Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375910 | XP_003602194.1 | 97.872 | 329 | 7 | 0 | 1 | 329 | 1 | 329 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375910 | sp|Q700C7|SPCH_ARATH | 56.806 | 382 | 94 | 13 | 1 | 329 | 1 | 364 | 1.86e-111 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375910 | G7J6A1 | 97.872 | 329 | 7 | 0 | 1 | 329 | 1 | 329 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0375910 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197100 | Msa0375910 | 0.807866 | 4.100047e-50 | -8.615850e-47 |
| Msa0212080 | Msa0375910 | 0.805545 | 1.267740e-49 | -8.615850e-47 |
| Msa0375890 | Msa0375910 | 0.954074 | 6.693140e-112 | -8.615850e-47 |
| Msa0375910 | Msa0385390 | 0.804424 | 2.174792e-49 | -8.615850e-47 |
| Msa0375910 | Msa0406000 | 0.807823 | 4.186633e-50 | -8.615850e-47 |
| Msa0375910 | Msa0415320 | 0.832157 | 1.109331e-55 | -8.615850e-47 |
| Msa0375910 | Msa0451400 | 0.825856 | 3.730164e-54 | -8.615850e-47 |
| Msa0375910 | Msa0492190 | 0.805893 | 1.071540e-49 | -8.615850e-47 |
| Msa0375910 | Msa0523000 | 0.828851 | 7.145583e-55 | -8.615850e-47 |
| Msa0375910 | Msa0534930 | 0.825740 | 3.974680e-54 | -8.615850e-47 |
| Msa0375910 | Msa0591790 | 0.808199 | 3.482019e-50 | -8.615850e-47 |
| Msa0375910 | Msa0669840 | 0.818701 | 1.708340e-52 | -8.615850e-47 |
| Msa0375910 | Msa0819890 | 0.835258 | 1.863170e-56 | -8.615850e-47 |
| Msa0375910 | Msa0961560 | 0.805206 | 1.493313e-49 | -8.615850e-47 |
| Msa0375910 | Msa1037910 | 0.805685 | 1.184527e-49 | -8.615850e-47 |
| Msa0375910 | Msa1084520 | 0.807671 | 4.510115e-50 | -8.615850e-47 |
| Msa0375910 | Msa1169990 | 0.821681 | 3.548576e-53 | -8.615850e-47 |
| Msa0375910 | Msa1171310 | 0.805469 | 1.314817e-49 | -8.615850e-47 |
| Msa0375910 | Msa1201110 | 0.805203 | 1.495361e-49 | -8.615850e-47 |
| Msa0375910 | Msa1275820 | 0.809088 | 2.249308e-50 | -8.615850e-47 |
| Msa0375910 | Msa1313970 | 0.805650 | 1.205162e-49 | -8.615850e-47 |
| Msa0239030 | Msa0375910 | 0.813156 | 2.951877e-51 | -8.615850e-47 |
| Msa0276740 | Msa0375910 | 0.801329 | 9.481061e-49 | -8.615850e-47 |
| Msa0316680 | Msa0375910 | 0.800741 | 1.250203e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375910 | MtrunA17_Chr3g0126381 | 98.000 | 200 | 4 | 0 | 130 | 329 | 1 | 200 | 1.47e-139 | 393 |
| Msa0375910 | MtrunA17_Chr1g0158941 | 61.468 | 327 | 74 | 13 | 5 | 328 | 15 | 292 | 6.26e-108 | 316 |
| Msa0375910 | MtrunA17_Chr3g0126361 | 96.212 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 7.15e-89 | 263 |
| Msa0375910 | MtrunA17_Chr2g0287761 | 49.123 | 228 | 73 | 4 | 101 | 328 | 1 | 185 | 1.12e-62 | 197 |
| Msa0375910 | MtrunA17_Chr0c01g0489461 | 39.015 | 264 | 124 | 5 | 63 | 326 | 161 | 387 | 1.21e-49 | 170 |
| Msa0375910 | MtrunA17_Chr3g0132471 | 35.341 | 249 | 121 | 7 | 77 | 324 | 96 | 305 | 1.44e-37 | 136 |
| Msa0375910 | MtrunA17_Chr1g0191571 | 36.441 | 236 | 100 | 5 | 99 | 327 | 134 | 326 | 2.38e-36 | 134 |
| Msa0375910 | MtrunA17_Chr8g0366551 | 37.563 | 197 | 82 | 3 | 99 | 295 | 122 | 277 | 6.20e-36 | 132 |
| Msa0375910 | MtrunA17_Chr7g0273081 | 31.544 | 298 | 158 | 7 | 30 | 326 | 49 | 301 | 6.24e-36 | 132 |
| Msa0375910 | MtrunA17_Chr5g0426851 | 30.034 | 293 | 157 | 9 | 19 | 309 | 23 | 269 | 2.06e-31 | 119 |
| Msa0375910 | MtrunA17_Chr8g0345871 | 75.000 | 48 | 12 | 0 | 99 | 146 | 179 | 226 | 1.94e-19 | 87.8 |
| Msa0375910 | MtrunA17_Chr8g0345871 | 41.758 | 91 | 51 | 2 | 239 | 328 | 269 | 358 | 2.37e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375910 | AT5G53210.1 | 56.806 | 382 | 94 | 13 | 1 | 329 | 1 | 364 | 1.89e-112 | 331 |
| Msa0375910 | AT5G53210.2 | 54.144 | 362 | 95 | 13 | 1 | 309 | 1 | 344 | 4.14e-95 | 286 |
| Msa0375910 | AT3G06120.1 | 44.737 | 228 | 90 | 3 | 101 | 328 | 1 | 192 | 8.84e-58 | 186 |
| Msa0375910 | AT1G72210.1 | 32.314 | 229 | 111 | 5 | 99 | 326 | 123 | 308 | 1.85e-30 | 118 |
| Msa0375910 | AT1G72210.2 | 32.547 | 212 | 98 | 4 | 99 | 309 | 123 | 290 | 4.48e-29 | 114 |
| Msa0375910 | AT3G24140.1 | 56.122 | 98 | 37 | 2 | 70 | 167 | 172 | 263 | 2.43e-28 | 114 |
| Msa0375910 | AT3G24140.1 | 48.913 | 92 | 46 | 1 | 237 | 328 | 303 | 393 | 9.28e-18 | 84.0 |
| Msa0375910 | AT3G24140.2 | 56.122 | 98 | 37 | 2 | 70 | 167 | 172 | 263 | 2.48e-28 | 114 |
| Msa0375910 | AT3G24140.2 | 48.913 | 92 | 46 | 1 | 237 | 328 | 303 | 393 | 7.33e-18 | 84.0 |
| Msa0375910 | AT4G01460.1 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.76e-24 | 100 |
| Msa0375910 | AT4G01460.2 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.76e-24 | 100 |
| Msa0375910 | AT1G22490.1 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 3.30e-23 | 97.8 |
| Msa0375910 | AT1G22490.2 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 7.37e-23 | 97.4 |
| Msa0375910 | AT5G46690.1 | 32.627 | 236 | 105 | 6 | 99 | 317 | 86 | 284 | 9.69e-23 | 97.1 |
| Msa0375910 | AT5G46690.2 | 33.898 | 177 | 75 | 4 | 99 | 269 | 86 | 226 | 2.03e-22 | 95.5 |
| Msa0375910 | AT3G61950.6 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.61e-21 | 93.2 |
| Msa0375910 | AT3G61950.2 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 2.09e-21 | 93.2 |
| Msa0375910 | AT3G61950.3 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 4.39e-21 | 92.8 |
| Msa0375910 | AT3G61950.1 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 4.67e-21 | 92.8 |
| Msa0375910 | AT2G46810.2 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 7.13e-21 | 91.3 |
| Msa0375910 | AT2G46810.4 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 1.18e-20 | 91.3 |
| Msa0375910 | AT2G46810.3 | 60.317 | 63 | 25 | 0 | 99 | 161 | 179 | 241 | 2.04e-20 | 90.9 |
| Msa0375910 | AT2G46810.1 | 60.317 | 63 | 25 | 0 | 99 | 161 | 191 | 253 | 2.41e-20 | 90.9 |
| Msa0375910 | AT5G65320.2 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 1.78e-16 | 78.6 |
| Msa0375910 | AT5G65320.1 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 2.74e-16 | 78.6 |
Find 56 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGACAGAACAGAATT+TGG | 0.163384 | 3_1:+75877017 | Msa0375910:CDS |
| TGATGATCTCTTTGCCATTT+TGG | 0.180476 | 3_1:+75877046 | Msa0375910:CDS |
| CTAGTTGGTTGTGGAGTTCT+TGG | 0.246531 | 3_1:-75879144 | None:intergenic |
| TTCTTTGTTTCTTGGCTTCA+AGG | 0.259040 | 3_1:-75879014 | None:intergenic |
| CCATTGGAAAAGATTGAAAA+TGG | 0.259280 | 3_1:-75876974 | None:intergenic |
| TGTGGAGTTCTTGGACTAAT+TGG | 0.288248 | 3_1:-75879135 | None:intergenic |
| GTTTCTTGGCTTCAAGGGCT+TGG | 0.301870 | 3_1:-75879008 | None:intergenic |
| GAAGTGACCTCATTCTCTTT+TGG | 0.319139 | 3_1:-75877125 | None:intergenic |
| GGAGATCAAGCATCAATAAT+TGG | 0.321601 | 3_1:+75878946 | Msa0375910:CDS |
| ACATTTCTGCATTCTGTCTC+TGG | 0.331551 | 3_1:+75876876 | Msa0375910:five_prime_UTR |
| TGTTGCATTCTTGGCTTGTA+AGG | 0.333897 | 3_1:-75879168 | None:intergenic |
| CTTGGACTTGGAACTAATCT+TGG | 0.340912 | 3_1:-75879060 | None:intergenic |
| AACTTGAAACTGAACCTAAA+AGG | 0.343348 | 3_1:+75877204 | Msa0375910:CDS |
| AAAAGATTGAAAATGGAAAA+AGG | 0.346247 | 3_1:-75876967 | None:intergenic |
| AAGTTTAGTCTTGGACTTAG+AGG | 0.354427 | 3_1:-75879111 | None:intergenic |
| ATCTTCTAGACTCTCCAAAA+TGG | 0.357616 | 3_1:-75877060 | None:intergenic |
| GGACTTAGTGGTGAAGGTCT+TGG | 0.391894 | 3_1:-75879078 | None:intergenic |
| ACTGTTTCTCAACGAATTCC+AGG | 0.392508 | 3_1:+75879342 | Msa0375910:CDS |
| CTTGGCTTGTAAGGACTAGT+TGG | 0.398269 | 3_1:-75879159 | None:intergenic |
| CTAATTGGCAAGTTTAGTCT+TGG | 0.398977 | 3_1:-75879120 | None:intergenic |
| TCATATAAGCTTTCTTCCAT+TGG | 0.406925 | 3_1:-75876990 | None:intergenic |
| TTGACCTCCACGTCAGCAAT+AGG | 0.436432 | 3_1:-75879291 | None:intergenic |
| TCTTTGTTTCTTGGCTTCAA+GGG | 0.458101 | 3_1:-75879013 | None:intergenic |
| ATCTGTTCCTCAAGCAAAGA+TGG | 0.472890 | 3_1:-75877245 | None:intergenic |
| TTTCTTGGACTTAGTGGTGA+AGG | 0.477916 | 3_1:-75879084 | None:intergenic |
| ATAACAAAGATAGAGATGTT+TGG | 0.480620 | 3_1:-75879997 | None:intergenic |
| CTGCTGCTTCTGTCATCTAA+CGG | 0.487150 | 3_1:+75876900 | Msa0375910:five_prime_UTR |
| CAGTGCTGATGGACAACAAA+GGG | 0.493882 | 3_1:+75877271 | Msa0375910:CDS |
| AAAGATAGAGATGTTTGGTA+AGG | 0.501081 | 3_1:-75879992 | None:intergenic |
| GATGTTTGGTAAGGAGAGTG+TGG | 0.503979 | 3_1:-75879983 | None:intergenic |
| GAGGAAGTAGAGGAACTAGT+AGG | 0.506790 | 3_1:-75879225 | None:intergenic |
| ATAATCTTCAAAGCTTGTCC+TGG | 0.509002 | 3_1:-75879360 | None:intergenic |
| GGTCACTTCGACATCGAGAT+TGG | 0.509922 | 3_1:+75877139 | Msa0375910:CDS |
| AGTGGTGAAGGTCTTGGACT+TGG | 0.521437 | 3_1:-75879072 | None:intergenic |
| CAAGTTCTTCAGCACTCAGT+TGG | 0.524170 | 3_1:-75879905 | None:intergenic |
| TTGTAAGGACTAGTTGGTTG+TGG | 0.524571 | 3_1:-75879153 | None:intergenic |
| TACTACTCCAAAAGAGAATG+AGG | 0.530957 | 3_1:+75877118 | Msa0375910:CDS |
| GTAGAGGAACTAGTAGGTGA+TGG | 0.534375 | 3_1:-75879219 | None:intergenic |
| GTTGAACTCCTTCACTATCA+AGG | 0.535634 | 3_1:+75879452 | Msa0375910:CDS |
| GAACAGATTAACAGTGCTGA+TGG | 0.553866 | 3_1:+75877260 | Msa0375910:CDS |
| GCTTACACCATCTTTGCTTG+AGG | 0.567717 | 3_1:+75877238 | Msa0375910:CDS |
| CTCAGAATCTTGCAGCGAAG+AGG | 0.567938 | 3_1:-75877177 | None:intergenic |
| TTTAGTCTTGGACTTAGAGG+TGG | 0.583231 | 3_1:-75879108 | None:intergenic |
| ATCATTGACTGAGGAAGTAG+AGG | 0.588412 | 3_1:-75879235 | None:intergenic |
| CTAGTAGGTGATGGATCAAG+AGG | 0.598655 | 3_1:-75879210 | None:intergenic |
| GTCTCCTATTGCTGACGTGG+AGG | 0.609724 | 3_1:+75879287 | Msa0375910:CDS |
| TTACTGTGGAGCGCAACAGA+AGG | 0.616988 | 3_1:+75877303 | Msa0375910:CDS |
| GCTTCAACTTGATTGATGAG+AGG | 0.624063 | 3_1:-75877095 | None:intergenic |
| AAAGTCTCCTATTGCTGACG+TGG | 0.628049 | 3_1:+75879284 | Msa0375910:CDS |
| AAGTACTATTAATGTTAACA+TGG | 0.635453 | 3_1:-75879416 | None:intergenic |
| TAAACGTACCTTGATAGTGA+AGG | 0.635932 | 3_1:-75879460 | None:intergenic |
| ATTGATGTTATCATTGACTG+AGG | 0.636012 | 3_1:-75879244 | None:intergenic |
| GATCAAGCATCAATAATTGG+AGG | 0.643294 | 3_1:+75878949 | Msa0375910:CDS |
| GATAGTGAAGGAGTTCAACA+TGG | 0.664739 | 3_1:-75879448 | None:intergenic |
| AAGGGTTTCTCATATTACTG+TGG | 0.670712 | 3_1:+75877289 | Msa0375910:CDS |
| ACAGTGCTGATGGACAACAA+AGG | 0.726440 | 3_1:+75877270 | Msa0375910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAAATAGCATT+TGG | + | chr3_1:75877529-75877548 | Msa0375910:intron | 10.0% |
| !!! | TAAGAAAAGTATATAAATAA+AGG | + | chr3_1:75878358-75878377 | Msa0375910:intron | 10.0% |
| !!! | AAGAAAAGTATATAAATAAA+GGG | + | chr3_1:75878359-75878378 | Msa0375910:intron | 10.0% |
| !! | ATTCTTATATAATATATTAC+TGG | - | chr3_1:75879829-75879848 | None:intergenic | 10.0% |
| !! | AGTAATATATTATATAAGAA+TGG | + | chr3_1:75879828-75879847 | Msa0375910:intron | 10.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr3_1:75878056-75878075 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr3_1:75878055-75878074 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr3_1:75877964-75877983 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr3_1:75877864-75877883 | Msa0375910:intron | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr3_1:75877899-75877918 | Msa0375910:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr3_1:75878055-75878074 | Msa0375910:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr3_1:75878056-75878075 | Msa0375910:intron | 15.0% |
| !! | AATCTTAGAAAAAAAATGAT+GGG | - | chr3_1:75878130-75878149 | None:intergenic | 15.0% |
| !! | TAATCTTAGAAAAAAAATGA+TGG | - | chr3_1:75878131-75878150 | None:intergenic | 15.0% |
| !!! | AGAAAAGTATATAAATAAAG+GGG | + | chr3_1:75878360-75878379 | Msa0375910:intron | 15.0% |
| !!! | GACACTTTTTTTTAAAAAAT+GGG | + | chr3_1:75878452-75878471 | Msa0375910:intron | 15.0% |
| !! | TAATGCAACTAATTTAATTA+GGG | + | chr3_1:75878925-75878944 | Msa0375910:intron | 15.0% |
| !! | TATATATGTCAAAAAGTAAA+TGG | + | chr3_1:75879629-75879648 | Msa0375910:intron | 15.0% |
| !! | AAAAGATTGAAAATGGAAAA+AGG | - | chr3_1:75876970-75876989 | None:intergenic | 20.0% |
| !!! | TAAGTGTATATTTGTTTCTA+TGG | + | chr3_1:75877390-75877409 | Msa0375910:intron | 20.0% |
| !!! | AAACACGTTAAAATCATTTT+TGG | + | chr3_1:75877567-75877586 | Msa0375910:intron | 20.0% |
| !!! | AACACGTTAAAATCATTTTT+GGG | + | chr3_1:75877568-75877587 | Msa0375910:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr3_1:75878383-75878402 | Msa0375910:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr3_1:75878415-75878434 | Msa0375910:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr3_1:75878416-75878435 | Msa0375910:intron | 20.0% |
| !!! | GGACACTTTTTTTTAAAAAA+TGG | + | chr3_1:75878451-75878470 | Msa0375910:intron | 20.0% |
| !! | TTAAATTAGTTGCATTAGAT+GGG | - | chr3_1:75878922-75878941 | None:intergenic | 20.0% |
| !! | ATTAAATTAGTTGCATTAGA+TGG | - | chr3_1:75878923-75878942 | None:intergenic | 20.0% |
| !! | CTAATGCAACTAATTTAATT+AGG | + | chr3_1:75878924-75878943 | Msa0375910:intron | 20.0% |
| !! | AAGTACTATTAATGTTAACA+TGG | - | chr3_1:75879419-75879438 | None:intergenic | 20.0% |
| !!! | ATGGTTTGTAATTAATACTA+TGG | + | chr3_1:75879847-75879866 | Msa0375910:intron | 20.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr3_1:75877704-75877723 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr3_1:75877705-75877724 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr3_1:75878027-75878046 | Msa0375910:intron | 25.0% |
| ! | ATTTAAGCACAATGAAAACA+TGG | - | chr3_1:75878190-75878209 | None:intergenic | 25.0% |
| ! | TTAACAAGTCAATTACTTAC+TGG | + | chr3_1:75878209-75878228 | Msa0375910:intron | 25.0% |
| ! | TAACAAGTCAATTACTTACT+GGG | + | chr3_1:75878210-75878229 | Msa0375910:intron | 25.0% |
| ! | TATATAAATAAAGGGGAAAG+TGG | + | chr3_1:75878367-75878386 | Msa0375910:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr3_1:75878382-75878401 | Msa0375910:intron | 25.0% |
| !!! | ATTTGATTACTTTTTGTGCA+CGG | + | chr3_1:75878710-75878729 | Msa0375910:intron | 25.0% |
| ! | TAAATTAGTTGCATTAGATG+GGG | - | chr3_1:75878921-75878940 | None:intergenic | 25.0% |
| !!! | GTATACTTTTCTTTGTTTCT+TGG | - | chr3_1:75879025-75879044 | None:intergenic | 25.0% |
| ! | CTATTGAAGAGTAAAAAGAA+AGG | - | chr3_1:75879520-75879539 | None:intergenic | 25.0% |
| !! | CTTTCTTTTTACTCTTCAAT+AGG | + | chr3_1:75879518-75879537 | Msa0375910:intron | 25.0% |
| !!! | CATTGTTACTTTTATTGTGA+TGG | - | chr3_1:75879556-75879575 | None:intergenic | 25.0% |
| !! | TTGATGTACTTTAAAAGTAG+TGG | + | chr3_1:75879653-75879672 | Msa0375910:intron | 25.0% |
| ! | ATAACAAAGATAGAGATGTT+TGG | - | chr3_1:75880000-75880019 | None:intergenic | 25.0% |
| GACAAAAAAGGAGGAAATAT+AGG | - | chr3_1:75876943-75876962 | None:intergenic | 30.0% | |
| AGATTGAAAATGGAAAAAGG+TGG | - | chr3_1:75876967-75876986 | None:intergenic | 30.0% | |
| CCATTGGAAAAGATTGAAAA+TGG | - | chr3_1:75876977-75876996 | None:intergenic | 30.0% | |
| ! | CCATTTTCAATCTTTTCCAA+TGG | + | chr3_1:75876974-75876993 | Msa0375910:exon | 30.0% |
| TCATATAAGCTTTCTTCCAT+TGG | - | chr3_1:75876993-75877012 | None:intergenic | 30.0% | |
| TTTGAAGACAGAACAGAATT+TGG | + | chr3_1:75877017-75877036 | Msa0375910:CDS | 30.0% | |
| AACTTGAAACTGAACCTAAA+AGG | + | chr3_1:75877204-75877223 | Msa0375910:CDS | 30.0% | |
| ! | ATGTTAAAGATCACGTTTTG+AGG | + | chr3_1:75877474-75877493 | Msa0375910:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3_1:75878087-75878106 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3_1:75878086-75878105 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | + | chr3_1:75877767-75877786 | Msa0375910:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr3_1:75878026-75878045 | Msa0375910:intron | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3_1:75878086-75878105 | Msa0375910:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3_1:75878087-75878106 | Msa0375910:intron | 30.0% |
| AACAAGTCAATTACTTACTG+GGG | + | chr3_1:75878211-75878230 | Msa0375910:intron | 30.0% | |
| TGAGTGATTATGAAGGTTTA+TGG | + | chr3_1:75878238-75878257 | Msa0375910:intron | 30.0% | |
| TAAACTTGCACATCTAAGTA+TGG | - | chr3_1:75878283-75878302 | None:intergenic | 30.0% | |
| TACTTAGATGTGCAAGTTTA+AGG | + | chr3_1:75878283-75878302 | Msa0375910:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr3_1:75878429-75878448 | Msa0375910:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr3_1:75878430-75878449 | Msa0375910:intron | 30.0% |
| AAAAAATGGGTCAGTTATTC+CGG | + | chr3_1:75878465-75878484 | Msa0375910:intron | 30.0% | |
| ACAGCAACAAATTATAATGG+AGG | - | chr3_1:75878518-75878537 | None:intergenic | 30.0% | |
| !! | TCCATTATAATTTGTTGCTG+TGG | + | chr3_1:75878517-75878536 | Msa0375910:intron | 30.0% |
| !! | CCATTATAATTTGTTGCTGT+GGG | + | chr3_1:75878518-75878537 | Msa0375910:intron | 30.0% |
| !! | CATTATAATTTGTTGCTGTG+GGG | + | chr3_1:75878519-75878538 | Msa0375910:intron | 30.0% |
| !!! | ATGTAGTTTTGTTGCATTCT+TGG | - | chr3_1:75879180-75879199 | None:intergenic | 30.0% |
| ! | ATTGATGTTATCATTGACTG+AGG | - | chr3_1:75879247-75879266 | None:intergenic | 30.0% |
| ! | ACAGTTTTCAAAAGAACATG+AGG | - | chr3_1:75879327-75879346 | None:intergenic | 30.0% |
| TATCAAGGTACGTTTATTCT+TGG | + | chr3_1:75879467-75879486 | Msa0375910:intron | 30.0% | |
| GCTACTTATGTGTTCAATTT+AGG | + | chr3_1:75879802-75879821 | Msa0375910:intron | 30.0% | |
| !!! | ATTTTTAGCAGAATGTTTGC+TGG | - | chr3_1:75879941-75879960 | None:intergenic | 30.0% |
| AGCAAACATTCTGCTAAAAA+TGG | + | chr3_1:75879940-75879959 | Msa0375910:exon | 30.0% | |
| GCAAACATTCTGCTAAAAAT+GGG | + | chr3_1:75879941-75879960 | Msa0375910:exon | 30.0% | |
| AAAGATAGAGATGTTTGGTA+AGG | - | chr3_1:75879995-75880014 | None:intergenic | 30.0% | |
| GAAAAAGGTGGAGACAAAAA+AGG | - | chr3_1:75876955-75876974 | None:intergenic | 35.0% | |
| !! | TGATGATCTCTTTGCCATTT+TGG | + | chr3_1:75877046-75877065 | Msa0375910:CDS | 35.0% |
| ATCTTCTAGACTCTCCAAAA+TGG | - | chr3_1:75877063-75877082 | None:intergenic | 35.0% | |
| TACTACTCCAAAAGAGAATG+AGG | + | chr3_1:75877118-75877137 | Msa0375910:CDS | 35.0% | |
| AAGGGTTTCTCATATTACTG+TGG | + | chr3_1:75877289-75877308 | Msa0375910:CDS | 35.0% | |
| ! | ATGAGCACTTGTCTGTTTTA+AGG | + | chr3_1:75877336-75877355 | Msa0375910:CDS | 35.0% |
| !! | TGCCTTGCTTTTATGTCAAA+AGG | + | chr3_1:75877366-75877385 | Msa0375910:CDS | 35.0% |
| !! | GCCTTGCTTTTATGTCAAAA+GGG | + | chr3_1:75877367-75877386 | Msa0375910:CDS | 35.0% |
| ! | ACCCTTTTGACATAAAAGCA+AGG | - | chr3_1:75877371-75877390 | None:intergenic | 35.0% |
| AAGTAGGGACTAAACTTACA+AGG | - | chr3_1:75878071-75878090 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr3_1:75878071-75878090 | Msa0375910:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | - | chr3_1:75878323-75878342 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr3_1:75878324-75878343 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr3_1:75878337-75878356 | None:intergenic | 35.0% | |
| AAAAATGGGTCAGTTATTCC+GGG | + | chr3_1:75878466-75878485 | Msa0375910:intron | 35.0% | |
| CCCACAGCAACAAATTATAA+TGG | - | chr3_1:75878521-75878540 | None:intergenic | 35.0% | |
| !! | GCATTGATTGCATAACTACA+AGG | - | chr3_1:75878762-75878781 | None:intergenic | 35.0% |
| GTAGTTATGCAATCAATGCA+TGG | + | chr3_1:75878763-75878782 | Msa0375910:intron | 35.0% | |
| GGAGATCAAGCATCAATAAT+TGG | + | chr3_1:75878946-75878965 | Msa0375910:CDS | 35.0% | |
| GATCAAGCATCAATAATTGG+AGG | + | chr3_1:75878949-75878968 | Msa0375910:CDS | 35.0% | |
| ! | TCTTTGTTTCTTGGCTTCAA+GGG | - | chr3_1:75879016-75879035 | None:intergenic | 35.0% |
| ! | TTCTTTGTTTCTTGGCTTCA+AGG | - | chr3_1:75879017-75879036 | None:intergenic | 35.0% |
| !! | AAGTTTAGTCTTGGACTTAG+AGG | - | chr3_1:75879114-75879133 | None:intergenic | 35.0% |
| CTAATTGGCAAGTTTAGTCT+TGG | - | chr3_1:75879123-75879142 | None:intergenic | 35.0% | |
| ATAATCTTCAAAGCTTGTCC+TGG | - | chr3_1:75879363-75879382 | None:intergenic | 35.0% | |
| !! | TAAACGTACCTTGATAGTGA+AGG | - | chr3_1:75879463-75879482 | None:intergenic | 35.0% |
| TCACAGTAAAAAACTGCACT+AGG | - | chr3_1:75879602-75879621 | None:intergenic | 35.0% | |
| ! | ATACGTCTTTTCAGCAAATG+AGG | - | chr3_1:75879756-75879775 | None:intergenic | 35.0% |
| ACATTTCTGCATTCTGTCTC+TGG | + | chr3_1:75876876-75876895 | Msa0375910:five_prime_UTR | 40.0% | |
| AAAGGTGGAGACAAAAAAGG+AGG | - | chr3_1:75876952-75876971 | None:intergenic | 40.0% | |
| GCTTCAACTTGATTGATGAG+AGG | - | chr3_1:75877098-75877117 | None:intergenic | 40.0% | |
| ! | GAAGTGACCTCATTCTCTTT+TGG | - | chr3_1:75877128-75877147 | None:intergenic | 40.0% |
| ! | AGCTTCTGTCTCTTCCTTTT+AGG | - | chr3_1:75877221-75877240 | None:intergenic | 40.0% |
| ATCTGTTCCTCAAGCAAAGA+TGG | - | chr3_1:75877248-75877267 | None:intergenic | 40.0% | |
| ! | GAACAGATTAACAGTGCTGA+TGG | + | chr3_1:75877260-75877279 | Msa0375910:CDS | 40.0% |
| GGGTCAATGAGTGATTATGA+AGG | + | chr3_1:75878231-75878250 | Msa0375910:intron | 40.0% | |
| TGCACATCTAAGTATGGTAG+AGG | - | chr3_1:75878277-75878296 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | chr3_1:75878321-75878340 | Msa0375910:intron | 40.0% | |
| AAAAAGAGTTGCGTGAATGC+AGG | - | chr3_1:75878545-75878564 | None:intergenic | 40.0% | |
| TTCCCCGAGAATAGAAAATC+CGG | - | chr3_1:75878738-75878757 | None:intergenic | 40.0% | |
| TGCAATCAATGCATGGAAGA+TGG | + | chr3_1:75878770-75878789 | Msa0375910:intron | 40.0% | |
| CTTGGACTTGGAACTAATCT+TGG | - | chr3_1:75879063-75879082 | None:intergenic | 40.0% | |
| TTTCTTGGACTTAGTGGTGA+AGG | - | chr3_1:75879087-75879106 | None:intergenic | 40.0% | |
| !! | TTTAGTCTTGGACTTAGAGG+TGG | - | chr3_1:75879111-75879130 | None:intergenic | 40.0% |
| TGTGGAGTTCTTGGACTAAT+TGG | - | chr3_1:75879138-75879157 | None:intergenic | 40.0% | |
| !! | TTGTAAGGACTAGTTGGTTG+TGG | - | chr3_1:75879156-75879175 | None:intergenic | 40.0% |
| !! | TGTTGCATTCTTGGCTTGTA+AGG | - | chr3_1:75879171-75879190 | None:intergenic | 40.0% |
| ! | ATCATTGACTGAGGAAGTAG+AGG | - | chr3_1:75879238-75879257 | None:intergenic | 40.0% |
| ! | ACTGTTTCTCAACGAATTCC+AGG | + | chr3_1:75879342-75879361 | Msa0375910:CDS | 40.0% |
| GATAGTGAAGGAGTTCAACA+TGG | - | chr3_1:75879451-75879470 | None:intergenic | 40.0% | |
| GTTGAACTCCTTCACTATCA+AGG | + | chr3_1:75879452-75879471 | Msa0375910:CDS | 40.0% | |
| TATATTTCACTGCACCTCTC+TGG | + | chr3_1:75879681-75879700 | Msa0375910:intron | 40.0% | |
| GATGCATGTTACATGTACCT+TGG | - | chr3_1:75879711-75879730 | None:intergenic | 40.0% | |
| ! | CTGCTGCTTCTGTCATCTAA+CGG | + | chr3_1:75876900-75876919 | Msa0375910:five_prime_UTR | 45.0% |
| GCTTACACCATCTTTGCTTG+AGG | + | chr3_1:75877238-75877257 | Msa0375910:CDS | 45.0% | |
| !! | ACAGTGCTGATGGACAACAA+AGG | + | chr3_1:75877270-75877289 | Msa0375910:CDS | 45.0% |
| !! | CAGTGCTGATGGACAACAAA+GGG | + | chr3_1:75877271-75877290 | Msa0375910:CDS | 45.0% |
| ATGGTAGAGGTCACTTGTCT+AGG | - | chr3_1:75878264-75878283 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr3_1:75878319-75878338 | None:intergenic | 45.0% | |
| !! | CGGAGGGAGTATCAAAGATA+TGG | + | chr3_1:75878490-75878509 | Msa0375910:intron | 45.0% |
| !!! | TTACTTTTTGTGCACGGACC+CGG | + | chr3_1:75878716-75878735 | Msa0375910:intron | 45.0% |
| ! | GGACCCGGATTTTCTATTCT+CGG | + | chr3_1:75878731-75878750 | Msa0375910:intron | 45.0% |
| ! | GACCCGGATTTTCTATTCTC+GGG | + | chr3_1:75878732-75878751 | Msa0375910:intron | 45.0% |
| ! | ACCCGGATTTTCTATTCTCG+GGG | + | chr3_1:75878733-75878752 | Msa0375910:intron | 45.0% |
| TCCCCGAGAATAGAAAATCC+GGG | - | chr3_1:75878737-75878756 | None:intergenic | 45.0% | |
| GATGGGGTGCATAAAGGAAA+TGG | - | chr3_1:75878905-75878924 | None:intergenic | 45.0% | |
| GCATTAGATGGGGTGCATAA+AGG | - | chr3_1:75878911-75878930 | None:intergenic | 45.0% | |
| ! | GGTGGTTTTCTTGGACTTAG+TGG | - | chr3_1:75879093-75879112 | None:intergenic | 45.0% |
| ! | GGACTTAGAGGTGGTTTTCT+TGG | - | chr3_1:75879102-75879121 | None:intergenic | 45.0% |
| CTAGTTGGTTGTGGAGTTCT+TGG | - | chr3_1:75879147-75879166 | None:intergenic | 45.0% | |
| !! | CTTGGCTTGTAAGGACTAGT+TGG | - | chr3_1:75879162-75879181 | None:intergenic | 45.0% |
| !! | CTAGTAGGTGATGGATCAAG+AGG | - | chr3_1:75879213-75879232 | None:intergenic | 45.0% |
| GTAGAGGAACTAGTAGGTGA+TGG | - | chr3_1:75879222-75879241 | None:intergenic | 45.0% | |
| GAGGAAGTAGAGGAACTAGT+AGG | - | chr3_1:75879228-75879247 | None:intergenic | 45.0% | |
| AAAGTCTCCTATTGCTGACG+TGG | + | chr3_1:75879284-75879303 | Msa0375910:CDS | 45.0% | |
| CAAGTTCTTCAGCACTCAGT+TGG | - | chr3_1:75879908-75879927 | None:intergenic | 45.0% | |
| GATGTTTGGTAAGGAGAGTG+TGG | - | chr3_1:75879986-75880005 | None:intergenic | 45.0% | |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr3_1:75877671-75877690 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr3_1:75877672-75877691 | None:intergenic | 5.0% |
| !! | ATTAATTTATTTATATAGAT+TGG | + | chr3_1:75879873-75879892 | Msa0375910:intron | 5.0% |
| GGTCACTTCGACATCGAGAT+TGG | + | chr3_1:75877139-75877158 | Msa0375910:CDS | 50.0% | |
| CTCAGAATCTTGCAGCGAAG+AGG | - | chr3_1:75877180-75877199 | None:intergenic | 50.0% | |
| TTACTGTGGAGCGCAACAGA+AGG | + | chr3_1:75877303-75877322 | Msa0375910:CDS | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | - | chr3_1:75878315-75878334 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr3_1:75878470-75878489 | Msa0375910:intron | 50.0% | |
| GTTTCTTGGCTTCAAGGGCT+TGG | - | chr3_1:75879011-75879030 | None:intergenic | 50.0% | |
| AGTGGTGAAGGTCTTGGACT+TGG | - | chr3_1:75879075-75879094 | None:intergenic | 50.0% | |
| GGACTTAGTGGTGAAGGTCT+TGG | - | chr3_1:75879081-75879100 | None:intergenic | 50.0% | |
| TTGACCTCCACGTCAGCAAT+AGG | - | chr3_1:75879294-75879313 | None:intergenic | 50.0% | |
| ! | GACGTGGAGGTCAAGTTTTC+AGG | + | chr3_1:75879300-75879319 | Msa0375910:CDS | 50.0% |
| AAGGTATACTCCCTCCGTCC+CGG | + | chr3_1:75878302-75878321 | Msa0375910:intron | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr3_1:75878316-75878335 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr3_1:75878474-75878493 | Msa0375910:intron | 55.0% | |
| CTTTGATACTCCCTCCGTCC+CGG | - | chr3_1:75878487-75878506 | None:intergenic | 55.0% | |
| GTCTCCTATTGCTGACGTGG+AGG | + | chr3_1:75879287-75879306 | Msa0375910:CDS | 55.0% | |
| TGTACCTTGGCACACCAGAG+AGG | - | chr3_1:75879698-75879717 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr3_1:75878473-75878492 | Msa0375910:intron | 60.0% | |
| TGCACCTCTCTGGTGTGCCA+AGG | + | chr3_1:75879691-75879710 | Msa0375910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 75876850 | 75880092 | 75876850 | ID=Msa0375910;Name=Msa0375910 |
| chr3_1 | mRNA | 75876850 | 75880092 | 75876850 | ID=Msa0375910-mRNA-1;Parent=Msa0375910;Name=Msa0375910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=143|1|1|1|1|1|3|136|329 |
| chr3_1 | exon | 75876850 | 75877388 | 75876850 | ID=Msa0375910-mRNA-1:exon:17824;Parent=Msa0375910-mRNA-1 |
| chr3_1 | exon | 75878946 | 75879473 | 75878946 | ID=Msa0375910-mRNA-1:exon:17825;Parent=Msa0375910-mRNA-1 |
| chr3_1 | exon | 75879891 | 75880092 | 75879891 | ID=Msa0375910-mRNA-1:exon:17826;Parent=Msa0375910-mRNA-1 |
| chr3_1 | five_prime_UTR | 75876850 | 75876992 | 75876850 | ID=Msa0375910-mRNA-1:five_prime_utr;Parent=Msa0375910-mRNA-1 |
| chr3_1 | CDS | 75876993 | 75877388 | 75876993 | ID=Msa0375910-mRNA-1:cds;Parent=Msa0375910-mRNA-1 |
| chr3_1 | CDS | 75878946 | 75879473 | 75878946 | ID=Msa0375910-mRNA-1:cds;Parent=Msa0375910-mRNA-1 |
| chr3_1 | CDS | 75879891 | 75879956 | 75879891 | ID=Msa0375910-mRNA-1:cds;Parent=Msa0375910-mRNA-1 |
| chr3_1 | three_prime_UTR | 75879957 | 75880092 | 75879957 | ID=Msa0375910-mRNA-1:three_prime_utr;Parent=Msa0375910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
