AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127120 MtrunA17_Chr1g0185581 95.048 929 30 4 1 926 1 916 0.0 1779
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127120 AT1G03160.1 54.575 918 391 11 12 926 12 906 0.0 981
Msa0127120 AT1G03160.4 52.288 918 383 12 12 926 12 877 0.0 917
Msa0127120 AT1G03160.2 55.994 709 286 11 12 717 12 697 0.0 758
Msa0127120 AT1G03160.3 56.671 697 276 11 12 705 12 685 0.0 752

Find 229 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGGTTGGGCTTGGGCCTT+AGG 0.170981 1_3:-56327808 None:intergenic
TTCTAGGCTGGGGTTGGGCT+TGG 0.177671 1_3:-56327816 None:intergenic
GACTGAAGCAGTAGAAAATT+TGG 0.183151 1_3:+56332854 Msa0127120:CDS
GATTGACGAGCCGTTCTTAT+TGG 0.192042 1_3:+56328858 Msa0127120:CDS
TACTTGGAGATTATGAAAAT+TGG 0.199582 1_3:+56331269 Msa0127120:CDS
CTCAGGACACATGAAGATTT+TGG 0.203758 1_3:-56333004 None:intergenic
GTTACTAGTTTGGAAAGTTT+TGG 0.211804 1_3:+56328429 Msa0127120:CDS
CTCAAGCTCGTAAAAGCTAT+TGG 0.253669 1_3:-56330499 None:intergenic
TCTAGGCTGGGGTTGGGCTT+GGG 0.258533 1_3:-56327815 None:intergenic
TCCTTCTGTGTCATCTGTTC+AGG 0.271301 1_3:+56331003 Msa0127120:CDS
CATACCTCACTTCCAGTTAA+AGG 0.273809 1_3:-56329877 None:intergenic
GCTTCGAGTTTACTTGCTTC+TGG 0.273889 1_3:+56328393 Msa0127120:CDS
ATTAATGATTTCCTGGAATA+GGG 0.274023 1_3:-56333150 None:intergenic
GGAGAGGAAGGAGGGAGATA+TGG 0.277522 1_3:-56327580 None:intergenic
TTCATGTGTCCTGAGTTCTT+TGG 0.283565 1_3:+56333012 Msa0127120:exon
ACTGTGATTAATGCGCTTCT+TGG 0.287328 1_3:+56329483 Msa0127120:CDS
TCATGTGTCCTGAGTTCTTT+GGG 0.289607 1_3:+56333013 Msa0127120:exon
CCTTGTATATTCTCCCTTGT+TGG 0.292272 1_3:-56331309 None:intergenic
GATTTGTTAAACTGGAAGAT+AGG 0.296689 1_3:+56328601 Msa0127120:CDS
GGAAGCAATGTCCTTCATTA+AGG 0.301311 1_3:+56330329 Msa0127120:CDS
AAAATCAGCACCTTCAGATT+TGG 0.302212 1_3:-56328247 None:intergenic
AGGGTGAAGAAGGGAGTAGG+AGG 0.308927 1_3:-56327678 None:intergenic
CTTATGGCTACCTCTAGTTT+CGG 0.318047 1_3:+56330429 Msa0127120:CDS
AATCACAATTCCAACCGATT+TGG 0.321017 1_3:-56327962 None:intergenic
CTCCACAACACGTGATTTAG+TGG 0.321750 1_3:-56330867 None:intergenic
TTGGAAGATCTTCTTGCTCT+TGG 0.322078 1_3:+56332512 Msa0127120:CDS
TGACTTACTTCTCTAAGAAT+TGG 0.324069 1_3:-56329639 None:intergenic
TTCAGTCAAATCCCTCTTCA+TGG 0.324417 1_3:-56332838 None:intergenic
TGGAAAATGAGAGCCTTTCT+TGG 0.326351 1_3:+56330724 Msa0127120:CDS
GATTAATGATTTCCTGGAAT+AGG 0.331902 1_3:-56333151 None:intergenic
CCGCCGGGGAAGAGTGTTCT+AGG 0.335799 1_3:-56327832 None:intergenic
CTTGGTCAACTAGGAGTTGC+TGG 0.344665 1_3:+56332449 Msa0127120:CDS
TTATGGCTACCTCTAGTTTC+GGG 0.345941 1_3:+56330430 Msa0127120:CDS
TTATATGATTAATGATTTCC+TGG 0.345972 1_3:-56333157 None:intergenic
TCAGCTGATCGCCCTTTAAC+TGG 0.347584 1_3:+56329865 Msa0127120:CDS
GGAGAAACAGTTAATAGAAA+TGG 0.348551 1_3:+56328623 Msa0127120:CDS
CTTGTATATTCTCCCTTGTT+GGG 0.350679 1_3:-56331308 None:intergenic
CCTATGTTTGCCTCGTTTGT+GGG 0.352688 1_3:+56328348 Msa0127120:CDS
TGCTCTTGAAGCAAAACTTA+TGG 0.354047 1_3:+56330413 Msa0127120:CDS
GCCTATTCTGCGCCTGATCT+TGG 0.360092 1_3:-56332908 None:intergenic
GATACCTTTGTGAGAGTCAT+TGG 0.361581 1_3:+56332876 Msa0127120:CDS
TCAGTCTCTGGTTCTCAATA+TGG 0.366476 1_3:+56330474 Msa0127120:CDS
ATGGTAGGGAAGGGTGAAGA+AGG 0.369493 1_3:-56327688 None:intergenic
GAAATGGCGAGAAACATTAT+TGG 0.371244 1_3:-56327782 None:intergenic
AGGGGATCAAGCTGGCTATC+AGG 0.372164 1_3:+56331411 Msa0127120:CDS
AGGTGTGGATAGCGAGAGAA+GGG 0.383193 1_3:-56327721 None:intergenic
TGAAGGATTACATTAGTTCC+AGG 0.384158 1_3:-56329781 None:intergenic
AGAAGGGGTTGTTATGGAAC+AGG 0.385359 1_3:-56327647 None:intergenic
GTTGCTAGGAATACAATGTT+AGG 0.385672 1_3:+56328150 Msa0127120:CDS
TGTGGGTGGATTTGTTAAAC+TGG 0.386432 1_3:+56328593 Msa0127120:CDS
TCAAGCTCGTAAAAGCTATT+GGG 0.388699 1_3:-56330498 None:intergenic
TCGATGTGCCAAGCAGGATT+TGG 0.389874 1_3:+56330653 Msa0127120:CDS
ACCTATGTTTGCCTCGTTTG+TGG 0.391425 1_3:+56328347 Msa0127120:CDS
AGAGTGTTCTAGGCTGGGGT+TGG 0.391496 1_3:-56327822 None:intergenic
AAGAACCACCAATTCGCTAT+TGG 0.400572 1_3:-56328175 None:intergenic
GGAATAAGAAGGGGTTGTTA+TGG 0.401637 1_3:-56327653 None:intergenic
CGGGGAAGAGTGTTCTAGGC+TGG 0.401981 1_3:-56327828 None:intergenic
GAGTGTTCTAGGCTGGGGTT+GGG 0.404490 1_3:-56327821 None:intergenic
AGAGTAGGGACTTTGAGTTC+AGG 0.404816 1_3:-56327865 None:intergenic
GAATGGAGGGTGCGGCGAAA+AGG 0.405506 1_3:-56327745 None:intergenic
TAGCAAATATATTGACCATC+TGG 0.411722 1_3:-56329606 None:intergenic
ATGTCCTTGAACCCTATTCC+AGG 0.418990 1_3:+56333139 Msa0127120:three_prime_UTR
GAAGAATTGTTGTCAGTCTC+TGG 0.420560 1_3:+56330462 Msa0127120:CDS
GGGGTTGGGCTTGGGCCTTA+GGG 0.425443 1_3:-56327807 None:intergenic
CTTTACGTTGTCCTTAATGA+AGG 0.432690 1_3:-56330340 None:intergenic
AGTAGGAGGGAGGAATAAGA+AGG 0.433949 1_3:-56327664 None:intergenic
CGAATTGGTGGTTCTTCCAT+TGG 0.436292 1_3:+56328182 Msa0127120:CDS
GCTCTTGGAATTTGTTCTGT+TGG 0.439392 1_3:+56332527 Msa0127120:CDS
TGAGTTGGAGAATGAGAGTA+GGG 0.440641 1_3:-56327879 None:intergenic
TTCGTAAATTATTTGATGGT+GGG 0.440847 1_3:+56328472 Msa0127120:CDS
GAAAGAAGGGAGAGGAAGGA+GGG 0.441173 1_3:-56327588 None:intergenic
CTTATTTATGGTGGTGGTGG+TGG 0.442147 1_3:+56328270 Msa0127120:CDS
TGATAAAGCAGTTTCCAAAT+CGG 0.442591 1_3:+56327948 Msa0127120:CDS
CATATGAGTTGCTAAAGAAA+GGG 0.444121 1_3:+56331392 Msa0127120:CDS
GAGGTGTGGATAGCGAGAGA+AGG 0.445791 1_3:-56327722 None:intergenic
AATGGAGGGTGCGGCGAAAA+GGG 0.446849 1_3:-56327744 None:intergenic
TTCAGGGCGTTTGTAACCGC+CGG 0.450932 1_3:-56327848 None:intergenic
ACCAAGATCAGGCGCAGAAT+AGG 0.452346 1_3:+56332907 Msa0127120:CDS
GCCGTTCTTATTGGTTATAG+TGG 0.454113 1_3:+56328867 Msa0127120:CDS
CTAGATGGGTCGACGATCGC+AGG 0.455498 1_3:+56330540 Msa0127120:CDS
GGGGAAGAGTGTTCTAGGCT+GGG 0.456730 1_3:-56327827 None:intergenic
CTTCGTAAATTATTTGATGG+TGG 0.456739 1_3:+56328471 Msa0127120:CDS
GCAGAGTATAACAGAGGTTG+TGG 0.456855 1_3:+56328575 Msa0127120:CDS
TTCTGAATTCTTGAGGTGGC+AGG 0.456958 1_3:-56330968 None:intergenic
TGATGGTGGGTTTGCAAATG+AGG 0.457041 1_3:+56328485 Msa0127120:CDS
GAGTAGGGACTTTGAGTTCA+GGG 0.457331 1_3:-56327864 None:intergenic
GAGTTTGTTTCCTCCAAGAA+AGG 0.457846 1_3:-56330737 None:intergenic
GGGGAATGAAGATAGAAAGA+AGG 0.458157 1_3:-56327602 None:intergenic
ATACCTCACTTCCAGTTAAA+GGG 0.459106 1_3:-56329876 None:intergenic
GTTAGGTTCCAATAGCGAAT+TGG 0.463663 1_3:+56328167 Msa0127120:CDS
TTCTCGCCATTTCTTCCCTA+AGG 0.464182 1_3:+56327792 Msa0127120:CDS
TTGCTTCGTAAATTATTTGA+TGG 0.465054 1_3:+56328468 Msa0127120:CDS
GATAGAAAGAAGGGAGAGGA+AGG 0.467673 1_3:-56327592 None:intergenic
TATAAAGAAAGCTGCACCTC+TGG 0.469112 1_3:+56328677 Msa0127120:CDS
ACATATGAGTTGCTAAAGAA+AGG 0.469855 1_3:+56331391 Msa0127120:CDS
GGAAGGGTGAAGAAGGGAGT+AGG 0.471511 1_3:-56327681 None:intergenic
AGAAAGAAGGGAGAGGAAGG+AGG 0.471855 1_3:-56327589 None:intergenic
AATGTGATCTCATTCGTTGT+TGG 0.473194 1_3:-56329534 None:intergenic
TTTCTTATTTATGGTGGTGG+TGG 0.481098 1_3:+56328267 Msa0127120:CDS
TTGAGTTGGAGAATGAGAGT+AGG 0.481221 1_3:-56327880 None:intergenic
TTGGAATTTGTTCTGTTGGC+GGG 0.483032 1_3:+56332531 Msa0127120:CDS
AGAAACATTATTGGAAGTGA+TGG 0.485938 1_3:-56327773 None:intergenic
CGAATTTCCCATCTCGGAGG+CGG 0.487689 1_3:+56332757 Msa0127120:CDS
GGGAATGAAGATAGAAAGAA+GGG 0.487751 1_3:-56327601 None:intergenic
GGGTGAAGAAGGGAGTAGGA+GGG 0.489166 1_3:-56327677 None:intergenic
ATTTCCTGGAATAGGGTTCA+AGG 0.489984 1_3:-56333143 None:intergenic
GAGAAAGATATCTCAAAGAC+GGG 0.490849 1_3:+56329505 Msa0127120:CDS
TCATTCTGTTATTGATGCAA+TGG 0.495631 1_3:+56333041 Msa0127120:three_prime_UTR
TGGCAAACCTTACCAAGATC+AGG 0.496944 1_3:+56332896 Msa0127120:CDS
ATCACACGCCGCCTCCGAGA+TGG 0.500627 1_3:-56332765 None:intergenic
GATTGGACACAGAAAATACT+TGG 0.500788 1_3:+56331253 Msa0127120:intron
AATCTGTCTGCAATTCCAAC+AGG 0.501062 1_3:-56330594 None:intergenic
CGTAAAGAGATTGTTGAATA+CGG 0.501703 1_3:+56330356 Msa0127120:CDS
CTTGGGCCTTAGGGAAGAAA+TGG 0.502374 1_3:-56327798 None:intergenic
TTAGGGACTCTTGGTCAACT+AGG 0.502895 1_3:+56332440 Msa0127120:CDS
TTCTGCGCCTGATCTTGGTA+AGG 0.503435 1_3:-56332903 None:intergenic
TGAAGAAGGGAGTAGGAGGG+AGG 0.504989 1_3:-56327674 None:intergenic
CTTAAACTTGAAACACCTGT+TGG 0.505262 1_3:+56330579 Msa0127120:CDS
CTTGGAATTTGTTCTGTTGG+CGG 0.506769 1_3:+56332530 Msa0127120:CDS
CTATTTCGAATTTCCCATCT+CGG 0.507858 1_3:+56332751 Msa0127120:CDS
TTCTTCAAGTTCATTTGCCA+AGG 0.507927 1_3:-56332814 None:intergenic
GGTGTAAGGGATGGTAGGGA+AGG 0.508559 1_3:-56327698 None:intergenic
TCAGGGCGTTTGTAACCGCC+GGG 0.508845 1_3:-56327847 None:intergenic
AAAGCAGTTTCCAAATCGGT+TGG 0.509260 1_3:+56327952 Msa0127120:CDS
TTACTTGCTTCTGGTGCTAG+TGG 0.511768 1_3:+56328402 Msa0127120:CDS
TTCTTCGTTATTCACAGCAA+TGG 0.512194 1_3:+56330010 Msa0127120:CDS
GAATCTGATCGGAGTTGAGT+TGG 0.513592 1_3:-56327894 None:intergenic
TGGTAGGGAAGGGTGAAGAA+GGG 0.514780 1_3:-56327687 None:intergenic
TGGGAGAGGAATGGAGGGTG+CGG 0.518108 1_3:-56327753 None:intergenic
ATTTGTTAAACTGGAAGATA+GGG 0.520690 1_3:+56328602 Msa0127120:CDS
TACCATGGATTTGATTTGAA+GGG 0.526464 1_3:-56327623 None:intergenic
AAGTGATGGGAGAGGAATGG+AGG 0.527717 1_3:-56327759 None:intergenic
GTACCATGGATTTGATTTGA+AGG 0.530377 1_3:-56327624 None:intergenic
GTGTGGATAGCGAGAGAAGG+GGG 0.530632 1_3:-56327719 None:intergenic
AAAATGAGAGCCTTTCTTGG+AGG 0.531067 1_3:+56330727 Msa0127120:CDS
GTAGGAGGGAGGAATAAGAA+GGG 0.531691 1_3:-56327663 None:intergenic
TGGGTCGACGATCGCAGGGA+TGG 0.531906 1_3:+56330545 Msa0127120:CDS
AGGTTCCAATAGCGAATTGG+TGG 0.531924 1_3:+56328170 Msa0127120:CDS
TCACACGCCGCCTCCGAGAT+GGG 0.532753 1_3:-56332764 None:intergenic
TATTGCAGCCAAATCCTGCT+TGG 0.535558 1_3:-56330661 None:intergenic
CAGAGTATAACAGAGGTTGT+GGG 0.536041 1_3:+56328576 Msa0127120:CDS
TGGAAGTGATGGGAGAGGAA+TGG 0.537999 1_3:-56327762 None:intergenic
AGGAAGGAGGGAGATATGGA+TGG 0.538742 1_3:-56327576 None:intergenic
AAATTAGTCAATGAGAGTAA+TGG 0.541323 1_3:+56328549 Msa0127120:CDS
AGACTATCGATGTGCCAAGC+AGG 0.548271 1_3:+56330647 Msa0127120:CDS
AGTGATGGGAGAGGAATGGA+GGG 0.550236 1_3:-56327758 None:intergenic
AACAGTAGGAAGACCTTGAT+CGG 0.550869 1_3:-56328127 None:intergenic
CCAACAAGGGAGAATATACA+AGG 0.551313 1_3:+56331309 Msa0127120:CDS
GTCTTCCTACTGTTGTTGCT+AGG 0.559275 1_3:+56328136 Msa0127120:CDS
CTATGTTTGCCTCGTTTGTG+GGG 0.561173 1_3:+56328349 Msa0127120:CDS
TGAAATATCCCAAAGAACTC+AGG 0.564402 1_3:-56333021 None:intergenic
CTAAAGAAAGGGGATCAAGC+TGG 0.564620 1_3:+56331403 Msa0127120:CDS
ATCCACTAAATCACGTGTTG+TGG 0.567456 1_3:+56330865 Msa0127120:CDS
GAAACATTATTGGAAGTGAT+GGG 0.567733 1_3:-56327772 None:intergenic
ACTTCTCTAAGAATTGGAGC+TGG 0.567788 1_3:-56329633 None:intergenic
AGGCCATGGCAAATTAAAAG+TGG 0.567870 1_3:-56333071 None:intergenic
TAAGACGCTGTTGTCTCTGA+AGG 0.569012 1_3:-56329798 None:intergenic
GAGGCGGCGTGTGATAGATA+AGG 0.570406 1_3:+56332773 Msa0127120:CDS
TATGTCATTCTGAATTCTTG+AGG 0.570562 1_3:-56330975 None:intergenic
GGAGGGTGCGGCGAAAAGGG+AGG 0.570899 1_3:-56327741 None:intergenic
GAAAAGGAAAGCAGATACCT+TGG 0.573360 1_3:+56332797 Msa0127120:CDS
GGGAAGAGTGTTCTAGGCTG+GGG 0.574285 1_3:-56327826 None:intergenic
TCTTGCTTAAAGAGAGGCCA+TGG 0.574910 1_3:-56333085 None:intergenic
AGGAGGGAGATATGGATGGA+TGG 0.575219 1_3:-56327572 None:intergenic
GTGTGATAGATAAGGTGAAA+AGG 0.575343 1_3:+56332781 Msa0127120:CDS
TGAGCAAGAAGTTCGTGAGA+TGG 0.577980 1_3:+56331474 Msa0127120:CDS
ATCTGTACTGCAAACCACAT+TGG 0.578353 1_3:+56332493 Msa0127120:CDS
TGAAGATAGAAAGAAGGGAG+AGG 0.581729 1_3:-56327596 None:intergenic
GAGGAAACAAACTCTATCCA+TGG 0.582861 1_3:+56330746 Msa0127120:CDS
GGTGTGGATAGCGAGAGAAG+GGG 0.584107 1_3:-56327720 None:intergenic
CTCTAAGAATTGGAGCTGGA+AGG 0.584112 1_3:-56329629 None:intergenic
ATGACAATTGTTGATACACC+TGG 0.584916 1_3:+56329763 Msa0127120:CDS
GGAGAAAGATATCTCAAAGA+CGG 0.586536 1_3:+56329504 Msa0127120:CDS
TGTTATGGAACAGGGTACCA+TGG 0.587563 1_3:-56327638 None:intergenic
TGGCCTCTCTTTAAGCAAGA+AGG 0.588310 1_3:+56333088 Msa0127120:three_prime_UTR
CAGCCTAGAACACTCTTCCC+CGG 0.588937 1_3:+56327829 Msa0127120:CDS
AACTTGAAGAAGCCATGAAG+AGG 0.589676 1_3:+56332826 Msa0127120:CDS
ATCGGAGAGTAAAACGCCAC+TGG 0.590084 1_3:-56328109 None:intergenic
TGTACAAATCTAGCGACCAA+TGG 0.590931 1_3:-56328198 None:intergenic
ACCATGGATTTGATTTGAAG+GGG 0.592880 1_3:-56327622 None:intergenic
CCCACAAACGAGGCAAACAT+AGG 0.594377 1_3:-56328348 None:intergenic
CATGGCAAATTAAAAGTGGA+TGG 0.598743 1_3:-56333067 None:intergenic
GTTGAGTTTCCCGAAACTAG+AGG 0.599289 1_3:-56330439 None:intergenic
GATGGATGACTCTCCGTCAG+TGG 0.599652 1_3:-56327554 None:intergenic
ACTTGAAGAAGCCATGAAGA+GGG 0.600088 1_3:+56332827 Msa0127120:CDS
AACAGTTAATAGAAATGGAG+AGG 0.600267 1_3:+56328628 Msa0127120:CDS
ATTATTGGAAGTGATGGGAG+AGG 0.603910 1_3:-56327767 None:intergenic
GTGTAAGGGATGGTAGGGAA+GGG 0.604939 1_3:-56327697 None:intergenic
AACAACTCAGATTCCACTGA+CGG 0.605575 1_3:+56327541 None:intergenic
TAGGAGGGAGGAATAAGAAG+GGG 0.608955 1_3:-56327662 None:intergenic
GTTAATAGAAATGGAGAGGT+CGG 0.609718 1_3:+56328632 Msa0127120:CDS
TAGATGGGTCGACGATCGCA+GGG 0.610773 1_3:+56330541 Msa0127120:CDS
TCGCAGGGATGGATAGAATG+AGG 0.611057 1_3:+56330556 Msa0127120:CDS
ACCACTATAACCAATAAGAA+CGG 0.613617 1_3:-56328868 None:intergenic
GCGCCTTCTTGCTTAAAGAG+AGG 0.614736 1_3:-56333091 None:intergenic
CCATGGATTTGATTTGAAGG+GGG 0.619733 1_3:-56327621 None:intergenic
GTCATTCTGAATTCTTGAGG+TGG 0.619878 1_3:-56330972 None:intergenic
ATATGAGTTGCTAAAGAAAG+GGG 0.621951 1_3:+56331393 Msa0127120:CDS
AGAGCAGATCGAGCAGACAC+AGG 0.622073 1_3:-56330396 None:intergenic
GTGCGGCGAAAAGGGAGGTG+TGG 0.625402 1_3:-56327736 None:intergenic
GCCACGTGTAAGAATCTGAT+CGG 0.628623 1_3:-56327905 None:intergenic
GCTGCCGCTGCTGTTACCAG+TGG 0.632649 1_3:+56328093 Msa0127120:CDS
ACAGCAATGGAAGAAGAAAG+TGG 0.636739 1_3:+56330023 Msa0127120:CDS
CGCTGTGAAAGGTATCCAGA+TGG 0.637277 1_3:+56329591 Msa0127120:CDS
TTTATCAATCAAGTCTAGTG+CGG 0.640620 1_3:-56327932 None:intergenic
ACCTGAACAGATGACACAGA+AGG 0.647984 1_3:-56331004 None:intergenic
GTAAATGCATCCAAATCTGA+AGG 0.648586 1_3:+56328237 Msa0127120:CDS
GAGAAACTTGTCATGCGATG+AGG 0.653040 1_3:+56328371 Msa0127120:CDS
GTATTCCTAGCAACAACAGT+AGG 0.653665 1_3:-56328141 None:intergenic
GAGACAACAGCGTCTTACAG+AGG 0.659308 1_3:+56329804 Msa0127120:CDS
TGCAAATGAGGAGAGAACAC+TGG 0.663495 1_3:+56328497 Msa0127120:CDS
AGTATAACAGAGGTTGTGGG+TGG 0.666437 1_3:+56328579 Msa0127120:CDS
GTGTAACTTGATATATGCAA+TGG 0.666867 1_3:+56333195 Msa0127120:three_prime_UTR
CAAGTTTCTCCCCACAAACG+AGG 0.670479 1_3:-56328358 None:intergenic
TTTCGAATTTCCCATCTCGG+AGG 0.670630 1_3:+56332754 Msa0127120:CDS
AACGCCACTGGTAACAGCAG+CGG 0.672510 1_3:-56328097 None:intergenic
CTAACTAGTAATGAACAAAG+TGG 0.676424 1_3:+56327985 Msa0127120:CDS
TGGTTTGCAGAGTATAACAG+AGG 0.684199 1_3:+56328569 Msa0127120:CDS
AAAAGAAGCAAGTCTGCACG+AGG 0.688131 1_3:-56329835 None:intergenic
TCGCCCTTTAACTGGAAGTG+AGG 0.689500 1_3:+56329873 Msa0127120:CDS
GAAGGGGTTGTTATGGAACA+GGG 0.689780 1_3:-56327646 None:intergenic
ACTAGTAATGAACAAAGTGG+TGG 0.690621 1_3:+56327988 Msa0127120:CDS
AGCAAGAAGATCTTCCAATG+TGG 0.693565 1_3:-56332507 None:intergenic
CATTTATCAGAATAATCATG+AGG 0.697867 1_3:+56330068 Msa0127120:CDS
TCCGATCAGATTCTTACACG+TGG 0.704174 1_3:+56327904 Msa0127120:CDS
TTTGCCAATGACTCTCACAA+AGG 0.714611 1_3:-56332880 None:intergenic
CAGGGCGTTTGTAACCGCCG+GGG 0.722210 1_3:-56327846 None:intergenic
AGAAAGATATCTCAAAGACG+GGG 0.744416 1_3:+56329506 Msa0127120:CDS
CCTAGAACACTCTTCCCCGG+CGG 0.758498 1_3:+56327832 Msa0127120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTACATTATTTTACA+AGG - chr1_3:56331513-56331532 None:intergenic 10.0%
!!! ATAGTAAACATTATTTTAAA+AGG + chr1_3:56333277-56333296 Msa0127120:three_prime_UTR 10.0%
!! AGTTATAATAAATAGTAATG+TGG - chr1_3:56329335-56329354 None:intergenic 15.0%
!! ATTGTACATTAAACAAATAT+TGG + chr1_3:56330205-56330224 Msa0127120:intron 15.0%
!! TTGTACATTAAACAAATATT+GGG + chr1_3:56330206-56330225 Msa0127120:intron 15.0%
!!! TTATATGCTATTTTACTTAT+GGG - chr1_3:56331873-56331892 None:intergenic 15.0%
!!! TTTATATGCTATTTTACTTA+TGG - chr1_3:56331874-56331893 None:intergenic 15.0%
!! CATACTAGTAAAATATATTT+CGG + chr1_3:56332614-56332633 Msa0127120:intron 15.0%
!! ATAGTAATGAAATAATATCT+AGG + chr1_3:56332656-56332675 Msa0127120:intron 15.0%
!!! TAAAAGGTTAATTAAGTTTT+TGG + chr1_3:56333293-56333312 Msa0127120:three_prime_UTR 15.0%
!! GTTAAAACTAGTTAACAAAT+AGG + chr1_3:56328985-56329004 Msa0127120:intron 20.0%
!! TTCCTATATTGTTATACTTA+TGG + chr1_3:56329218-56329237 Msa0127120:intron 20.0%
!! TTCCATAAGTATAACAATAT+AGG - chr1_3:56329223-56329242 None:intergenic 20.0%
!!! TTAGTCCTTTTTTTTTAGTA+TGG + chr1_3:56329901-56329920 Msa0127120:intron 20.0%
!!! TAGTCCTTTTTTTTTAGTAT+GGG + chr1_3:56329902-56329921 Msa0127120:intron 20.0%
!! TTATGTTTCATGATTCATAT+TGG + chr1_3:56330096-56330115 Msa0127120:intron 20.0%
!! TATGTTTCATGATTCATATT+GGG + chr1_3:56330097-56330116 Msa0127120:intron 20.0%
!! ATTTGTTTAATGTACAATAG+AGG - chr1_3:56330203-56330222 None:intergenic 20.0%
!! ATATATAACATAAGACTACT+TGG - chr1_3:56330288-56330307 None:intergenic 20.0%
!!! TTTTTATATAGCTTTCTAGA+TGG + chr1_3:56330525-56330544 Msa0127120:CDS 20.0%
!!! TTTTATATAGCTTTCTAGAT+GGG + chr1_3:56330526-56330545 Msa0127120:CDS 20.0%
!!! AAATGATTTTGCATTGAATA+TGG + chr1_3:56330704-56330723 Msa0127120:CDS 20.0%
!! TTAAGAACATACTAATTAAG+AGG - chr1_3:56330817-56330836 None:intergenic 20.0%
!!! ATGTTTTGCTTAAATGTTTT+TGG + chr1_3:56331228-56331247 Msa0127120:intron 20.0%
!!! GTTTTATATAAGTTTGGTTT+CGG - chr1_3:56331783-56331802 None:intergenic 20.0%
!! GACAATATTCATTCATATAT+GGG - chr1_3:56332281-56332300 None:intergenic 20.0%
!! AGACAATATTCATTCATATA+TGG - chr1_3:56332282-56332301 None:intergenic 20.0%
!! ATTTCATTACTATCTCTTAA+AGG - chr1_3:56332649-56332668 None:intergenic 20.0%
!! TTATATGATTAATGATTTCC+TGG - chr1_3:56333160-56333179 None:intergenic 20.0%
!!! TGATTTGGAACTTTTAAATC+AGG + chr1_3:56328293-56328312 Msa0127120:CDS 25.0%
!! GAACTTTTAAATCAGGAAAT+TGG + chr1_3:56328300-56328319 Msa0127120:CDS 25.0%
!!! TTACTAGTTTGGAAAGTTTT+GGG + chr1_3:56328430-56328449 Msa0127120:CDS 25.0%
! TTGCTTCGTAAATTATTTGA+TGG + chr1_3:56328468-56328487 Msa0127120:CDS 25.0%
!! TTCGTAAATTATTTGATGGT+GGG + chr1_3:56328472-56328491 Msa0127120:CDS 25.0%
! AAATTAGTCAATGAGAGTAA+TGG + chr1_3:56328549-56328568 Msa0127120:CDS 25.0%
!! ATTTGTTAAACTGGAAGATA+GGG + chr1_3:56328602-56328621 Msa0127120:CDS 25.0%
! ACACAAAGTAAACAATATAC+TGG - chr1_3:56328773-56328792 None:intergenic 25.0%
! TTGTTTACTTTGTGTTGAAT+TGG + chr1_3:56328778-56328797 Msa0127120:intron 25.0%
! AACTACTTTGAACAATATGT+TGG + chr1_3:56329175-56329194 Msa0127120:intron 25.0%
! ACTACTTTGAACAATATGTT+GGG + chr1_3:56329176-56329195 Msa0127120:intron 25.0%
! ATTTATTTGACTCTATTGTC+AGG + chr1_3:56329437-56329456 Msa0127120:intron 25.0%
! TTTATTTGACTCTATTGTCA+GGG + chr1_3:56329438-56329457 Msa0127120:intron 25.0%
!!! TTAGTTTTCTCCTTATGTTT+TGG + chr1_3:56329670-56329689 Msa0127120:intron 25.0%
!!! AGTCCTTTTTTTTTAGTATG+GGG + chr1_3:56329903-56329922 Msa0127120:intron 25.0%
!!! GTTGTTTTATGTTCTTTTTC+AGG + chr1_3:56329981-56330000 Msa0127120:intron 25.0%
! CATTTATCAGAATAATCATG+AGG + chr1_3:56330068-56330087 Msa0127120:CDS 25.0%
!! GTTCATAATTTTTGAATGTC+AGG + chr1_3:56330779-56330798 Msa0127120:intron 25.0%
! AGTATGTTCTTAAATTGCAA+TGG + chr1_3:56330824-56330843 Msa0127120:intron 25.0%
!! GTTGTATCATATGTTTTCAA+AGG + chr1_3:56330929-56330948 Msa0127120:CDS 25.0%
! AAAATAGTAAACATGACTAC+AGG - chr1_3:56331071-56331090 None:intergenic 25.0%
! TTTAATCTCGCATTAGTATT+TGG - chr1_3:56331174-56331193 None:intergenic 25.0%
! ACATTTAAGCAAAACATGAA+TGG - chr1_3:56331225-56331244 None:intergenic 25.0%
!!! CTTAAATGTTTTTGGTTGAT+TGG + chr1_3:56331236-56331255 Msa0127120:intron 25.0%
! TACTTGGAGATTATGAAAAT+TGG + chr1_3:56331269-56331288 Msa0127120:CDS 25.0%
!! ACTATTTTCATGAATCAATG+AGG - chr1_3:56331356-56331375 None:intergenic 25.0%
! ATGTAAAAAATCTTCTCTTC+TGG + chr1_3:56331522-56331541 Msa0127120:intron 25.0%
!! TTCTCATGATTTGAAATCAA+AGG + chr1_3:56331617-56331636 Msa0127120:intron 25.0%
! AACCAAACTTATATAAAACC+AGG + chr1_3:56331784-56331803 Msa0127120:intron 25.0%
! ACCAAACTTATATAAAACCA+GGG + chr1_3:56331785-56331804 Msa0127120:intron 25.0%
! TATATGTGTAACAAACTTTC+CGG + chr1_3:56331810-56331829 Msa0127120:intron 25.0%
!! AAACTTCCATTTAAAATGTC+CGG - chr1_3:56331832-56331851 None:intergenic 25.0%
!! ATTGATCATTCATCATTTTG+AGG - chr1_3:56332006-56332025 None:intergenic 25.0%
! ATGATGAATGATCAATCAAT+AGG + chr1_3:56332010-56332029 Msa0127120:intron 25.0%
!! ATAGGTTTGTTTAAAAGTTG+AGG + chr1_3:56332028-56332047 Msa0127120:intron 25.0%
! AAATATTATATTTACCGCTG+AGG - chr1_3:56332312-56332331 None:intergenic 25.0%
!! TGCATTTTCAAATACAACTT+GGG - chr1_3:56332592-56332611 None:intergenic 25.0%
!! ATGCATTTTCAAATACAACT+TGG - chr1_3:56332593-56332612 None:intergenic 25.0%
! ATTAATGATTTCCTGGAATA+GGG - chr1_3:56333153-56333172 None:intergenic 25.0%
!! TACCATGGATTTGATTTGAA+GGG - chr1_3:56327626-56327645 None:intergenic 30.0%
GAAACATTATTGGAAGTGAT+GGG - chr1_3:56327775-56327794 None:intergenic 30.0%
AGAAACATTATTGGAAGTGA+TGG - chr1_3:56327776-56327795 None:intergenic 30.0%
TTTATCAATCAAGTCTAGTG+CGG - chr1_3:56327935-56327954 None:intergenic 30.0%
TGATAAAGCAGTTTCCAAAT+CGG + chr1_3:56327948-56327967 Msa0127120:CDS 30.0%
CTAACTAGTAATGAACAAAG+TGG + chr1_3:56327985-56328004 Msa0127120:CDS 30.0%
!!! GGTGCTGATTTTCTTATTTA+TGG + chr1_3:56328258-56328277 Msa0127120:CDS 30.0%
!! GCTGATTTTCTTATTTATGG+TGG + chr1_3:56328261-56328280 Msa0127120:CDS 30.0%
!! GATTTTCTTATTTATGGTGG+TGG + chr1_3:56328264-56328283 Msa0127120:CDS 30.0%
!!! TAGTGGTTTTGTTACTAGTT+TGG + chr1_3:56328419-56328438 Msa0127120:CDS 30.0%
!! GTTACTAGTTTGGAAAGTTT+TGG + chr1_3:56328429-56328448 Msa0127120:CDS 30.0%
CTTCGTAAATTATTTGATGG+TGG + chr1_3:56328471-56328490 Msa0127120:CDS 30.0%
!! GATTTGTTAAACTGGAAGAT+AGG + chr1_3:56328601-56328620 Msa0127120:CDS 30.0%
GGAGAAACAGTTAATAGAAA+TGG + chr1_3:56328623-56328642 Msa0127120:CDS 30.0%
AACAGTTAATAGAAATGGAG+AGG + chr1_3:56328628-56328647 Msa0127120:CDS 30.0%
!! GATCTTTTAACTGAAACAGT+TGG + chr1_3:56328701-56328720 Msa0127120:intron 30.0%
ACTTTGTGTTGAATTGGAAT+TGG + chr1_3:56328784-56328803 Msa0127120:intron 30.0%
! AATTGGTTTCAAATGACAGA+TGG + chr1_3:56328801-56328820 Msa0127120:intron 30.0%
ACCACTATAACCAATAAGAA+CGG - chr1_3:56328871-56328890 None:intergenic 30.0%
CTCTAGTAAATGCTTATACA+TGG - chr1_3:56329077-56329096 None:intergenic 30.0%
!! TTTACTAGAGTGTTGATTCA+TGG + chr1_3:56329087-56329106 Msa0127120:intron 30.0%
!! AACAATATGTTGGGTTAGTT+GGG + chr1_3:56329185-56329204 Msa0127120:intron 30.0%
TTATTTGACTCTATTGTCAG+GGG + chr1_3:56329439-56329458 Msa0127120:intron 30.0%
!!! AGCGTTGTTTTTCAATATCT+AGG - chr1_3:56329575-56329594 None:intergenic 30.0%
TAGCAAATATATTGACCATC+TGG - chr1_3:56329609-56329628 None:intergenic 30.0%
! TGACTTACTTCTCTAAGAAT+TGG - chr1_3:56329642-56329661 None:intergenic 30.0%
CAAACAGAAATTGTAACCAA+GGG - chr1_3:56329700-56329719 None:intergenic 30.0%
! AATTGTCATCTGTTTTCAGA+AGG - chr1_3:56329752-56329771 None:intergenic 30.0%
ATGCCCCATACTAAAAAAAA+AGG - chr1_3:56329909-56329928 None:intergenic 30.0%
AGCTAAAGACAATAACATTG+GGG - chr1_3:56330238-56330257 None:intergenic 30.0%
CAGCTAAAGACAATAACATT+GGG - chr1_3:56330239-56330258 None:intergenic 30.0%
ACAGCTAAAGACAATAACAT+TGG - chr1_3:56330240-56330259 None:intergenic 30.0%
!! CTGTTCTTTTGTACTGATAT+AGG + chr1_3:56330256-56330275 Msa0127120:intron 30.0%
CGTAAAGAGATTGTTGAATA+CGG + chr1_3:56330356-56330375 Msa0127120:CDS 30.0%
TATGAACTTGTAACATACCA+TGG - chr1_3:56330766-56330785 None:intergenic 30.0%
TATGTCATTCTGAATTCTTG+AGG - chr1_3:56330978-56330997 None:intergenic 30.0%
TGATTTATTCAACCATAAGC+TGG + chr1_3:56331106-56331125 Msa0127120:intron 30.0%
ACATATGAGTTGCTAAAGAA+AGG + chr1_3:56331391-56331410 Msa0127120:CDS 30.0%
CATATGAGTTGCTAAAGAAA+GGG + chr1_3:56331392-56331411 Msa0127120:CDS 30.0%
ATATGAGTTGCTAAAGAAAG+GGG + chr1_3:56331393-56331412 Msa0127120:CDS 30.0%
TCAGTTGAACAACTAACTAA+TGG + chr1_3:56331692-56331711 Msa0127120:intron 30.0%
TGAACAACTAACTAATGGAA+TGG + chr1_3:56331697-56331716 Msa0127120:intron 30.0%
!!! ACCCTGGTTTTATATAAGTT+TGG - chr1_3:56331789-56331808 None:intergenic 30.0%
! AACTTTCCGGACATTTTAAA+TGG + chr1_3:56331823-56331842 Msa0127120:intron 30.0%
! ATGTCTAAGATATTGCCTTA+AGG + chr1_3:56331925-56331944 Msa0127120:intron 30.0%
TTAGCATTCAGAATGATTTC+TGG + chr1_3:56331948-56331967 Msa0127120:intron 30.0%
ATAACCAGTGTGATTTATTC+AGG + chr1_3:56332062-56332081 Msa0127120:intron 30.0%
ACTTAATTGTTGATCAGACA+AGG - chr1_3:56332210-56332229 None:intergenic 30.0%
AGTCTAACAAAGACTAAACA+GGG - chr1_3:56332252-56332271 None:intergenic 30.0%
AAGTCTAACAAAGACTAAAC+AGG - chr1_3:56332253-56332272 None:intergenic 30.0%
AAATTGTTTAGTGACAGTAG+TGG - chr1_3:56332389-56332408 None:intergenic 30.0%
! TTCCTTCTGTGTAGATTTTA+GGG + chr1_3:56332423-56332442 Msa0127120:intron 30.0%
! GCATTTTCAAATACAACTTG+GGG - chr1_3:56332591-56332610 None:intergenic 30.0%
!!! AGTCGATATTTGTTTTACTC+AGG + chr1_3:56332721-56332740 Msa0127120:intron 30.0%
TCATTCTGTTATTGATGCAA+TGG + chr1_3:56333041-56333060 Msa0127120:three_prime_UTR 30.0%
GATTAATGATTTCCTGGAAT+AGG - chr1_3:56333154-56333173 None:intergenic 30.0%
GTGTAACTTGATATATGCAA+TGG + chr1_3:56333195-56333214 Msa0127120:three_prime_UTR 30.0%
GGGAATGAAGATAGAAAGAA+GGG - chr1_3:56327604-56327623 None:intergenic 35.0%
!! ACCATGGATTTGATTTGAAG+GGG - chr1_3:56327625-56327644 None:intergenic 35.0%
!! GTACCATGGATTTGATTTGA+AGG - chr1_3:56327627-56327646 None:intergenic 35.0%
GAAATGGCGAGAAACATTAT+TGG - chr1_3:56327785-56327804 None:intergenic 35.0%
AATCACAATTCCAACCGATT+TGG - chr1_3:56327965-56327984 None:intergenic 35.0%
ACTAGTAATGAACAAAGTGG+TGG + chr1_3:56327988-56328007 Msa0127120:CDS 35.0%
GTTGCTAGGAATACAATGTT+AGG + chr1_3:56328150-56328169 Msa0127120:CDS 35.0%
GTAAATGCATCCAAATCTGA+AGG + chr1_3:56328237-56328256 Msa0127120:CDS 35.0%
AAAATCAGCACCTTCAGATT+TGG - chr1_3:56328250-56328269 None:intergenic 35.0%
!! TTTCTTATTTATGGTGGTGG+TGG + chr1_3:56328267-56328286 Msa0127120:CDS 35.0%
GTTAATAGAAATGGAGAGGT+CGG + chr1_3:56328632-56328651 Msa0127120:CDS 35.0%
TTCAGTTAAAAGATCACCAG+AGG - chr1_3:56328696-56328715 None:intergenic 35.0%
TGCTGAATCTCAACAAATTC+TGG + chr1_3:56328898-56328917 Msa0127120:intron 35.0%
CTAATACCAATGTATATCCC+AGG - chr1_3:56328926-56328945 None:intergenic 35.0%
CAAATAGGTGCTCTTTATTG+TGG + chr1_3:56329000-56329019 Msa0127120:intron 35.0%
GTATACTTACAGTGAGTAGT+TGG + chr1_3:56329109-56329128 Msa0127120:intron 35.0%
!! GAACAATATGTTGGGTTAGT+TGG + chr1_3:56329184-56329203 Msa0127120:intron 35.0%
! ATGAGTATTGTCAGCTATTG+CGG - chr1_3:56329257-56329276 None:intergenic 35.0%
TAGCTGACAATACTCATCAT+AGG + chr1_3:56329260-56329279 Msa0127120:intron 35.0%
AACTTTCCAACTTTCACCTT+AGG + chr1_3:56329283-56329302 Msa0127120:intron 35.0%
TCAGATAACTACTCAACCTA+AGG - chr1_3:56329302-56329321 None:intergenic 35.0%
TTTCTGTCTCACAAAGCAAT+TGG + chr1_3:56329355-56329374 Msa0127120:intron 35.0%
TATTTGACTCTATTGTCAGG+GGG + chr1_3:56329440-56329459 Msa0127120:intron 35.0%
GGAGAAAGATATCTCAAAGA+CGG + chr1_3:56329504-56329523 Msa0127120:CDS 35.0%
GAGAAAGATATCTCAAAGAC+GGG + chr1_3:56329505-56329524 Msa0127120:CDS 35.0%
AGAAAGATATCTCAAAGACG+GGG + chr1_3:56329506-56329525 Msa0127120:CDS 35.0%
AATGTGATCTCATTCGTTGT+TGG - chr1_3:56329537-56329556 None:intergenic 35.0%
TTGAAAAACAACGCTGTGAA+AGG + chr1_3:56329580-56329599 Msa0127120:CDS 35.0%
GCAAACAGAAATTGTAACCA+AGG - chr1_3:56329701-56329720 None:intergenic 35.0%
CAATTTCTGTTTGCAATTCG+TGG + chr1_3:56329707-56329726 Msa0127120:intron 35.0%
ATGACAATTGTTGATACACC+TGG + chr1_3:56329763-56329782 Msa0127120:CDS 35.0%
TGAAGGATTACATTAGTTCC+AGG - chr1_3:56329784-56329803 None:intergenic 35.0%
ATACCTCACTTCCAGTTAAA+GGG - chr1_3:56329879-56329898 None:intergenic 35.0%
TTCTTCGTTATTCACAGCAA+TGG + chr1_3:56330010-56330029 Msa0127120:CDS 35.0%
TAGATCAATCCTAGAAGCTT+CGG - chr1_3:56330128-56330147 None:intergenic 35.0%
GCTAAAGACAATAACATTGG+GGG - chr1_3:56330237-56330256 None:intergenic 35.0%
CTTTACGTTGTCCTTAATGA+AGG - chr1_3:56330343-56330362 None:intergenic 35.0%
TGCTCTTGAAGCAAAACTTA+TGG + chr1_3:56330413-56330432 Msa0127120:CDS 35.0%
TCAAGCTCGTAAAAGCTATT+GGG - chr1_3:56330501-56330520 None:intergenic 35.0%
CTTAAACTTGAAACACCTGT+TGG + chr1_3:56330579-56330598 Msa0127120:CDS 35.0%
!!! CATCTGTTCAGGTTAGTTTT+TGG + chr1_3:56331014-56331033 Msa0127120:intron 35.0%
GATTGGACACAGAAAATACT+TGG + chr1_3:56331253-56331272 Msa0127120:intron 35.0%
CTTGTATATTCTCCCTTGTT+GGG - chr1_3:56331311-56331330 None:intergenic 35.0%
ACGAACTAAAAGAGAACTTG+AGG - chr1_3:56331549-56331568 None:intergenic 35.0%
CTGCAATTGAACTAAAGAGA+TGG - chr1_3:56331591-56331610 None:intergenic 35.0%
! CTGTGCCATTGATATCAATA+AGG + chr1_3:56331659-56331678 Msa0127120:intron 35.0%
!! CTTGGCCTTATTGATATCAA+TGG - chr1_3:56331667-56331686 None:intergenic 35.0%
TTTGTTACACATATAGACCC+TGG - chr1_3:56331805-56331824 None:intergenic 35.0%
CATTCTGAATGCTAACCTTA+AGG - chr1_3:56331943-56331962 None:intergenic 35.0%
! TTTGTATTGCCACTTATCGT+TGG + chr1_3:56332115-56332134 Msa0127120:intron 35.0%
! TTCCCTATAGTAACGTTTTC+TGG + chr1_3:56332147-56332166 Msa0127120:intron 35.0%
TGCCAGAAAACGTTACTATA+GGG - chr1_3:56332152-56332171 None:intergenic 35.0%
! CTTGTTATATAGTAGCTTCC+AGG - chr1_3:56332177-56332196 None:intergenic 35.0%
! CTTCCTTCTGTGTAGATTTT+AGG + chr1_3:56332422-56332441 Msa0127120:intron 35.0%
! CTAGGCAATGTTGTTTGAAA+TGG + chr1_3:56332674-56332693 Msa0127120:intron 35.0%
CTATTTCGAATTTCCCATCT+CGG + chr1_3:56332751-56332770 Msa0127120:CDS 35.0%
GTGTGATAGATAAGGTGAAA+AGG + chr1_3:56332781-56332800 Msa0127120:CDS 35.0%
! TTCTTCAAGTTCATTTGCCA+AGG - chr1_3:56332817-56332836 None:intergenic 35.0%
GACTGAAGCAGTAGAAAATT+TGG + chr1_3:56332854-56332873 Msa0127120:CDS 35.0%
TGAAATATCCCAAAGAACTC+AGG - chr1_3:56333024-56333043 None:intergenic 35.0%
CATGGCAAATTAAAAGTGGA+TGG - chr1_3:56333070-56333089 None:intergenic 35.0%
!!! CATCCACTTTTAATTTGCCA+TGG + chr1_3:56333068-56333087 Msa0127120:three_prime_UTR 35.0%
!!! AGGCGCTATTTTTGAATCAA+TGG + chr1_3:56333108-56333127 Msa0127120:three_prime_UTR 35.0%
TGAAGATAGAAAGAAGGGAG+AGG - chr1_3:56327599-56327618 None:intergenic 40.0%
GGGGAATGAAGATAGAAAGA+AGG - chr1_3:56327605-56327624 None:intergenic 40.0%
!! CCATGGATTTGATTTGAAGG+GGG - chr1_3:56327624-56327643 None:intergenic 40.0%
GGAATAAGAAGGGGTTGTTA+TGG - chr1_3:56327656-56327675 None:intergenic 40.0%
! ATTATTGGAAGTGATGGGAG+AGG - chr1_3:56327770-56327789 None:intergenic 40.0%
! TGAGTTGGAGAATGAGAGTA+GGG - chr1_3:56327882-56327901 None:intergenic 40.0%
!! TTGAGTTGGAGAATGAGAGT+AGG - chr1_3:56327883-56327902 None:intergenic 40.0%
AAAGCAGTTTCCAAATCGGT+TGG + chr1_3:56327952-56327971 Msa0127120:CDS 40.0%
AACAGTAGGAAGACCTTGAT+CGG - chr1_3:56328130-56328149 None:intergenic 40.0%
GTATTCCTAGCAACAACAGT+AGG - chr1_3:56328144-56328163 None:intergenic 40.0%
GTTAGGTTCCAATAGCGAAT+TGG + chr1_3:56328167-56328186 Msa0127120:CDS 40.0%
AAGAACCACCAATTCGCTAT+TGG - chr1_3:56328178-56328197 None:intergenic 40.0%
TGTACAAATCTAGCGACCAA+TGG - chr1_3:56328201-56328220 None:intergenic 40.0%
! TGGTTTGCAGAGTATAACAG+AGG + chr1_3:56328569-56328588 Msa0127120:CDS 40.0%
CAGAGTATAACAGAGGTTGT+GGG + chr1_3:56328576-56328595 Msa0127120:CDS 40.0%
!! TGTGGGTGGATTTGTTAAAC+TGG + chr1_3:56328593-56328612 Msa0127120:CDS 40.0%
TATAAAGAAAGCTGCACCTC+TGG + chr1_3:56328677-56328696 Msa0127120:CDS 40.0%
TGGTTTCAAATGACAGATGG+AGG + chr1_3:56328804-56328823 Msa0127120:intron 40.0%
! GCCGTTCTTATTGGTTATAG+TGG + chr1_3:56328867-56328886 Msa0127120:CDS 40.0%
!! TCTCAACAAATTCTGGTTCC+TGG + chr1_3:56328905-56328924 Msa0127120:intron 40.0%
!! CTCAACAAATTCTGGTTCCT+GGG + chr1_3:56328906-56328925 Msa0127120:intron 40.0%
ACTCAACCTAAGGTGAAAGT+TGG - chr1_3:56329292-56329311 None:intergenic 40.0%
TGGTGAGATGCAAATACAAC+TGG + chr1_3:56329375-56329394 Msa0127120:intron 40.0%
ACTGTGATTAATGCGCTTCT+TGG + chr1_3:56329483-56329502 Msa0127120:CDS 40.0%
! ACTTCTCTAAGAATTGGAGC+TGG - chr1_3:56329636-56329655 None:intergenic 40.0%
CAAGGGAGAACCAAAACATA+AGG - chr1_3:56329683-56329702 None:intergenic 40.0%
!!! CTTATGTTTTGGTTCTCCCT+TGG + chr1_3:56329681-56329700 Msa0127120:intron 40.0%
AAGGATGAAGAAAACTGCTG+AGG - chr1_3:56329733-56329752 None:intergenic 40.0%
CATACCTCACTTCCAGTTAA+AGG - chr1_3:56329880-56329899 None:intergenic 40.0%
CTTTAACTGGAAGTGAGGTA+TGG + chr1_3:56329878-56329897 Msa0127120:intron 40.0%
AAACAACATGTCATACCCCT+GGG - chr1_3:56329968-56329987 None:intergenic 40.0%
AAAACAACATGTCATACCCC+TGG - chr1_3:56329969-56329988 None:intergenic 40.0%
ACAGCAATGGAAGAAGAAAG+TGG + chr1_3:56330023-56330042 Msa0127120:CDS 40.0%
!! AGCTTCTAGGATTGATCTAG+TGG + chr1_3:56330129-56330148 Msa0127120:intron 40.0%
TAGGATTGATCTAGTGGTGA+GGG + chr1_3:56330135-56330154 Msa0127120:intron 40.0%
TCACAATTCAATGCAGCTTG+AGG + chr1_3:56330308-56330327 Msa0127120:intron 40.0%
GGAAGCAATGTCCTTCATTA+AGG + chr1_3:56330329-56330348 Msa0127120:CDS 40.0%
! CTTATGGCTACCTCTAGTTT+CGG + chr1_3:56330429-56330448 Msa0127120:CDS 40.0%
! TTATGGCTACCTCTAGTTTC+GGG + chr1_3:56330430-56330449 Msa0127120:CDS 40.0%
GAAGAATTGTTGTCAGTCTC+TGG + chr1_3:56330462-56330481 Msa0127120:CDS 40.0%
!! TCAGTCTCTGGTTCTCAATA+TGG + chr1_3:56330474-56330493 Msa0127120:CDS 40.0%
CTCAAGCTCGTAAAAGCTAT+TGG - chr1_3:56330502-56330521 None:intergenic 40.0%
AATCTGTCTGCAATTCCAAC+AGG - chr1_3:56330597-56330616 None:intergenic 40.0%
TGGAAAATGAGAGCCTTTCT+TGG + chr1_3:56330724-56330743 Msa0127120:CDS 40.0%
AAAATGAGAGCCTTTCTTGG+AGG + chr1_3:56330727-56330746 Msa0127120:CDS 40.0%
! GAGTTTGTTTCCTCCAAGAA+AGG - chr1_3:56330740-56330759 None:intergenic 40.0%
GAGGAAACAAACTCTATCCA+TGG + chr1_3:56330746-56330765 Msa0127120:CDS 40.0%
ATCCACTAAATCACGTGTTG+TGG + chr1_3:56330865-56330884 Msa0127120:CDS 40.0%
GTCATTCTGAATTCTTGAGG+TGG - chr1_3:56330975-56330994 None:intergenic 40.0%
AAAAAGTGGAGTCCAGCTTA+TGG - chr1_3:56331121-56331140 None:intergenic 40.0%
TTGGATGTACTAGCCATCTT+GGG - chr1_3:56331155-56331174 None:intergenic 40.0%
TTTGGATGTACTAGCCATCT+TGG - chr1_3:56331156-56331175 None:intergenic 40.0%
! TCTCCCTTGTTGGGTATTTT+TGG - chr1_3:56331302-56331321 None:intergenic 40.0%
CCTTGTATATTCTCCCTTGT+TGG - chr1_3:56331312-56331331 None:intergenic 40.0%
CCAACAAGGGAGAATATACA+AGG + chr1_3:56331309-56331328 Msa0127120:CDS 40.0%
!! AGGAATCTTTTGAGAAGCGA+TGG + chr1_3:56331329-56331348 Msa0127120:CDS 40.0%
GTTGTTCAACTGAAGTGACT+TGG - chr1_3:56331685-56331704 None:intergenic 40.0%
GCAACCTGAATAAATCACAC+TGG - chr1_3:56332069-56332088 None:intergenic 40.0%
GTGCCAGAAAACGTTACTAT+AGG - chr1_3:56332153-56332172 None:intergenic 40.0%
TTGTTTAGTGACAGTAGTGG+TGG - chr1_3:56332386-56332405 None:intergenic 40.0%
GTCCCTAAAATCTACACAGA+AGG - chr1_3:56332428-56332447 None:intergenic 40.0%
!! GTGTAGATTTTAGGGACTCT+TGG + chr1_3:56332431-56332450 Msa0127120:intron 40.0%
ATCTGTACTGCAAACCACAT+TGG + chr1_3:56332493-56332512 Msa0127120:CDS 40.0%
AGCAAGAAGATCTTCCAATG+TGG - chr1_3:56332510-56332529 None:intergenic 40.0%
TTGGAAGATCTTCTTGCTCT+TGG + chr1_3:56332512-56332531 Msa0127120:CDS 40.0%
! GCTCTTGGAATTTGTTCTGT+TGG + chr1_3:56332527-56332546 Msa0127120:CDS 40.0%
! CTTGGAATTTGTTCTGTTGG+CGG + chr1_3:56332530-56332549 Msa0127120:CDS 40.0%
! TTGGAATTTGTTCTGTTGGC+GGG + chr1_3:56332531-56332550 Msa0127120:CDS 40.0%
GAAAAGGAAAGCAGATACCT+TGG + chr1_3:56332797-56332816 Msa0127120:CDS 40.0%
AACTTGAAGAAGCCATGAAG+AGG + chr1_3:56332826-56332845 Msa0127120:CDS 40.0%
ACTTGAAGAAGCCATGAAGA+GGG + chr1_3:56332827-56332846 Msa0127120:CDS 40.0%
TTCAGTCAAATCCCTCTTCA+TGG - chr1_3:56332841-56332860 None:intergenic 40.0%
GATACCTTTGTGAGAGTCAT+TGG + chr1_3:56332876-56332895 Msa0127120:CDS 40.0%
TTTGCCAATGACTCTCACAA+AGG - chr1_3:56332883-56332902 None:intergenic 40.0%
! CTCAGGACACATGAAGATTT+TGG - chr1_3:56333007-56333026 None:intergenic 40.0%
TTCATGTGTCCTGAGTTCTT+TGG + chr1_3:56333012-56333031 Msa0127120:exon 40.0%
TCATGTGTCCTGAGTTCTTT+GGG + chr1_3:56333013-56333032 Msa0127120:exon 40.0%
AGGCCATGGCAAATTAAAAG+TGG - chr1_3:56333074-56333093 None:intergenic 40.0%
ATTTCCTGGAATAGGGTTCA+AGG - chr1_3:56333146-56333165 None:intergenic 40.0%
GATAGAAAGAAGGGAGAGGA+AGG - chr1_3:56327595-56327614 None:intergenic 45.0%
CCCCCTTCAAATCAAATCCA+TGG + chr1_3:56327621-56327640 Msa0127120:exon 45.0%
! TGTTATGGAACAGGGTACCA+TGG - chr1_3:56327641-56327660 None:intergenic 45.0%
GAAGGGGTTGTTATGGAACA+GGG - chr1_3:56327649-56327668 None:intergenic 45.0%
AGAAGGGGTTGTTATGGAAC+AGG - chr1_3:56327650-56327669 None:intergenic 45.0%
TAGGAGGGAGGAATAAGAAG+GGG - chr1_3:56327665-56327684 None:intergenic 45.0%
GTAGGAGGGAGGAATAAGAA+GGG - chr1_3:56327666-56327685 None:intergenic 45.0%
AGTAGGAGGGAGGAATAAGA+AGG - chr1_3:56327667-56327686 None:intergenic 45.0%
TTCTCGCCATTTCTTCCCTA+AGG + chr1_3:56327792-56327811 Msa0127120:CDS 45.0%
! GAGTAGGGACTTTGAGTTCA+GGG - chr1_3:56327867-56327886 None:intergenic 45.0%
! AGAGTAGGGACTTTGAGTTC+AGG - chr1_3:56327868-56327887 None:intergenic 45.0%
GAATCTGATCGGAGTTGAGT+TGG - chr1_3:56327897-56327916 None:intergenic 45.0%
TCCGATCAGATTCTTACACG+TGG + chr1_3:56327904-56327923 Msa0127120:CDS 45.0%
GCCACGTGTAAGAATCTGAT+CGG - chr1_3:56327908-56327927 None:intergenic 45.0%
GTCTTCCTACTGTTGTTGCT+AGG + chr1_3:56328136-56328155 Msa0127120:CDS 45.0%
AGGTTCCAATAGCGAATTGG+TGG + chr1_3:56328170-56328189 Msa0127120:CDS 45.0%
! CGAATTGGTGGTTCTTCCAT+TGG + chr1_3:56328182-56328201 Msa0127120:CDS 45.0%
!! CTTATTTATGGTGGTGGTGG+TGG + chr1_3:56328270-56328289 Msa0127120:CDS 45.0%
ACCTATGTTTGCCTCGTTTG+TGG + chr1_3:56328347-56328366 Msa0127120:CDS 45.0%
CCTATGTTTGCCTCGTTTGT+GGG + chr1_3:56328348-56328367 Msa0127120:CDS 45.0%
CTATGTTTGCCTCGTTTGTG+GGG + chr1_3:56328349-56328368 Msa0127120:CDS 45.0%
GAGAAACTTGTCATGCGATG+AGG + chr1_3:56328371-56328390 Msa0127120:CDS 45.0%
! GCTTCGAGTTTACTTGCTTC+TGG + chr1_3:56328393-56328412 Msa0127120:CDS 45.0%
! TTACTTGCTTCTGGTGCTAG+TGG + chr1_3:56328402-56328421 Msa0127120:CDS 45.0%
!! TGATGGTGGGTTTGCAAATG+AGG + chr1_3:56328485-56328504 Msa0127120:CDS 45.0%
TGCAAATGAGGAGAGAACAC+TGG + chr1_3:56328497-56328516 Msa0127120:CDS 45.0%
GCAGAGTATAACAGAGGTTG+TGG + chr1_3:56328575-56328594 Msa0127120:CDS 45.0%
AGTATAACAGAGGTTGTGGG+TGG + chr1_3:56328579-56328598 Msa0127120:CDS 45.0%
GATTGACGAGCCGTTCTTAT+TGG + chr1_3:56328858-56328877 Msa0127120:CDS 45.0%
CTGGTTCCTGGGATATACAT+TGG + chr1_3:56328917-56328936 Msa0127120:intron 45.0%
! CTCTAAGAATTGGAGCTGGA+AGG - chr1_3:56329632-56329651 None:intergenic 45.0%
TAAGACGCTGTTGTCTCTGA+AGG - chr1_3:56329801-56329820 None:intergenic 45.0%
AAAAGAAGCAAGTCTGCACG+AGG - chr1_3:56329838-56329857 None:intergenic 45.0%
TATAGTGTACTTACCCACCC+AGG + chr1_3:56329948-56329967 Msa0127120:intron 45.0%
ATAGTGTACTTACCCACCCA+GGG + chr1_3:56329949-56329968 Msa0127120:intron 45.0%
CTAGGATTGATCTAGTGGTG+AGG + chr1_3:56330134-56330153 Msa0127120:intron 45.0%
TGATCTAGTGGTGAGGGATT+TGG + chr1_3:56330141-56330160 Msa0127120:intron 45.0%
GATCTAGTGGTGAGGGATTT+GGG + chr1_3:56330142-56330161 Msa0127120:intron 45.0%
GGATTTGGGTAGTATGCATG+AGG + chr1_3:56330156-56330175 Msa0127120:intron 45.0%
GGTAGTATGCATGAGGTCTT+AGG + chr1_3:56330163-56330182 Msa0127120:intron 45.0%
GTTGAGTTTCCCGAAACTAG+AGG - chr1_3:56330442-56330461 None:intergenic 45.0%
TATTGCAGCCAAATCCTGCT+TGG - chr1_3:56330664-56330683 None:intergenic 45.0%
CTCCACAACACGTGATTTAG+TGG - chr1_3:56330870-56330889 None:intergenic 45.0%
TTCTGAATTCTTGAGGTGGC+AGG - chr1_3:56330971-56330990 None:intergenic 45.0%
TCCTTCTGTGTCATCTGTTC+AGG + chr1_3:56331003-56331022 Msa0127120:CDS 45.0%
ACCTGAACAGATGACACAGA+AGG - chr1_3:56331007-56331026 None:intergenic 45.0%
!!! GCTGGACTCCACTTTTTCTT+TGG + chr1_3:56331124-56331143 Msa0127120:intron 45.0%
GGGGACATCCAAAGAAAAAG+TGG - chr1_3:56331135-56331154 None:intergenic 45.0%
TTCTTTGGATGTCCCCAAGA+TGG + chr1_3:56331139-56331158 Msa0127120:intron 45.0%
TGGATGTACTAGCCATCTTG+GGG - chr1_3:56331154-56331173 None:intergenic 45.0%
AGCGCCAAAAATACCCAACA+AGG + chr1_3:56331295-56331314 Msa0127120:CDS 45.0%
GCGCCAAAAATACCCAACAA+GGG + chr1_3:56331296-56331315 Msa0127120:CDS 45.0%
CTAAAGAAAGGGGATCAAGC+TGG + chr1_3:56331403-56331422 Msa0127120:CDS 45.0%
TGAGCAAGAAGTTCGTGAGA+TGG + chr1_3:56331474-56331493 Msa0127120:CDS 45.0%
CAAAGGCAACTTTGCTGATG+TGG + chr1_3:56331634-56331653 Msa0127120:intron 45.0%
GGTGATCTATGATGCTAGAG+AGG + chr1_3:56331969-56331988 Msa0127120:intron 45.0%
CACATGAAGCCAACGATAAG+TGG - chr1_3:56332127-56332146 None:intergenic 45.0%
ATTGTCTGAGTCTTCCTCAG+CGG + chr1_3:56332295-56332314 Msa0127120:intron 45.0%
TTTAGTGACAGTAGTGGTGG+TGG - chr1_3:56332383-56332402 None:intergenic 45.0%
TTAGGGACTCTTGGTCAACT+AGG + chr1_3:56332440-56332459 Msa0127120:CDS 45.0%
TTTCGAATTTCCCATCTCGG+AGG + chr1_3:56332754-56332773 Msa0127120:CDS 45.0%
TGGCAAACCTTACCAAGATC+AGG + chr1_3:56332896-56332915 Msa0127120:CDS 45.0%
TCTTGCTTAAAGAGAGGCCA+TGG - chr1_3:56333088-56333107 None:intergenic 45.0%
TGGCCTCTCTTTAAGCAAGA+AGG + chr1_3:56333088-56333107 Msa0127120:three_prime_UTR 45.0%
ATGTCCTTGAACCCTATTCC+AGG + chr1_3:56333139-56333158 Msa0127120:three_prime_UTR 45.0%
AGGAGGGAGATATGGATGGA+TGG - chr1_3:56327575-56327594 None:intergenic 50.0%
AGGAAGGAGGGAGATATGGA+TGG - chr1_3:56327579-56327598 None:intergenic 50.0%
GAAAGAAGGGAGAGGAAGGA+GGG - chr1_3:56327591-56327610 None:intergenic 50.0%
AGAAAGAAGGGAGAGGAAGG+AGG - chr1_3:56327592-56327611 None:intergenic 50.0%
TGGTAGGGAAGGGTGAAGAA+GGG - chr1_3:56327690-56327709 None:intergenic 50.0%
ATGGTAGGGAAGGGTGAAGA+AGG - chr1_3:56327691-56327710 None:intergenic 50.0%
GTGTAAGGGATGGTAGGGAA+GGG - chr1_3:56327700-56327719 None:intergenic 50.0%
AGGTGTGGATAGCGAGAGAA+GGG - chr1_3:56327724-56327743 None:intergenic 50.0%
! AGTGATGGGAGAGGAATGGA+GGG - chr1_3:56327761-56327780 None:intergenic 50.0%
! AAGTGATGGGAGAGGAATGG+AGG - chr1_3:56327762-56327781 None:intergenic 50.0%
! TGGAAGTGATGGGAGAGGAA+TGG - chr1_3:56327765-56327784 None:intergenic 50.0%
CTTGGGCCTTAGGGAAGAAA+TGG - chr1_3:56327801-56327820 None:intergenic 50.0%
ATCGGAGAGTAAAACGCCAC+TGG - chr1_3:56328112-56328131 None:intergenic 50.0%
! GGCGTTTTACTCTCCGATCA+AGG + chr1_3:56328114-56328133 Msa0127120:CDS 50.0%
CCCACAAACGAGGCAAACAT+AGG - chr1_3:56328351-56328370 None:intergenic 50.0%
CAAGTTTCTCCCCACAAACG+AGG - chr1_3:56328361-56328380 None:intergenic 50.0%
TGTCAGGGGGAATTCAACTC+TGG + chr1_3:56329453-56329472 Msa0127120:intron 50.0%
!! CGCTGTGAAAGGTATCCAGA+TGG + chr1_3:56329591-56329610 Msa0127120:CDS 50.0%
GAGACAACAGCGTCTTACAG+AGG + chr1_3:56329804-56329823 Msa0127120:CDS 50.0%
TCAGCTGATCGCCCTTTAAC+TGG + chr1_3:56329865-56329884 Msa0127120:CDS 50.0%
TCGCCCTTTAACTGGAAGTG+AGG + chr1_3:56329873-56329892 Msa0127120:CDS 50.0%
TAGTGTACTTACCCACCCAG+GGG + chr1_3:56329950-56329969 Msa0127120:intron 50.0%
AACATGTCATACCCCTGGGT+GGG - chr1_3:56329964-56329983 None:intergenic 50.0%
TGGGTACTTCCGAAGCTTCT+AGG + chr1_3:56330116-56330135 Msa0127120:intron 50.0%
TCGCAGGGATGGATAGAATG+AGG + chr1_3:56330556-56330575 Msa0127120:CDS 50.0%
AGACTATCGATGTGCCAAGC+AGG + chr1_3:56330647-56330666 Msa0127120:CDS 50.0%
TCGATGTGCCAAGCAGGATT+TGG + chr1_3:56330653-56330672 Msa0127120:CDS 50.0%
!! GTAACGTTTTCTGGCACTCC+TGG + chr1_3:56332156-56332175 Msa0127120:intron 50.0%
CTTGGTCAACTAGGAGTTGC+TGG + chr1_3:56332449-56332468 Msa0127120:CDS 50.0%
TTCTGCGCCTGATCTTGGTA+AGG - chr1_3:56332906-56332925 None:intergenic 50.0%
ACCAAGATCAGGCGCAGAAT+AGG + chr1_3:56332907-56332926 Msa0127120:CDS 50.0%
GCGCCTTCTTGCTTAAAGAG+AGG - chr1_3:56333094-56333113 None:intergenic 50.0%
GGAGAGGAAGGAGGGAGATA+TGG - chr1_3:56327583-56327602 None:intergenic 55.0%
TGAAGAAGGGAGTAGGAGGG+AGG - chr1_3:56327677-56327696 None:intergenic 55.0%
GGGTGAAGAAGGGAGTAGGA+GGG - chr1_3:56327680-56327699 None:intergenic 55.0%
AGGGTGAAGAAGGGAGTAGG+AGG - chr1_3:56327681-56327700 None:intergenic 55.0%
GGAAGGGTGAAGAAGGGAGT+AGG - chr1_3:56327684-56327703 None:intergenic 55.0%
GGTGTAAGGGATGGTAGGGA+AGG - chr1_3:56327701-56327720 None:intergenic 55.0%
! AGGGGGTGTAAGGGATGGTA+GGG - chr1_3:56327705-56327724 None:intergenic 55.0%
! AAGGGGGTGTAAGGGATGGT+AGG - chr1_3:56327706-56327725 None:intergenic 55.0%
! AGAGAAGGGGGTGTAAGGGA+TGG - chr1_3:56327710-56327729 None:intergenic 55.0%
! AGCGAGAGAAGGGGGTGTAA+GGG - chr1_3:56327714-56327733 None:intergenic 55.0%
! TAGCGAGAGAAGGGGGTGTA+AGG - chr1_3:56327715-56327734 None:intergenic 55.0%
GTGTGGATAGCGAGAGAAGG+GGG - chr1_3:56327722-56327741 None:intergenic 55.0%
GGTGTGGATAGCGAGAGAAG+GGG - chr1_3:56327723-56327742 None:intergenic 55.0%
GAGGTGTGGATAGCGAGAGA+AGG - chr1_3:56327725-56327744 None:intergenic 55.0%
! AATGGAGGGTGCGGCGAAAA+GGG - chr1_3:56327747-56327766 None:intergenic 55.0%
! GAGTGTTCTAGGCTGGGGTT+GGG - chr1_3:56327824-56327843 None:intergenic 55.0%
! AGAGTGTTCTAGGCTGGGGT+TGG - chr1_3:56327825-56327844 None:intergenic 55.0%
!! GGGAAGAGTGTTCTAGGCTG+GGG - chr1_3:56327829-56327848 None:intergenic 55.0%
!! GGGGAAGAGTGTTCTAGGCT+GGG - chr1_3:56327830-56327849 None:intergenic 55.0%
CAGCCTAGAACACTCTTCCC+CGG + chr1_3:56327829-56327848 Msa0127120:CDS 55.0%
! TTCAGGGCGTTTGTAACCGC+CGG - chr1_3:56327851-56327870 None:intergenic 55.0%
AACGCCACTGGTAACAGCAG+CGG - chr1_3:56328100-56328119 None:intergenic 55.0%
!! TGGTGGTGGTGGTGGTGATT+TGG + chr1_3:56328278-56328297 Msa0127120:CDS 55.0%
CAACATGTCATACCCCTGGG+TGG - chr1_3:56329965-56329984 None:intergenic 55.0%
AGAGCAGATCGAGCAGACAC+AGG - chr1_3:56330399-56330418 None:intergenic 55.0%
TAGATGGGTCGACGATCGCA+GGG + chr1_3:56330541-56330560 Msa0127120:CDS 55.0%
AGGGGATCAAGCTGGCTATC+AGG + chr1_3:56331411-56331430 Msa0127120:CDS 55.0%
!! AGTGACAGTAGTGGTGGTGG+TGG - chr1_3:56332380-56332399 None:intergenic 55.0%
CGAATTTCCCATCTCGGAGG+CGG + chr1_3:56332757-56332776 Msa0127120:CDS 55.0%
GAGGCGGCGTGTGATAGATA+AGG + chr1_3:56332773-56332792 Msa0127120:CDS 55.0%
GCCTATTCTGCGCCTGATCT+TGG - chr1_3:56332911-56332930 None:intergenic 55.0%
! GAATGGAGGGTGCGGCGAAA+AGG - chr1_3:56327748-56327767 None:intergenic 60.0%
TGGGAGAGGAATGGAGGGTG+CGG - chr1_3:56327756-56327775 None:intergenic 60.0%
TCTAGGCTGGGGTTGGGCTT+GGG - chr1_3:56327818-56327837 None:intergenic 60.0%
TTCTAGGCTGGGGTTGGGCT+TGG - chr1_3:56327819-56327838 None:intergenic 60.0%
!! CGGGGAAGAGTGTTCTAGGC+TGG - chr1_3:56327831-56327850 None:intergenic 60.0%
CCTAGAACACTCTTCCCCGG+CGG + chr1_3:56327832-56327851 Msa0127120:CDS 60.0%
! TCAGGGCGTTTGTAACCGCC+GGG - chr1_3:56327850-56327869 None:intergenic 60.0%
CTAGATGGGTCGACGATCGC+AGG + chr1_3:56330540-56330559 Msa0127120:CDS 60.0%
!! AGTAGTGGTGGTGGTGGTGG+TGG - chr1_3:56332374-56332393 None:intergenic 60.0%
!! GACAGTAGTGGTGGTGGTGG+TGG - chr1_3:56332377-56332396 None:intergenic 60.0%
GTGCGGCGAAAAGGGAGGTG+TGG - chr1_3:56327739-56327758 None:intergenic 65.0%
GGGGTTGGGCTTGGGCCTTA+GGG - chr1_3:56327810-56327829 None:intergenic 65.0%
TGGGGTTGGGCTTGGGCCTT+AGG - chr1_3:56327811-56327830 None:intergenic 65.0%
!! CCGCCGGGGAAGAGTGTTCT+AGG - chr1_3:56327835-56327854 None:intergenic 65.0%
! CAGGGCGTTTGTAACCGCCG+GGG - chr1_3:56327849-56327868 None:intergenic 65.0%
GCTGCCGCTGCTGTTACCAG+TGG + chr1_3:56328093-56328112 Msa0127120:CDS 65.0%
TGGGTCGACGATCGCAGGGA+TGG + chr1_3:56330545-56330564 Msa0127120:CDS 65.0%
!! AGTGGTGGTGGTGGTGGTGG+TGG - chr1_3:56332371-56332390 None:intergenic 65.0%
TCACACGCCGCCTCCGAGAT+GGG - chr1_3:56332767-56332786 None:intergenic 65.0%
ATCACACGCCGCCTCCGAGA+TGG - chr1_3:56332768-56332787 None:intergenic 65.0%
! GGAGGGTGCGGCGAAAAGGG+AGG - chr1_3:56327744-56327763 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr1_3:56332365-56332384 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56327555 56333326 56327555 ID=Msa0127120;Name=Msa0127120
chr1_3 mRNA 56327555 56333326 56327555 ID=Msa0127120-mRNA-1;Parent=Msa0127120;Name=Msa0127120-mRNA-1;_AED=0.16;_eAED=0.16;_QI=85|1|1|1|1|1|10|301|926
chr1_3 exon 56327555 56328698 56327555 ID=Msa0127120-mRNA-1:exon:17729;Parent=Msa0127120-mRNA-1
chr1_3 exon 56328820 56328888 56328820 ID=Msa0127120-mRNA-1:exon:17730;Parent=Msa0127120-mRNA-1
chr1_3 exon 56329459 56329653 56329459 ID=Msa0127120-mRNA-1:exon:17731;Parent=Msa0127120-mRNA-1
chr1_3 exon 56329763 56329894 56329763 ID=Msa0127120-mRNA-1:exon:17732;Parent=Msa0127120-mRNA-1
chr1_3 exon 56330003 56330089 56330003 ID=Msa0127120-mRNA-1:exon:17733;Parent=Msa0127120-mRNA-1
chr1_3 exon 56330324 56330767 56330324 ID=Msa0127120-mRNA-1:exon:17734;Parent=Msa0127120-mRNA-1
chr1_3 exon 56330860 56331024 56330860 ID=Msa0127120-mRNA-1:exon:17735;Parent=Msa0127120-mRNA-1
chr1_3 exon 56331265 56331495 56331265 ID=Msa0127120-mRNA-1:exon:17736;Parent=Msa0127120-mRNA-1
chr1_3 exon 56332437 56332552 56332437 ID=Msa0127120-mRNA-1:exon:17737;Parent=Msa0127120-mRNA-1
chr1_3 exon 56332743 56333326 56332743 ID=Msa0127120-mRNA-1:exon:17738;Parent=Msa0127120-mRNA-1
chr1_3 five_prime_UTR 56327555 56327639 56327555 ID=Msa0127120-mRNA-1:five_prime_utr;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56327640 56328698 56327640 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56328820 56328888 56328820 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56329459 56329653 56329459 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56329763 56329894 56329763 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56330003 56330089 56330003 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56330324 56330767 56330324 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56330860 56331024 56330860 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56331265 56331495 56331265 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56332437 56332552 56332437 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 CDS 56332743 56333025 56332743 ID=Msa0127120-mRNA-1:cds;Parent=Msa0127120-mRNA-1
chr1_3 three_prime_UTR 56333026 56333326 56333026 ID=Msa0127120-mRNA-1:three_prime_utr;Parent=Msa0127120-mRNA-1
Gene Sequence

>Msa0127120

ATGGTACCCTGTTCCATAACAACCCCTTCTTATTCCTCCCTCCTACTCCCTTCTTCACCCTTCCCTACCATCCCTTACACCCCCTTCTCTCGCTATCCACACCTCCCTTTTCGCCGCACCCTCCATTCCTCTCCCATCACTTCCAATAATGTTTCTCGCCATTTCTTCCCTAAGGCCCAAGCCCAACCCCAGCCTAGAACACTCTTCCCCGGCGGTTACAAACGCCCTGAACTCAAAGTCCCTACTCTCATTCTCCAACTCAACTCCGATCAGATTCTTACACGTGGCGAATCCGCACTAGACTTGATTGATAAAGCAGTTTCCAAATCGGTTGGAATTGTGATTCTAACTAGTAATGAACAAAGTGGTGGTAAACTCTACGAAGCTGCTTGTTTGTTGAAATCACTTATTCGTGATCGCGCTTATTTGTTAGTTGCTGAGCGTGTTGATATTGCTGCCGCTGCTGTTACCAGTGGCGTTTTACTCTCCGATCAAGGTCTTCCTACTGTTGTTGCTAGGAATACAATGTTAGGTTCCAATAGCGAATTGGTGGTTCTTCCATTGGTCGCTAGATTTGTACATACTGTAGATGCTGCTGTAAATGCATCCAAATCTGAAGGTGCTGATTTTCTTATTTATGGTGGTGGTGGTGGTGATTTGGAACTTTTAAATCAGGAAATTGGTAATGTAGTTGACAATGTGAAGATACCTATGTTTGCCTCGTTTGTGGGGAGAAACTTGTCATGCGATGAGGCTTCGAGTTTACTTGCTTCTGGTGCTAGTGGTTTTGTTACTAGTTTGGAAAGTTTTGGGTTGTTTGATGATGATTTGCTTCGTAAATTATTTGATGGTGGGTTTGCAAATGAGGAGAGAACACTGGATGATCGTCGTGATGAAATTGATGATGATAAATTAGTCAATGAGAGTAATGGTTTGCAGAGTATAACAGAGGTTGTGGGTGGATTTGTTAAACTGGAAGATAGGGAGAAACAGTTAATAGAAATGGAGAGGTCGGTGCTGAATGAAGCTATTGAAGTTATAAAGAAAGCTGCACCTCTGATGGAGGAAGTTTCGCTTCTTGATGATGCAGTTTCTCAGATTGACGAGCCGTTCTTATTGGTTATAGTGGGGGAATTCAACTCTGGCAAATCTACTGTGATTAATGCGCTTCTTGGAGAAAGATATCTCAAAGACGGGGTTGTTCCAACAACGAATGAGATCACATTTTTACGATATAATGACCTAGATATTGAAAAACAACGCTGTGAAAGGTATCCAGATGGTCAATATATTTGCTACCTTCCAGCTCCAATTCTTAGAGAAATGACAATTGTTGATACACCTGGAACTAATGTAATCCTTCAGAGACAACAGCGTCTTACAGAGGAATTTGTGCCTCGTGCAGACTTGCTTCTTTTTGTTATTTCAGCTGATCGCCCTTTAACTGGAAGTGAGGTTGCTTTTCTTCGTTATTCACAGCAATGGAAGAAGAAAGTGGTCTTTGTTTTGAACAAAGCTGACATTTATCAGAATAATCATGAGCTTGAGGAAGCAATGTCCTTCATTAAGGACAACGTAAAGAGATTGTTGAATACGGAAGATGTGATATTATATCCTGTGTCTGCTCGATCTGCTCTTGAAGCAAAACTTATGGCTACCTCTAGTTTCGGGAAACTCAACGAAGAATTGTTGTCAGTCTCTGGTTCTCAATATGGTCCCAATAGCTTTTACGAGCTTGAGAAATTTTTATATAGCTTTCTAGATGGGTCGACGATCGCAGGGATGGATAGAATGAGGCTTAAACTTGAAACACCTGTTGGAATTGCAGACAGATTGATTTCTGCATGTGAAACTCTTGTGACACAAGACTATCGATGTGCCAAGCAGGATTTGGCTGCAATAAACGATGTTGTCAACAGTGTAAATGATTTTGCATTGAATATGGAAAATGAGAGCCTTTCTTGGAGGAAACAAACTCTATCCATGATTGAATCCACTAAATCACGTGTTGTGGAGCTTGTAGAAGCTACAATGCAATTGTCAAATCTTGATATTGTTGTATCATATGTTTTCAAAGGAGAGAAACATGCGACACCTGCCACCTCAAGAATTCAGAATGACATAATTGATCCTTCTGTGTCATCTGTTCAGAAAATACTTGGAGATTATGAAAATTGGTTAAGCGCCAAAAATACCCAACAAGGGAGAATATACAAGGAATCTTTTGAGAAGCGATGGTCCTCATTGATTCATGAAAATAGTCAGAAGAATTCTGAGACATATGAGTTGCTAAAGAAAGGGGATCAAGCTGGCTATCAGGTGATTGAAAATTTCAGCAGCAGTGCAGTTTCAAAGTCATTTGAGCAAGAAGTTCGTGAGATGATTTTAGGGACTCTTGGTCAACTAGGAGTTGCTGGTTTTTCTGCTTCACTATTGACATCTGTACTGCAAACCACATTGGAAGATCTTCTTGCTCTTGGAATTTGTTCTGTTGGCGGGTATATAGCTATTTCGAATTTCCCATCTCGGAGGCGGCGTGTGATAGATAAGGTGAAAAGGAAAGCAGATACCTTGGCAAATGAACTTGAAGAAGCCATGAAGAGGGATTTGACTGAAGCAGTAGAAAATTTGGATACCTTTGTGAGAGTCATTGGCAAACCTTACCAAGATCAGGCGCAGAATAGGCTAAACAAGCTAGTTGAGACTCAAGAAGAAATATCAAATATTGAAAAGAAACTTAGAACACTACAAATTGATATCCAAAATCTTCATGTGTCCTGA
Protein sequence

>Msa0127120

MVPCSITTPSYSSLLLPSSPFPTIPYTPFSRYPHLPFRRTLHSSPITSNNVSRHFFPKAQAQPQPRTLFPGGYKRPELKVPTLILQLNSDQILTRGESALDLIDKAVSKSVGIVILTSNEQSGGKLYEAACLLKSLIRDRAYLLVAERVDIAAAAVTSGVLLSDQGLPTVVARNTMLGSNSELVVLPLVARFVHTVDAAVNASKSEGADFLIYGGGGGDLELLNQEIGNVVDNVKIPMFASFVGRNLSCDEASSLLASGASGFVTSLESFGLFDDDLLRKLFDGGFANEERTLDDRRDEIDDDKLVNESNGLQSITEVVGGFVKLEDREKQLIEMERSVLNEAIEVIKKAAPLMEEVSLLDDAVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKDGVVPTTNEITFLRYNDLDIEKQRCERYPDGQYICYLPAPILREMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTGSEVAFLRYSQQWKKKVVFVLNKADIYQNNHELEEAMSFIKDNVKRLLNTEDVILYPVSARSALEAKLMATSSFGKLNEELLSVSGSQYGPNSFYELEKFLYSFLDGSTIAGMDRMRLKLETPVGIADRLISACETLVTQDYRCAKQDLAAINDVVNSVNDFALNMENESLSWRKQTLSMIESTKSRVVELVEATMQLSNLDIVVSYVFKGEKHATPATSRIQNDIIDPSVSSVQKILGDYENWLSAKNTQQGRIYKESFEKRWSSLIHENSQKNSETYELLKKGDQAGYQVIENFSSSAVSKSFEQEVREMILGTLGQLGVAGFSASLLTSVLQTTLEDLLALGICSVGGYIAISNFPSRRRRVIDKVKRKADTLANELEEAMKRDLTEAVENLDTFVRVIGKPYQDQAQNRLNKLVETQEEISNIEKKLRTLQIDIQNLHVS*