AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091400 MtrunA17_Chr7g0215351 94.152 171 10 0 11 181 11 181 9.71e-124 346
Msa1091400 MtrunA17_Chr7g0215381 93.567 171 11 0 11 181 11 181 1.78e-123 345
Msa1091400 MtrunA17_Chr7g0215421 94.152 171 10 0 11 181 11 181 1.80e-123 345
Msa1091400 MtrunA17_Chr7g0215361 94.118 170 10 0 12 181 12 181 3.91e-123 344
Msa1091400 MtrunA17_Chr7g0215431 93.529 170 11 0 12 181 12 181 7.74e-122 341
Msa1091400 MtrunA17_Chr6g0457471 83.799 179 28 1 4 181 2 180 5.66e-114 321
Msa1091400 MtrunA17_Chr6g0457461 83.240 179 26 2 4 181 2 177 3.80e-111 314
Msa1091400 MtrunA17_Chr4g0072241 48.810 168 81 4 17 180 3 169 3.09e-58 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091400 AT1G67090.1 70.330 182 49 2 1 181 1 178 6.46e-93 268
Msa1091400 AT5G38430.1 69.780 182 50 2 1 181 1 178 6.25e-92 266
Msa1091400 AT5G38430.2 69.780 182 50 2 1 181 1 178 6.25e-92 266
Msa1091400 AT5G38410.1 69.231 182 51 2 1 181 1 178 1.29e-91 265
Msa1091400 AT5G38420.1 69.231 182 51 2 1 181 1 178 3.86e-91 264
Msa1091400 AT5G38410.3 67.380 187 51 3 1 181 1 183 2.49e-89 259
Msa1091400 AT5G38410.2 66.484 182 49 3 1 181 1 171 1.06e-84 247
Msa1091400 AT1G67090.2 64.348 115 36 2 1 114 1 111 4.12e-45 145

Find 62 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTAATATTGTGGTAAT+TGG 0.181671 7_3:+6742190 None:intergenic
AAGAAGTTGATTACCTTATA+AGG 0.244592 7_3:-6741648 Msa1091400:CDS
AAATCTAACAAGTTGGTATT+AGG 0.269347 7_3:-6742219 Msa1091400:five_prime_UTR
CAACCCATCCCTTCCTTATA+AGG 0.273690 7_3:+6741635 None:intergenic
CTAAAACTTGCTATATATAA+TGG 0.294582 7_3:+6742140 None:intergenic
GGTAAAGATGAGAATGAATT+AGG 0.306324 7_3:+6740959 None:intergenic
TCTTTGTTGATCTTTGTAAC+TGG 0.311725 7_3:+6741950 None:intergenic
CAATATTAAGACCATAATAT+TGG 0.334349 7_3:-6742180 Msa1091400:five_prime_UTR
GAAGGGATGGGTTGCTTGCT+TGG 0.368783 7_3:-6741626 Msa1091400:CDS
GATACTATGATGGACGTTAC+TGG 0.371866 7_3:-6741425 Msa1091400:CDS
ACCATTGACCAGAGAACAAT+TGG 0.397843 7_3:-6741674 Msa1091400:CDS
GATTTCAAAATGCAAATGTA+TGG 0.398278 7_3:-6741127 Msa1091400:three_prime_UTR
TGATGCTTCTCAAGTGTTGA+AGG 0.410018 7_3:-6741370 Msa1091400:CDS
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 7_3:-6741399 Msa1091400:CDS
GCCAATTGTTCTCTGGTCAA+TGG 0.416317 7_3:+6741673 None:intergenic
TCTTCCACCATTGCTTGTAA+TGG 0.422658 7_3:+6741919 None:intergenic
TACAGTTAACCGTGCCTCTT+CGG 0.432912 7_3:-6742026 Msa1091400:CDS
TCAAACTTCTTCTTGCCAAT+AGG 0.435806 7_3:+6741715 None:intergenic
ATAAGAGTTAATAAATGAAA+TGG 0.440450 7_3:-6741104 Msa1091400:three_prime_UTR
ATGATACGGACAAAGGCATC+AGG 0.443523 7_3:+6741321 None:intergenic
TTCAAGTTCAAGCCATTACA+AGG 0.460492 7_3:+6741041 None:intergenic
GGCGTGGCGGCTCCATTCGT+TGG 0.467362 7_3:-6741995 Msa1091400:CDS
TAATCACTCTCTGCTGCCAT+TGG 0.470602 7_3:-6741219 Msa1091400:three_prime_UTR
GATGCCTTTGTCCGTATCAT+CGG 0.484184 7_3:-6741318 Msa1091400:CDS
CTTTGTTGATCTTTGTAACT+GGG 0.495423 7_3:+6741951 None:intergenic
CTCAAAATTTAGTAGACTGC+AGG 0.495678 7_3:+6741246 None:intergenic
ATTACCTTATAAGGAAGGGA+TGG 0.507588 7_3:-6741639 Msa1091400:CDS
AACTTCTTCTTGCCAATAGG+AGG 0.515017 7_3:+6741718 None:intergenic
AGTTGATTACCTTATAAGGA+AGG 0.522099 7_3:-6741644 Msa1091400:CDS
ATATTATGGTCTTAATATTG+TGG 0.527737 7_3:+6742183 None:intergenic
CGTGCCTCTTCGGTACAATC+CGG 0.536842 7_3:-6742016 Msa1091400:CDS
ATTACTTCCATTACAAGCAA+TGG 0.539617 7_3:-6741926 Msa1091400:CDS
CATAGTATCCTGGTGACTTG+TGG 0.542155 7_3:+6741439 None:intergenic
CGTGAGAACCACAAGTCACC+AGG 0.544938 7_3:-6741447 Msa1091400:CDS
GTTGGACTAAAGTCCATGGC+TGG 0.555609 7_3:-6741977 Msa1091400:CDS
TTACCTTATAAGGAAGGGAT+GGG 0.559428 7_3:-6741638 Msa1091400:CDS
AGCTGAAGAGGACATGATAG+AGG 0.561007 7_3:+6742054 None:intergenic
CTTGAAACTTTAAATAACAA+AGG 0.567264 7_3:-6741024 Msa1091400:three_prime_UTR
GTTGATTACCTTATAAGGAA+GGG 0.567383 7_3:-6741643 Msa1091400:CDS
TAACGTCCATCATAGTATCC+TGG 0.569613 7_3:+6741429 None:intergenic
AAGTCACCAGGATACTATGA+TGG 0.574009 7_3:-6741435 Msa1091400:CDS
CGTTGTCGAATCCGATGATA+CGG 0.579522 7_3:+6741307 None:intergenic
CTGGTGACTTGTGGTTCTCA+CGG 0.595328 7_3:+6741448 None:intergenic
AACTGTAGTCACAGCTGAAG+AGG 0.597051 7_3:+6742042 None:intergenic
AACGAATGGAGCCGCCACGC+CGG 0.597128 7_3:+6741997 None:intergenic
GCATCAGTTGCTCCAAACAA+AGG 0.598394 7_3:+6741387 None:intergenic
AAAGATGAGAATGAATTAGG+TGG 0.603747 7_3:+6740962 None:intergenic
ATTCGTTGGACTAAAGTCCA+TGG 0.609669 7_3:-6741981 Msa1091400:CDS
ACTTCCATTACAAGCAATGG+TGG 0.610706 7_3:-6741923 Msa1091400:CDS
TTGCTTGGAATTTGAGACCG+AGG 0.613015 7_3:-6741611 Msa1091400:intron
TGTAACTGGGAAGCCAGCCA+TGG 0.615947 7_3:+6741964 None:intergenic
GTTCTCTGGTCAATGGTGGA+AGG 0.618328 7_3:+6741680 None:intergenic
ATGGACTTTAGTCCAACGAA+TGG 0.623442 7_3:+6741983 None:intergenic
AATTGTTCTCTGGTCAATGG+TGG 0.637841 7_3:+6741676 None:intergenic
TGGAAGAGTAAACTGCATGC+AGG 0.652563 7_3:-6741903 Msa1091400:intron
CTCTTCGGTACAATCCGGCG+TGG 0.654522 7_3:-6742011 Msa1091400:CDS
TGATACGGACAAAGGCATCA+GGG 0.656050 7_3:+6741322 None:intergenic
TTCGGTACAATCCGGCGTGG+CGG 0.659756 7_3:-6742008 Msa1091400:CDS
CGGATTGTACCGAAGAGGCA+CGG 0.664722 7_3:+6742017 None:intergenic
CACGCCGGATTGTACCGAAG+AGG 0.674877 7_3:+6742012 None:intergenic
GAATCCGATGATACGGACAA+AGG 0.687909 7_3:+6741314 None:intergenic
ATGGACGTTACTGGACAATG+TGG 0.742197 7_3:-6741416 Msa1091400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTATTTCCAATATTA+TGG + chr7_3:6741008-6741027 None:intergenic 15.0%
!! ATAAGAGTTAATAAATGAAA+TGG - chr7_3:6742070-6742089 Msa1091400:exon 15.0%
!!! TTTTTCTATTTCCAATATTA+TGG + chr7_3:6741008-6741027 None:intergenic 15.0%
!! ATAAGAGTTAATAAATGAAA+TGG - chr7_3:6742070-6742089 Msa1091400:exon 15.0%
!!! ATATTATGGTCTTAATATTG+TGG + chr7_3:6740994-6741013 None:intergenic 20.0%
!! CAATATTAAGACCATAATAT+TGG - chr7_3:6740994-6741013 Msa1091400:three_prime_UTR 20.0%
!!! CTAAAACTTGCTATATATAA+TGG + chr7_3:6741037-6741056 None:intergenic 20.0%
!! TTGTGAACTAAGAAAAAAAA+TGG - chr7_3:6741094-6741113 Msa1091400:three_prime_UTR 20.0%
!! CTTGAAACTTTAAATAACAA+AGG - chr7_3:6742150-6742169 Msa1091400:five_prime_UTR 20.0%
!!! ATATTATGGTCTTAATATTG+TGG + chr7_3:6740994-6741013 None:intergenic 20.0%
!! CAATATTAAGACCATAATAT+TGG - chr7_3:6740994-6741013 Msa1091400:three_prime_UTR 20.0%
!!! CTAAAACTTGCTATATATAA+TGG + chr7_3:6741037-6741056 None:intergenic 20.0%
!! TTGTGAACTAAGAAAAAAAA+TGG - chr7_3:6741094-6741113 Msa1091400:three_prime_UTR 20.0%
!! CTTGAAACTTTAAATAACAA+AGG - chr7_3:6742150-6742169 Msa1091400:five_prime_UTR 20.0%
!! TATATTTTCATAAGCTCTTC+AGG - chr7_3:6741335-6741354 Msa1091400:CDS 25.0%
! ATAAGCACTTATAGATTCAT+TGG - chr7_3:6741386-6741405 Msa1091400:CDS 25.0%
!! AAGAAGTTGATTACCTTATA+AGG - chr7_3:6741526-6741545 Msa1091400:intron 25.0%
! AGTAAAGTAATATTAGACCT+CGG + chr7_3:6741583-6741602 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG - chr7_3:6741679-6741698 Msa1091400:CDS 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG + chr7_3:6741974-6741993 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG - chr7_3:6742012-6742031 Msa1091400:CDS 25.0%
! GATTTCAAAATGCAAATGTA+TGG - chr7_3:6742047-6742066 Msa1091400:CDS 25.0%
!! TATATTTTCATAAGCTCTTC+AGG - chr7_3:6741335-6741354 Msa1091400:CDS 25.0%
! ATAAGCACTTATAGATTCAT+TGG - chr7_3:6741386-6741405 Msa1091400:CDS 25.0%
!! AAGAAGTTGATTACCTTATA+AGG - chr7_3:6741526-6741545 Msa1091400:intron 25.0%
! AGTAAAGTAATATTAGACCT+CGG + chr7_3:6741583-6741602 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG - chr7_3:6741679-6741698 Msa1091400:CDS 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG + chr7_3:6741974-6741993 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG - chr7_3:6742012-6742031 Msa1091400:CDS 25.0%
! GATTTCAAAATGCAAATGTA+TGG - chr7_3:6742047-6742066 Msa1091400:CDS 25.0%
GGTCTTAATATTGTGGTAAT+TGG + chr7_3:6740987-6741006 None:intergenic 30.0%
CTTTGTTGATCTTTGTAACT+GGG + chr7_3:6741226-6741245 None:intergenic 30.0%
TCTTTGTTGATCTTTGTAAC+TGG + chr7_3:6741227-6741246 None:intergenic 30.0%
ATTACTTCCATTACAAGCAA+TGG - chr7_3:6741248-6741267 Msa1091400:exon 30.0%
!!! ACAAGTTTGTTAACCCTTTT+GGG - chr7_3:6741418-6741437 Msa1091400:CDS 30.0%
AGTTGATTACCTTATAAGGA+AGG - chr7_3:6741530-6741549 Msa1091400:intron 30.0%
GTTGATTACCTTATAAGGAA+GGG - chr7_3:6741531-6741550 Msa1091400:intron 30.0%
AAGCGAAAACCAAAAAACAA+AGG + chr7_3:6742024-6742043 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG - chr7_3:6742025-6742044 Msa1091400:CDS 30.0%
!!! ATATGCTGTTTTCCTTGTAA+TGG - chr7_3:6742121-6742140 Msa1091400:five_prime_UTR 30.0%
AAAGATGAGAATGAATTAGG+TGG + chr7_3:6742215-6742234 None:intergenic 30.0%
GGTAAAGATGAGAATGAATT+AGG + chr7_3:6742218-6742237 None:intergenic 30.0%
GGTCTTAATATTGTGGTAAT+TGG + chr7_3:6740987-6741006 None:intergenic 30.0%
CTTTGTTGATCTTTGTAACT+GGG + chr7_3:6741226-6741245 None:intergenic 30.0%
TCTTTGTTGATCTTTGTAAC+TGG + chr7_3:6741227-6741246 None:intergenic 30.0%
ATTACTTCCATTACAAGCAA+TGG - chr7_3:6741248-6741267 Msa1091400:exon 30.0%
!!! ACAAGTTTGTTAACCCTTTT+GGG - chr7_3:6741418-6741437 Msa1091400:CDS 30.0%
AGTTGATTACCTTATAAGGA+AGG - chr7_3:6741530-6741549 Msa1091400:intron 30.0%
GTTGATTACCTTATAAGGAA+GGG - chr7_3:6741531-6741550 Msa1091400:intron 30.0%
AAGCGAAAACCAAAAAACAA+AGG + chr7_3:6742024-6742043 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG - chr7_3:6742025-6742044 Msa1091400:CDS 30.0%
!!! ATATGCTGTTTTCCTTGTAA+TGG - chr7_3:6742121-6742140 Msa1091400:five_prime_UTR 30.0%
AAAGATGAGAATGAATTAGG+TGG + chr7_3:6742215-6742234 None:intergenic 30.0%
GGTAAAGATGAGAATGAATT+AGG + chr7_3:6742218-6742237 None:intergenic 30.0%
!!! CACAAGTTTGTTAACCCTTT+TGG - chr7_3:6741417-6741436 Msa1091400:CDS 35.0%
! TAACCCTTTTGGGCAATTTT+AGG - chr7_3:6741428-6741447 Msa1091400:CDS 35.0%
ACACCTAAAATTGCCCAAAA+GGG + chr7_3:6741434-6741453 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG + chr7_3:6741462-6741481 None:intergenic 35.0%
! TTCTTTTGCCAATTGTTCTC+TGG + chr7_3:6741511-6741530 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG - chr7_3:6741535-6741554 Msa1091400:intron 35.0%
TTACCTTATAAGGAAGGGAT+GGG - chr7_3:6741536-6741555 Msa1091400:intron 35.0%
CTCAAAATTTAGTAGACTGC+AGG + chr7_3:6741931-6741950 None:intergenic 35.0%
! TTCAAGTTCAAGCCATTACA+AGG + chr7_3:6742136-6742155 None:intergenic 35.0%
!!! CACAAGTTTGTTAACCCTTT+TGG - chr7_3:6741417-6741436 Msa1091400:CDS 35.0%
! TAACCCTTTTGGGCAATTTT+AGG - chr7_3:6741428-6741447 Msa1091400:CDS 35.0%
ACACCTAAAATTGCCCAAAA+GGG + chr7_3:6741434-6741453 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG + chr7_3:6741462-6741481 None:intergenic 35.0%
! TTCTTTTGCCAATTGTTCTC+TGG + chr7_3:6741511-6741530 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG - chr7_3:6741535-6741554 Msa1091400:intron 35.0%
TTACCTTATAAGGAAGGGAT+GGG - chr7_3:6741536-6741555 Msa1091400:intron 35.0%
CTCAAAATTTAGTAGACTGC+AGG + chr7_3:6741931-6741950 None:intergenic 35.0%
! TTCAAGTTCAAGCCATTACA+AGG + chr7_3:6742136-6742155 None:intergenic 35.0%
ATGGACTTTAGTCCAACGAA+TGG + chr7_3:6741194-6741213 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG - chr7_3:6741193-6741212 Msa1091400:three_prime_UTR 40.0%
ACTTCCATTACAAGCAATGG+TGG - chr7_3:6741251-6741270 Msa1091400:exon 40.0%
TCTTCCACCATTGCTTGTAA+TGG + chr7_3:6741258-6741277 None:intergenic 40.0%
CACACCTAAAATTGCCCAAA+AGG + chr7_3:6741435-6741454 None:intergenic 40.0%
!! CTTTTGGGCAATTTTAGGTG+TGG - chr7_3:6741433-6741452 Msa1091400:CDS 40.0%
AACTTCTTCTTGCCAATAGG+AGG + chr7_3:6741459-6741478 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG + chr7_3:6741501-6741520 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG - chr7_3:6741500-6741519 Msa1091400:intron 40.0%
CAAATTTGTGACTGTGACCT+TGG + chr7_3:6741648-6741667 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG - chr7_3:6741694-6741713 Msa1091400:CDS 40.0%
AAGTCACCAGGATACTATGA+TGG - chr7_3:6741739-6741758 Msa1091400:intron 40.0%
TAACGTCCATCATAGTATCC+TGG + chr7_3:6741748-6741767 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG - chr7_3:6741749-6741768 Msa1091400:intron 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG - chr7_3:6741775-6741794 Msa1091400:intron 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG - chr7_3:6741804-6741823 Msa1091400:intron 40.0%
ATGGACTTTAGTCCAACGAA+TGG + chr7_3:6741194-6741213 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG - chr7_3:6741193-6741212 Msa1091400:three_prime_UTR 40.0%
ACTTCCATTACAAGCAATGG+TGG - chr7_3:6741251-6741270 Msa1091400:exon 40.0%
TCTTCCACCATTGCTTGTAA+TGG + chr7_3:6741258-6741277 None:intergenic 40.0%
CACACCTAAAATTGCCCAAA+AGG + chr7_3:6741435-6741454 None:intergenic 40.0%
!! CTTTTGGGCAATTTTAGGTG+TGG - chr7_3:6741433-6741452 Msa1091400:CDS 40.0%
AACTTCTTCTTGCCAATAGG+AGG + chr7_3:6741459-6741478 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG + chr7_3:6741501-6741520 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG - chr7_3:6741500-6741519 Msa1091400:intron 40.0%
CAAATTTGTGACTGTGACCT+TGG + chr7_3:6741648-6741667 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG - chr7_3:6741694-6741713 Msa1091400:CDS 40.0%
AAGTCACCAGGATACTATGA+TGG - chr7_3:6741739-6741758 Msa1091400:intron 40.0%
TAACGTCCATCATAGTATCC+TGG + chr7_3:6741748-6741767 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG - chr7_3:6741749-6741768 Msa1091400:intron 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG - chr7_3:6741775-6741794 Msa1091400:intron 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG - chr7_3:6741804-6741823 Msa1091400:intron 40.0%
AGCTGAAGAGGACATGATAG+AGG + chr7_3:6741123-6741142 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG + chr7_3:6741135-6741154 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG - chr7_3:6741148-6741167 Msa1091400:three_prime_UTR 45.0%
TGGAAGAGTAAACTGCATGC+AGG - chr7_3:6741271-6741290 Msa1091400:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG - chr7_3:6741444-6741463 Msa1091400:CDS 45.0%
GCCAATTGTTCTCTGGTCAA+TGG + chr7_3:6741504-6741523 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG + chr7_3:6741542-6741561 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG - chr7_3:6741563-6741582 Msa1091400:intron 45.0%
CATAGTATCCTGGTGACTTG+TGG + chr7_3:6741738-6741757 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG - chr7_3:6741758-6741777 Msa1091400:intron 45.0%
GCATCAGTTGCTCCAAACAA+AGG + chr7_3:6741790-6741809 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG + chr7_3:6741855-6741874 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG + chr7_3:6741856-6741875 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG - chr7_3:6741856-6741875 Msa1091400:intron 45.0%
GAATCCGATGATACGGACAA+AGG + chr7_3:6741863-6741882 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG + chr7_3:6741870-6741889 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG - chr7_3:6741955-6741974 Msa1091400:CDS 45.0%
AGCTGAAGAGGACATGATAG+AGG + chr7_3:6741123-6741142 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG + chr7_3:6741135-6741154 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG - chr7_3:6741148-6741167 Msa1091400:three_prime_UTR 45.0%
TGGAAGAGTAAACTGCATGC+AGG - chr7_3:6741271-6741290 Msa1091400:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG - chr7_3:6741444-6741463 Msa1091400:CDS 45.0%
GCCAATTGTTCTCTGGTCAA+TGG + chr7_3:6741504-6741523 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG + chr7_3:6741542-6741561 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG - chr7_3:6741563-6741582 Msa1091400:intron 45.0%
CATAGTATCCTGGTGACTTG+TGG + chr7_3:6741738-6741757 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG - chr7_3:6741758-6741777 Msa1091400:intron 45.0%
GCATCAGTTGCTCCAAACAA+AGG + chr7_3:6741790-6741809 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG + chr7_3:6741855-6741874 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG + chr7_3:6741856-6741875 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG - chr7_3:6741856-6741875 Msa1091400:intron 45.0%
GAATCCGATGATACGGACAA+AGG + chr7_3:6741863-6741882 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG + chr7_3:6741870-6741889 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG - chr7_3:6741955-6741974 Msa1091400:CDS 45.0%
GTTGGACTAAAGTCCATGGC+TGG - chr7_3:6741197-6741216 Msa1091400:three_prime_UTR 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG + chr7_3:6741497-6741516 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG - chr7_3:6741628-6741647 Msa1091400:CDS 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG + chr7_3:6741729-6741748 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG - chr7_3:6741197-6741216 Msa1091400:three_prime_UTR 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG + chr7_3:6741497-6741516 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG - chr7_3:6741628-6741647 Msa1091400:CDS 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG + chr7_3:6741729-6741748 None:intergenic 50.0%
CGGATTGTACCGAAGAGGCA+CGG + chr7_3:6741160-6741179 None:intergenic 55.0%
CGTGCCTCTTCGGTACAATC+CGG - chr7_3:6741158-6741177 Msa1091400:three_prime_UTR 55.0%
TGTAACTGGGAAGCCAGCCA+TGG + chr7_3:6741213-6741232 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG - chr7_3:6741548-6741567 Msa1091400:intron 55.0%
CGTGAGAACCACAAGTCACC+AGG - chr7_3:6741727-6741746 Msa1091400:CDS 55.0%
CGGATTGTACCGAAGAGGCA+CGG + chr7_3:6741160-6741179 None:intergenic 55.0%
CGTGCCTCTTCGGTACAATC+CGG - chr7_3:6741158-6741177 Msa1091400:three_prime_UTR 55.0%
TGTAACTGGGAAGCCAGCCA+TGG + chr7_3:6741213-6741232 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG - chr7_3:6741548-6741567 Msa1091400:intron 55.0%
CGTGAGAACCACAAGTCACC+AGG - chr7_3:6741727-6741746 Msa1091400:CDS 55.0%
CACGCCGGATTGTACCGAAG+AGG + chr7_3:6741165-6741184 None:intergenic 60.0%
CTCTTCGGTACAATCCGGCG+TGG - chr7_3:6741163-6741182 Msa1091400:three_prime_UTR 60.0%
TTCGGTACAATCCGGCGTGG+CGG - chr7_3:6741166-6741185 Msa1091400:three_prime_UTR 60.0%
CACGCCGGATTGTACCGAAG+AGG + chr7_3:6741165-6741184 None:intergenic 60.0%
CTCTTCGGTACAATCCGGCG+TGG - chr7_3:6741163-6741182 Msa1091400:three_prime_UTR 60.0%
TTCGGTACAATCCGGCGTGG+CGG - chr7_3:6741166-6741185 Msa1091400:three_prime_UTR 60.0%
AACGAATGGAGCCGCCACGC+CGG + chr7_3:6741180-6741199 None:intergenic 65.0%
AACGAATGGAGCCGCCACGC+CGG + chr7_3:6741180-6741199 None:intergenic 65.0%
GGCGTGGCGGCTCCATTCGT+TGG - chr7_3:6741179-6741198 Msa1091400:three_prime_UTR 70.0%
GGCGTGGCGGCTCCATTCGT+TGG - chr7_3:6741179-6741198 Msa1091400:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 6740957 6742239 6740957 ID=Msa1091400;Name=Msa1091400
chr7_3 mRNA 6740957 6742239 6740957 ID=Msa1091400-mRNA-1;Parent=Msa1091400;Name=Msa1091400-mRNA-1;_AED=0.15;_eAED=0.15;_QI=156|1|1|1|1|1|3|297|181
chr7_3 exon 6740957 6741484 6740957 ID=Msa1091400-mRNA-1:exon:2121;Parent=Msa1091400-mRNA-1
chr7_3 exon 6741612 6741746 6741612 ID=Msa1091400-mRNA-1:exon:2120;Parent=Msa1091400-mRNA-1
chr7_3 exon 6741904 6742239 6741904 ID=Msa1091400-mRNA-1:exon:2119;Parent=Msa1091400-mRNA-1
chr7_3 five_prime_UTR 6742084 6742239 6742084 ID=Msa1091400-mRNA-1:five_prime_utr;Parent=Msa1091400-mRNA-1
chr7_3 CDS 6741904 6742083 6741904 ID=Msa1091400-mRNA-1:cds;Parent=Msa1091400-mRNA-1
chr7_3 CDS 6741612 6741746 6741612 ID=Msa1091400-mRNA-1:cds;Parent=Msa1091400-mRNA-1
chr7_3 CDS 6741254 6741484 6741254 ID=Msa1091400-mRNA-1:cds;Parent=Msa1091400-mRNA-1
chr7_3 three_prime_UTR 6740957 6741253 6740957 ID=Msa1091400-mRNA-1:three_prime_utr;Parent=Msa1091400-mRNA-1
Gene Sequence

>Msa1091400

ATGGCTTCCTCTATCATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCCGGCGTGGCGGCTCCATTCGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGATCAACAAAGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGTGGCCTCCTATTGGCAAGAAGAAGTTTGAGACTCTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCAAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACTGATGCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa1091400

MASSIMSSSAVTTVNRASSVQSGVAAPFVGLKSMAGFPVTKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDASQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY*