AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303040 MtrunA17_Chr4g0074531 98.081 521 10 0 1 521 1 521 0.0 1065
Msa1303040 MtrunA17_Chr3g0141761 68.397 443 140 0 79 521 88 530 0.0 660
Msa1303040 MtrunA17_Chr4g0035171 64.224 464 162 2 61 521 66 528 0.0 656
Msa1303040 MtrunA17_Chr7g0271011 62.815 476 166 2 57 521 61 536 0.0 632
Msa1303040 MtrunA17_Chr0c30g0494071 69.231 481 37 6 74 521 13 415 0.0 616
Msa1303040 MtrunA17_Chr5g0447341 57.882 425 172 4 99 521 96 515 0.0 518
Msa1303040 MtrunA17_Chr3g0120471 53.785 502 208 9 25 521 29 511 6.32e-180 515
Msa1303040 MtrunA17_Chr3g0144741 69.531 256 77 1 82 337 80 334 1.81e-128 379
Msa1303040 MtrunA17_Chr3g0144731 62.500 160 59 1 362 521 3 161 2.92e-68 216
Msa1303040 MtrunA17_Chr0c30g0494061 93.939 66 4 0 10 75 1 66 2.84e-36 129
Msa1303040 MtrunA17_Chr4g0077071 45.946 74 39 1 354 426 2 75 7.66e-15 70.1
Msa1303040 MtrunA17_Chr6g0454161 41.860 86 42 2 400 479 92 175 2.86e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303040 AT5G19220.1 78.817 524 106 3 1 521 1 522 0.0 865
Msa1303040 AT1G27680.1 67.735 468 151 0 54 521 51 518 0.0 687
Msa1303040 AT4G39210.2 61.966 468 173 3 58 521 55 521 0.0 628
Msa1303040 AT4G39210.1 61.966 468 173 3 58 521 55 521 0.0 628
Msa1303040 AT2G21590.2 63.920 449 159 2 75 521 76 523 0.0 614
Msa1303040 AT2G21590.3 63.920 449 159 2 75 521 76 523 0.0 614
Msa1303040 AT2G21590.5 63.920 449 159 2 75 521 76 523 0.0 614
Msa1303040 AT2G21590.4 63.920 449 159 2 75 521 76 523 0.0 614
Msa1303040 AT2G21590.7 63.920 449 159 2 75 521 76 523 0.0 614
Msa1303040 AT2G21590.1 63.920 449 159 2 75 521 76 523 0.0 614
Msa1303040 AT2G21590.6 63.920 449 159 2 75 521 76 523 0.0 614
Msa1303040 AT5G48300.1 54.564 482 211 5 42 521 45 520 0.0 522
Msa1303040 AT1G05610.1 40.878 433 236 9 87 515 54 470 2.56e-110 337
Msa1303040 AT1G05610.2 40.367 436 240 9 87 515 54 476 4.64e-109 333

Find 139 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTCAAATGTTCATTTAA+AGG 0.138712 8_3:-65767239 Msa1303040:intron
CTGGTGGATACAATTGTATT+TGG 0.249701 8_3:-65771371 Msa1303040:five_prime_UTR
AGATACTTCTTAATCTATTA+AGG 0.264868 8_3:-65768453 Msa1303040:intron
TCCTCAAATCCGTGGTAAAA+TGG 0.265578 8_3:+65766432 None:intergenic
TTTCGGTTCCTACTTGATTT+TGG 0.266526 8_3:+65766898 None:intergenic
TTTCTACTGGTCACCATTCC+TGG 0.267523 8_3:+65771104 None:intergenic
CTTATCTCTTCAACGATTAC+TGG 0.268611 8_3:-65767804 Msa1303040:CDS
GCTTTGAGCTCTGCTCCTTT+AGG 0.279836 8_3:+65768660 None:intergenic
CAAGTGGATACAACCGTTCT+TGG 0.306769 8_3:-65768544 Msa1303040:CDS
TCACCGGAGGAGGGACAAAA+TGG 0.309271 8_3:+65771193 None:intergenic
TTCCAATTGGAGGTGCTTAT+AGG 0.311709 8_3:-65769630 Msa1303040:CDS
TATAGCCGCGCCTCAGATTT+CGG 0.318771 8_3:-65768732 Msa1303040:intron
CCTCTACCGTATGGACTATA+TGG 0.343087 8_3:-65769034 Msa1303040:CDS
ATCACTACGCATTTGAAGAT+TGG 0.360996 8_3:+65771338 None:intergenic
ATGCTGTGCGGCAGTTTCAC+TGG 0.369035 8_3:-65769256 Msa1303040:CDS
TTTGCTCGTCGCTTAGTTAG+AGG 0.376799 8_3:+65770032 None:intergenic
GATGTTAAGATAGACAGAAT+TGG 0.383063 8_3:+65766311 None:intergenic
TCCGGTACTGGAGTCACTTT+CGG 0.387235 8_3:-65769496 Msa1303040:CDS
TTCCTAAATTAGGTTCCAAT+TGG 0.393610 8_3:-65769643 Msa1303040:intron
ATGTTAAGATAGACAGAATT+GGG 0.406966 8_3:+65766312 None:intergenic
CGTGGCGTTTGTAACAAAAC+TGG 0.411332 8_3:-65771390 Msa1303040:five_prime_UTR
TTTCCAACTGCAAATGACTT+TGG 0.412063 8_3:-65768273 Msa1303040:CDS
CGTGCTTACAACTCCGGTAC+TGG 0.418287 8_3:-65769508 Msa1303040:CDS
CACAATGGATATAAATAGAT+TGG 0.419416 8_3:-65766354 Msa1303040:three_prime_UTR
CACAACCTTCAAGTTTCTAC+TGG 0.421899 8_3:+65771091 None:intergenic
ACTCCCATCGAAGCAATATA+TGG 0.423603 8_3:+65768493 None:intergenic
TTCATAGAGCATAGTGTAGT+TGG 0.423776 8_3:-65767277 Msa1303040:CDS
GGAAGAGTTCCAATAGGAAT+AGG 0.426216 8_3:-65766929 Msa1303040:CDS
ATCCTCAATATCCTTGCTCC+TGG 0.426326 8_3:+65769080 None:intergenic
CTATTGATGCAGTTACTCAT+TGG 0.434110 8_3:+65769595 None:intergenic
ATAACTGCCACGACTGTACT+TGG 0.437008 8_3:+65770086 None:intergenic
AGCCTATAAGCACCTCCAAT+TGG 0.440968 8_3:+65769628 None:intergenic
GTTATACTTGGTGGAGGAGC+TGG 0.446891 8_3:-65770068 Msa1303040:CDS
TCACTACGCATTTGAAGATT+GGG 0.449428 8_3:+65771339 None:intergenic
CACTCTTTCTTGTCTGCCAA+TGG 0.453178 8_3:-65768870 Msa1303040:CDS
CTAAATTAGGTTCCAATTGG+AGG 0.458441 8_3:-65769640 Msa1303040:intron
GACAGAATTGGGATATAAGA+TGG 0.461311 8_3:+65766323 None:intergenic
ATGAGTAACTGCATCAATAG+TGG 0.461743 8_3:-65769592 Msa1303040:CDS
TAAAATTCTTTAGCTGAGGC+AGG 0.478517 8_3:+65768237 None:intergenic
ACCGTTCAGCTACGTGAGCC+AGG 0.478588 8_3:-65771122 Msa1303040:CDS
GGAATTAGAGTTGTTAATGA+AGG 0.480825 8_3:+65771215 None:intergenic
TTTCTCCTTGATGTGTACAT+AGG 0.483924 8_3:+65767497 None:intergenic
AAAATGGTTCAAACAAATGA+TGG 0.486066 8_3:+65766448 None:intergenic
AGAAATGAGATTTGTAAAGC+TGG 0.488846 8_3:-65766188 Msa1303040:three_prime_UTR
TCATTTAGTGAAAAGCCTAA+AGG 0.496100 8_3:-65768675 Msa1303040:CDS
TTTGTCCCTCCTCCGGTGAT+CGG 0.496381 8_3:-65771189 Msa1303040:five_prime_UTR
CTTGTCTGCCAATGGATGAC+AGG 0.496401 8_3:-65768862 Msa1303040:intron
CTTGCTGCAACTCAAACTCC+AGG 0.496669 8_3:-65769314 Msa1303040:CDS
GCAGTTTCACTGGCTCTTTG+AGG 0.499205 8_3:-65769246 Msa1303040:intron
GGTGACCAGTAGAAACTTGA+AGG 0.503646 8_3:-65771096 Msa1303040:CDS
TACTATCAGATCATTCTTTG+AGG 0.515753 8_3:-65767770 Msa1303040:CDS
GCTGAGGGAAGAGTTCCAAT+AGG 0.519229 8_3:-65766935 Msa1303040:CDS
ATACAGGACACAGTGATGCT+TGG 0.524075 8_3:-65767001 Msa1303040:intron
AAAACCATATATTGCTTCGA+TGG 0.524539 8_3:-65768497 Msa1303040:CDS
AAAATTCAACAATTGAAGAC+GGG 0.524972 8_3:-65766492 Msa1303040:CDS
TCCCAGGAGCAAGGATATTG+AGG 0.529538 8_3:-65769082 Msa1303040:CDS
ACAGTCGTGGCAGTTATACT+TGG 0.529938 8_3:-65770080 Msa1303040:CDS
GTCGTGGCAGTTATACTTGG+TGG 0.532140 8_3:-65770077 Msa1303040:CDS
ACTGGAGTCACTTTCGGAGA+TGG 0.533530 8_3:-65769490 Msa1303040:CDS
GATCCAAAGTCATTTGCAGT+TGG 0.534676 8_3:+65768270 None:intergenic
TCCGAAAGTGACTCCAGTAC+CGG 0.535857 8_3:+65769495 None:intergenic
CATGTCTCTCACTGCTGATG+TGG 0.536057 8_3:-65770976 Msa1303040:CDS
CCATATAGTCCATACGGTAG+AGG 0.536873 8_3:+65769034 None:intergenic
TTATCTCTTCAACGATTACT+GGG 0.537052 8_3:-65767803 Msa1303040:CDS
AACCGTTCTTGGTCTTTCGA+AGG 0.537925 8_3:-65768533 Msa1303040:CDS
GAGCTTCATGCTGCTACCAA+TGG 0.540764 8_3:-65771032 Msa1303040:CDS
CACCGGAGGAGGGACAAAAT+GGG 0.542471 8_3:+65771194 None:intergenic
AACACTCTTGGTGCAACCAT+TGG 0.542518 8_3:+65771016 None:intergenic
TGCATCGTAAAAGCTAAACT+TGG 0.547364 8_3:+65767526 None:intergenic
TTGCTATTGTCAATCTTCGA+TGG 0.549202 8_3:+65767467 None:intergenic
CTATGAAACTGAGGCAGAAG+TGG 0.552867 8_3:-65766969 Msa1303040:CDS
TTGCTCGTCGCTTAGTTAGA+GGG 0.553232 8_3:+65770033 None:intergenic
TCCTCAATATCCTTGCTCCT+GGG 0.553261 8_3:+65769081 None:intergenic
CAAAGTCCATATAGTCCATA+CGG 0.554961 8_3:+65769028 None:intergenic
ATCCTTCGAAAGACCAAGAA+CGG 0.557150 8_3:+65768531 None:intergenic
AAACCATATATTGCTTCGAT+GGG 0.560652 8_3:-65768496 Msa1303040:CDS
AAATGGTTCAAACAAATGAT+GGG 0.563185 8_3:+65766449 None:intergenic
TGGGGATCACCTCTACCGTA+TGG 0.564627 8_3:-65769043 Msa1303040:CDS
GTTGCACCAAGAGTGTTACT+AGG 0.567304 8_3:-65771010 Msa1303040:CDS
CATGTAAAATTCTTTAGCTG+AGG 0.568397 8_3:+65768233 None:intergenic
GCAACCTACCTGTCATCCAT+TGG 0.568958 8_3:+65768854 None:intergenic
AATCAATGTCCTACACATGA+AGG 0.570702 8_3:+65771264 None:intergenic
TCGTAAAAGCTAAACTTGGA+TGG 0.571340 8_3:+65767530 None:intergenic
AACTACACTATGCTCTATGA+AGG 0.573836 8_3:+65767279 None:intergenic
CTTAGTTAGAGGGAAGAGAC+GGG 0.579833 8_3:+65770043 None:intergenic
AACGATTACTGGGAGGACAT+AGG 0.581490 8_3:-65767793 Msa1303040:CDS
TGCAAATGACTTTGGATCAG+AGG 0.582266 8_3:-65768265 Msa1303040:CDS
TGATAGCATTATCTGACCAC+TGG 0.582297 8_3:+65771148 None:intergenic
CAAAACCTATGTACACATCA+AGG 0.586204 8_3:-65767502 Msa1303040:CDS
TTACAAACGCCACGAAGTAG+AGG 0.586616 8_3:+65771399 None:intergenic
ATTGCACGTGCTTACAACTC+CGG 0.586744 8_3:-65769514 Msa1303040:CDS
ACTCAAACTCCAGGGGAACA+AGG 0.586901 8_3:-65769305 Msa1303040:CDS
ATACAACAGTGACGCCGGAA+CGG 0.588438 8_3:+65766518 None:intergenic
TGATGTGGCTAGCGAATCCA+AGG 0.589531 8_3:-65770961 Msa1303040:intron
AGTGGCAGCACAGTTAGCTG+AGG 0.590518 8_3:-65766951 Msa1303040:CDS
ACAAACGCCACGAAGTAGAG+GGG 0.592655 8_3:+65771401 None:intergenic
TGAAGATTGACAACAAAGGA+AGG 0.594911 8_3:-65768704 Msa1303040:CDS
GGCGTTTGTAACAAAACTGG+TGG 0.597919 8_3:-65771387 Msa1303040:five_prime_UTR
TCCTGGCTCACGTAGCTGAA+CGG 0.602124 8_3:+65771121 None:intergenic
TGAGTAACTGCATCAATAGT+GGG 0.602456 8_3:-65769591 Msa1303040:CDS
TTTCAATACAACAGTGACGC+CGG 0.605108 8_3:+65766513 None:intergenic
TTGCTGCAACTCAAACTCCA+GGG 0.607945 8_3:-65769313 Msa1303040:CDS
GTGGCAGTTATACTTGGTGG+AGG 0.608267 8_3:-65770074 Msa1303040:CDS
TCAGCTACGTGAGCCAGGAA+TGG 0.608992 8_3:-65771117 Msa1303040:CDS
GTTGATTCAATTATATCACA+TGG 0.609797 8_3:-65767319 Msa1303040:CDS
GCTTAGTTAGAGGGAAGAGA+CGG 0.611428 8_3:+65770042 None:intergenic
GGGAGTGTACGTCTTCAAGA+AGG 0.612483 8_3:-65768476 Msa1303040:CDS
GAGGCTGATAGATCATCAGA+AGG 0.613138 8_3:-65766550 Msa1303040:CDS
ACTACACAACCTTCATGTGT+AGG 0.614291 8_3:-65771273 Msa1303040:five_prime_UTR
GAAGTAGGATCCCAGGAGCA+AGG 0.614406 8_3:-65769091 Msa1303040:intron
TTAACTGCAGGGAGTACAAG+AGG 0.616616 8_3:-65766569 Msa1303040:intron
TACAAACGCCACGAAGTAGA+GGG 0.619232 8_3:+65771400 None:intergenic
AGGAGCAGAGCTCAAAGCAA+TGG 0.621977 8_3:-65768655 Msa1303040:intron
TGAATTGCAATCTCTCTGCA+CGG 0.623735 8_3:-65766223 Msa1303040:three_prime_UTR
GTGGCAGCACAGTTAGCTGA+GGG 0.623997 8_3:-65766950 Msa1303040:CDS
TGCAATATGTCTGTTGAGTG+AGG 0.624023 8_3:+65769531 None:intergenic
GATACTCACATGCTCAGTGA+GGG 0.627354 8_3:+65767738 None:intergenic
CTATTGTCAATCTTCGATGG+TGG 0.633694 8_3:+65767470 None:intergenic
ATCCAGGATCATCGAGAGAG+CGG 0.634167 8_3:-65768902 Msa1303040:intron
CTTCATCAGACCGAAATCTG+AGG 0.635986 8_3:+65768722 None:intergenic
ATCGAAGATTGACAATAGCA+AGG 0.647211 8_3:-65767465 Msa1303040:intron
AAGGGATCCAAGTACAGTCG+TGG 0.648334 8_3:-65770093 Msa1303040:CDS
TAGGACATTGATTTCAAACA+CGG 0.648351 8_3:-65771254 Msa1303040:five_prime_UTR
TGCTGCAACTCAAACTCCAG+GGG 0.653704 8_3:-65769312 Msa1303040:CDS
AAAGCTCGTCCTCAAATCCG+TGG 0.659004 8_3:+65766424 None:intergenic
CACATCAGCAGTGAGAGACA+TGG 0.659597 8_3:+65770977 None:intergenic
ACAATTGTATTTGGATAACG+TGG 0.668904 8_3:-65771362 Msa1303040:five_prime_UTR
AGCTGATTACTATGAAACTG+AGG 0.673409 8_3:-65766978 Msa1303040:CDS
AGGCTGATAGATCATCAGAA+GGG 0.673829 8_3:-65766549 Msa1303040:CDS
TTTCGGAGATGGCTATGTCG+AGG 0.674748 8_3:-65769479 Msa1303040:intron
TCAGACCGAAATCTGAGGCG+CGG 0.680822 8_3:+65768727 None:intergenic
TGATACTCACATGCTCAGTG+AGG 0.683087 8_3:+65767737 None:intergenic
AAAATGGCAGTCTCTGCCAG+TGG 0.689914 8_3:-65771164 Msa1303040:CDS
CTGATGAAGATTGACAACAA+AGG 0.698426 8_3:-65768708 Msa1303040:CDS
CAAACGCCACGAAGTAGAGG+GGG 0.704127 8_3:+65771402 None:intergenic
TCTCTTCAACGATTACTGGG+AGG 0.713335 8_3:-65767800 Msa1303040:CDS
AAACACGGACAAGAAGACAA+AGG 0.716788 8_3:-65771239 Msa1303040:five_prime_UTR
TGTTGTCATAGCAAACTCAG+AGG 0.724048 8_3:-65766768 Msa1303040:intron
AAGGTACTGCTGATGCTGTG+CGG 0.750182 8_3:-65769268 Msa1303040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATAAAAACACAA+TGG - chr8_3:65771321-65771340 Msa1303040:five_prime_UTR 10.0%
!! GAATTTAAATAACAATTCAT+TGG + chr8_3:65766999-65767018 None:intergenic 15.0%
!!! ACCAATTAATTTAATTTAGA+TGG - chr8_3:65769391-65769410 Msa1303040:intron 15.0%
!! TAAATTCCTAAAATGATTTA+AGG - chr8_3:65769702-65769721 Msa1303040:intron 15.0%
!! TTAATTTATCGAATATCCTA+TGG + chr8_3:65766210-65766229 None:intergenic 20.0%
!!! ATCATTTTTTTTGTTGGAAT+TGG + chr8_3:65766242-65766261 None:intergenic 20.0%
!! TTCCAACAAAAAAAATGATA+AGG - chr8_3:65766243-65766262 Msa1303040:three_prime_UTR 20.0%
!!! AGAAATCTTATGTTTTTCTT+TGG + chr8_3:65766974-65766993 None:intergenic 20.0%
!! ATGGATTTACAATTATATAG+TGG - chr8_3:65767064-65767083 Msa1303040:intron 20.0%
!! TAAACAAAACTCTTAATCAA+TGG + chr8_3:65767317-65767336 None:intergenic 20.0%
!! TATATTACTGCATTGAATTT+AGG + chr8_3:65767464-65767483 None:intergenic 20.0%
!! TAAATTCAATGCAGTAATAT+AGG - chr8_3:65767463-65767482 Msa1303040:intron 20.0%
!! AAATTCAATGCAGTAATATA+GGG - chr8_3:65767464-65767483 Msa1303040:intron 20.0%
!! AGATACTTCTTAATCTATTA+AGG - chr8_3:65769237-65769256 Msa1303040:intron 20.0%
!! TAATGTTGTATCAAAATGTT+AGG - chr8_3:65769266-65769285 Msa1303040:CDS 20.0%
!! GCCATCTAAATTAAATTAAT+TGG + chr8_3:65769395-65769414 None:intergenic 20.0%
!!! TTTTCACCTTAAATCATTTT+AGG + chr8_3:65769711-65769730 None:intergenic 20.0%
!! TGAAGTTTAATTCATTTCTT+AGG + chr8_3:65770003-65770022 None:intergenic 20.0%
!! AAACTCAAATGTTCATTTAA+AGG - chr8_3:65770451-65770470 Msa1303040:intron 20.0%
!!! ATCTTTTGAAAATAGTAGAT+TGG + chr8_3:65770487-65770506 None:intergenic 20.0%
!! AATAAACATACCAAAATACA+TGG + chr8_3:65770646-65770665 None:intergenic 20.0%
!! AAAAATTCAACAATTGAAGA+CGG - chr8_3:65771197-65771216 Msa1303040:five_prime_UTR 20.0%
!!! GTCCTTATCATTTTTTTTGT+TGG + chr8_3:65766248-65766267 None:intergenic 25.0%
!!! TTTTGTAATGGAGAAATGAT+GGG - chr8_3:65766625-65766644 Msa1303040:intron 25.0%
!!! TTTGATTCTCTACTTTTGTT+TGG - chr8_3:65767027-65767046 Msa1303040:intron 25.0%
! TACCATGACTATATATGTAT+AGG - chr8_3:65767090-65767109 Msa1303040:intron 25.0%
! TACCTATACATATATAGTCA+TGG + chr8_3:65767095-65767114 None:intergenic 25.0%
!! ACTTTTTGTTAGATTAAAGC+TGG - chr8_3:65767141-65767160 Msa1303040:intron 25.0%
!! TTACTACACGTAAATTTTGA+AGG - chr8_3:65767351-65767370 Msa1303040:intron 25.0%
! AAATGTTTCCATATGATGAA+TGG - chr8_3:65767533-65767552 Msa1303040:CDS 25.0%
! AATGTTTCCATATGATGAAT+GGG - chr8_3:65767534-65767553 Msa1303040:intron 25.0%
! TTATGATGAATGGAACAATT+AGG + chr8_3:65767725-65767744 None:intergenic 25.0%
! AAGGAAATGAAAAACGTAAA+TGG - chr8_3:65767939-65767958 Msa1303040:intron 25.0%
! AGGAAATGAAAAACGTAAAT+GGG - chr8_3:65767940-65767959 Msa1303040:intron 25.0%
!!! ATTAAGTTGGTTATCTTCTT+TGG - chr8_3:65768021-65768040 Msa1303040:intron 25.0%
!!! TTAAGTTGGTTATCTTCTTT+GGG - chr8_3:65768022-65768041 Msa1303040:intron 25.0%
! ATAATTTACAAATCAACGTG+CGG + chr8_3:65768322-65768341 None:intergenic 25.0%
!! AAGCTACAACATATATTTTG+TGG + chr8_3:65768499-65768518 None:intergenic 25.0%
!! AAATATGCTTTTCATGAAGT+AGG - chr8_3:65768584-65768603 Msa1303040:intron 25.0%
!!! AAATGTTAGGTTTTTTCTTG+TGG - chr8_3:65769279-65769298 Msa1303040:CDS 25.0%
!! AGCTAAAGAATTTTACATGA+AGG - chr8_3:65769461-65769480 Msa1303040:intron 25.0%
!! TTAAGACTTTTGTCTAAGTT+AGG + chr8_3:65769648-65769667 None:intergenic 25.0%
! TAAAAACTTATAGCTGCTTA+TGG - chr8_3:65769665-65769684 Msa1303040:intron 25.0%
! ATGTTCACTTTCACTTATTA+TGG - chr8_3:65769834-65769853 Msa1303040:intron 25.0%
! TCAATTTCAGTTGTAATTGA+TGG - chr8_3:65769973-65769992 Msa1303040:intron 25.0%
! AAAGGTCACATAATATATTG+AGG + chr8_3:65770339-65770358 None:intergenic 25.0%
!! GTTGATTCAATTATATCACA+TGG - chr8_3:65770371-65770390 Msa1303040:intron 25.0%
! CAAATGTTCATTTAAAGGTT+TGG - chr8_3:65770456-65770475 Msa1303040:intron 25.0%
! GTAAATCAGGTAAGTATATA+TGG + chr8_3:65770536-65770555 None:intergenic 25.0%
!! AATATTCCTAAAGTTTTTGC+TGG - chr8_3:65770588-65770607 Msa1303040:intron 25.0%
! ATTGTATTACACTTCTATAC+AGG - chr8_3:65770673-65770692 Msa1303040:intron 25.0%
! ATTGACAAAAATGCTAGAAT+TGG - chr8_3:65770893-65770912 Msa1303040:intron 25.0%
! AAAATTCAACAATTGAAGAC+GGG - chr8_3:65771198-65771217 Msa1303040:five_prime_UTR 25.0%
! AAATGGTTCAAACAAATGAT+GGG + chr8_3:65771244-65771263 None:intergenic 25.0%
! AAAATGGTTCAAACAAATGA+TGG + chr8_3:65771245-65771264 None:intergenic 25.0%
! CACAATGGATATAAATAGAT+TGG - chr8_3:65771336-65771355 Msa1303040:five_prime_UTR 25.0%
! ATGTTAAGATAGACAGAATT+GGG + chr8_3:65771381-65771400 None:intergenic 25.0%
ATATCCTATGGATTTAGACT+TGG + chr8_3:65766198-65766217 None:intergenic 30.0%
ACAATTGTATTTGGATAACG+TGG - chr8_3:65766328-65766347 Msa1303040:three_prime_UTR 30.0%
!! TAGGACATTGATTTCAAACA+CGG - chr8_3:65766436-65766455 Msa1303040:three_prime_UTR 30.0%
GGAATTAGAGTTGTTAATGA+AGG + chr8_3:65766478-65766497 None:intergenic 30.0%
!! AAGGTTGTGAAGTTTTGTAA+TGG - chr8_3:65766613-65766632 Msa1303040:intron 30.0%
!! GTTTTGTAATGGAGAAATGA+TGG - chr8_3:65766624-65766643 Msa1303040:intron 30.0%
! ATTTTTCCTAGTAACACTCT+TGG + chr8_3:65766689-65766708 None:intergenic 30.0%
CAAGAAAGAGTTAATTGCAT+TGG + chr8_3:65766792-65766811 None:intergenic 30.0%
GCAATTAACTCTTTCTTGTT+TGG - chr8_3:65766794-65766813 Msa1303040:CDS 30.0%
TAGAAACGTTGTGAAATTCT+TGG - chr8_3:65766900-65766919 Msa1303040:intron 30.0%
!!! TTTGGCTTGTATTTTGACTA+TGG - chr8_3:65767045-65767064 Msa1303040:intron 30.0%
TGACCTATATACTACTTCAA+TGG - chr8_3:65767175-65767194 Msa1303040:intron 30.0%
CTATATACTACTTCAATGGT+GGG - chr8_3:65767179-65767198 Msa1303040:intron 30.0%
CAAAGAAAATCTTAATGGAG+GGG + chr8_3:65767229-65767248 None:intergenic 30.0%
GCAAAGAAAATCTTAATGGA+GGG + chr8_3:65767230-65767249 None:intergenic 30.0%
AGCAAAGAAAATCTTAATGG+AGG + chr8_3:65767231-65767250 None:intergenic 30.0%
TGCACAAAGTATAAAGTTGT+TGG + chr8_3:65767292-65767311 None:intergenic 30.0%
ATTACTGCATTGAATTTAGG+TGG + chr8_3:65767461-65767480 None:intergenic 30.0%
CATATGATGAATGGGAATAT+GGG - chr8_3:65767542-65767561 Msa1303040:intron 30.0%
AAAATGCAGATGTGGAAAAA+AGG - chr8_3:65767578-65767597 Msa1303040:intron 30.0%
AAATGCAGATGTGGAAAAAA+GGG - chr8_3:65767579-65767598 Msa1303040:intron 30.0%
AGAAAAGAAAAACTTACAGC+AGG + chr8_3:65767685-65767704 None:intergenic 30.0%
GAATGGAACAATTAGGAAAA+TGG + chr8_3:65767718-65767737 None:intergenic 30.0%
GTGGTTGCTTAATTATAGTT+TGG - chr8_3:65767750-65767769 Msa1303040:CDS 30.0%
TTGAATGTAACAATAAGTGC+CGG - chr8_3:65767846-65767865 Msa1303040:intron 30.0%
GGAAATGAAAAACGTAAATG+GGG - chr8_3:65767941-65767960 Msa1303040:intron 30.0%
ATATGTAGCTGCTTACATTA+TGG + chr8_3:65768003-65768022 None:intergenic 30.0%
TAAGCAGCTACATATTAAGT+TGG - chr8_3:65768008-65768027 Msa1303040:intron 30.0%
!! TAAGTTGGTTATCTTCTTTG+GGG - chr8_3:65768023-65768042 Msa1303040:intron 30.0%
TTCCTAAATTAGGTTCCAAT+TGG - chr8_3:65768047-65768066 Msa1303040:intron 30.0%
! GTGGTTTTCTTAATTGCTTT+AGG + chr8_3:65768480-65768499 None:intergenic 30.0%
!! TGTAGCTTTTTCTTTTATGC+AGG - chr8_3:65768511-65768530 Msa1303040:CDS 30.0%
! GGTTATGCTGTTTAATACTA+TGG - chr8_3:65768532-65768551 Msa1303040:CDS 30.0%
CATCACACTTAATTGCTTAT+TGG + chr8_3:65768559-65768578 None:intergenic 30.0%
!!! AGGATGTTTTGATTCTTTCT+GGG - chr8_3:65768628-65768647 Msa1303040:intron 30.0%
ATATGGACTTTGTTAGAGTA+AGG - chr8_3:65768673-65768692 Msa1303040:CDS 30.0%
TTGACTTAAACTTCTTATCC+AGG - chr8_3:65768772-65768791 Msa1303040:intron 30.0%
TGACATGAATCTTACTACTT+GGG + chr8_3:65768866-65768885 None:intergenic 30.0%
ATGACATGAATCTTACTACT+TGG + chr8_3:65768867-65768886 None:intergenic 30.0%
! TAGGCTTTTCACTAAATGAA+AGG + chr8_3:65769014-65769033 None:intergenic 30.0%
TCATTTAGTGAAAAGCCTAA+AGG - chr8_3:65769015-65769034 Msa1303040:intron 30.0%
AAAACCATATATTGCTTCGA+TGG - chr8_3:65769193-65769212 Msa1303040:intron 30.0%
AAACCATATATTGCTTCGAT+GGG - chr8_3:65769194-65769213 Msa1303040:intron 30.0%
CATGTAAAATTCTTTAGCTG+AGG + chr8_3:65769460-65769479 None:intergenic 30.0%
ATCATTCTTTGTCATTGCAA+TGG - chr8_3:65769554-65769573 Msa1303040:CDS 30.0%
CTGAACTTGTAATTGCTTAT+TGG - chr8_3:65769779-65769798 Msa1303040:intron 30.0%
TATAGCAAAAGTTTGAATGC+AGG - chr8_3:65769863-65769882 Msa1303040:intron 30.0%
TTATCTCTTCAACGATTACT+GGG - chr8_3:65769887-65769906 Msa1303040:intron 30.0%
TACTATCAGATCATTCTTTG+AGG - chr8_3:65769920-65769939 Msa1303040:intron 30.0%
AAAGTTGTAATCACATGGTA+TGG + chr8_3:65770298-65770317 None:intergenic 30.0%
TATTGAGGTTGAACATTTGA+TGG + chr8_3:65770324-65770343 None:intergenic 30.0%
TACCTGATTTACTAGTTATG+TGG - chr8_3:65770544-65770563 Msa1303040:intron 30.0%
! TAGTAGTAGACCATGTATTT+TGG - chr8_3:65770633-65770652 Msa1303040:intron 30.0%
AGAAAACACCAAAATCAAGT+AGG - chr8_3:65770784-65770803 Msa1303040:intron 30.0%
! TACCATGATAGTGAAAGTTT+CGG + chr8_3:65770812-65770831 None:intergenic 30.0%
AGTAAGCTAAAGCAACTTAA+GGG + chr8_3:65770991-65771010 None:intergenic 30.0%
TGCTAATTGAATTAACTGCA+GGG - chr8_3:65771110-65771129 Msa1303040:CDS 30.0%
! TTGTTTGAACCATTTTACCA+CGG - chr8_3:65771249-65771268 Msa1303040:five_prime_UTR 30.0%
GATGTTAAGATAGACAGAAT+TGG + chr8_3:65771382-65771401 None:intergenic 30.0%
! CTGGTGGATACAATTGTATT+TGG - chr8_3:65766319-65766338 Msa1303040:three_prime_UTR 35.0%
TCACTACGCATTTGAAGATT+GGG + chr8_3:65766354-65766373 None:intergenic 35.0%
ATCACTACGCATTTGAAGAT+TGG + chr8_3:65766355-65766374 None:intergenic 35.0%
AATCAATGTCCTACACATGA+AGG + chr8_3:65766429-65766448 None:intergenic 35.0%
AAGTTCACTCAGATAAACCT+TGG + chr8_3:65766749-65766768 None:intergenic 35.0%
CCACCATTGAAGTAGTATAT+AGG + chr8_3:65767181-65767200 None:intergenic 35.0%
CCTATATACTACTTCAATGG+TGG - chr8_3:65767178-65767197 Msa1303040:intron 35.0%
GGGAGCAAAGAAAATCTTAA+TGG + chr8_3:65767234-65767253 None:intergenic 35.0%
CCATATTCCCATTCATCATA+TGG + chr8_3:65767544-65767563 None:intergenic 35.0%
CCATATGATGAATGGGAATA+TGG - chr8_3:65767541-65767560 Msa1303040:intron 35.0%
TCCATTCATCATAAGCATAG+TGG - chr8_3:65767731-65767750 Msa1303040:intron 35.0%
ACCACTATGCTTATGATGAA+TGG + chr8_3:65767735-65767754 None:intergenic 35.0%
GTTTGTGTTCGTGTTTCATA+GGG + chr8_3:65767776-65767795 None:intergenic 35.0%
TGTTTGTGTTCGTGTTTCAT+AGG + chr8_3:65767777-65767796 None:intergenic 35.0%
TAGTGTTTGGTTAGTAACAC+CGG + chr8_3:65767868-65767887 None:intergenic 35.0%
GTATCAGTGCTACATAAGTT+TGG - chr8_3:65767906-65767925 Msa1303040:intron 35.0%
! CGTTTTTCATTTCCTTGACA+GGG + chr8_3:65767935-65767954 None:intergenic 35.0%
! ACGTTTTTCATTTCCTTGAC+AGG + chr8_3:65767936-65767955 None:intergenic 35.0%
!! TCTTTGGGGTTTCCTAAATT+AGG - chr8_3:65768037-65768056 Msa1303040:intron 35.0%
CTCCAATTGGAACCTAATTT+AGG + chr8_3:65768052-65768071 None:intergenic 35.0%
CTAAATTAGGTTCCAATTGG+AGG - chr8_3:65768050-65768069 Msa1303040:intron 35.0%
CTATTGATGCAGTTACTCAT+TGG + chr8_3:65768098-65768117 None:intergenic 35.0%
ATGAGTAACTGCATCAATAG+TGG - chr8_3:65768098-65768117 Msa1303040:intron 35.0%
TGAGTAACTGCATCAATAGT+GGG - chr8_3:65768099-65768118 Msa1303040:intron 35.0%
CAAGGTAAAAAGTGGTTTCA+AGG - chr8_3:65768403-65768422 Msa1303040:intron 35.0%
!!! GAGGATGTTTTGATTCTTTC+TGG - chr8_3:65768627-65768646 Msa1303040:intron 35.0%
!!! GGATGTTTTGATTCTTTCTG+GGG - chr8_3:65768629-65768648 Msa1303040:intron 35.0%
CAAAGTCCATATAGTCCATA+CGG + chr8_3:65768665-65768684 None:intergenic 35.0%
ACATGAATCTTACTACTTGG+GGG + chr8_3:65768864-65768883 None:intergenic 35.0%
GACATGAATCTTACTACTTG+GGG + chr8_3:65768865-65768884 None:intergenic 35.0%
CTGATGAAGATTGACAACAA+AGG - chr8_3:65768982-65769001 Msa1303040:intron 35.0%
TGAAGATTGACAACAAAGGA+AGG - chr8_3:65768986-65769005 Msa1303040:intron 35.0%
TTTCCAACTGCAAATGACTT+TGG - chr8_3:65769417-65769436 Msa1303040:intron 35.0%
TAAAATTCTTTAGCTGAGGC+AGG + chr8_3:65769456-65769475 None:intergenic 35.0%
! GAAGGTATGACTGATAAAGA+AGG - chr8_3:65769479-65769498 Msa1303040:intron 35.0%
CTGATAAAGAAGGTTTACTG+TGG - chr8_3:65769489-65769508 Msa1303040:CDS 35.0%
AGTGAAAGTGAACATTCTAC+TGG + chr8_3:65769829-65769848 None:intergenic 35.0%
CTTATCTCTTCAACGATTAC+TGG - chr8_3:65769886-65769905 Msa1303040:intron 35.0%
TCGTAAAAGCTAAACTTGGA+TGG + chr8_3:65770163-65770182 None:intergenic 35.0%
TGCATCGTAAAAGCTAAACT+TGG + chr8_3:65770167-65770186 None:intergenic 35.0%
CAAAACCTATGTACACATCA+AGG - chr8_3:65770188-65770207 Msa1303040:intron 35.0%
TTTCTCCTTGATGTGTACAT+AGG + chr8_3:65770196-65770215 None:intergenic 35.0%
! TTGCTATTGTCAATCTTCGA+TGG + chr8_3:65770226-65770245 None:intergenic 35.0%
ATCGAAGATTGACAATAGCA+AGG - chr8_3:65770225-65770244 Msa1303040:intron 35.0%
AACTACACTATGCTCTATGA+AGG + chr8_3:65770414-65770433 None:intergenic 35.0%
TTCATAGAGCATAGTGTAGT+TGG - chr8_3:65770413-65770432 Msa1303040:intron 35.0%
TGCCACATAACTAGTAAATC+AGG + chr8_3:65770549-65770568 None:intergenic 35.0%
TGTGGCAAGTCTCAATTTAT+AGG - chr8_3:65770562-65770581 Msa1303040:intron 35.0%
! ATTCCTAAAGTTTTTGCTGG+TGG - chr8_3:65770591-65770610 Msa1303040:intron 35.0%
TTTCCACCAGCAAAAACTTT+AGG + chr8_3:65770597-65770616 None:intergenic 35.0%
AGCTGATTACTATGAAACTG+AGG - chr8_3:65770712-65770731 Msa1303040:intron 35.0%
! GTGTTTTCTCCTATTCCTAT+TGG + chr8_3:65770773-65770792 None:intergenic 35.0%
! TTTCGGTTCCTACTTGATTT+TGG + chr8_3:65770795-65770814 None:intergenic 35.0%
AACCGAAACTTTCACTATCA+TGG - chr8_3:65770807-65770826 Msa1303040:intron 35.0%
GAGTAAGCTAAAGCAACTTA+AGG + chr8_3:65770992-65771011 None:intergenic 35.0%
GTGCTAATTGAATTAACTGC+AGG - chr8_3:65771109-65771128 Msa1303040:CDS 35.0%
GACAGAATTGGGATATAAGA+TGG + chr8_3:65771370-65771389 None:intergenic 35.0%
AGAGCCAAGTCTAAATCCAT+AGG - chr8_3:65766191-65766210 Msa1303040:three_prime_UTR 40.0%
ACTACACAACCTTCATGTGT+AGG - chr8_3:65766417-65766436 Msa1303040:three_prime_UTR 40.0%
AAACACGGACAAGAAGACAA+AGG - chr8_3:65766451-65766470 Msa1303040:three_prime_UTR 40.0%
TGATAGCATTATCTGACCAC+TGG + chr8_3:65766545-65766564 None:intergenic 40.0%
! CACAACCTTCAAGTTTCTAC+TGG + chr8_3:65766602-65766621 None:intergenic 40.0%
!! TACTTCAATGGTGGGTTACT+TGG - chr8_3:65767187-65767206 Msa1303040:intron 40.0%
!! ACTTCAATGGTGGGTTACTT+GGG - chr8_3:65767188-65767207 Msa1303040:intron 40.0%
ATTCCCATGCACACTGAAAT+GGG + chr8_3:65767254-65767273 None:intergenic 40.0%
TGCATTGAATTTAGGTGGCT+TGG + chr8_3:65767456-65767475 None:intergenic 40.0%
GCAGTTGAAAAATGCAGATG+TGG - chr8_3:65767570-65767589 Msa1303040:intron 40.0%
TGACGCTAACACGTAGATAT+TGG - chr8_3:65767803-65767822 Msa1303040:CDS 40.0%
! ATTGAAAGCGTGCTAGTGTT+TGG + chr8_3:65767881-65767900 None:intergenic 40.0%
!! TTCCAATTGGAGGTGCTTAT+AGG - chr8_3:65768060-65768079 Msa1303040:intron 40.0%
TGCAATATGTCTGTTGAGTG+AGG + chr8_3:65768162-65768181 None:intergenic 40.0%
! ACACACACATAAGCTGACTT+AGG + chr8_3:65768282-65768301 None:intergenic 40.0%
AAGTGTGCTTGTTCTGTTTC+AGG - chr8_3:65768351-65768370 Msa1303040:intron 40.0%
! TTTTCATGAAGTAGGATCCC+AGG - chr8_3:65768592-65768611 Msa1303040:intron 40.0%
CTGCTTCATGATTTAGCAAG+TGG - chr8_3:65769130-65769149 Msa1303040:intron 40.0%
ATCCTTCGAAAGACCAAGAA+CGG + chr8_3:65769162-65769181 None:intergenic 40.0%
ACTCCCATCGAAGCAATATA+TGG + chr8_3:65769200-65769219 None:intergenic 40.0%
GATCCAAAGTCATTTGCAGT+TGG + chr8_3:65769423-65769442 None:intergenic 40.0%
TGCAAATGACTTTGGATCAG+AGG - chr8_3:65769425-65769444 Msa1303040:intron 40.0%
GATGCATACTGTCACAACAT+AGG + chr8_3:65769537-65769556 None:intergenic 40.0%
GAACATTCTACTGGATGCAA+AGG + chr8_3:65769820-65769839 None:intergenic 40.0%
CTATTGTCAATCTTCGATGG+TGG + chr8_3:65770223-65770242 None:intergenic 40.0%
ATGGAGAGTAGGGATACAAA+GGG + chr8_3:65770279-65770298 None:intergenic 40.0%
TATGGAGAGTAGGGATACAA+AGG + chr8_3:65770280-65770299 None:intergenic 40.0%
ATCACATGGTATGGAGAGTA+GGG + chr8_3:65770289-65770308 None:intergenic 40.0%
AATCACATGGTATGGAGAGT+AGG + chr8_3:65770290-65770309 None:intergenic 40.0%
GGCAGAAAGTTGTAATCACA+TGG + chr8_3:65770303-65770322 None:intergenic 40.0%
ATCAACGAGCTGCATAAGAA+AGG + chr8_3:65770357-65770376 None:intergenic 40.0%
GGAAGAGTTCCAATAGGAAT+AGG - chr8_3:65770761-65770780 Msa1303040:intron 40.0%
TGTTGTCATAGCAAACTCAG+AGG - chr8_3:65770922-65770941 Msa1303040:intron 40.0%
AAGCTAAAGCAACTTAAGGG+TGG + chr8_3:65770988-65771007 None:intergenic 40.0%
AGGCTGATAGATCATCAGAA+GGG - chr8_3:65771141-65771160 Msa1303040:CDS 40.0%
TTTCAATACAACAGTGACGC+CGG + chr8_3:65771180-65771199 None:intergenic 40.0%
! ACCATTTTACCACGGATTTG+AGG - chr8_3:65771257-65771276 Msa1303040:five_prime_UTR 40.0%
TCCTCAAATCCGTGGTAAAA+TGG + chr8_3:65771261-65771280 None:intergenic 40.0%
TGAATTGCAATCTCTCTGCA+CGG - chr8_3:65771467-65771486 Msa1303040:intron 40.0%
TACAAACGCCACGAAGTAGA+GGG + chr8_3:65766293-65766312 None:intergenic 45.0%
TTACAAACGCCACGAAGTAG+AGG + chr8_3:65766294-65766313 None:intergenic 45.0%
CGTGGCGTTTGTAACAAAAC+TGG - chr8_3:65766300-65766319 Msa1303040:three_prime_UTR 45.0%
GGCGTTTGTAACAAAACTGG+TGG - chr8_3:65766303-65766322 Msa1303040:three_prime_UTR 45.0%
!!! CTGCCATTTTTTCCGATCAC+CGG + chr8_3:65766516-65766535 None:intergenic 45.0%
TTTCTACTGGTCACCATTCC+TGG + chr8_3:65766589-65766608 None:intergenic 45.0%
GGTGACCAGTAGAAACTTGA+AGG - chr8_3:65766594-65766613 Msa1303040:intron 45.0%
! AACACTCTTGGTGCAACCAT+TGG + chr8_3:65766677-65766696 None:intergenic 45.0%
!! GTTGCACCAAGAGTGTTACT+AGG - chr8_3:65766680-65766699 Msa1303040:intron 45.0%
TACTTGGGTCCACTGTATCA+AGG - chr8_3:65767203-65767222 Msa1303040:intron 45.0%
CATTCCCATGCACACTGAAA+TGG + chr8_3:65767255-65767274 None:intergenic 45.0%
CATTTCAGTGTGCATGGGAA+TGG - chr8_3:65767253-65767272 Msa1303040:CDS 45.0%
ATAACTGCCACGACTGTACT+TGG + chr8_3:65767607-65767626 None:intergenic 45.0%
ACAGTCGTGGCAGTTATACT+TGG - chr8_3:65767610-65767629 Msa1303040:intron 45.0%
CTTAGTTAGAGGGAAGAGAC+GGG + chr8_3:65767650-65767669 None:intergenic 45.0%
GCTTAGTTAGAGGGAAGAGA+CGG + chr8_3:65767651-65767670 None:intergenic 45.0%
TTGCTCGTCGCTTAGTTAGA+GGG + chr8_3:65767660-65767679 None:intergenic 45.0%
TTTGCTCGTCGCTTAGTTAG+AGG + chr8_3:65767661-65767680 None:intergenic 45.0%
TAAGTTTGGTCACCCTGTCA+AGG - chr8_3:65767920-65767939 Msa1303040:intron 45.0%
AGCCTATAAGCACCTCCAAT+TGG + chr8_3:65768065-65768084 None:intergenic 45.0%
ATTGCACGTGCTTACAACTC+CGG - chr8_3:65768176-65768195 Msa1303040:intron 45.0%
TTGCTGCAACTCAAACTCCA+GGG - chr8_3:65768377-65768396 Msa1303040:intron 45.0%
!! CACTTTTTACCTTGTTCCCC+TGG + chr8_3:65768397-65768416 None:intergenic 45.0%
CAGGGGAACAAGGTAAAAAG+TGG - chr8_3:65768395-65768414 Msa1303040:intron 45.0%
TCCTCAATATCCTTGCTCCT+GGG + chr8_3:65768612-65768631 None:intergenic 45.0%
ATCCTCAATATCCTTGCTCC+TGG + chr8_3:65768613-65768632 None:intergenic 45.0%
CCATATAGTCCATACGGTAG+AGG + chr8_3:65768659-65768678 None:intergenic 45.0%
! CCTCTACCGTATGGACTATA+TGG - chr8_3:65768656-65768675 Msa1303040:CDS 45.0%
CACTCTTTCTTGTCTGCCAA+TGG - chr8_3:65768820-65768839 Msa1303040:intron 45.0%
CTTCATCAGACCGAAATCTG+AGG + chr8_3:65768971-65768990 None:intergenic 45.0%
CAAGTGGATACAACCGTTCT+TGG - chr8_3:65769146-65769165 Msa1303040:intron 45.0%
! AACCGTTCTTGGTCTTTCGA+AGG - chr8_3:65769157-65769176 Msa1303040:intron 45.0%
GAGCAAACAAGCTTGGCAAT+AGG + chr8_3:65769365-65769384 None:intergenic 45.0%
! TAGCACTGAGCAAACAAGCT+TGG + chr8_3:65769372-65769391 None:intergenic 45.0%
TAGCTGCTTATGGAGATGCT+AGG - chr8_3:65769675-65769694 Msa1303040:intron 45.0%
TCTCTTCAACGATTACTGGG+AGG - chr8_3:65769890-65769909 Msa1303040:intron 45.0%
AACGATTACTGGGAGGACAT+AGG - chr8_3:65769897-65769916 Msa1303040:intron 45.0%
GATACTCACATGCTCAGTGA+GGG + chr8_3:65769955-65769974 None:intergenic 45.0%
TGATACTCACATGCTCAGTG+AGG + chr8_3:65769956-65769975 None:intergenic 45.0%
ATACAGGACACAGTGATGCT+TGG - chr8_3:65770689-65770708 Msa1303040:intron 45.0%
CTATGAAACTGAGGCAGAAG+TGG - chr8_3:65770721-65770740 Msa1303040:intron 45.0%
