AlfalfaGEDB | Msa0412470

M. sativa cultivar zhongmu-4 / Msa0412470

KEGG: K03768
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0140096 GO:1901564
PFAM: PF00160.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412470	XP_013470516.1	97.541	244	4	1	2	245	3	244	3.07e-169	476

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412470	sp\|Q9ASS6\|PNSL5_ARATH	83.237	173	29	0	73	245	85	257	1.49e-110	321

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412470	I3S7Z5	97.541	244	4	1	2	245	3	244	1.47e-169	476

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001420	Msa0412470	0.864399	1.250249e-64	-8.615850e-47
Msa0001510	Msa0412470	0.822332	2.506701e-53	-8.615850e-47
Msa0001540	Msa0412470	0.872159	3.939925e-67	-8.615850e-47
Msa0002060	Msa0412470	0.804750	1.859316e-49	-8.615850e-47
Msa0002690	Msa0412470	0.806049	9.935442e-50	-8.615850e-47
Msa0004180	Msa0412470	0.833743	4.476429e-56	-8.615850e-47
Msa0007570	Msa0412470	0.813092	3.049581e-51	-8.615850e-47
Msa0007930	Msa0412470	0.814599	1.419028e-51	-8.615850e-47
Msa0009210	Msa0412470	0.843552	1.306148e-58	-8.615850e-47
Msa0011910	Msa0412470	0.830182	3.390924e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412470	MtrunA17_Chr1g0213971	97.541	244	4	1	2	245	3	244	2.82e-173	476
Msa0412470	MtrunA17_Chr7g0270991	63.590	195	68	1	50	244	68	259	2.55e-88	262
Msa0412470	MtrunA17_Chr1g0193711	61.905	210	72	3	40	244	43	249	1.47e-86	257
Msa0412470	MtrunA17_Chr3g0104751	61.957	184	59	3	68	244	24	203	1.23e-72	220
Msa0412470	MtrunA17_Chr3g0113441	55.288	208	68	5	56	242	28	231	2.87e-68	210
Msa0412470	MtrunA17_Chr3g0145501	61.404	171	55	3	79	242	13	179	3.67e-68	208
Msa0412470	MtrunA17_Chr7g0274841	59.649	171	58	3	79	242	5	171	9.60e-67	204
Msa0412470	MtrunA17_Chr4g0038431	60.920	174	57	3	76	242	2	171	1.07e-66	204
Msa0412470	MtrunA17_Chr8g0374621	57.558	172	62	2	79	242	5	173	1.99e-61	196
Msa0412470	MtrunA17_Chr4g0037281	49.485	194	89	2	57	243	25	216	1.58e-58	185

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412470	AT5G13120.2	83.237	173	29	0	73	245	81	253	1.17e-111	321
Msa0412470	AT5G13120.1	83.237	173	29	0	73	245	85	257	1.52e-111	321
Msa0412470	AT3G62030.1	66.321	193	61	2	53	244	69	258	8.32e-90	266
Msa0412470	AT3G62030.3	65.625	192	63	1	53	244	69	257	1.19e-89	266
Msa0412470	AT3G62030.2	66.321	193	61	2	53	244	122	311	4.83e-89	266
Msa0412470	AT2G29960.1	62.712	177	55	3	75	244	29	201	4.72e-72	219
Msa0412470	AT2G29960.3	62.712	177	55	3	75	244	29	201	4.72e-72	219
Msa0412470	AT5G58710.1	62.147	177	56	3	75	244	32	204	2.06e-71	217
Msa0412470	AT2G21130.1	62.573	171	53	3	79	242	6	172	1.99e-70	214
Msa0412470	AT2G16600.1	61.988	171	54	3	79	242	6	172	2.53e-69	211

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Find 114 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGACTCCCATTGGTGT+TGG	0.561474	3_2:-55873900	None:intergenic
AAAGTGAGGGCAGTGGAAAA+TGG	0.351843	3_2:+55873274	Msa0412470:CDS
AAATGAGTTTAAGTTATTCT+AGG	0.267655	3_2:-55874394	None:intergenic
AACAAAACATGTCAAGCAAT+TGG	0.393584	3_2:-55874175	None:intergenic
AACTGACTCCCATTGGTGTT+GGG	0.430322	3_2:-55873899	None:intergenic
AACTTCCGTGCCCTTTCCAC+CGG	0.482955	3_2:+55873442	Msa0412470:CDS
AAGAAGCATCTCCGTCGGGG+TGG	0.659605	3_2:+55873198	Msa0412470:CDS
AAGGACTTCATGATTCAAGG+AGG	0.745105	3_2:+55873511	Msa0412470:CDS
AAGGTGACAATCAGTGACTG+TGG	0.689468	3_2:+55874145	Msa0412470:CDS
AATCCAGTTGGGAAGCTGGT+TGG	0.562899	3_2:+55873370	Msa0412470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATTACCAGTGAGAAAAG+TGG	-	chr3_2:55873055-55873074	None:intergenic	30.0%
TTATCTATCTATCTATCGCA+GGG	+	chr3_2:55873605-55873624	Msa0412470:intron	30.0%
TAAAATAAACACAGTGAAGG+GGG	-	chr3_2:55873750-55873769	None:intergenic	30.0%
ACTTAATTGTCTCATGACAT+TGG	+	chr3_2:55874008-55874027	Msa0412470:intron	30.0%
AACAAAACATGTCAAGCAAT+TGG	-	chr3_2:55874178-55874197	None:intergenic	30.0%
TATACATTGTGTTGAAAGAC+TGG	+	chr3_2:55874498-55874517	Msa0412470:three_prime_UTR	30.0%
ATGGTGAAGGACTATATATA+AGG	+	chr3_2:55874567-55874586	Msa0412470:intron	30.0%
TGGTGAAGGACTATATATAA+GGG	+	chr3_2:55874568-55874587	Msa0412470:intron	30.0%
TATATTACCAGTGAGAAAAG+TGG	-	chr3_2:55873055-55873074	None:intergenic	30.0%
TTATCTATCTATCTATCGCA+GGG	+	chr3_2:55873605-55873624	Msa0412470:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	55872815	55874616	55872815	ID=Msa0412470;Name=Msa0412470
chr3_2	mRNA	55872815	55874616	55872815	ID=Msa0412470-mRNA-1;Parent=Msa0412470;Name=Msa0412470-mRNA-1;_AED=0.39;_eAED=0.39;_QI=201\|1\|1\|1\|0.8\|0.66\|6\|409\|245
chr3_2	exon	55872815	55873066	55872815	ID=Msa0412470-mRNA-1:exon:11353;Parent=Msa0412470-mRNA-1
chr3_2	exon	55873160	55873552	55873160	ID=Msa0412470-mRNA-1:exon:11354;Parent=Msa0412470-mRNA-1
chr3_2	exon	55873626	55873680	55873626	ID=Msa0412470-mRNA-1:exon:11355;Parent=Msa0412470-mRNA-1
chr3_2	exon	55873855	55873940	55873855	ID=Msa0412470-mRNA-1:exon:11356;Parent=Msa0412470-mRNA-1
chr3_2	exon	55874034	55874569	55874034	ID=Msa0412470-mRNA-1:exon:11357;Parent=Msa0412470-mRNA-1
chr3_2	exon	55874591	55874616	55874591	ID=Msa0412470-mRNA-1:exon:11358;Parent=Msa0412470-mRNA-1
chr3_2	five_prime_UTR	55872815	55873015	55872815	ID=Msa0412470-mRNA-1:five_prime_utr;Parent=Msa0412470-mRNA-1
chr3_2	CDS	55873016	55873066	55873016	ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2	CDS	55873160	55873552	55873160	ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2	CDS	55873626	55873680	55873626	ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2	CDS	55873855	55873940	55873855	ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2	CDS	55874034	55874186	55874034	ID=Msa0412470-mRNA-1:cds;Parent=Msa0412470-mRNA-1
chr3_2	three_prime_UTR	55874187	55874569	55874187	ID=Msa0412470-mRNA-1:three_prime_utr;Parent=Msa0412470-mRNA-1
chr3_2	three_prime_UTR	55874591	55874616	55874591	ID=Msa0412470-mRNA-1:three_prime_utr;Parent=Msa0412470-mRNA-1

Gene Sequence

>Msa0412470

ATGGCTGCTGCTGCATTCAATGTTACTACAACACCGCCACTTTTCTCACTGTCAAATGTTGTTGCTCTGAATCCTAATCCTAACCCTAAAAGAAGCATCTCCGTCGGGGTGGTTAGGTCCCGAGGTGTGGGTGTGAAACTAGCAGTAGGAGTACGACGACAAGTGAAAGTGAGGGCAGTGGAAAATGGTAGTAGTTCAGAGGAGAAAGTAATAGTACAGTCAAAAGTGACTCACAAAGTATTCTTTGATGTTAGTATTGGAAATCCAGTTGGGAAGCTGGTTGGAAGGATTGTGATAGGACTCTTTGGTGATGATGTCCCGCAAACTGTTGAGAACTTCCGTGCCCTTTCCACCGGTGAGAAGGGCTTTGGCTACAAGTCCTCCACCTTCCATCGCGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGATAAAGGAAATGGAACTGGAGGCAAAAGTATCTATGGTCGTACTTTCAAAGATGAGAATTTTAATCTGTCTCATACCGGACCAGGAGCTGTTAGCATGGCAAATGCTGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACGCCGTGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCACAGGAGACTGATCGTGGTGATCGTCCCCTAAAGAAGGTGACAATCAGTGACTGTGGCGAGCTTCCAATTGCTTGA

Protein sequence

>Msa0412470

MAAAAFNVTTTPPLFSLSNVVALNPNPNPKRSISVGVVRSRGVGVKLAVGVRRQVKVRAVENGSSSEEKVIVQSKVTHKVFFDVSIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTGEKGFGYKSSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGAVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPLKKVTISDCGELPIA*