Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797310 | XP_003611484.1 | 93.261 | 371 | 2 | 1 | 1 | 348 | 1 | 371 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797310 | G7JZY8 | 93.261 | 371 | 2 | 1 | 1 | 348 | 1 | 371 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044700 | Msa0797310 | 0.832632 | 8.461744e-56 | -8.615850e-47 |
| Msa0058140 | Msa0797310 | 0.800224 | 1.593623e-48 | -8.615850e-47 |
| Msa0061560 | Msa0797310 | 0.807144 | 5.833764e-50 | -8.615850e-47 |
| Msa0065190 | Msa0797310 | 0.825726 | 4.005319e-54 | -8.615850e-47 |
| Msa0655150 | Msa0797310 | 0.830229 | 3.303238e-55 | -8.615850e-47 |
| Msa0754840 | Msa0797310 | 0.814472 | 1.514168e-51 | -8.615850e-47 |
| Msa0761360 | Msa0797310 | 0.800249 | 1.574908e-48 | -8.615850e-47 |
| Msa0797310 | Msa0848780 | 0.817013 | 4.109223e-52 | -8.615850e-47 |
| Msa0797310 | Msa0849080 | 0.804435 | 2.163350e-49 | -8.615850e-47 |
| Msa0797310 | Msa0906180 | 0.806467 | 8.111561e-50 | -8.615850e-47 |
| Msa0797310 | Msa0938190 | 0.833055 | 6.642418e-56 | -8.615850e-47 |
| Msa0797310 | Msa1032760 | 0.807564 | 4.753293e-50 | -8.615850e-47 |
| Msa0797310 | Msa1113860 | 0.827166 | 1.817509e-54 | -8.615850e-47 |
| Msa0797310 | Msa1213550 | 0.820149 | 7.988448e-53 | -8.615850e-47 |
| Msa0797310 | Msa1223050 | 0.802226 | 6.203529e-49 | -8.615850e-47 |
| Msa0797310 | Msa1239000 | 0.840303 | 9.432061e-58 | -8.615850e-47 |
| Msa0797310 | Msa1247540 | 0.817139 | 3.850530e-52 | -8.615850e-47 |
| Msa0797310 | Msa1248220 | 0.817242 | 3.650691e-52 | -8.615850e-47 |
| Msa0797310 | Msa1303040 | 0.840228 | 9.867612e-58 | -8.615850e-47 |
| Msa0797310 | Msa1331400 | 0.820771 | 5.750352e-53 | -8.615850e-47 |
| Msa0797310 | Msa1358790 | 0.810934 | 9.006548e-51 | -8.615850e-47 |
| Msa0797310 | Msa1422150 | 0.848790 | 4.894794e-60 | -8.615850e-47 |
| Msa0797310 | Msa1435990 | 0.818294 | 2.113238e-52 | -8.615850e-47 |
| Msa0797310 | Msa1452860 | 0.948507 | 8.226658e-107 | -8.615850e-47 |
| Msa0220110 | Msa0797310 | 0.826315 | 2.902838e-54 | -8.615850e-47 |
| Msa0364870 | Msa0797310 | 0.827685 | 1.364916e-54 | -8.615850e-47 |
| Msa0366120 | Msa0797310 | 0.809097 | 2.238783e-50 | -8.615850e-47 |
| Msa0369100 | Msa0797310 | 0.806374 | 8.483930e-50 | -8.615850e-47 |
| Msa0369430 | Msa0797310 | 0.827072 | 1.914899e-54 | -8.615850e-47 |
| Msa0370690 | Msa0797310 | 0.852296 | 5.067485e-61 | -8.615850e-47 |
| Msa0373950 | Msa0797310 | 0.812204 | 4.769654e-51 | -8.615850e-47 |
| Msa0416060 | Msa0797310 | 0.803241 | 3.828758e-49 | -8.615850e-47 |
| Msa0417990 | Msa0797310 | -0.801876 | 7.320068e-49 | -8.615850e-47 |
| Msa0452300 | Msa0797310 | 0.828567 | 8.365686e-55 | -8.615850e-47 |
| Msa0463140 | Msa0797310 | 0.822905 | 1.844009e-53 | -8.615850e-47 |
| Msa0463150 | Msa0797310 | 0.815237 | 1.024748e-51 | -8.615850e-47 |
| Msa0465640 | Msa0797310 | 0.801731 | 7.840236e-49 | -8.615850e-47 |
| Msa0297860 | Msa0797310 | 0.831367 | 1.737680e-55 | -8.615850e-47 |
| Msa0349450 | Msa0797310 | 0.808587 | 2.878479e-50 | -8.615850e-47 |
| Msa0561760 | Msa0797310 | 0.832829 | 7.562832e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797310 | MtrunA17_Chr5g0400591 | 93.261 | 371 | 2 | 1 | 1 | 348 | 1 | 371 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797310 | AT2G35260.1 | 65.269 | 334 | 77 | 7 | 24 | 325 | 32 | 358 | 4.51e-134 | 387 |
| Msa0797310 | AT4G17840.1 | 68.905 | 283 | 65 | 1 | 89 | 348 | 139 | 421 | 1.14e-131 | 382 |
Find 100 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGCAAAGATTGTAAT+TGG | 0.146192 | 5_3:+9379231 | None:intergenic |
| TGCTTTGTTTCAGGGATTTA+TGG | 0.164753 | 5_3:-9382142 | Msa0797310:intron |
| TGCTCTACAAAGACTGATTT+TGG | 0.172656 | 5_3:-9379471 | Msa0797310:three_prime_UTR |
| ACATGACACGATGAAGTTTA+AGG | 0.200475 | 5_3:+9382918 | None:intergenic |
| GATTTACTCAACTGTTATAT+TGG | 0.204944 | 5_3:-9379592 | Msa0797310:CDS |
| TTAAGGTTTGAGGTTGAAAT+TGG | 0.220673 | 5_3:+9382935 | None:intergenic |
| AAAAGAATTCAAATTCAAAA+TGG | 0.222221 | 5_3:+9382765 | None:intergenic |
| CTATGGCATGTCCCCTTTGC+AGG | 0.237654 | 5_3:-9381436 | Msa0797310:intron |
| CTTCTACAGGGCTGCAGTTC+AGG | 0.247355 | 5_3:-9381281 | Msa0797310:intron |
| TGCTGCTGACTTTCCTGTTT+GGG | 0.252831 | 5_3:-9382462 | Msa0797310:CDS |
| ATATGCAGTTCCTCCAATTA+TGG | 0.280024 | 5_3:-9382020 | Msa0797310:CDS |
| TTTCTTCTGATTTGAGTTGT+TGG | 0.290631 | 5_3:+9379517 | None:intergenic |
| CCCACTTCTGGAAGGACTAT+TGG | 0.291896 | 5_3:-9379783 | Msa0797310:CDS |
| GTGCTGCTGACTTTCCTGTT+TGG | 0.306301 | 5_3:-9382463 | Msa0797310:CDS |
| TTATATTGGGACATGGTCTT+TGG | 0.310446 | 5_3:-9379578 | Msa0797310:CDS |
| GTACTTACAGCTGTCCTTAC+TGG | 0.313443 | 5_3:-9380623 | Msa0797310:CDS |
| ATTTACTCAACTGTTATATT+GGG | 0.314030 | 5_3:-9379591 | Msa0797310:CDS |
| GATGCTATTGTTCAAGGGCT+TGG | 0.328172 | 5_3:-9382043 | Msa0797310:CDS |
| TTACTGGAATTGACTCTCTT+GGG | 0.331878 | 5_3:-9382084 | Msa0797310:CDS |
| TGTCTCACCTCTGTCATCTA+TGG | 0.342156 | 5_3:+9382559 | None:intergenic |
| ATGTAGAGGATGAAGAACTA+TGG | 0.367296 | 5_3:-9381467 | Msa0797310:CDS |
| TATGGTGCTATGGCTGTTGC+GGG | 0.376737 | 5_3:-9382124 | Msa0797310:CDS |
| ATTACTGGAATTGACTCTCT+TGG | 0.377179 | 5_3:-9382085 | Msa0797310:CDS |
| TTGTTGTTCATGTTGAGGTT+TGG | 0.408486 | 5_3:+9382807 | None:intergenic |
| CAATAGCATCTAATGATAGA+TGG | 0.409928 | 5_3:+9382056 | None:intergenic |
| TCATTAGATGCTATTGTTCA+AGG | 0.413215 | 5_3:-9382049 | Msa0797310:CDS |
| AGAGCATTTCAAAATCTAGT+TGG | 0.419832 | 5_3:+9379488 | None:intergenic |
| CTTCAAGAGTTGTTTCTGTT+CGG | 0.420358 | 5_3:-9382616 | Msa0797310:CDS |
| AAAGAATTCAAATTCAAAAT+GGG | 0.424360 | 5_3:+9382766 | None:intergenic |
| TTTATCAAATTACCTGCAAA+GGG | 0.425420 | 5_3:+9381424 | None:intergenic |
| CTAGCACGAGATTGTAAAAC+AGG | 0.433223 | 5_3:+9380440 | None:intergenic |
| AATTTCATCAAAGGAAGAAA+AGG | 0.433452 | 5_3:-9382655 | Msa0797310:CDS |
| TACTGGTTCTCTCTATTATG+TGG | 0.435452 | 5_3:-9380606 | Msa0797310:CDS |
| TTAAAGCAAAGATTGTAATT+GGG | 0.443507 | 5_3:+9379232 | None:intergenic |
| GACAGAGGTGAGACAAGAAC+CGG | 0.445196 | 5_3:-9382551 | Msa0797310:CDS |
| GCTGCAAGTGCCTGAGCAAA+TGG | 0.445585 | 5_3:+9380647 | None:intergenic |
| TGCTGCAAGTTCGGTGGGAG+AGG | 0.446375 | 5_3:-9381308 | Msa0797310:CDS |
| TGGGAGAGGAGCTCTTCTAC+AGG | 0.448169 | 5_3:-9381294 | Msa0797310:CDS |
| TAAATCCCATGTGTGATAAT+CGG | 0.449306 | 5_3:+9379609 | None:intergenic |
| ATCTCTAATGGCACGGGCAT+AGG | 0.451890 | 5_3:+9381488 | None:intergenic |
| ACCATTTGTTCCATTTGCTC+AGG | 0.457763 | 5_3:-9380657 | Msa0797310:CDS |
| TGAGAGAGTGAAGTTGAAGA+AGG | 0.458614 | 5_3:+9382695 | None:intergenic |
| ACGATGAAGTTTAAGGTTTG+AGG | 0.460432 | 5_3:+9382925 | None:intergenic |
| TTCATCCTCTACATCTCTAA+TGG | 0.465534 | 5_3:+9381476 | None:intergenic |
| AGTGAAGTTGAAGAAGGGTT+TGG | 0.467254 | 5_3:+9382701 | None:intergenic |
| ACTGATGGTTGCTGCAAGTT+CGG | 0.469127 | 5_3:-9381317 | Msa0797310:CDS |
| GCCAATAGTCCTTCCAGAAG+TGG | 0.470965 | 5_3:+9379782 | None:intergenic |
| ACGACCATCGGCGAAGACTA+AGG | 0.473052 | 5_3:-9379548 | Msa0797310:CDS |
| GTTCACTACACCTGCAGCTA+TGG | 0.474623 | 5_3:-9382528 | Msa0797310:CDS |
| AAAGCTTCTGCAGAGAGAAC+TGG | 0.475828 | 5_3:-9382587 | Msa0797310:CDS |
| TTATGGTGCTATGGCTGTTG+CGG | 0.483548 | 5_3:-9382125 | Msa0797310:CDS |
| TCTCTAATGGCACGGGCATA+GGG | 0.483690 | 5_3:+9381489 | None:intergenic |
| GAGAGAGTGAAGTTGAAGAA+GGG | 0.488119 | 5_3:+9382696 | None:intergenic |
| TTTCCTGTTTGGGAAAAGAT+TGG | 0.488590 | 5_3:-9382452 | Msa0797310:CDS |
| TTCAGGGATTTATGGTGCTA+TGG | 0.492125 | 5_3:-9382134 | Msa0797310:intron |
| GCCTGAGCAAATGGAACAAA+TGG | 0.495910 | 5_3:+9380656 | None:intergenic |
| GAACAACAAGAACAAAGATT+CGG | 0.497320 | 5_3:+9382842 | None:intergenic |
| TAATTTACAGTTTATACTGA+TGG | 0.502909 | 5_3:-9381332 | Msa0797310:intron |
| TACTGGAATTGACTCTCTTG+GGG | 0.509127 | 5_3:-9382083 | Msa0797310:CDS |
| TTGCAGCATGGTATGAGAAA+AGG | 0.509827 | 5_3:-9379826 | Msa0797310:intron |
| CATTAGATGCTATTGTTCAA+GGG | 0.510033 | 5_3:-9382048 | Msa0797310:CDS |
| TTGGTGTTAGTGTTAGAGAA+AGG | 0.510398 | 5_3:+9382720 | None:intergenic |
| ATTTCATCAAAGGAAGAAAA+GGG | 0.510946 | 5_3:-9382654 | Msa0797310:CDS |
| CTTTCTCCGATTATCACACA+TGG | 0.513149 | 5_3:-9379615 | Msa0797310:CDS |
| CCAATAGTCCTTCCAGAAGT+GGG | 0.521288 | 5_3:+9379783 | None:intergenic |
| CTCTACATCTCTAATGGCAC+GGG | 0.530651 | 5_3:+9381482 | None:intergenic |
| TGATGTTGTTGTTCATGTTG+AGG | 0.533132 | 5_3:+9382802 | None:intergenic |
| TATGTGGCTGCCTCTCCTAA+AGG | 0.540575 | 5_3:-9380590 | Msa0797310:intron |
| GTTAGACTCAGCTATGGAAT+CGG | 0.541683 | 5_3:-9382422 | Msa0797310:intron |
| ACAGGTGCAACAATATAAGT+AGG | 0.544789 | 5_3:+9380458 | None:intergenic |
| AGCTGCAGGTGTAGTGAACC+CGG | 0.554325 | 5_3:+9382532 | None:intergenic |
| TCTGCCTTAGTCTTCGCCGA+TGG | 0.560456 | 5_3:+9379544 | None:intergenic |
| AAAAGAAGAGCCATAATTGG+AGG | 0.560506 | 5_3:+9382010 | None:intergenic |
| CATAATAGAGAGAACCAGTA+AGG | 0.561668 | 5_3:+9380609 | None:intergenic |
| CCTCTACATCTCTAATGGCA+CGG | 0.562261 | 5_3:+9381481 | None:intergenic |
| GTGGTGACTTCCATAGCTGC+AGG | 0.567391 | 5_3:+9382518 | None:intergenic |
| GATGGTTGCTGCAAGTTCGG+TGG | 0.571035 | 5_3:-9381314 | Msa0797310:CDS |
| CGTGGTTTCAATGATGCTGC+TGG | 0.572740 | 5_3:-9382485 | Msa0797310:CDS |
| ATCTATTCCCCACTTCTGGA+AGG | 0.575982 | 5_3:-9379791 | Msa0797310:CDS |
| ACTGGAATTGACTCTCTTGG+GGG | 0.580200 | 5_3:-9382082 | Msa0797310:CDS |
| GGACTATTGGCTCTCTACCT+CGG | 0.580542 | 5_3:-9379770 | Msa0797310:CDS |
| AGCTATGTGAATTTCATCAA+AGG | 0.595654 | 5_3:-9382664 | Msa0797310:CDS |
| CCGTGCCATTAGAGATGTAG+AGG | 0.596524 | 5_3:-9381481 | Msa0797310:CDS |
| GGGAGAGGAGCTCTTCTACA+GGG | 0.602260 | 5_3:-9381293 | Msa0797310:CDS |
| ATGGTTGCTGCAAGTTCGGT+GGG | 0.610676 | 5_3:-9381313 | Msa0797310:CDS |
| GCTGTTGTTAGACTCAGCTA+TGG | 0.613019 | 5_3:-9382428 | Msa0797310:CDS |
| TTTCTCCGATTATCACACAT+GGG | 0.632019 | 5_3:-9379614 | Msa0797310:CDS |
| TTTGGAAGATACACGACCAT+CGG | 0.640254 | 5_3:-9379560 | Msa0797310:CDS |
| TCAACTGTTATATTGGGACA+TGG | 0.640865 | 5_3:-9379585 | Msa0797310:CDS |
| CAGCAGCATCATTGAAACCA+CGG | 0.669168 | 5_3:+9382486 | None:intergenic |
| CAATAGTCCTTCCAGAAGTG+GGG | 0.670663 | 5_3:+9379784 | None:intergenic |
| ACAGAGGTGAGACAAGAACC+GGG | 0.671283 | 5_3:-9382550 | Msa0797310:CDS |
| ATTGAAACCACGGTTGAATG+TGG | 0.675695 | 5_3:+9382496 | None:intergenic |
| GTCACCACCACATTCAACCG+TGG | 0.675824 | 5_3:-9382503 | Msa0797310:CDS |
| TGAGCAAATGGAACAAATGG+TGG | 0.702641 | 5_3:+9380659 | None:intergenic |
| TTATCAAATTACCTGCAAAG+GGG | 0.706347 | 5_3:+9381425 | None:intergenic |
| CTTGGATCCACTCAAAACCG+AGG | 0.711747 | 5_3:+9379753 | None:intergenic |
| ATGGTGCTATGGCTGTTGCG+GGG | 0.715398 | 5_3:-9382123 | Msa0797310:CDS |
| GGTGATACCATAGATGACAG+AGG | 0.725756 | 5_3:-9382566 | Msa0797310:CDS |
| GAAACCACGGTTGAATGTGG+TGG | 0.735030 | 5_3:+9382499 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAAAACGTAATTAAA+GGG | + | chr5_3:9381414-9381433 | None:intergenic | 10.0% |
| !! | AAAGAATTCAAATTCAAAAT+GGG | + | chr5_3:9379394-9379413 | None:intergenic | 15.0% |
| !! | AAAAGAATTCAAATTCAAAA+TGG | + | chr5_3:9379395-9379414 | None:intergenic | 15.0% |
| !!! | TTTTTCTTAATTGAATTGAA+TGG | - | chr5_3:9379413-9379432 | Msa0797310:three_prime_UTR | 15.0% |
| !!! | GAAATTTTGATTTTGTTTAT+TGG | - | chr5_3:9379936-9379955 | Msa0797310:intron | 15.0% |
| !! | CATATACTTTAGTATAAAAA+AGG | + | chr5_3:9380190-9380209 | None:intergenic | 15.0% |
| !! | AATAAAACATAAAGTCAAAT+TGG | + | chr5_3:9380423-9380442 | None:intergenic | 15.0% |
| !!! | GGAAATTTTTGTATTAAATA+GGG | - | chr5_3:9380548-9380567 | Msa0797310:intron | 15.0% |
| !! | ATTAATTAAATCAATGTCAA+TGG | + | chr5_3:9380803-9380822 | None:intergenic | 15.0% |
| !!! | AATTTAGTTTTGTGAAAAAA+AGG | - | chr5_3:9381070-9381089 | Msa0797310:intron | 15.0% |
| !! | ATTTATAATTTGAATTCTAC+AGG | - | chr5_3:9381145-9381164 | Msa0797310:intron | 15.0% |
| !! | TTTATAATTTGAATTCTACA+GGG | - | chr5_3:9381146-9381165 | Msa0797310:intron | 15.0% |
| !! | GTAATATAAAACGTAATTAA+AGG | + | chr5_3:9381415-9381434 | None:intergenic | 15.0% |
| !! | TATAAGAAAAATTTACCTTT+AGG | + | chr5_3:9381585-9381604 | None:intergenic | 15.0% |
| !! | TAATGGAATATAATATTCAA+CGG | + | chr5_3:9381791-9381810 | None:intergenic | 15.0% |
| !! | TTTCAAAAGATAAAGTAAAT+AGG | + | chr5_3:9382434-9382453 | None:intergenic | 15.0% |
| !!! | TACTGTTTTGTAATAAAAAT+TGG | - | chr5_3:9382853-9382872 | Msa0797310:five_prime_UTR | 15.0% |
| !! | TTCAGCAAAAATATACAAAA+GGG | + | chr5_3:9379800-9379819 | None:intergenic | 20.0% |
| !! | TTTCAGCAAAAATATACAAA+AGG | + | chr5_3:9379801-9379820 | None:intergenic | 20.0% |
| !! | AAAATGAATATTTGCTTTGT+TGG | - | chr5_3:9379819-9379838 | Msa0797310:CDS | 20.0% |
| !!! | ATGTTTTTCTTTTTCCAAAA+TGG | - | chr5_3:9379913-9379932 | Msa0797310:intron | 20.0% |
| !!! | TGTTTTTCTTTTTCCAAAAT+GGG | - | chr5_3:9379914-9379933 | Msa0797310:intron | 20.0% |
| !!! | AAAATCAAAATTTCCCATTT+TGG | + | chr5_3:9379930-9379949 | None:intergenic | 20.0% |
| !!! | GAATTCAATTGTTATTTGTA+TGG | - | chr5_3:9379970-9379989 | Msa0797310:intron | 20.0% |
| !!! | TTAATAAATTGCTTTGTTTC+AGG | - | chr5_3:9380006-9380025 | Msa0797310:intron | 20.0% |
| !!! | TAATAAATTGCTTTGTTTCA+GGG | - | chr5_3:9380007-9380026 | Msa0797310:intron | 20.0% |
| !! | TACTAAAGTATATGATGATA+AGG | - | chr5_3:9380196-9380215 | Msa0797310:intron | 20.0% |
| !!! | GGGAAATTTTTGTATTAAAT+AGG | - | chr5_3:9380547-9380566 | Msa0797310:intron | 20.0% |
| !! | TAATTTACAGTTTATACTGA+TGG | - | chr5_3:9380825-9380844 | Msa0797310:intron | 20.0% |
| !! | ATATATACGTAATCTTATAC+AGG | + | chr5_3:9380949-9380968 | None:intergenic | 20.0% |
| !! | TTATAATTTGAATTCTACAG+GGG | - | chr5_3:9381147-9381166 | Msa0797310:intron | 20.0% |
| !!! | AATCTAACTTGTGATTTATA+CGG | - | chr5_3:9381453-9381472 | Msa0797310:CDS | 20.0% |
| !! | ATCAATTAGAACAGATATAA+TGG | + | chr5_3:9381808-9381827 | None:intergenic | 20.0% |
| !!! | GATGAATTTTATATACTTCA+AGG | + | chr5_3:9381984-9382003 | None:intergenic | 20.0% |
| !! | ATAAAGTAAATAGGATTACT+TGG | + | chr5_3:9382425-9382444 | None:intergenic | 20.0% |
| !!! | AGTTTTGTCTAAAATTTCTA+AGG | - | chr5_3:9382463-9382482 | Msa0797310:CDS | 20.0% |
| !!! | AACTAATTTGTGTTTATGTT+TGG | - | chr5_3:9382491-9382510 | Msa0797310:CDS | 20.0% |
| !! | ATTTACTCAACTGTTATATT+GGG | - | chr5_3:9382566-9382585 | Msa0797310:CDS | 20.0% |
| !!! | TATTAATTTTACACAGCTTT+TGG | + | chr5_3:9382885-9382904 | None:intergenic | 20.0% |
| !! | TTAAAGCAAAGATTGTAATT+GGG | + | chr5_3:9382928-9382947 | None:intergenic | 20.0% |
| !!! | TTTAAAGCAAAGATTGTAAT+TGG | + | chr5_3:9382929-9382948 | None:intergenic | 20.0% |
| !! | TTTTATTGATATCTACGAAG+TGG | + | chr5_3:9379292-9379311 | None:intergenic | 25.0% |
| ! | AATTTCATCAAAGGAAGAAA+AGG | - | chr5_3:9379502-9379521 | Msa0797310:exon | 25.0% |
| ! | ATTTCATCAAAGGAAGAAAA+GGG | - | chr5_3:9379503-9379522 | Msa0797310:CDS | 25.0% |
| !!! | GAACTTTTTGGAATCAATTT+TGG | - | chr5_3:9379761-9379780 | Msa0797310:CDS | 25.0% |
| !!! | TTTGTAGCTTTTTAGCTAAT+TGG | - | chr5_3:9379861-9379880 | Msa0797310:intron | 25.0% |
| !!! | TTGTAGCTTTTTAGCTAATT+GGG | - | chr5_3:9379862-9379881 | Msa0797310:intron | 25.0% |
| !!! | AGTTTTATATGTTCGATTAC+TGG | - | chr5_3:9380057-9380076 | Msa0797310:intron | 25.0% |
| ! | ATAAAAAGAAGAGCCATAAT+TGG | + | chr5_3:9380153-9380172 | None:intergenic | 25.0% |
| ! | TCTCAACTTAACCAAAATAT+GGG | + | chr5_3:9380266-9380285 | None:intergenic | 25.0% |
| ! | ATCTCAACTTAACCAAAATA+TGG | + | chr5_3:9380267-9380286 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCAATCAAAAC+AGG | + | chr5_3:9380300-9380319 | None:intergenic | 25.0% |
| ! | TAATTAAACGCTTATAGCAT+AGG | + | chr5_3:9380477-9380496 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr5_3:9380494-9380513 | Msa0797310:intron | 25.0% |
| ! | TTAGCATGGGATATATTTAT+TGG | - | chr5_3:9380526-9380545 | Msa0797310:intron | 25.0% |
| ! | TAGCATGGGATATATTTATT+GGG | - | chr5_3:9380527-9380546 | Msa0797310:intron | 25.0% |
| ! | TCATCAACATGGTTATTATT+AGG | - | chr5_3:9380625-9380644 | Msa0797310:CDS | 25.0% |
| ! | TTTATCAAATTACCTGCAAA+GGG | + | chr5_3:9380736-9380755 | None:intergenic | 25.0% |
| !! | TTTTATCAAATTACCTGCAA+AGG | + | chr5_3:9380737-9380756 | None:intergenic | 25.0% |
| ! | AAATATGAATCTTGATTGTG+TGG | - | chr5_3:9380970-9380989 | Msa0797310:intron | 25.0% |
| !!! | TTAGTTTTGTGAAAAAAAGG+AGG | - | chr5_3:9381073-9381092 | Msa0797310:intron | 25.0% |
| !! | TGCTAGCTTAATAATCTTAA+TGG | - | chr5_3:9381100-9381119 | Msa0797310:intron | 25.0% |
| ! | TATAATTTGAATTCTACAGG+GGG | - | chr5_3:9381148-9381167 | Msa0797310:intron | 25.0% |
| !! | TTTTCTTTCTTGTGTTAGAA+GGG | - | chr5_3:9381258-9381277 | Msa0797310:intron | 25.0% |
| ! | TATAAAACGTAATTAAAGGG+AGG | + | chr5_3:9381411-9381430 | None:intergenic | 25.0% |
| ! | TGAGAAGAAAAAATGTAAAG+CGG | + | chr5_3:9381610-9381629 | None:intergenic | 25.0% |
| ! | ATATACTTTAGTAAAGTGAC+AGG | - | chr5_3:9382060-9382079 | Msa0797310:CDS | 25.0% |
| ! | TACTTTAGGTACTAAATTGA+TGG | - | chr5_3:9382148-9382167 | Msa0797310:intron | 25.0% |
| !! | TGTCTAAAATTTCTAAGGAA+TGG | - | chr5_3:9382468-9382487 | Msa0797310:CDS | 25.0% |
| ! | GATTTACTCAACTGTTATAT+TGG | - | chr5_3:9382565-9382584 | Msa0797310:CDS | 25.0% |
| !!! | CAAAGTTTTGATTACATTAC+AGG | - | chr5_3:9382802-9382821 | Msa0797310:five_prime_UTR | 25.0% |
| ! | TTAAGGTTTGAGGTTGAAAT+TGG | + | chr5_3:9379225-9379244 | None:intergenic | 30.0% |
| GAACAACAAGAACAAAGATT+CGG | + | chr5_3:9379318-9379337 | None:intergenic | 30.0% | |
| AGCTATGTGAATTTCATCAA+AGG | - | chr5_3:9379493-9379512 | Msa0797310:exon | 30.0% | |
| CTAATTGGGTCAAACAAAAA+AGG | - | chr5_3:9379876-9379895 | Msa0797310:intron | 30.0% | |
| GTTATTTGTATGGTGCAATT+TGG | - | chr5_3:9379980-9379999 | Msa0797310:intron | 30.0% | |
| CAATAGCATCTAATGATAGA+TGG | + | chr5_3:9380104-9380123 | None:intergenic | 30.0% | |
| TCATTAGATGCTATTGTTCA+AGG | - | chr5_3:9380108-9380127 | Msa0797310:intron | 30.0% | |
| CATTAGATGCTATTGTTCAA+GGG | - | chr5_3:9380109-9380128 | Msa0797310:intron | 30.0% | |
| ! | TTTCGTTCAATCCCATATTT+TGG | - | chr5_3:9380252-9380271 | Msa0797310:intron | 30.0% |
| ATATCCCATGCTAAAGATTA+AGG | + | chr5_3:9380520-9380539 | None:intergenic | 30.0% | |
| TTGATGAAAGCTCAATTCAT+GGG | + | chr5_3:9380612-9380631 | None:intergenic | 30.0% | |
| !!! | GAACTATGGAGTTTTTTCTA+TGG | - | chr5_3:9380704-9380723 | Msa0797310:intron | 30.0% |
| TTATCAAATTACCTGCAAAG+GGG | + | chr5_3:9380735-9380754 | None:intergenic | 30.0% | |
| ! | TTGATAAAACTTGCTTGCTT+TGG | - | chr5_3:9380748-9380767 | Msa0797310:intron | 30.0% |
| TAAGAGATCTCTCACTTTAA+CGG | - | chr5_3:9380907-9380926 | Msa0797310:intron | 30.0% | |
| TATACGTAATCTTATACAGG+TGG | + | chr5_3:9380946-9380965 | None:intergenic | 30.0% | |
| AATCTTATACAAGATGTTCG+AGG | - | chr5_3:9381200-9381219 | Msa0797310:intron | 30.0% | |
| CTTCTAACACAAGAAAGAAA+AGG | + | chr5_3:9381259-9381278 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTCTTGTGTTAGA+AGG | - | chr5_3:9381257-9381276 | Msa0797310:intron | 30.0% |
| CTAATGACTGTTATGTCAAA+AGG | + | chr5_3:9381313-9381332 | None:intergenic | 30.0% | |
| !! | TAACAGTCATTAGTTCTAGT+CGG | - | chr5_3:9381320-9381339 | Msa0797310:CDS | 30.0% |
| ! | GAAAAATTTACCTTTAGGAG+AGG | + | chr5_3:9381580-9381599 | None:intergenic | 30.0% |
| GAGAAGAAAAAATGTAAAGC+GGG | + | chr5_3:9381609-9381628 | None:intergenic | 30.0% | |
| GATTTGAAAAAGCTGTTTGA+AGG | - | chr5_3:9381747-9381766 | Msa0797310:intron | 30.0% | |
| GGAATATAATATTCAACGGT+AGG | + | chr5_3:9381787-9381806 | None:intergenic | 30.0% | |
| TGGGTTAAAATCTTCATCAA+GGG | - | chr5_3:9381843-9381862 | Msa0797310:intron | 30.0% | |
| ! | ATATACTTTAGGGACCAAAT+TGG | + | chr5_3:9381945-9381964 | None:intergenic | 30.0% |
| TCCCTACTATTAAGATGTTA+GGG | - | chr5_3:9382011-9382030 | Msa0797310:CDS | 30.0% | |
| TCCCTAACATCTTAATAGTA+GGG | + | chr5_3:9382015-9382034 | None:intergenic | 30.0% | |
| GGGACAAATCAAATATATGA+CGG | - | chr5_3:9382031-9382050 | Msa0797310:CDS | 30.0% | |
| GGTTTATTCAATAGTTTCTC+AGG | - | chr5_3:9382169-9382188 | Msa0797310:intron | 30.0% | |
| AAACCAAAAATAAGTGGATC+AGG | + | chr5_3:9382313-9382332 | None:intergenic | 30.0% | |
| TAAATCCCATGTGTGATAAT+CGG | + | chr5_3:9382551-9382570 | None:intergenic | 30.0% | |
| !! | TTTCTTCTGATTTGAGTTGT+TGG | + | chr5_3:9382643-9382662 | None:intergenic | 30.0% |
| ! | AGAGCATTTCAAAATCTAGT+TGG | + | chr5_3:9382672-9382691 | None:intergenic | 30.0% |
| ! | ACGATGAAGTTTAAGGTTTG+AGG | + | chr5_3:9379235-9379254 | None:intergenic | 35.0% |
| ACATGACACGATGAAGTTTA+AGG | + | chr5_3:9379242-9379261 | None:intergenic | 35.0% | |
| ! | TTGTTGTTCATGTTGAGGTT+TGG | + | chr5_3:9379353-9379372 | None:intergenic | 35.0% |
| ! | TGATGTTGTTGTTCATGTTG+AGG | + | chr5_3:9379358-9379377 | None:intergenic | 35.0% |
| !! | TTGGTGTTAGTGTTAGAGAA+AGG | + | chr5_3:9379440-9379459 | None:intergenic | 35.0% |
| !! | CTTCAAGAGTTGTTTCTGTT+CGG | - | chr5_3:9379541-9379560 | Msa0797310:CDS | 35.0% |
| TTTCCTGTTTGGGAAAAGAT+TGG | - | chr5_3:9379705-9379724 | Msa0797310:intron | 35.0% | |
| !! | TGCTTTGTTTCAGGGATTTA+TGG | - | chr5_3:9380015-9380034 | Msa0797310:intron | 35.0% |
| ! | ATTACTGGAATTGACTCTCT+TGG | - | chr5_3:9380072-9380091 | Msa0797310:intron | 35.0% |
| ! | TTACTGGAATTGACTCTCTT+GGG | - | chr5_3:9380073-9380092 | Msa0797310:intron | 35.0% |
| ATATGCAGTTCCTCCAATTA+TGG | - | chr5_3:9380137-9380156 | Msa0797310:intron | 35.0% | |
| AAAAGAAGAGCCATAATTGG+AGG | + | chr5_3:9380150-9380169 | None:intergenic | 35.0% | |
| !! | GGTTAAGTTGAGATGCATTT+AGG | - | chr5_3:9380273-9380292 | Msa0797310:intron | 35.0% |
| CTTATTTCCGTAAGCTCTAT+TGG | - | chr5_3:9380362-9380381 | Msa0797310:intron | 35.0% | |
| AACCTATCCAATAGAGCTTA+CGG | + | chr5_3:9380372-9380391 | None:intergenic | 35.0% | |
| AAGCTCTATTGGATAGGTTA+TGG | - | chr5_3:9380373-9380392 | Msa0797310:intron | 35.0% | |
| CTAAAGATTAAGGCCATGTT+TGG | + | chr5_3:9380510-9380529 | None:intergenic | 35.0% | |
| ! | ATGGCCTTAATCTTTAGCAT+GGG | - | chr5_3:9380513-9380532 | Msa0797310:intron | 35.0% |
| ! | GTTGATGAAAGCTCAATTCA+TGG | + | chr5_3:9380613-9380632 | None:intergenic | 35.0% |
| GAATTGAGCTTTCATCAACA+TGG | - | chr5_3:9380614-9380633 | Msa0797310:CDS | 35.0% | |
| TTCATCCTCTACATCTCTAA+TGG | + | chr5_3:9380684-9380703 | None:intergenic | 35.0% | |
| ATGTAGAGGATGAAGAACTA+TGG | - | chr5_3:9380690-9380709 | Msa0797310:intron | 35.0% | |
| TCAATGGTTGCACTAGATTA+AGG | + | chr5_3:9380787-9380806 | None:intergenic | 35.0% | |
| AAGAGATCTCTCACTTTAAC+GGG | - | chr5_3:9380908-9380927 | Msa0797310:intron | 35.0% | |
| !! | ACACAGAAAGTACTCATGAT+TGG | + | chr5_3:9381018-9381037 | None:intergenic | 35.0% |
| !! | CTGGCTGATATATTTTTACG+AGG | - | chr5_3:9381173-9381192 | Msa0797310:intron | 35.0% |
| TATACAAGATGTTCGAGGAA+TGG | - | chr5_3:9381205-9381224 | Msa0797310:intron | 35.0% | |
| TTATACGGTAATATGCAGAC+AGG | - | chr5_3:9381468-9381487 | Msa0797310:CDS | 35.0% | |
| TATACGGTAATATGCAGACA+GGG | - | chr5_3:9381469-9381488 | Msa0797310:CDS | 35.0% | |
| CATAATAGAGAGAACCAGTA+AGG | + | chr5_3:9381551-9381570 | None:intergenic | 35.0% | |
| !! | TACTGGTTCTCTCTATTATG+TGG | - | chr5_3:9381551-9381570 | Msa0797310:intron | 35.0% |
| GATGGTAATCATTAATCAGC+TGG | + | chr5_3:9381660-9381679 | None:intergenic | 35.0% | |
| TCTGAAAGAGAGAAAAGAGA+TGG | + | chr5_3:9381678-9381697 | None:intergenic | 35.0% | |
| ACAGGTGCAACAATATAAGT+AGG | + | chr5_3:9381702-9381721 | None:intergenic | 35.0% | |
| !! | TTGATAACGTTCTAGTCAAG+TGG | - | chr5_3:9381823-9381842 | Msa0797310:intron | 35.0% |
| ! | TGATAACGTTCTAGTCAAGT+GGG | - | chr5_3:9381824-9381843 | Msa0797310:intron | 35.0% |
| ! | GTGGGTTAAAATCTTCATCA+AGG | - | chr5_3:9381842-9381861 | Msa0797310:intron | 35.0% |
| GTCCCTACTATTAAGATGTT+AGG | - | chr5_3:9382010-9382029 | Msa0797310:CDS | 35.0% | |
| GTCCCTAACATCTTAATAGT+AGG | + | chr5_3:9382016-9382035 | None:intergenic | 35.0% | |
| TGAAGAGAGATCGATACTTT+AGG | - | chr5_3:9382134-9382153 | Msa0797310:intron | 35.0% | |
| CATTCGAAAACGATGAAACA+TGG | + | chr5_3:9382234-9382253 | None:intergenic | 35.0% | |
| ! | TTCATCGTTTTCGAATGTGA+CGG | - | chr5_3:9382237-9382256 | Msa0797310:intron | 35.0% |
| GTGACGGTTCAGAAATAAAA+AGG | - | chr5_3:9382253-9382272 | Msa0797310:intron | 35.0% | |
| !! | CAACCTGATCCACTTATTTT+TGG | - | chr5_3:9382307-9382326 | Msa0797310:intron | 35.0% |
| TGCTGCAAACCAAAAATAAG+TGG | + | chr5_3:9382319-9382338 | None:intergenic | 35.0% | |
| !!! | CTTATTTTTGGTTTGCAGCA+TGG | - | chr5_3:9382319-9382338 | Msa0797310:intron | 35.0% |
| AAAAATCTATTCCCCACTTC+TGG | - | chr5_3:9382362-9382381 | Msa0797310:intron | 35.0% | |
| TTTCTCCGATTATCACACAT+GGG | - | chr5_3:9382543-9382562 | Msa0797310:CDS | 35.0% | |
| TCAACTGTTATATTGGGACA+TGG | - | chr5_3:9382572-9382591 | Msa0797310:CDS | 35.0% | |
| TTATATTGGGACATGGTCTT+TGG | - | chr5_3:9382579-9382598 | Msa0797310:CDS | 35.0% | |
| !! | TGCTCTACAAAGACTGATTT+TGG | - | chr5_3:9382686-9382705 | Msa0797310:CDS | 35.0% |
| !!! | TGGTTTTGTGTGGTGAGTTT+TGG | + | chr5_3:9379272-9379291 | None:intergenic | 40.0% |
| !!! | ATCTACGAAGTGGTTTTGTG+TGG | + | chr5_3:9379282-9379301 | None:intergenic | 40.0% |
| AGTGAAGTTGAAGAAGGGTT+TGG | + | chr5_3:9379459-9379478 | None:intergenic | 40.0% | |
| GAGAGAGTGAAGTTGAAGAA+GGG | + | chr5_3:9379464-9379483 | None:intergenic | 40.0% | |
| TGAGAGAGTGAAGTTGAAGA+AGG | + | chr5_3:9379465-9379484 | None:intergenic | 40.0% | |
| ATTGAAACCACGGTTGAATG+TGG | + | chr5_3:9379664-9379683 | None:intergenic | 40.0% | |
| GTTAGACTCAGCTATGGAAT+CGG | - | chr5_3:9379735-9379754 | Msa0797310:intron | 40.0% | |
| ! | TGGAATCGGTGAGAACTTTT+TGG | - | chr5_3:9379749-9379768 | Msa0797310:intron | 40.0% |
| ! | TTCAGGGATTTATGGTGCTA+TGG | - | chr5_3:9380023-9380042 | Msa0797310:intron | 40.0% |
| ! | TACTGGAATTGACTCTCTTG+GGG | - | chr5_3:9380074-9380093 | Msa0797310:intron | 40.0% |
| TTCCGTAAGCTCTATTGGAT+AGG | - | chr5_3:9380367-9380386 | Msa0797310:intron | 40.0% | |
| ! | CATGGCCTTAATCTTTAGCA+TGG | - | chr5_3:9380512-9380531 | Msa0797310:intron | 40.0% |
| AGCTCAATTCATGGGAACAA+AGG | + | chr5_3:9380604-9380623 | None:intergenic | 40.0% | |
| !! | CAGAAAGTACTCATGATTGG+AGG | + | chr5_3:9381015-9381034 | None:intergenic | 40.0% |
| CTTACCCTCTTTAATGTCCT+TGG | - | chr5_3:9381385-9381404 | Msa0797310:intron | 40.0% | |
| ATACGGTAATATGCAGACAG+GGG | - | chr5_3:9381470-9381489 | Msa0797310:CDS | 40.0% | |
| TGAGCAAATGGAACAAATGG+TGG | + | chr5_3:9381501-9381520 | None:intergenic | 40.0% | |
| ACCATTTGTTCCATTTGCTC+AGG | - | chr5_3:9381500-9381519 | Msa0797310:CDS | 40.0% | |
| AATCAGCTGGAGAACAAACT+AGG | + | chr5_3:9381647-9381666 | None:intergenic | 40.0% | |
| CTAGCACGAGATTGTAAAAC+AGG | + | chr5_3:9381720-9381739 | None:intergenic | 40.0% | |
| TTGGAGAGAGTGATACTGTA+TGG | + | chr5_3:9381926-9381945 | None:intergenic | 40.0% | |
| CAGTATCACTCTCTCCAATT+TGG | - | chr5_3:9381928-9381947 | Msa0797310:intron | 40.0% | |
| ATCACAAGCAGAAAATGCAC+AGG | + | chr5_3:9382283-9382302 | None:intergenic | 40.0% | |
| TTGCAGCATGGTATGAGAAA+AGG | - | chr5_3:9382331-9382350 | Msa0797310:intron | 40.0% | |
| CTTTCTCCGATTATCACACA+TGG | - | chr5_3:9382542-9382561 | Msa0797310:CDS | 40.0% | |
| TTTGGAAGATACACGACCAT+CGG | - | chr5_3:9382597-9382616 | Msa0797310:CDS | 40.0% | |
| AAAGCTTCTGCAGAGAGAAC+TGG | - | chr5_3:9379570-9379589 | Msa0797310:CDS | 45.0% | |
| GGTGATACCATAGATGACAG+AGG | - | chr5_3:9379591-9379610 | Msa0797310:CDS | 45.0% | |
| TGTCTCACCTCTGTCATCTA+TGG | + | chr5_3:9379601-9379620 | None:intergenic | 45.0% | |
| CAGCAGCATCATTGAAACCA+CGG | + | chr5_3:9379674-9379693 | None:intergenic | 45.0% | |
| !! | TGCTGCTGACTTTCCTGTTT+GGG | - | chr5_3:9379695-9379714 | Msa0797310:intron | 45.0% |
| ! | GCACCAATCTTTTCCCAAAC+AGG | + | chr5_3:9379711-9379730 | None:intergenic | 45.0% |
| GCTGTTGTTAGACTCAGCTA+TGG | - | chr5_3:9379729-9379748 | Msa0797310:intron | 45.0% | |
| !! | TTATGGTGCTATGGCTGTTG+CGG | - | chr5_3:9380032-9380051 | Msa0797310:intron | 45.0% |
| ! | ACTGGAATTGACTCTCTTGG+GGG | - | chr5_3:9380075-9380094 | Msa0797310:intron | 45.0% |
| GATGCTATTGTTCAAGGGCT+TGG | - | chr5_3:9380114-9380133 | Msa0797310:intron | 45.0% | |
| CTCTACATCTCTAATGGCAC+GGG | + | chr5_3:9380678-9380697 | None:intergenic | 45.0% | |
| CCTCTACATCTCTAATGGCA+CGG | + | chr5_3:9380679-9380698 | None:intergenic | 45.0% | |
| ACTGATGGTTGCTGCAAGTT+CGG | - | chr5_3:9380840-9380859 | Msa0797310:intron | 45.0% | |
| ! | TGAGCCTTGGTGCAATAGTA+AGG | - | chr5_3:9381281-9381300 | Msa0797310:intron | 45.0% |
| GCAACCTTACTATTGCACCA+AGG | + | chr5_3:9381288-9381307 | None:intergenic | 45.0% | |
| AAACAACCCTCTCGACTTTC+AGG | - | chr5_3:9381345-9381364 | Msa0797310:intron | 45.0% | |
| AACAACCCTCTCGACTTTCA+GGG | - | chr5_3:9381346-9381365 | Msa0797310:intron | 45.0% | |
| GAGGCCAAGGACATTAAAGA+GGG | + | chr5_3:9381392-9381411 | None:intergenic | 45.0% | |
| ACGTAATTAAAGGGAGGCCA+AGG | + | chr5_3:9381405-9381424 | None:intergenic | 45.0% | |
| GCCTGAGCAAATGGAACAAA+TGG | + | chr5_3:9381504-9381523 | None:intergenic | 45.0% | |
| GTACTTACAGCTGTCCTTAC+TGG | - | chr5_3:9381534-9381553 | Msa0797310:intron | 45.0% | |
| ATCTATTCCCCACTTCTGGA+AGG | - | chr5_3:9382366-9382385 | Msa0797310:intron | 45.0% | |
| CAATAGTCCTTCCAGAAGTG+GGG | + | chr5_3:9382376-9382395 | None:intergenic | 45.0% | |
| CCAATAGTCCTTCCAGAAGT+GGG | + | chr5_3:9382377-9382396 | None:intergenic | 45.0% | |
| !! | TATTATATTTATATACTTTA+GGG | + | chr5_3:9381955-9381974 | None:intergenic | 5.0% |
| !! | TTATTATATTTATATACTTT+AGG | + | chr5_3:9381956-9381975 | None:intergenic | 5.0% |
| GACAGAGGTGAGACAAGAAC+CGG | - | chr5_3:9379606-9379625 | Msa0797310:CDS | 50.0% | |
| ACAGAGGTGAGACAAGAACC+GGG | - | chr5_3:9379607-9379626 | Msa0797310:CDS | 50.0% | |
| GTTCACTACACCTGCAGCTA+TGG | - | chr5_3:9379629-9379648 | Msa0797310:CDS | 50.0% | |
| GAAACCACGGTTGAATGTGG+TGG | + | chr5_3:9379661-9379680 | None:intergenic | 50.0% | |
| CGTGGTTTCAATGATGCTGC+TGG | - | chr5_3:9379672-9379691 | Msa0797310:intron | 50.0% | |
| !! | GTGCTGCTGACTTTCCTGTT+TGG | - | chr5_3:9379694-9379713 | Msa0797310:intron | 50.0% |
| !! | TATGGTGCTATGGCTGTTGC+GGG | - | chr5_3:9380033-9380052 | Msa0797310:intron | 50.0% |
| TCTCTAATGGCACGGGCATA+GGG | + | chr5_3:9380671-9380690 | None:intergenic | 50.0% | |
| ATCTCTAATGGCACGGGCAT+AGG | + | chr5_3:9380672-9380691 | None:intergenic | 50.0% | |
| ! | CCGTGCCATTAGAGATGTAG+AGG | - | chr5_3:9380676-9380695 | Msa0797310:intron | 50.0% |
| ATGGTTGCTGCAAGTTCGGT+GGG | - | chr5_3:9380844-9380863 | Msa0797310:intron | 50.0% | |
| ! | TTGAATTCTACAGGGGGCAC+TGG | - | chr5_3:9381154-9381173 | Msa0797310:intron | 50.0% |
| TGTTCGAGGAATGGCGTCTT+TGG | - | chr5_3:9381214-9381233 | Msa0797310:intron | 50.0% | |
| TGTGTTAGAAGGGTGAGCCT+TGG | - | chr5_3:9381268-9381287 | Msa0797310:intron | 50.0% | |
| CTTAGCCCTGAAAGTCGAGA+GGG | + | chr5_3:9381354-9381373 | None:intergenic | 50.0% | |
| GGAGGCCAAGGACATTAAAG+AGG | + | chr5_3:9381393-9381412 | None:intergenic | 50.0% | |
| TATGTGGCTGCCTCTCCTAA+AGG | - | chr5_3:9381567-9381586 | Msa0797310:intron | 50.0% | |
| ! | CCCACTTCTGGAAGGACTAT+TGG | - | chr5_3:9382374-9382393 | Msa0797310:intron | 50.0% |
| GCCAATAGTCCTTCCAGAAG+TGG | + | chr5_3:9382378-9382397 | None:intergenic | 50.0% | |
| !! | GGACTATTGGCTCTCTACCT+CGG | - | chr5_3:9382387-9382406 | Msa0797310:intron | 50.0% |
| !!! | CTCTCTACCTCGGTTTTGAG+TGG | - | chr5_3:9382397-9382416 | Msa0797310:intron | 50.0% |
| CTTGGATCCACTCAAAACCG+AGG | + | chr5_3:9382407-9382426 | None:intergenic | 50.0% | |
| AGCTGCAGGTGTAGTGAACC+CGG | + | chr5_3:9379628-9379647 | None:intergenic | 55.0% | |
| GTGGTGACTTCCATAGCTGC+AGG | + | chr5_3:9379642-9379661 | None:intergenic | 55.0% | |
| GTCACCACCACATTCAACCG+TGG | - | chr5_3:9379654-9379673 | Msa0797310:intron | 55.0% | |
| !! | ATGGTGCTATGGCTGTTGCG+GGG | - | chr5_3:9380034-9380053 | Msa0797310:intron | 55.0% |
| CTATGGCATGTCCCCTTTGC+AGG | - | chr5_3:9380721-9380740 | Msa0797310:intron | 55.0% | |
| GATGGTTGCTGCAAGTTCGG+TGG | - | chr5_3:9380843-9380862 | Msa0797310:intron | 55.0% | |
| TGGGAGAGGAGCTCTTCTAC+AGG | - | chr5_3:9380863-9380882 | Msa0797310:intron | 55.0% | |
| GGGAGAGGAGCTCTTCTACA+GGG | - | chr5_3:9380864-9380883 | Msa0797310:intron | 55.0% | |
| CTTCTACAGGGCTGCAGTTC+AGG | - | chr5_3:9380876-9380895 | Msa0797310:intron | 55.0% | |
| CCTTAGCCCTGAAAGTCGAG+AGG | + | chr5_3:9381355-9381374 | None:intergenic | 55.0% | |
| CCTCTCGACTTTCAGGGCTA+AGG | - | chr5_3:9381352-9381371 | Msa0797310:intron | 55.0% | |
| GCTGCAAGTGCCTGAGCAAA+TGG | + | chr5_3:9381513-9381532 | None:intergenic | 55.0% | |
| ACGACCATCGGCGAAGACTA+AGG | - | chr5_3:9382609-9382628 | Msa0797310:CDS | 55.0% | |
| ! | TCTGCCTTAGTCTTCGCCGA+TGG | + | chr5_3:9382616-9382635 | None:intergenic | 55.0% |
| ! | TGCTGCAAGTTCGGTGGGAG+AGG | - | chr5_3:9380849-9380868 | Msa0797310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9379213 | 9382966 | 9379213 | ID=Msa0797310;Name=Msa0797310 |
| chr5_3 | mRNA | 9379213 | 9382966 | 9379213 | ID=Msa0797310-mRNA-1;Parent=Msa0797310;Name=Msa0797310-mRNA-1;_AED=0.12;_eAED=0.12;_QI=219|0.85|1|1|1|1|8|290|348 |
| chr5_3 | exon | 9379213 | 9379649 | 9379213 | ID=Msa0797310-mRNA-1:exon:4095;Parent=Msa0797310-mRNA-1 |
| chr5_3 | exon | 9379754 | 9379842 | 9379754 | ID=Msa0797310-mRNA-1:exon:4094;Parent=Msa0797310-mRNA-1 |
| chr5_3 | exon | 9380411 | 9380482 | 9380411 | ID=Msa0797310-mRNA-1:exon:4093;Parent=Msa0797310-mRNA-1 |
| chr5_3 | exon | 9380591 | 9380693 | 9380591 | ID=Msa0797310-mRNA-1:exon:4092;Parent=Msa0797310-mRNA-1 |
| chr5_3 | exon | 9381282 | 9381344 | 9381282 | ID=Msa0797310-mRNA-1:exon:4091;Parent=Msa0797310-mRNA-1 |
| chr5_3 | exon | 9381437 | 9381532 | 9381437 | ID=Msa0797310-mRNA-1:exon:4090;Parent=Msa0797310-mRNA-1 |
| chr5_3 | exon | 9382000 | 9382151 | 9382000 | ID=Msa0797310-mRNA-1:exon:4089;Parent=Msa0797310-mRNA-1 |
| chr5_3 | exon | 9382423 | 9382966 | 9382423 | ID=Msa0797310-mRNA-1:exon:4088;Parent=Msa0797310-mRNA-1 |
| chr5_3 | five_prime_UTR | 9382748 | 9382966 | 9382748 | ID=Msa0797310-mRNA-1:five_prime_utr;Parent=Msa0797310-mRNA-1 |
| chr5_3 | CDS | 9382423 | 9382747 | 9382423 | ID=Msa0797310-mRNA-1:cds;Parent=Msa0797310-mRNA-1 |
| chr5_3 | CDS | 9382000 | 9382151 | 9382000 | ID=Msa0797310-mRNA-1:cds;Parent=Msa0797310-mRNA-1 |
| chr5_3 | CDS | 9381437 | 9381532 | 9381437 | ID=Msa0797310-mRNA-1:cds;Parent=Msa0797310-mRNA-1 |
| chr5_3 | CDS | 9381282 | 9381344 | 9381282 | ID=Msa0797310-mRNA-1:cds;Parent=Msa0797310-mRNA-1 |
| chr5_3 | CDS | 9380591 | 9380693 | 9380591 | ID=Msa0797310-mRNA-1:cds;Parent=Msa0797310-mRNA-1 |
| chr5_3 | CDS | 9380411 | 9380482 | 9380411 | ID=Msa0797310-mRNA-1:cds;Parent=Msa0797310-mRNA-1 |
| chr5_3 | CDS | 9379754 | 9379842 | 9379754 | ID=Msa0797310-mRNA-1:cds;Parent=Msa0797310-mRNA-1 |
| chr5_3 | CDS | 9379503 | 9379649 | 9379503 | ID=Msa0797310-mRNA-1:cds;Parent=Msa0797310-mRNA-1 |
| chr5_3 | three_prime_UTR | 9379213 | 9379502 | 9379213 | ID=Msa0797310-mRNA-1:three_prime_utr;Parent=Msa0797310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