! TTAACTGCAGGGAGTACAAG+AGG - chr8_3:65771121-65771140 Msa1303040:CDS 45.0%
GAGGCTGATAGATCATCAGA+AGG - chr8_3:65771140-65771159 Msa1303040:CDS 45.0%
! GAAGGGTTTTACATCCGTTC+CGG - chr8_3:65771158-65771177 Msa1303040:CDS 45.0%
ATTACACCCCCTCTACTTCG+TGG - chr8_3:65766282-65766301 Msa1303040:three_prime_UTR 50.0%
ACAAACGCCACGAAGTAGAG+GGG + chr8_3:65766292-65766311 None:intergenic 50.0%
! TTCCCATTTTGTCCCTCCTC+CGG - chr8_3:65766494-65766513 Msa1303040:CDS 50.0%
! TTTTTCCGATCACCGGAGGA+GGG + chr8_3:65766509-65766528 None:intergenic 50.0%
!!! TTTTTTCCGATCACCGGAGG+AGG + chr8_3:65766510-65766529 None:intergenic 50.0%
!!! CCATTTTTTCCGATCACCGG+AGG + chr8_3:65766513-65766532 None:intergenic 50.0%
CCTCCGGTGATCGGAAAAAA+TGG - chr8_3:65766510-65766529 Msa1303040:CDS 50.0%
AAAATGGCAGTCTCTGCCAG+TGG - chr8_3:65766526-65766545 Msa1303040:CDS 50.0%
GAGCTTCATGCTGCTACCAA+TGG - chr8_3:65766658-65766677 Msa1303040:intron 50.0%
CACATCAGCAGTGAGAGACA+TGG + chr8_3:65766716-65766735 None:intergenic 50.0%
CATGTCTCTCACTGCTGATG+TGG - chr8_3:65766714-65766733 Msa1303040:intron 50.0%
TGATGTGGCTAGCGAATCCA+AGG - chr8_3:65766729-65766748 Msa1303040:intron 50.0%
TGCTCCCATTTCAGTGTGCA+TGG - chr8_3:65767247-65767266 Msa1303040:CDS 50.0%
GCTCCCATTTCAGTGTGCAT+GGG - chr8_3:65767248-65767267 Msa1303040:CDS 50.0%
AAGGGATCCAAGTACAGTCG+TGG - chr8_3:65767597-65767616 Msa1303040:intron 50.0%
GTCGTGGCAGTTATACTTGG+TGG - chr8_3:65767613-65767632 Msa1303040:intron 50.0%
! GTGGCAGTTATACTTGGTGG+AGG - chr8_3:65767616-65767635 Msa1303040:intron 50.0%
! GTTATACTTGGTGGAGGAGC+TGG - chr8_3:65767622-65767641 Msa1303040:intron 50.0%
! TCCGGTACTGGAGTCACTTT+CGG - chr8_3:65768194-65768213 Msa1303040:intron 50.0%
TCCGAAAGTGACTCCAGTAC+CGG + chr8_3:65768198-65768217 None:intergenic 50.0%
! ACTGGAGTCACTTTCGGAGA+TGG - chr8_3:65768200-65768219 Msa1303040:intron 50.0%
TTTCGGAGATGGCTATGTCG+AGG - chr8_3:65768211-65768230 Msa1303040:intron 50.0%
CTTGCTGCAACTCAAACTCC+AGG - chr8_3:65768376-65768395 Msa1303040:intron 50.0%
TGCTGCAACTCAAACTCCAG+GGG - chr8_3:65768378-65768397 Msa1303040:intron 50.0%
ACTCAAACTCCAGGGGAACA+AGG - chr8_3:65768385-65768404 Msa1303040:intron 50.0%
!! AAGGTACTGCTGATGCTGTG+CGG - chr8_3:65768422-65768441 Msa1303040:intron 50.0%
!! GCAGTTTCACTGGCTCTTTG+AGG - chr8_3:65768444-65768463 Msa1303040:intron 50.0%
TCCCAGGAGCAAGGATATTG+AGG - chr8_3:65768608-65768627 Msa1303040:intron 50.0%
ATCCAGGATCATCGAGAGAG+CGG - chr8_3:65768788-65768807 Msa1303040:intron 50.0%
CTTGTCTGCCAATGGATGAC+AGG - chr8_3:65768828-65768847 Msa1303040:intron 50.0%
TCTGCCAATGGATGACAGGT+AGG - chr8_3:65768832-65768851 Msa1303040:intron 50.0%
GCAACCTACCTGTCATCCAT+TGG + chr8_3:65768839-65768858 None:intergenic 50.0%
! AATCTGAGGCGCGGCTATAA+TGG + chr8_3:65768957-65768976 None:intergenic 50.0%
TATAGCCGCGCCTCAGATTT+CGG - chr8_3:65768958-65768977 Msa1303040:intron 50.0%
! GCTTTGAGCTCTGCTCCTTT+AGG + chr8_3:65769033-65769052 None:intergenic 50.0%
AGGAGCAGAGCTCAAAGCAA+TGG - chr8_3:65769035-65769054 Msa1303040:CDS 50.0%
! GGGAGTGTACGTCTTCAAGA+AGG - chr8_3:65769214-65769233 Msa1303040:intron 50.0%
GCTGAGGGAAGAGTTCCAAT+AGG - chr8_3:65770755-65770774 Msa1303040:intron 50.0%
ATACAACAGTGACGCCGGAA+CGG + chr8_3:65771175-65771194 None:intergenic 50.0%
AAAGCTCGTCCTCAAATCCG+TGG + chr8_3:65771269-65771288 None:intergenic 50.0%
CAAACGCCACGAAGTAGAGG+GGG + chr8_3:65766291-65766310 None:intergenic 55.0%
CACCGGAGGAGGGACAAAAT+GGG + chr8_3:65766499-65766518 None:intergenic 55.0%
TCACCGGAGGAGGGACAAAA+TGG + chr8_3:65766500-65766519 None:intergenic 55.0%
TTTGTCCCTCCTCCGGTGAT+CGG - chr8_3:65766501-65766520 Msa1303040:CDS 55.0%
TCCTGGCTCACGTAGCTGAA+CGG + chr8_3:65766572-65766591 None:intergenic 55.0%
TCAGCTACGTGAGCCAGGAA+TGG - chr8_3:65766573-65766592 Msa1303040:intron 55.0%
ATGGAGGGGCCTTGATACAG+TGG + chr8_3:65767215-65767234 None:intergenic 55.0%
CGTGCTTACAACTCCGGTAC+TGG - chr8_3:65768182-65768201 Msa1303040:intron 55.0%
ATGCTGTGCGGCAGTTTCAC+TGG - chr8_3:65768434-65768453 Msa1303040:intron 55.0%
GAAGTAGGATCCCAGGAGCA+AGG - chr8_3:65768599-65768618 Msa1303040:intron 55.0%
TGGGGATCACCTCTACCGTA+TGG - chr8_3:65768647-65768666 Msa1303040:intron 55.0%
! TCAGACCGAAATCTGAGGCG+CGG + chr8_3:65768966-65768985 None:intergenic 55.0%
AGTGGCAGCACAGTTAGCTG+AGG - chr8_3:65770739-65770758 Msa1303040:intron 55.0%
GTGGCAGCACAGTTAGCTGA+GGG - chr8_3:65770740-65770759 Msa1303040:intron 55.0%
ACCGTTCAGCTACGTGAGCC+AGG - chr8_3:65766568-65766587 Msa1303040:intron 60.0%
CACCGCTCTCTCGATGATCC+TGG + chr8_3:65768793-65768812 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 65766188 65771524 65766188 ID=Msa1303040;Name=Msa1303040
chr8_3 mRNA 65766188 65771524 65766188 ID=Msa1303040-mRNA-1;Parent=Msa1303040;Name=Msa1303040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=293|1|1|1|0.93|0.87|16|292|521
chr8_3 exon 65766188 65766581 65766188 ID=Msa1303040-mRNA-1:exon:19987;Parent=Msa1303040-mRNA-1
chr8_3 exon 65766769 65766829 65766769 ID=Msa1303040-mRNA-1:exon:19986;Parent=Msa1303040-mRNA-1
chr8_3 exon 65766911 65767017 65766911 ID=Msa1303040-mRNA-1:exon:19985;Parent=Msa1303040-mRNA-1
chr8_3 exon 65767240 65767344 65767240 ID=Msa1303040-mRNA-1:exon:19984;Parent=Msa1303040-mRNA-1
chr8_3 exon 65767466 65767552 65767466 ID=Msa1303040-mRNA-1:exon:19983;Parent=Msa1303040-mRNA-1
chr8_3 exon 65767747 65767827 65767747 ID=Msa1303040-mRNA-1:exon:19982;Parent=Msa1303040-mRNA-1
chr8_3 exon 65768230 65768302 65768230 ID=Msa1303040-mRNA-1:exon:19981;Parent=Msa1303040-mRNA-1
chr8_3 exon 65768454 65768566 65768454 ID=Msa1303040-mRNA-1:exon:19980;Parent=Msa1303040-mRNA-1
chr8_3 exon 65768656 65768749 65768656 ID=Msa1303040-mRNA-1:exon:19979;Parent=Msa1303040-mRNA-1
chr8_3 exon 65768863 65768918 65768863 ID=Msa1303040-mRNA-1:exon:19978;Parent=Msa1303040-mRNA-1
chr8_3 exon 65769023 65769106 65769023 ID=Msa1303040-mRNA-1:exon:19977;Parent=Msa1303040-mRNA-1
chr8_3 exon 65769247 65769339 65769247 ID=Msa1303040-mRNA-1:exon:19976;Parent=Msa1303040-mRNA-1
chr8_3 exon 65769480 65769653 65769480 ID=Msa1303040-mRNA-1:exon:19975;Parent=Msa1303040-mRNA-1
chr8_3 exon 65770025 65770138 65770025 ID=Msa1303040-mRNA-1:exon:19974;Parent=Msa1303040-mRNA-1
chr8_3 exon 65770962 65771463 65770962 ID=Msa1303040-mRNA-1:exon:19973;Parent=Msa1303040-mRNA-1
chr8_3 exon 65771512 65771524 65771512 ID=Msa1303040-mRNA-1:exon:19972;Parent=Msa1303040-mRNA-1
chr8_3 five_prime_UTR 65771512 65771524 65771512 ID=Msa1303040-mRNA-1:five_prime_utr;Parent=Msa1303040-mRNA-1
chr8_3 five_prime_UTR 65771184 65771463 65771184 ID=Msa1303040-mRNA-1:five_prime_utr;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65770962 65771183 65770962 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65770025 65770138 65770025 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65769480 65769653 65769480 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65769247 65769339 65769247 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65769023 65769106 65769023 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65768863 65768918 65768863 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65768656 65768749 65768656 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65768454 65768566 65768454 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65768230 65768302 65768230 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65767747 65767827 65767747 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65767466 65767552 65767466 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65767240 65767344 65767240 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65766911 65767017 65766911 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65766769 65766829 65766769 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 CDS 65766480 65766581 65766480 ID=Msa1303040-mRNA-1:cds;Parent=Msa1303040-mRNA-1
chr8_3 three_prime_UTR 65766188 65766479 65766188 ID=Msa1303040-mRNA-1:three_prime_utr;Parent=Msa1303040-mRNA-1
Gene Sequence

>Msa1303040

ATGGCAGTCTCTGCCAGTGGTCAGATAATGCTATCATCTACCGTTCAGCTACGTGAGCCAGGAATGGTGACCAGTAGAAACTTGAAGGTTGTGAAGTTTTGTAATGGAGAAATGATGGGACGAAAGATTGAGCTTCATGCTGCTACCAATGGTTGCACCAAGAGTGTTACTAGGAAAAATATATCCATGTCTCTCACTGCTGATGTGGCTAGCGAATCCAAGTTGAAAAATGCAGATGTGGAAAAAAGGGATCCAAGTACAGTCGTGGCAGTTATACTTGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTAACTAAGCGACGAGCAAAGCCTGCTGTTCCAATTGGAGGTGCTTATAGGCTGATTGATGTGCCAATGAGTAACTGCATCAATAGTGGGATCAACAAAGTGTATATTCTCACTCAGTTTAATTCAGCCTCACTCAACAGACATATTGCACGTGCTTACAACTCCGGTACTGGAGTCACTTTCGGAGATGGCTATGTCGAGGTTCTTGCTGCAACTCAAACTCCAGGGGAACAAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGCGGCAGTTTCACTGGCTCTTTGAGGATCCCAGGAGCAAGGATATTGAGGATGTTTTGATTCTTTCTGGGGATCACCTCTACCGTATGGACTATATGGACTTTGTTAGAGATCATCGAGAGAGCGGTGCAGATATCACTCTTTCTTGTCTGCCAATGGATGACAGCCGCGCCTCAGATTTCGGTCTGATGAAGATTGACAACAAAGGAAGGATCCTTTCATTTAGTGAAAAGCCTAAAGGAGCAGAGCTCAAAGCAATGCAAGTGGATACAACCGTTCTTGGTCTTTCGAAGGATGAAGCTCTAGAAAAACCATATATTGCTTCGATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTAAGATGGCGCTTTCCAACTGCAAATGACTTTGGATCAGAGGTCATTCCTGCCTCAGCTAAAGAATTTTACATGAAGGCTTATCTCTTCAACGATTACTGGGAGGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTAGCCCTCACTGAGCATCCATCCAAGTTTAGCTTTTACGATGCAGCAAAACCTATGTACACATCAAGGAGAAATTTACCACCATCGAAGATTGACAATAGCAAGCTCGTTGATTCAATTATATCACATGGAAGCTTCGTGAATAATGCCTTCATAGAGCATAGTGTAGTTGGAATCAGATCAAGAATAAACTCAAATGTTCATTTAAAGGACACAGTGATGCTTGGAGCTGATTACTATGAAACTGAGGCAGAAGTGGCAGCACAGTTAGCTGAGGGAAGAGTTCCAATAGGAATAGGAGAAAACACCAAAATCAAAGACTGTATTATTGACAAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAACTCAGAGGGAGTACAAGAGGCTGATAGATCATCAGAAGGGTTTTACATCCGTTCCGGCGTCACTGTTGTATTGAAAAATTCAACAATTGAAGACGGGCTCGTCATATAA

Protein sequence

>Msa1303040

MAVSASGQIMLSSTVQLREPGMVTSRNLKVVKFCNGEMMGRKIELHAATNGCTKSVTRKNISMSLTADVASESKLKNADVEKRDPSTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGTGVTFGDGYVEVLAATQTPGEQGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVRDHRESGADITLSCLPMDDSRASDFGLMKIDNKGRILSFSEKPKGAELKAMQVDTTVLGLSKDEALEKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAKEFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPSKFSFYDAAKPMYTSRRNLPPSKIDNSKLVDSIISHGSFVNNAFIEHSVVGIRSRINSNVHLKDTVMLGADYYETEAEVAAQLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYIRSGVTVVLKNSTIEDGLVI*