
GCATCTCCGTCGGGGTGGTT+AGG + chr3_2:55873203-55873222 Msa0412470:CDS 65.0%
TCGGGACCTAACCACCCCGA+CGG - chr3_2:55873212-55873231 None:intergenic 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + chr3_2:55873216-55873235 Msa0412470:CDS 65.0%
GCCAAAGCCCTTCTCACCGG+TGG - chr3_2:55873461-55873480 None:intergenic 65.0%
ACATTGGCAGACGCCGTGGC+TGG + chr3_2:55874024-55874043 Msa0412470:intron 65.0%
AGACGCCGTGGCTGGATCAG+AGG + chr3_2:55874032-55874051 Msa0412470:intron 65.0%
GTCGGGGTGGTTAGGTCCCG+AGG + chr3_2:55873211-55873230 Msa0412470:CDS 70.0%
GTCGGGGTGGTTAGGTCCCG+AGG + chr3_2:55873211-55873230 Msa0412470:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 55872815 55874616 55872815 ID=Msa0412470;Name=Msa0412470
chr3_2 mRNA 55872815 55874616 55872815 ID=Msa0412470-mRNA-1;Parent=Msa0412470;Name=Msa0412470-mRNA-1;_AED=0.39;_eAED=0.39;_QI=201|1|1|1|0.8|0.66|6|409|245
chr3_2 exon 55872815 55873066 55872815 ID=Msa0412470-mRNA-1:exon:11353;Parent=Msa0412470-mRNA-1
chr3_2 exon 55873160 55873552 55873160 ID=Msa0412470-mRNA-1:exon:11354;Parent=Msa0412470-mRNA-1
chr3_2 exon 55873626 55873680 55873626 ID=Msa0412470-mRNA-1:exon:11355;Parent=Msa0412470-mRNA-1
chr3_2 exon 55873855 55873940 55873855 ID=Msa0412470-mRNA-1:exon:11356;Parent=Msa0412470-mRNA-1
chr3_2 exon 55874034 55874569 55874034 ID=Msa0412470-mRNA-1:exon:11357;Parent=Msa0412470-mRNA-1
chr3_2 exon 55874591 55874616 55874591 ID=Msa0412470-mRNA-1:exon:11358;Parent=Msa0412470-mRNA-1
chr3_2 five_prime_UTR 55872815 55873015 55872815 ID=Msa0412470-mRNA-1:five_prime_utr;Parent=Msa0412470-mRNA-1
chr3_2 CDS 55873016 55873066 55873016 ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2 CDS 55873160 55873552 55873160 ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2 CDS 55873626 55873680 55873626 ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2 CDS 55873855 55873940 55873855 ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2 CDS 55874034 55874186 55874034 ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2 three_prime_UTR 55874187 55874569 55874187 ID=Msa0412470-mRNA-1:three_prime_utr;Parent=Msa0412470-mRNA-1
chr3_2 three_prime_UTR 55874591 55874616 55874591 ID=Msa0412470-mRNA-1:three_prime_utr;Parent=Msa0412470-mRNA-1
Gene Sequence

>Msa0412470

ATGGCTGCTGCTGCATTCAATGTTACTACAACACCGCCACTTTTCTCACTGTCAAATGTTGTTGCTCTGAATCCTAATCCTAACCCTAAAAGAAGCATCTCCGTCGGGGTGGTTAGGTCCCGAGGTGTGGGTGTGAAACTAGCAGTAGGAGTACGACGACAAGTGAAAGTGAGGGCAGTGGAAAATGGTAGTAGTTCAGAGGAGAAAGTAATAGTACAGTCAAAAGTGACTCACAAAGTATTCTTTGATGTTAGTATTGGAAATCCAGTTGGGAAGCTGGTTGGAAGGATTGTGATAGGACTCTTTGGTGATGATGTCCCGCAAACTGTTGAGAACTTCCGTGCCCTTTCCACCGGTGAGAAGGGCTTTGGCTACAAGTCCTCCACCTTCCATCGCGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGATAAAGGAAATGGAACTGGAGGCAAAAGTATCTATGGTCGTACTTTCAAAGATGAGAATTTTAATCTGTCTCATACCGGACCAGGAGCTGTTAGCATGGCAAATGCTGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACGCCGTGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCACAGGAGACTGATCGTGGTGATCGTCCCCTAAAGAAGGTGACAATCAGTGACTGTGGCGAGCTTCCAATTGCTTGA
Protein sequence

>Msa0412470

MAAAAFNVTTTPPLFSLSNVVALNPNPNPKRSISVGVVRSRGVGVKLAVGVRRQVKVRAVENGSSSEEKVIVQSKVTHKVFFDVSIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTGEKGFGYKSSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGAVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPLKKVTISDCGELPIA*