AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0429800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429800 MtrunA17_Chr3g0133481 67.424 396 122 1 152 547 1 389 0.0 535
Msa0429800 MtrunA17_Chr3g0133481 70.588 102 30 0 1 102 16 117 2.92e-38 144
Msa0429800 MtrunA17_Chr3g0133511 61.481 405 138 5 152 545 1 398 6.40e-168 481
Msa0429800 MtrunA17_Chr3g0133511 64.000 100 36 0 1 100 16 115 2.30e-33 131
Msa0429800 MtrunA17_Chr3g0133391 62.687 402 131 6 152 547 1 389 3.72e-167 479
Msa0429800 MtrunA17_Chr3g0133391 45.985 137 70 2 1 137 15 147 2.29e-30 122
Msa0429800 MtrunA17_Chr8g0346621 61.440 389 135 5 163 547 20 397 6.31e-161 464
Msa0429800 MtrunA17_Chr8g0346621 45.503 189 79 3 1 189 27 191 1.63e-34 134
Msa0429800 MtrunA17_Chr4g0023671 60.100 401 142 5 152 547 1 388 9.15e-161 463
Msa0429800 MtrunA17_Chr4g0023671 48.175 137 67 2 1 137 16 148 5.38e-30 121
Msa0429800 MtrunA17_Chr7g0233731 59.102 401 152 3 148 543 7 400 8.75e-160 463
Msa0429800 MtrunA17_Chr7g0233731 56.250 112 47 1 1 110 26 137 6.32e-32 128
Msa0429800 MtrunA17_Chr7g0233731 64.516 62 21 1 487 547 399 460 1.98e-13 72.8
Msa0429800 MtrunA17_Chr7g0233701 61.750 400 141 3 153 547 4 396 1.88e-159 460
Msa0429800 MtrunA17_Chr7g0233701 58.182 110 44 1 1 108 18 127 5.50e-32 127
Msa0429800 MtrunA17_Chr3g0083861 59.901 404 143 5 148 545 49 439 2.43e-158 459
Msa0429800 MtrunA17_Chr3g0083861 53.333 135 59 2 1 135 68 198 1.32e-33 132
Msa0429800 MtrunA17_Chr3g0133411 54.608 434 169 7 138 547 9 438 8.26e-154 447
Msa0429800 MtrunA17_Chr3g0133411 61.616 99 38 0 1 99 45 143 8.46e-32 127
Msa0429800 MtrunA17_Chr3g0133431 58.706 402 144 8 152 546 20 406 4.23e-144 421
Msa0429800 MtrunA17_Chr3g0133431 56.122 98 38 2 1 97 39 132 2.69e-23 102
Msa0429800 MtrunA17_Chr2g0302581 54.386 399 159 6 155 545 3 386 2.15e-136 400
Msa0429800 MtrunA17_Chr2g0302581 55.556 99 39 2 1 99 15 108 9.67e-23 100
Msa0429800 MtrunA17_Chr3g0133531 67.114 298 97 1 249 545 7 304 3.63e-136 397
Msa0429800 MtrunA17_Chr2g0302611 54.386 399 159 6 155 545 3 386 3.69e-136 400
Msa0429800 MtrunA17_Chr2g0302611 55.556 99 39 2 1 99 15 108 4.10e-23 101
Msa0429800 MtrunA17_Chr3g0096411 53.202 406 152 7 156 546 9 391 3.79e-135 397
Msa0429800 MtrunA17_Chr3g0096411 38.830 188 100 4 1 188 37 209 3.03e-29 119
Msa0429800 MtrunA17_Chr3g0134681 55.236 382 132 6 173 546 67 417 5.02e-133 393
Msa0429800 MtrunA17_Chr3g0134681 48.889 135 67 1 1 135 68 200 3.62e-33 131
Msa0429800 MtrunA17_Chr3g0083001 53.731 402 143 7 148 545 9 371 4.01e-132 389
Msa0429800 MtrunA17_Chr3g0083001 46.715 137 69 2 1 137 26 158 8.12e-32 126
Msa0429800 MtrunA17_Chr7g0233691 65.799 269 87 2 284 547 10 278 9.78e-118 349
Msa0429800 MtrunA17_Chr3g0133371 65.234 256 85 2 294 547 35 288 1.33e-114 341
Msa0429800 MtrunA17_Chr8g0358841 64.286 266 90 2 285 545 2 267 2.45e-113 337
Msa0429800 MtrunA17_Chr7g0233721 66.031 262 84 2 291 547 17 278 5.43e-113 337
Msa0429800 MtrunA17_Chr7g0233751 54.693 309 115 4 156 457 7 297 1.21e-103 314
Msa0429800 MtrunA17_Chr7g0233751 58.929 112 44 1 1 110 26 137 2.72e-34 131
Msa0429800 MtrunA17_Chr4g0046911 61.154 260 92 3 291 546 5 259 1.60e-101 306
Msa0429800 MtrunA17_Chr3g0083041 64.062 256 87 5 293 545 44 297 4.83e-100 304
Msa0429800 MtrunA17_Chr8g0346661 66.667 213 69 1 173 385 15 225 2.36e-91 279
Msa0429800 MtrunA17_Chr8g0346661 53.333 135 59 2 1 135 16 146 2.22e-36 135
Msa0429800 MtrunA17_Chr3g0083871 55.939 261 90 3 290 545 9 249 8.73e-90 276
Msa0429800 MtrunA17_Chr3g0141031 60.930 215 76 2 338 547 9 220 5.15e-78 244
Msa0429800 MtrunA17_Chr3g0143151 39.646 396 209 12 171 547 26 410 8.96e-73 238
Msa0429800 MtrunA17_Chr3g0143151 32.117 137 84 3 7 137 30 163 3.65e-13 71.6
Msa0429800 MtrunA17_Chr2g0302701 56.522 207 79 3 347 545 9 212 1.54e-68 220
Msa0429800 MtrunA17_Chr3g0132731 68.243 148 47 0 288 435 11 158 4.22e-65 209
Msa0429800 MtrunA17_Chr3g0133091 60.345 174 63 2 331 498 1 174 9.95e-65 209
Msa0429800 MtrunA17_Chr3g0133401 56.522 184 44 2 364 547 1 148 2.65e-60 196
Msa0429800 MtrunA17_Chr3g0133501 65.190 158 48 2 396 546 1 158 4.96e-59 193
Msa0429800 MtrunA17_Chr3g0133471 58.788 165 61 2 364 521 1 165 1.08e-53 179
Msa0429800 MtrunA17_Chr8g0346651 57.051 156 58 3 396 547 1 151 1.52e-49 167
Msa0429800 MtrunA17_Chr4g0046951 66.667 114 38 0 291 404 5 118 3.87e-49 166
Msa0429800 MtrunA17_Chr3g0134651 56.849 146 59 1 355 496 3 148 9.52e-49 166
Msa0429800 MtrunA17_Chr7g0233711 55.319 141 56 1 153 293 4 137 3.81e-44 154
Msa0429800 MtrunA17_Chr7g0233711 60.000 110 42 1 1 108 18 127 2.68e-36 132
Msa0429800 MtrunA17_Chr7g0233681 52.414 145 59 2 150 291 4 141 2.45e-42 148
Msa0429800 MtrunA17_Chr7g0233681 59.615 104 42 0 1 104 24 127 4.11e-36 131
Msa0429800 MtrunA17_Chr3g0133351 58.696 138 47 3 152 289 1 128 4.96e-41 145
Msa0429800 MtrunA17_Chr3g0133351 63.000 100 35 1 1 100 15 112 4.83e-33 124
Msa0429800 MtrunA17_Chr3g0134661 65.385 104 36 0 174 277 1 104 3.07e-40 141
Msa0429800 MtrunA17_Chr3g0134661 66.667 99 33 0 1 99 1 99 8.52e-39 137
Msa0429800 MtrunA17_Chr8g0358851 56.522 138 53 1 152 289 1 131 3.92e-40 142
Msa0429800 MtrunA17_Chr8g0358851 62.626 99 37 0 1 99 16 114 7.33e-32 119
Msa0429800 MtrunA17_Chr3g0133521 64.583 96 34 0 291 386 2 97 8.97e-38 134
Msa0429800 MtrunA17_Chr4g0046941 58.120 117 47 1 173 289 16 130 1.36e-35 130
Msa0429800 MtrunA17_Chr4g0046941 56.364 110 44 2 1 108 17 124 2.86e-30 115
Msa0429800 MtrunA17_Chr4g0046961 53.719 121 47 2 425 541 2 117 3.86e-28 109
Msa0429800 MtrunA17_Chr3g0141021 53.521 71 33 0 274 344 1 71 1.27e-21 89.4
Msa0429800 MtrunA17_Chr3g0132691 67.213 61 20 0 364 424 1 61 1.85e-21 88.2
Msa0429800 MtrunA17_Chr3g0133491 86.957 46 6 0 502 547 1 46 6.85e-21 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429800 AT1G47710.1 47.015 402 193 7 152 545 1 390 6.95e-120 359
Msa0429800 AT1G47710.1 47.475 99 51 1 1 99 15 112 1.79e-20 94.0
Msa0429800 AT1G47710.2 46.898 403 194 7 151 545 27 417 1.46e-119 359
Msa0429800 AT1G47710.2 47.475 99 51 1 1 99 42 139 3.37e-20 93.6
Msa0429800 AT3G45220.1 45.652 368 180 4 190 544 30 390 1.34e-105 322
Msa0429800 AT3G45220.1 40.964 83 49 0 17 99 30 112 2.90e-11 65.9
Msa0429800 AT2G26390.1 45.902 366 177 6 190 544 31 386 2.27e-103 317
Msa0429800 AT2G26390.1 43.373 83 43 1 17 99 31 109 3.12e-12 68.9
Msa0429800 AT2G25240.1 46.832 363 175 7 190 544 30 382 2.47e-101 311
Msa0429800 AT1G64030.1 42.640 394 197 6 155 544 3 371 3.79e-97 300
Msa0429800 AT1G64030.1 39.000 100 59 2 1 99 15 113 1.35e-14 76.3
Msa0429800 AT1G62170.1 42.935 368 180 5 187 546 88 433 4.78e-96 299
Msa0429800 AT1G62170.1 40.698 86 47 1 14 95 88 173 1.85e-11 66.6
Msa0429800 AT2G14540.1 44.598 361 179 4 187 544 55 397 5.83e-94 293
Msa0429800 AT2G14540.1 36.782 87 54 1 14 99 55 141 4.97e-11 65.1
Msa0429800 AT2G35580.1 42.857 357 180 7 194 544 33 371 2.17e-90 283
Msa0429800 AT2G35580.1 40.741 81 45 2 21 99 33 112 3.47e-11 65.5
Msa0429800 AT1G62170.2 39.651 401 179 6 187 546 88 466 4.71e-90 285
Msa0429800 AT1G62170.2 40.698 86 47 1 14 95 88 173 2.15e-11 66.6
Msa0429800 AT1G64010.2 49.537 216 86 5 331 544 1 195 7.11e-62 202
Msa0429800 AT1G64010.1 48.756 201 80 5 346 544 2 181 3.94e-54 181
Msa0429800 AT1G63280.1 53.390 118 51 2 287 402 5 120 1.43e-33 124
Msa0429800 AT1G62160.1 40.299 201 91 5 353 546 42 220 4.42e-33 126
Msa0429800 AT1G51330.1 49.107 112 54 2 288 396 29 140 4.65e-27 108
Msa0429800 AT1G64020.1 35.398 113 70 3 169 280 10 120 1.39e-12 65.1
Msa0429800 AT1G64020.1 38.384 99 58 3 1 98 15 111 1.01e-11 62.8

Find 135 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTTGCATGAAAGATTT+AGG 0.134018 3_2:+81287800 Msa0429800:CDS
CAACCCAATCAGTGAATTTA+TGG 0.159817 3_2:+81289269 Msa0429800:CDS
TATGAGGAAGCTTGTCTTCT+AGG 0.205127 3_2:-81289648 None:intergenic
CTTGTCTTTATATTCTTCTT+TGG 0.244807 3_2:-81287173 None:intergenic
CTTGTCTTTATATTCTTCTT+TGG 0.244807 3_2:-81288645 None:intergenic
TGTCTTCTGCCAACGCTGTT+TGG 0.258315 3_2:+81287383 Msa0429800:CDS
TGTCTTCTGCCAACGCTGTT+TGG 0.258315 3_2:+81288855 Msa0429800:CDS
GATGTGGAAGAAACAATTTC+AGG 0.285334 3_2:+81287782 Msa0429800:CDS
CTGCCGCATTCACGGGAATT+AGG 0.286210 3_2:+81289869 Msa0429800:CDS
GTCTTCTGCCAACGCTGTTT+GGG 0.287560 3_2:+81287384 Msa0429800:CDS
GTCTTCTGCCAACGCTGTTT+GGG 0.287560 3_2:+81288856 Msa0429800:CDS
CCTCTTCATGCTAGTCATAA+AGG 0.293948 3_2:-81289473 None:intergenic
AACTGTTGCTACTCATTATA+TGG 0.315904 3_2:+81288916 Msa0429800:CDS
GATGCAAAAGATGGGTTGTT+AGG 0.331478 3_2:+81289592 Msa0429800:CDS
CGGAAGCGACGTGAGAAGAT+AGG 0.331599 3_2:-81287321 None:intergenic
CGGAAGCGACGTGAGAAGAT+AGG 0.331599 3_2:-81288793 None:intergenic
AGATGGAGATGTTTATCTTA+TGG 0.339347 3_2:+81287853 Msa0429800:CDS
TCATCTTCACCTTGCTTGTA+AGG 0.348281 3_2:-81289538 None:intergenic
TTGATAAGAGAAGATTTATC+TGG 0.365061 3_2:+81289964 Msa0429800:CDS
CAGGTTGCATGAAAGATTTA+GGG 0.366451 3_2:+81287801 Msa0429800:CDS
AATCAGCTTCTGTCCTTTCT+CGG 0.370054 3_2:+81287271 Msa0429800:CDS
AATCAGCTTCTGTCCTTTCT+CGG 0.370054 3_2:+81288743 Msa0429800:CDS
CGAGGAGACTGAGCGCAGTT+TGG 0.373483 3_2:-81287222 None:intergenic
TCTGATGTGTTGAAGGAGTT+AGG 0.381460 3_2:+81289733 Msa0429800:CDS
AGCCCATAAATTCACTGATT+GGG 0.386856 3_2:-81289272 None:intergenic
AATAGCAACAGTTTCTTTGA+AGG 0.390569 3_2:-81287434 None:intergenic
ATTCTTCTGGTTTGAATGGT+TGG 0.391216 3_2:-81288533 None:intergenic
AGAATAAATATTGGTGTAGT+TGG 0.391441 3_2:+81290231 Msa0429800:three_prime_UTR
CGCTAAAGCTGCCGCATTCA+CGG 0.392548 3_2:+81289861 Msa0429800:CDS
CGAGGAGACTGAGAGCAGTT+TGG 0.395888 3_2:-81288694 None:intergenic
AGTACTGTAGAAACACTAAT+TGG 0.400387 3_2:-81289805 None:intergenic
TCTGGTACAATACTCTTTGT+TGG 0.400415 3_2:+81289982 Msa0429800:CDS
CAGCCCATAAATTCACTGAT+TGG 0.401585 3_2:-81289273 None:intergenic
GGAGCAATCGTTTGATGCTT+CGG 0.404813 3_2:+81289399 Msa0429800:CDS
CTGGTACAATACTCTTTGTT+GGG 0.404814 3_2:+81289983 Msa0429800:CDS
TTTATAACCAAACTAGCTTA+AGG 0.408868 3_2:-81290350 None:intergenic
TGAAATTTCTGATGTGTTGA+AGG 0.418942 3_2:+81289726 Msa0429800:CDS
AACCATTCAAACCAGAAGAA+TGG 0.422288 3_2:+81288535 Msa0429800:CDS
ATTCTTCTTTGGAGAACAAA+TGG 0.423124 3_2:-81287162 None:intergenic
ATTCTTCTTTGGAGAACAAA+TGG 0.423124 3_2:-81288634 None:intergenic
ATCCATTCTTCTGGTTTGAA+TGG 0.424273 3_2:-81288537 None:intergenic
CAAGTGCATAATCCTCTTGC+TGG 0.429353 3_2:+81290006 Msa0429800:CDS
CTCTTCATGCTAGTCATAAA+GGG 0.432869 3_2:-81289472 None:intergenic
TCATTGCAATTTGCAACAGT+TGG 0.435279 3_2:+81290197 Msa0429800:three_prime_UTR
TTCACGGGAATTAGGATGTA+TGG 0.438848 3_2:+81289877 Msa0429800:CDS
TTTCTTCCAGATGCAAAAGA+TGG 0.444703 3_2:+81289583 Msa0429800:CDS
AGTAGCAACAGTTTCTTTGA+AGG 0.447416 3_2:-81288906 None:intergenic
TGGTGAAGAAATGGTTGGTA+AGG 0.449170 3_2:-81288583 None:intergenic
AGTGAATTTATGGGCTGAAA+AGG 0.450449 3_2:+81289279 Msa0429800:CDS
ACGAACGTAATCCATTCTTC+TGG 0.456785 3_2:-81288546 None:intergenic
AACCCAATCAGTGAATTTAT+GGG 0.457167 3_2:+81289270 Msa0429800:CDS
GGAAGCGACGTGAGAAGATA+GGG 0.462599 3_2:-81287320 None:intergenic
GGAAGCGACGTGAGAAGATA+GGG 0.462599 3_2:-81288792 None:intergenic
GGAGTGTGTGTTTGTGAAGA+TGG 0.465909 3_2:+81287836 Msa0429800:CDS
CTCCTCGCTGTTGGTTCTGA+GGG 0.470422 3_2:+81287238 Msa0429800:CDS
CTCCTCGCTGTTGGTTCTGA+GGG 0.470422 3_2:+81288710 Msa0429800:CDS
TCAAAAGAAATATTGAATCT+TGG 0.470594 3_2:-81289700 None:intergenic
TGAAGGAAGGGTAAACAGAA+AGG 0.471470 3_2:-81287417 None:intergenic
TGAAGGAAGGGTAAACAGAA+AGG 0.471470 3_2:-81288889 None:intergenic
TGGGCTGAAAAGGAGACAAA+AGG 0.472940 3_2:+81289289 Msa0429800:CDS
CTAATTGATGTGCTACCCAT+TGG 0.473798 3_2:-81290059 None:intergenic
GACAAGCATGGACCGCCGGC+AGG 0.474957 3_2:-81287364 None:intergenic
GACAAGCATGGACCGCCGGC+AGG 0.474957 3_2:-81288836 None:intergenic
GTCAAACCTCCAAAAGAGAA+AGG 0.475976 3_2:-81289766 None:intergenic
CAACAGTTTCTTTGAAGGAA+GGG 0.487406 3_2:-81287429 None:intergenic
TCTCCTCGCTGTTGGTTCTG+AGG 0.490976 3_2:+81287237 Msa0429800:CDS
TCTCCTCGCTGTTGGTTCTG+AGG 0.490976 3_2:+81288709 Msa0429800:CDS
GGAATCTCAGTTTCAATGCT+CGG 0.492213 3_2:-81288512 None:intergenic
GAAGGAAGGGTAAACAGAAA+GGG 0.492254 3_2:-81287416 None:intergenic
GAAGGAAGGGTAAACAGAAA+GGG 0.492254 3_2:-81288888 None:intergenic
CAACAGTTTCTTTGAAGGAA+GGG 0.497373 3_2:-81288901 None:intergenic
CAAGCAAGAATTAATCCAAT+GGG 0.499117 3_2:+81290044 Msa0429800:three_prime_UTR
CTCAAAGACGCTGCTCCTGC+CGG 0.500555 3_2:+81287349 Msa0429800:CDS
CTCAAAGACGCTGCTCCTGC+CGG 0.500555 3_2:+81288821 Msa0429800:CDS
GCAACAGTTTCTTTGAAGGA+AGG 0.503967 3_2:-81287430 None:intergenic
TTCTTTGGAGAACAAATGGT+TGG 0.505452 3_2:-81287158 None:intergenic
TTCTTTGGAGAACAAATGGT+TGG 0.505452 3_2:-81288630 None:intergenic
GCGCTCAGTCTCCTCGCTGT+TGG 0.506186 3_2:+81287229 Msa0429800:CDS
GCTCTCAGTCTCCTCGCTGT+TGG 0.509513 3_2:+81288701 Msa0429800:CDS
GCTAAAGCTGCCGCATTCAC+GGG 0.511822 3_2:+81289862 Msa0429800:CDS
GCAACAGTTTCTTTGAAGGA+AGG 0.513025 3_2:-81288902 None:intergenic
ATAGTGATAAGAATAAATAT+TGG 0.515083 3_2:+81290222 Msa0429800:three_prime_UTR
ACAAATGCATTATACTTCAA+AGG 0.517977 3_2:+81289370 Msa0429800:CDS
GATTTAGGGGAGAAGAAGAA+AGG 0.520537 3_2:+81287815 Msa0429800:CDS
TTCTTCCAGATGCAAAAGAT+GGG 0.522138 3_2:+81289584 Msa0429800:CDS
TGGTCAGCTACAAAGTCTAT+CGG 0.526901 3_2:-81289928 None:intergenic
GGGCTGAAAAGGAGACAAAA+GGG 0.540477 3_2:+81289290 Msa0429800:CDS
AGGGCGTGTGGATATAACTT+TGG 0.542693 3_2:+81290304 Msa0429800:three_prime_UTR
AGAAGACAAGCATGGACCGC+CGG 0.545801 3_2:-81287368 None:intergenic
AGAAGACAAGCATGGACCGC+CGG 0.545801 3_2:-81288840 None:intergenic
TCAAGCAAGAATTAATCCAA+TGG 0.546162 3_2:+81290043 Msa0429800:three_prime_UTR
AGCGCAGTTTGGAGCGACAA+TGG 0.549289 3_2:-81287211 None:intergenic
GGTCAGCTACAAAGTCTATC+GGG 0.550869 3_2:-81289927 None:intergenic
CATTATACTTCAAAGGAGCA+TGG 0.562007 3_2:+81289377 Msa0429800:CDS
CTTAGTCTTCCTTACAAGCA+AGG 0.563134 3_2:+81289529 Msa0429800:CDS
GTTAGGTTTGATTGAGAAAG+CGG 0.567281 3_2:+81289609 Msa0429800:CDS
GGAGAACAAATGGTTGGCGA+TGG 0.571262 3_2:-81287152 None:intergenic
GGAGAACAAATGGTTGGCGA+TGG 0.571262 3_2:-81288624 None:intergenic
CCTTTATGACTAGCATGAAG+AGG 0.571406 3_2:+81289473 Msa0429800:CDS
AGAGCAGTTTGGAGCGACAA+TGG 0.576794 3_2:-81288683 None:intergenic
AGTTAAGATCATCCAGCAAG+AGG 0.580534 3_2:-81290018 None:intergenic
GATGGACTTTGATCCGAGAA+AGG 0.581696 3_2:-81287284 None:intergenic
GATGGACTTTGATCCGAGAA+AGG 0.581696 3_2:-81288756 None:intergenic
TATCTTATGGAACAGACGAA+AGG 0.588747 3_2:+81287866 Msa0429800:CDS
CAAGCTTCCTCATACAAAAG+TGG 0.592026 3_2:+81289657 Msa0429800:CDS
GCTACAAAGTCTATCGGGAT+CGG 0.596547 3_2:-81289922 None:intergenic
TCTCAATGGCACCTCAGTCA+AGG 0.599345 3_2:+81289447 Msa0429800:CDS
ATTATACTTCAAAGGAGCAT+GGG 0.601138 3_2:+81289378 Msa0429800:CDS
TAGGGAGTTGAGATGGCCGA+TGG 0.601672 3_2:-81287302 None:intergenic
TAGGGAGTTGAGATGGCCGA+TGG 0.601672 3_2:-81288774 None:intergenic
CTTGCTTGTAAGGAAGACTA+AGG 0.608424 3_2:-81289528 None:intergenic
CATCCTAATTCCCGTGAATG+CGG 0.615111 3_2:-81289872 None:intergenic
GAGAAGATAGGGAGTTGAGA+TGG 0.618975 3_2:-81287309 None:intergenic
GAGAAGATAGGGAGTTGAGA+TGG 0.618975 3_2:-81288781 None:intergenic
AGGTTGCATGAAAGATTTAG+GGG 0.622291 3_2:+81287802 Msa0429800:CDS
AAAGACGCTGCTCCTGCCGG+CGG 0.624527 3_2:+81287352 Msa0429800:CDS
AAAGACGCTGCTCCTGCCGG+CGG 0.624527 3_2:+81288824 Msa0429800:CDS
GAAATCAAGTGATTTGAGAG+TGG 0.625530 3_2:-81288939 None:intergenic
CCTCATACAAAAGTGGTGGT+AGG 0.629641 3_2:+81289664 Msa0429800:CDS
TGTGTTGAAGGAGTTAGGAG+TGG 0.642269 3_2:+81289738 Msa0429800:CDS
CTGTAGATAAAGAGGGCGTG+TGG 0.643460 3_2:+81290292 Msa0429800:three_prime_UTR
TTTCTCGGATCAAAGTCCAT+CGG 0.660434 3_2:+81287286 Msa0429800:CDS
TTTCTCGGATCAAAGTCCAT+CGG 0.660434 3_2:+81288758 Msa0429800:CDS
GTTAAGCTATTAATCGACCC+AGG 0.661094 3_2:-81289334 None:intergenic
AGCAGCGTCTTTGAGAACAG+CGG 0.665031 3_2:-81287341 None:intergenic
AGCAGCGTCTTTGAGAACAG+CGG 0.665031 3_2:-81288813 None:intergenic
TGACTGAGGTGCCATTGAGA+AGG 0.673594 3_2:-81289444 None:intergenic
GCTTCCTCATACAAAAGTGG+TGG 0.680566 3_2:+81289660 Msa0429800:CDS
ATCATGAGTCCAGAAAGATG+TGG 0.691702 3_2:+81287766 Msa0429800:intron
GCGTTGGCAGAAGACAAGCA+TGG 0.713189 3_2:-81287376 None:intergenic
GCGTTGGCAGAAGACAAGCA+TGG 0.713189 3_2:-81288848 None:intergenic
CATAAAGGGAACCTTGACTG+AGG 0.721556 3_2:-81289458 None:intergenic
GACCCTCAGAACCAACAGCG+AGG 0.731995 3_2:-81287240 None:intergenic
GACCCTCAGAACCAACAGCG+AGG 0.731995 3_2:-81288712 None:intergenic
AAGCTATTAATCGACCCAGG+TGG 0.746620 3_2:-81289331 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAGTTTTTTTTTTTAGA+GGG + chr3_2:81287513-81287532 Msa0429800:intron 10.0%
!! ATATATGTAGTAATTATATA+AGG + chr3_2:81288155-81288174 Msa0429800:intron 10.0%
!!! ATAAATTGCAATTTTTTTTT+GGG - chr3_2:81288427-81288446 None:intergenic 10.0%
!!! AATAAATTGCAATTTTTTTT+TGG - chr3_2:81288428-81288447 None:intergenic 10.0%
!!! GTATTAGTTTTTTTTTTTAG+AGG + chr3_2:81287512-81287531 Msa0429800:intron 15.0%
!!! ATTGTTTAGAATAGAAAATA+AGG - chr3_2:81289050-81289069 None:intergenic 15.0%
!!! TATATTTGATATTGTTTTGA+AGG + chr3_2:81289237-81289256 Msa0429800:intron 15.0%
!! ATAGTGATAAGAATAAATAT+TGG + chr3_2:81290222-81290241 Msa0429800:three_prime_UTR 15.0%
!! GAAAAGTTGACATATTTATA+GGG + chr3_2:81287544-81287563 Msa0429800:intron 20.0%
!! TAATTAATTAGCATTCAGAA+TGG - chr3_2:81288010-81288029 None:intergenic 20.0%
!!! TTTTGGGTTAAATATGTTTT+TGG - chr3_2:81288411-81288430 None:intergenic 20.0%
!! TTAATCTACTAATCTAACAA+GGG - chr3_2:81289021-81289040 None:intergenic 20.0%
!! TTTAATCTACTAATCTAACA+AGG - chr3_2:81289022-81289041 None:intergenic 20.0%
!!! TATTTTGTTGTTAAATTGCT+TGG - chr3_2:81289128-81289147 None:intergenic 20.0%
!! TCAAAAGAAATATTGAATCT+TGG - chr3_2:81289703-81289722 None:intergenic 20.0%
! CTTGTCTTTATATTCTTCTT+TGG - chr3_2:81287176-81287195 None:intergenic 25.0%
!! AACTGTTGCTATTCATTATA+TGG + chr3_2:81287444-81287463 Msa0429800:intron 25.0%
! ATCACTTGATTTCATTAACA+AGG + chr3_2:81287477-81287496 Msa0429800:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr3_2:81287543-81287562 Msa0429800:intron 25.0%
!!! ATGATTTTGAAATTCGAATC+TGG - chr3_2:81287751-81287770 None:intergenic 25.0%
!!! AGAGTAGTAATTGTTTTTGA+AGG - chr3_2:81288045-81288064 None:intergenic 25.0%
!! TCAGATTTTGAATGAATACA+AGG + chr3_2:81288179-81288198 Msa0429800:intron 25.0%
! GTACGCTCTAATATATTATT+CGG - chr3_2:81288265-81288284 None:intergenic 25.0%
!!! TTTCTTTTTTGGTGAAGAAA+TGG - chr3_2:81288595-81288614 None:intergenic 25.0%
!! GGTCATAGATTTTTCTTTTT+TGG - chr3_2:81288606-81288625 None:intergenic 25.0%
! CTTGTCTTTATATTCTTCTT+TGG - chr3_2:81287176-81287195 None:intergenic 25.0%
! ACAAATGCATTATACTTCAA+AGG + chr3_2:81289370-81289389 Msa0429800:CDS 25.0%
! TTATCAAAAACAAGAAAGGA+TGG - chr3_2:81289951-81289970 None:intergenic 25.0%
! TCTCTTATCAAAAACAAGAA+AGG - chr3_2:81289955-81289974 None:intergenic 25.0%
! TTGATAAGAGAAGATTTATC+TGG + chr3_2:81289964-81289983 Msa0429800:CDS 25.0%
! AGAATAAATATTGGTGTAGT+TGG + chr3_2:81290231-81290250 Msa0429800:three_prime_UTR 25.0%
!!! AGTTTTGATGTCTTATTGTA+TGG + chr3_2:81290327-81290346 Msa0429800:three_prime_UTR 25.0%
! ATTCTTCTTTGGAGAACAAA+TGG - chr3_2:81287165-81287184 None:intergenic 30.0%
AATAGCAACAGTTTCTTTGA+AGG - chr3_2:81287437-81287456 None:intergenic 30.0%
! AATTCTGTGACTATGGTTTT+TGG - chr3_2:81287571-81287590 None:intergenic 30.0%
TGAAATTCGAATCTGGAAAA+GGG - chr3_2:81287744-81287763 None:intergenic 30.0%
TTGAAATTCGAATCTGGAAA+AGG - chr3_2:81287745-81287764 None:intergenic 30.0%
AGATGGAGATGTTTATCTTA+TGG + chr3_2:81287853-81287872 Msa0429800:CDS 30.0%
! TCCTTTTTCTTCTTCTTTCT+CGG + chr3_2:81287908-81287927 Msa0429800:intron 30.0%
TCTTTCTCGGTAAAAACAAT+AGG + chr3_2:81287921-81287940 Msa0429800:intron 30.0%
TACATCACTCTCAAAGAATT+GGG - chr3_2:81288332-81288351 None:intergenic 30.0%
ATACATCACTCTCAAAGAAT+TGG - chr3_2:81288333-81288352 None:intergenic 30.0%
CTAATCAAGACCTAGAATAT+TGG - chr3_2:81288473-81288492 None:intergenic 30.0%
!!! TTTTTTGGTGAAGAAATGGT+TGG - chr3_2:81288591-81288610 None:intergenic 30.0%
! ATTCTTCTTTGGAGAACAAA+TGG - chr3_2:81287165-81287184 None:intergenic 30.0%
AACTGTTGCTACTCATTATA+TGG + chr3_2:81288916-81288935 Msa0429800:CDS 30.0%
AACCCAATCAGTGAATTTAT+GGG + chr3_2:81289270-81289289 Msa0429800:CDS 30.0%
! ATTATACTTCAAAGGAGCAT+GGG + chr3_2:81289378-81289397 Msa0429800:CDS 30.0%
TGAAATTTCTGATGTGTTGA+AGG + chr3_2:81289726-81289745 Msa0429800:CDS 30.0%
AGTACTGTAGAAACACTAAT+TGG - chr3_2:81289808-81289827 None:intergenic 30.0%
TCAAGCAAGAATTAATCCAA+TGG + chr3_2:81290043-81290062 Msa0429800:three_prime_UTR 30.0%
CAAGCAAGAATTAATCCAAT+GGG + chr3_2:81290044-81290063 Msa0429800:three_prime_UTR 30.0%
!! GTTTTGCTTCATGTTTTGAA+CGG + chr3_2:81290099-81290118 Msa0429800:three_prime_UTR 30.0%
! TTCTTTGGAGAACAAATGGT+TGG - chr3_2:81287161-81287180 None:intergenic 35.0%
! CAACAGTTTCTTTGAAGGAA+GGG - chr3_2:81287432-81287451 None:intergenic 35.0%
GAAATCAAGTGATTTGAGAG+TGG - chr3_2:81287470-81287489 None:intergenic 35.0%
AATGACGAATTCTGTGACTA+TGG - chr3_2:81287578-81287597 None:intergenic 35.0%
!! AACACGAATTTTGAAGAACC+GGG - chr3_2:81287656-81287675 None:intergenic 35.0%
!! CAACACGAATTTTGAAGAAC+CGG - chr3_2:81287657-81287676 None:intergenic 35.0%
! AGAAATCGGGACATTTTTCA+CGG - chr3_2:81287721-81287740 None:intergenic 35.0%
AATCTGGAAAAGGGAGAAAT+CGG - chr3_2:81287735-81287754 None:intergenic 35.0%
! TTGTTTCTTCCACATCTTTC+TGG - chr3_2:81287778-81287797 None:intergenic 35.0%
GATGTGGAAGAAACAATTTC+AGG + chr3_2:81287782-81287801 Msa0429800:CDS 35.0%
! TCAGGTTGCATGAAAGATTT+AGG + chr3_2:81287800-81287819 Msa0429800:CDS 35.0%
CAGGTTGCATGAAAGATTTA+GGG + chr3_2:81287801-81287820 Msa0429800:CDS 35.0%
AGGTTGCATGAAAGATTTAG+GGG + chr3_2:81287802-81287821 Msa0429800:CDS 35.0%
TATCTTATGGAACAGACGAA+AGG + chr3_2:81287866-81287885 Msa0429800:CDS 35.0%
ACCGAGAAAGAAGAAGAAAA+AGG - chr3_2:81287912-81287931 None:intergenic 35.0%
ACATAGTCGGTACGTTAATT+AGG - chr3_2:81288294-81288313 None:intergenic 35.0%
AAAGAATTGGGTTCGTTAAG+GGG - chr3_2:81288320-81288339 None:intergenic 35.0%
CAAAGAATTGGGTTCGTTAA+GGG - chr3_2:81288321-81288340 None:intergenic 35.0%
TCAAAGAATTGGGTTCGTTA+AGG - chr3_2:81288322-81288341 None:intergenic 35.0%
CCTAGAATATTGGACTTACT+TGG - chr3_2:81288463-81288482 None:intergenic 35.0%
CCAAGTAAGTCCAATATTCT+AGG + chr3_2:81288460-81288479 Msa0429800:intron 35.0%
!! ATTCTTCTGGTTTGAATGGT+TGG - chr3_2:81288536-81288555 None:intergenic 35.0%
AACCATTCAAACCAGAAGAA+TGG + chr3_2:81288535-81288554 Msa0429800:CDS 35.0%
!! ATCCATTCTTCTGGTTTGAA+TGG - chr3_2:81288540-81288559 None:intergenic 35.0%
! TTCTTTGGAGAACAAATGGT+TGG - chr3_2:81287161-81287180 None:intergenic 35.0%
! CAACAGTTTCTTTGAAGGAA+GGG - chr3_2:81287432-81287451 None:intergenic 35.0%
AGTAGCAACAGTTTCTTTGA+AGG - chr3_2:81288909-81288928 None:intergenic 35.0%
GAAATCAAGTGATTTGAGAG+TGG - chr3_2:81287470-81287489 None:intergenic 35.0%
CAACCCAATCAGTGAATTTA+TGG + chr3_2:81289269-81289288 Msa0429800:CDS 35.0%
! AGCCCATAAATTCACTGATT+GGG - chr3_2:81289275-81289294 None:intergenic 35.0%
! AGTGAATTTATGGGCTGAAA+AGG + chr3_2:81289279-81289298 Msa0429800:CDS 35.0%
! ATTCGTAATTTTCTTCCACC+TGG + chr3_2:81289316-81289335 Msa0429800:CDS 35.0%
! TTCGTAATTTTCTTCCACCT+GGG + chr3_2:81289317-81289336 Msa0429800:CDS 35.0%
CATTATACTTCAAAGGAGCA+TGG + chr3_2:81289377-81289396 Msa0429800:CDS 35.0%
! TACGATTTTCACCTTCTCAA+TGG + chr3_2:81289433-81289452 Msa0429800:CDS 35.0%
CTCTTCATGCTAGTCATAAA+GGG - chr3_2:81289475-81289494 None:intergenic 35.0%
! CAGTTTATCAGTGCTTTTGA+TGG + chr3_2:81289496-81289515 Msa0429800:CDS 35.0%
TTTCTTCCAGATGCAAAAGA+TGG + chr3_2:81289583-81289602 Msa0429800:CDS 35.0%
TTCTTCCAGATGCAAAAGAT+GGG + chr3_2:81289584-81289603 Msa0429800:CDS 35.0%
GTTAGGTTTGATTGAGAAAG+CGG + chr3_2:81289609-81289628 Msa0429800:CDS 35.0%
!! GTGGTTTTACCTTTCTCTTT+TGG + chr3_2:81289757-81289776 Msa0429800:CDS 35.0%
! GTTTTACCTTTCTCTTTTGG+AGG + chr3_2:81289760-81289779 Msa0429800:CDS 35.0%
TCTGGTACAATACTCTTTGT+TGG + chr3_2:81289982-81290001 Msa0429800:CDS 35.0%
CTGGTACAATACTCTTTGTT+GGG + chr3_2:81289983-81290002 Msa0429800:CDS 35.0%
TCATTGCAATTTGCAACAGT+TGG + chr3_2:81290197-81290216 Msa0429800:three_prime_UTR 35.0%
! AAAATCCTGCTGCAGATTTT+TGG + chr3_2:81290268-81290287 Msa0429800:three_prime_UTR 35.0%
! AAATCCTGCTGCAGATTTTT+GGG + chr3_2:81290269-81290288 Msa0429800:three_prime_UTR 35.0%
!! TTTTTGGGCTGTAGATAAAG+AGG + chr3_2:81290284-81290303 Msa0429800:three_prime_UTR 35.0%
! TTTTGGGCTGTAGATAAAGA+GGG + chr3_2:81290285-81290304 Msa0429800:three_prime_UTR 35.0%
!! GACAGAAGCTGATTTTGTGT+GGG - chr3_2:81287265-81287284 None:intergenic 40.0%
AATCAGCTTCTGTCCTTTCT+CGG + chr3_2:81287271-81287290 Msa0429800:CDS 40.0%
TTTCTCGGATCAAAGTCCAT+CGG + chr3_2:81287286-81287305 Msa0429800:CDS 40.0%
!! TTTTTCAACCCAAACAGCGT+TGG - chr3_2:81287395-81287414 None:intergenic 40.0%
GAAGGAAGGGTAAACAGAAA+GGG - chr3_2:81287419-81287438 None:intergenic 40.0%
TGAAGGAAGGGTAAACAGAA+AGG - chr3_2:81287420-81287439 None:intergenic 40.0%
! GCAACAGTTTCTTTGAAGGA+AGG - chr3_2:81287433-81287452 None:intergenic 40.0%
CACAGAATTCGTCATTTCAC+TGG + chr3_2:81287582-81287601 Msa0429800:intron 40.0%
ATTCGTGTTGAATTCGCAGA+AGG + chr3_2:81287667-81287686 Msa0429800:intron 40.0%
TGTTGAATTCGCAGAAGGTA+AGG + chr3_2:81287672-81287691 Msa0429800:intron 40.0%
! GGTTTGCTCTTCTATTCAAC+CGG - chr3_2:81287700-81287719 None:intergenic 40.0%
ATCTGGAAAAGGGAGAAATC+GGG - chr3_2:81287734-81287753 None:intergenic 40.0%
ATCATGAGTCCAGAAAGATG+TGG + chr3_2:81287766-81287785 Msa0429800:intron 40.0%
GATTTAGGGGAGAAGAAGAA+AGG + chr3_2:81287815-81287834 Msa0429800:CDS 40.0%
CATTCAGAATGGTCACTGTA+AGG - chr3_2:81287999-81288018 None:intergenic 40.0%
! CGTTAAGGGGTATACATAGT+CGG - chr3_2:81288307-81288326 None:intergenic 40.0%
!!! ATGTTTTTGGCATAGTCACC+TGG - chr3_2:81288398-81288417 None:intergenic 40.0%
GGAATCTCAGTTTCAATGCT+CGG - chr3_2:81288515-81288534 None:intergenic 40.0%
ACGAACGTAATCCATTCTTC+TGG - chr3_2:81288549-81288568 None:intergenic 40.0%
! TGGTGAAGAAATGGTTGGTA+AGG - chr3_2:81288586-81288605 None:intergenic 40.0%
!! GACAGAAGCTGATTTTGTGT+GGG - chr3_2:81287265-81287284 None:intergenic 40.0%
AATCAGCTTCTGTCCTTTCT+CGG + chr3_2:81287271-81287290 Msa0429800:CDS 40.0%
TTTCTCGGATCAAAGTCCAT+CGG + chr3_2:81287286-81287305 Msa0429800:CDS 40.0%
!! TTTTTCAACCCAAACAGCGT+TGG - chr3_2:81287395-81287414 None:intergenic 40.0%
GAAGGAAGGGTAAACAGAAA+GGG - chr3_2:81287419-81287438 None:intergenic 40.0%
TGAAGGAAGGGTAAACAGAA+AGG - chr3_2:81287420-81287439 None:intergenic 40.0%
! GCAACAGTTTCTTTGAAGGA+AGG - chr3_2:81287433-81287452 None:intergenic 40.0%
CAGCCCATAAATTCACTGAT+TGG - chr3_2:81289276-81289295 None:intergenic 40.0%
GTTAAGCTATTAATCGACCC+AGG - chr3_2:81289337-81289356 None:intergenic 40.0%
CCTCTTCATGCTAGTCATAA+AGG - chr3_2:81289476-81289495 None:intergenic 40.0%
CCTTTATGACTAGCATGAAG+AGG + chr3_2:81289473-81289492 Msa0429800:CDS 40.0%
!! CAGTGCTTTTGATGGCTTTA+AGG + chr3_2:81289504-81289523 Msa0429800:CDS 40.0%
CTTGCTTGTAAGGAAGACTA+AGG - chr3_2:81289531-81289550 None:intergenic 40.0%
! CTTAGTCTTCCTTACAAGCA+AGG + chr3_2:81289529-81289548 Msa0429800:CDS 40.0%
TCATCTTCACCTTGCTTGTA+AGG - chr3_2:81289541-81289560 None:intergenic 40.0%
! AACAACCCATCTTTTGCATC+TGG - chr3_2:81289592-81289611 None:intergenic 40.0%
!! GATGCAAAAGATGGGTTGTT+AGG + chr3_2:81289592-81289611 Msa0429800:CDS 40.0%
TATGAGGAAGCTTGTCTTCT+AGG - chr3_2:81289651-81289670 None:intergenic 40.0%
CAAGCTTCCTCATACAAAAG+TGG + chr3_2:81289657-81289676 Msa0429800:CDS 40.0%
TCTGATGTGTTGAAGGAGTT+AGG + chr3_2:81289733-81289752 Msa0429800:CDS 40.0%
GTCAAACCTCCAAAAGAGAA+AGG - chr3_2:81289769-81289788 None:intergenic 40.0%
TTCACGGGAATTAGGATGTA+TGG + chr3_2:81289877-81289896 Msa0429800:CDS 40.0%
TGGTCAGCTACAAAGTCTAT+CGG - chr3_2:81289931-81289950 None:intergenic 40.0%
AGTTAAGATCATCCAGCAAG+AGG - chr3_2:81290021-81290040 None:intergenic 40.0%
CTAATTGATGTGCTACCCAT+TGG - chr3_2:81290062-81290081 None:intergenic 40.0%
!! TTCATGTTTTGAACGGTTGC+TGG + chr3_2:81290106-81290125 Msa0429800:three_prime_UTR 40.0%
!! GGACAGAAGCTGATTTTGTG+TGG - chr3_2:81287266-81287285 None:intergenic 45.0%
! GATGGACTTTGATCCGAGAA+AGG - chr3_2:81287287-81287306 None:intergenic 45.0%
GAGAAGATAGGGAGTTGAGA+TGG - chr3_2:81287312-81287331 None:intergenic 45.0%
TTCGATAAAGAACCGCGAAC+CGG - chr3_2:81287633-81287652 None:intergenic 45.0%
ATTCGCAGAAGGTAAGGTAC+CGG + chr3_2:81287678-81287697 Msa0429800:intron 45.0%
GGAGTGTGTGTTTGTGAAGA+TGG + chr3_2:81287836-81287855 Msa0429800:CDS 45.0%
GGTCACTGTAAGGACTCATT+GGG - chr3_2:81287989-81288008 None:intergenic 45.0%
TGGTCACTGTAAGGACTCAT+TGG - chr3_2:81287990-81288009 None:intergenic 45.0%
CGGTACGTTAATTAGGTTCG+CGG - chr3_2:81288287-81288306 None:intergenic 45.0%
!! GGACAGAAGCTGATTTTGTG+TGG - chr3_2:81287266-81287285 None:intergenic 45.0%
! GATGGACTTTGATCCGAGAA+AGG - chr3_2:81287287-81287306 None:intergenic 45.0%
GAGAAGATAGGGAGTTGAGA+TGG - chr3_2:81287312-81287331 None:intergenic 45.0%
ACTACCATACAACAGTTGCG+AGG - chr3_2:81289078-81289097 None:intergenic 45.0%
TGGGCTGAAAAGGAGACAAA+AGG + chr3_2:81289289-81289308 Msa0429800:CDS 45.0%
GGGCTGAAAAGGAGACAAAA+GGG + chr3_2:81289290-81289309 Msa0429800:CDS 45.0%
AAGCTATTAATCGACCCAGG+TGG - chr3_2:81289334-81289353 None:intergenic 45.0%
GGAGCAATCGTTTGATGCTT+CGG + chr3_2:81289399-81289418 Msa0429800:CDS 45.0%
CATAAAGGGAACCTTGACTG+AGG - chr3_2:81289461-81289480 None:intergenic 45.0%
GCTTCCTCATACAAAAGTGG+TGG + chr3_2:81289660-81289679 Msa0429800:CDS 45.0%
!! CCTACCACCACTTTTGTATG+AGG - chr3_2:81289667-81289686 None:intergenic 45.0%
CCTCATACAAAAGTGGTGGT+AGG + chr3_2:81289664-81289683 Msa0429800:CDS 45.0%
TGTGTTGAAGGAGTTAGGAG+TGG + chr3_2:81289738-81289757 Msa0429800:CDS 45.0%
CATCCTAATTCCCGTGAATG+CGG - chr3_2:81289875-81289894 None:intergenic 45.0%
GCTACAAAGTCTATCGGGAT+CGG - chr3_2:81289925-81289944 None:intergenic 45.0%
GGTCAGCTACAAAGTCTATC+GGG - chr3_2:81289930-81289949 None:intergenic 45.0%
CAAGTGCATAATCCTCTTGC+TGG + chr3_2:81290006-81290025 Msa0429800:CDS 45.0%
! CAGCAGGATTTTGCAGGAAA+AGG - chr3_2:81290260-81290279 None:intergenic 45.0%
! AATCTGCAGCAGGATTTTGC+AGG - chr3_2:81290266-81290285 None:intergenic 45.0%
AGGGCGTGTGGATATAACTT+TGG + chr3_2:81290304-81290323 Msa0429800:three_prime_UTR 45.0%
GGAGAACAAATGGTTGGCGA+TGG - chr3_2:81287155-81287174 None:intergenic 50.0%
GGAAGCGACGTGAGAAGATA+GGG - chr3_2:81287323-81287342 None:intergenic 50.0%
! AGCAGCGTCTTTGAGAACAG+CGG - chr3_2:81287344-81287363 None:intergenic 50.0%
TGTCTTCTGCCAACGCTGTT+TGG + chr3_2:81287383-81287402 Msa0429800:CDS 50.0%
GTCTTCTGCCAACGCTGTTT+GGG + chr3_2:81287384-81287403 Msa0429800:CDS 50.0%
TTCACTGGAGAACCGCGAAT+TGG + chr3_2:81287597-81287616 Msa0429800:intron 50.0%
TCGCGGTTCTTTATCGAACC+CGG + chr3_2:81287635-81287654 Msa0429800:intron 50.0%
ATTCGCCTTGGTACGTGGTA+CGG - chr3_2:81288369-81288388 None:intergenic 50.0%
GGAGAACAAATGGTTGGCGA+TGG - chr3_2:81287155-81287174 None:intergenic 50.0%
! AGAGCAGTTTGGAGCGACAA+TGG - chr3_2:81288686-81288705 None:intergenic 50.0%
GGAAGCGACGTGAGAAGATA+GGG - chr3_2:81287323-81287342 None:intergenic 50.0%
! AGCAGCGTCTTTGAGAACAG+CGG - chr3_2:81287344-81287363 None:intergenic 50.0%
TGTCTTCTGCCAACGCTGTT+TGG + chr3_2:81287383-81287402 Msa0429800:CDS 50.0%
GTCTTCTGCCAACGCTGTTT+GGG + chr3_2:81287384-81287403 Msa0429800:CDS 50.0%
CATACAACAGTTGCGAGGCA+TGG - chr3_2:81289073-81289092 None:intergenic 50.0%
CATGCCTCGCAACTGTTGTA+TGG + chr3_2:81289071-81289090 Msa0429800:intron 50.0%
!! TGACTGAGGTGCCATTGAGA+AGG - chr3_2:81289447-81289466 None:intergenic 50.0%
TCTCAATGGCACCTCAGTCA+AGG + chr3_2:81289447-81289466 Msa0429800:CDS 50.0%
ACAGCCCAAAAATCTGCAGC+AGG - chr3_2:81290276-81290295 None:intergenic 50.0%
! CTGTAGATAAAGAGGGCGTG+TGG + chr3_2:81290292-81290311 Msa0429800:three_prime_UTR 50.0%
! AGCGCAGTTTGGAGCGACAA+TGG - chr3_2:81287214-81287233 None:intergenic 55.0%
!! TCTCCTCGCTGTTGGTTCTG+AGG + chr3_2:81287237-81287256 Msa0429800:CDS 55.0%
!! CTCCTCGCTGTTGGTTCTGA+GGG + chr3_2:81287238-81287257 Msa0429800:CDS 55.0%
TAGGGAGTTGAGATGGCCGA+TGG - chr3_2:81287305-81287324 None:intergenic 55.0%
CGGAAGCGACGTGAGAAGAT+AGG - chr3_2:81287324-81287343 None:intergenic 55.0%
AGAAGACAAGCATGGACCGC+CGG - chr3_2:81287371-81287390 None:intergenic 55.0%
! GCGTTGGCAGAAGACAAGCA+TGG - chr3_2:81287379-81287398 None:intergenic 55.0%
GGTTCGTGCGAACCAATTCG+CGG - chr3_2:81287612-81287631 None:intergenic 55.0%
!! GCGAATTGGTTCGCACGAAC+CGG + chr3_2:81287611-81287630 Msa0429800:intron 55.0%
TTGGTACGTGGTACGGGTTC+GGG - chr3_2:81288362-81288381 None:intergenic 55.0%
CTTGGTACGTGGTACGGGTT+CGG - chr3_2:81288363-81288382 None:intergenic 55.0%
TTCGCCTTGGTACGTGGTAC+GGG - chr3_2:81288368-81288387 None:intergenic 55.0%
TCGCAATTCGCCTTGGTACG+TGG - chr3_2:81288374-81288393 None:intergenic 55.0%
ACCAAGGCGAATTGCGAACC+AGG + chr3_2:81288377-81288396 Msa0429800:intron 55.0%
! ACCTGGTTCGCAATTCGCCT+TGG - chr3_2:81288381-81288400 None:intergenic 55.0%
CGAGGAGACTGAGAGCAGTT+TGG - chr3_2:81288697-81288716 None:intergenic 55.0%
!! TCTCCTCGCTGTTGGTTCTG+AGG + chr3_2:81287237-81287256 Msa0429800:CDS 55.0%
!! CTCCTCGCTGTTGGTTCTGA+GGG + chr3_2:81287238-81287257 Msa0429800:CDS 55.0%
TAGGGAGTTGAGATGGCCGA+TGG - chr3_2:81287305-81287324 None:intergenic 55.0%
CGGAAGCGACGTGAGAAGAT+AGG - chr3_2:81287324-81287343 None:intergenic 55.0%
AGAAGACAAGCATGGACCGC+CGG - chr3_2:81287371-81287390 None:intergenic 55.0%
! GCGTTGGCAGAAGACAAGCA+TGG - chr3_2:81287379-81287398 None:intergenic 55.0%
CGCTAAAGCTGCCGCATTCA+CGG + chr3_2:81289861-81289880 Msa0429800:CDS 55.0%
GCTAAAGCTGCCGCATTCAC+GGG + chr3_2:81289862-81289881 Msa0429800:CDS 55.0%
CTGCCGCATTCACGGGAATT+AGG + chr3_2:81289869-81289888 Msa0429800:CDS 55.0%
CGAGGAGACTGAGCGCAGTT+TGG - chr3_2:81287225-81287244 None:intergenic 60.0%
GACCCTCAGAACCAACAGCG+AGG - chr3_2:81287243-81287262 None:intergenic 60.0%
CTCAAAGACGCTGCTCCTGC+CGG + chr3_2:81287349-81287368 Msa0429800:CDS 60.0%
CGAACCCGTACCACGTACCA+AGG + chr3_2:81288361-81288380 Msa0429800:intron 60.0%
GCTCTCAGTCTCCTCGCTGT+TGG + chr3_2:81288701-81288720 Msa0429800:CDS 60.0%
GACCCTCAGAACCAACAGCG+AGG - chr3_2:81287243-81287262 None:intergenic 60.0%
CTCAAAGACGCTGCTCCTGC+CGG + chr3_2:81287349-81287368 Msa0429800:CDS 60.0%
GCGCTCAGTCTCCTCGCTGT+TGG + chr3_2:81287229-81287248 Msa0429800:CDS 65.0%
AAAGACGCTGCTCCTGCCGG+CGG + chr3_2:81287352-81287371 Msa0429800:CDS 65.0%
!! GGTTCGCACGAACCGGTTCG+CGG + chr3_2:81287618-81287637 Msa0429800:intron 65.0%
AAAGACGCTGCTCCTGCCGG+CGG + chr3_2:81287352-81287371 Msa0429800:CDS 65.0%
GACAAGCATGGACCGCCGGC+AGG - chr3_2:81287367-81287386 None:intergenic 70.0%
GACAAGCATGGACCGCCGGC+AGG - chr3_2:81287367-81287386 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 81287148 81290358 81287148 ID=Msa0429800;Name=Msa0429800
chr3_2 mRNA 81287148 81290358 81287148 ID=Msa0429800-mRNA-1;Parent=Msa0429800;Name=Msa0429800-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.33|0.25|1|1|1|4|326|547
chr3_2 exon 81287148 81287447 81287148 ID=Msa0429800-mRNA-1:exon:22458;Parent=Msa0429800-mRNA-1
chr3_2 exon 81287779 81287887 81287779 ID=Msa0429800-mRNA-1:exon:22459;Parent=Msa0429800-mRNA-1
chr3_2 exon 81288510 81288970 81288510 ID=Msa0429800-mRNA-1:exon:22460;Parent=Msa0429800-mRNA-1
chr3_2 exon 81289259 81290358 81289259 ID=Msa0429800-mRNA-1:exon:22461;Parent=Msa0429800-mRNA-1
chr3_2 CDS 81287148 81287447 81287148 ID=Msa0429800-mRNA-1:cds;Parent=Msa0429800-mRNA-1
chr3_2 CDS 81287779 81287887 81287779 ID=Msa0429800-mRNA-1:cds;Parent=Msa0429800-mRNA-1
chr3_2 CDS 81288510 81288970 81288510 ID=Msa0429800-mRNA-1:cds;Parent=Msa0429800-mRNA-1
chr3_2 CDS 81289259 81290032 81289259 ID=Msa0429800-mRNA-1:cds;Parent=Msa0429800-mRNA-1
chr3_2 three_prime_UTR 81290033 81290358 81290033 ID=Msa0429800-mRNA-1:three_prime_utr;Parent=Msa0429800-mRNA-1
Gene Sequence

>Msa0429800

ATGACCATCGCCAACCATTTGTTCTCCAAAGAAGAATATAAAGACAAGAATGTAGTGTTTTCGCCATTGTCGCTCCAAACTGCGCTCAGTCTCCTCGCTGTTGGTTCTGAGGGTCCCACACAAAATCAGCTTCTGTCCTTTCTCGGATCAAAGTCCATCGGCCATCTCAACTCCCTATCTTCTCACGTCGCTTCCGCTGTTCTCAAAGACGCTGCTCCTGCCGGCGGTCCATGCTTGTCTTCTGCCAACGCTGTTTGGGTTGAAAAAACCCTTTCTGTTTACCCTTCCTTCAAAGAAACTAAAGATGTGGAAGAAACAATTTCAGGTTGCATGAAAGATTTAGGGGAGAAGAAGAAAGGAGTGTGTGTTTGTGAAGATGGAGATGTTTATCTTATGGAACAGACGAAAGCACCGAGCATTGAAACTGAGATTCCAACCATTCAAACCAGAAGAATGGATTACGTTCGTGAATCAATCAAAAACCTTACCAACCATTTCTTCACCAAAAAAGAAAAATCTATGACCATCGCCAACCATTTGTTCTCCAAAGAAGAATATAAAGACAAGAATGTAGTGTTTTCGCCATTGTCGCTCCAAACTGCTCTCAGTCTCCTCGCTGTTGGTTCTGAGGGTCCCACACAAAATCAGCTTCTGTCCTTTCTCGGATCAAAGTCCATCGGCCATCTCAACTCCCTATCTTCTCACGTCGCTTCCGCTGTTCTCAAAGACGCTGCTCCTGCCGGCGGTCCATGCTTGTCTTCTGCCAACGCTGTTTGGGTTGAAAAAACCCTTTCTGTTTACCCTTCCTTCAAAGAAACTGTTGCTACTCATTATATGGCCACTCTCAAATCACTTGATTTCATTAACAATGCTAATAAAGCAACCCAATCAGTGAATTTATGGGCTGAAAAGGAGACAAAAGGGCTAATTCGTAATTTTCTTCCACCTGGGTCGATTAATAGCTTAACTAGACTCATCTTGACAAATGCATTATACTTCAAAGGAGCATGGGAGCAATCGTTTGATGCTTCGGAAACAAAAGACTACGATTTTCACCTTCTCAATGGCACCTCAGTCAAGGTTCCCTTTATGACTAGCATGAAGAGGCAGTTTATCAGTGCTTTTGATGGCTTTAAGGTCCTTAGTCTTCCTTACAAGCAAGGTGAAGATGAGCGACAATTCTCAATGTACGTTTTTCTTCCAGATGCAAAAGATGGGTTGTTAGGTTTGATTGAGAAAGCGGCTACTGAGTCTAACTTCCTAGAAGACAAGCTTCCTCATACAAAAGTGGTGGTAGGTGATTTCAGAATTCCAAGATTCAATATTTCTTTTGAGCTTGAAATTTCTGATGTGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCTCTTTTGGAGGTTTGACAAAAATAGCAGATTCTCCAATTAGTGTTTCTACAGTACTGCAAAAGTCTGTCATTGAAGTAGATGAAGAAGACGCTAAAGCTGCCGCATTCACGGGAATTAGGATGTATGGATGTTGTCTAAACACTTCAACTCCGATCCCGATAGACTTTGTAGCTGACCATCCTTTCTTGTTTTTGATAAGAGAAGATTTATCTGGTACAATACTCTTTGTTGGGCAAGTGCATAATCCTCTTGCTGGATGA
Protein sequence

>Msa0429800

MTIANHLFSKEEYKDKNVVFSPLSLQTALSLLAVGSEGPTQNQLLSFLGSKSIGHLNSLSSHVASAVLKDAAPAGGPCLSSANAVWVEKTLSVYPSFKETKDVEETISGCMKDLGEKKKGVCVCEDGDVYLMEQTKAPSIETEIPTIQTRRMDYVRESIKNLTNHFFTKKEKSMTIANHLFSKEEYKDKNVVFSPLSLQTALSLLAVGSEGPTQNQLLSFLGSKSIGHLNSLSSHVASAVLKDAAPAGGPCLSSANAVWVEKTLSVYPSFKETVATHYMATLKSLDFINNANKATQSVNLWAEKETKGLIRNFLPPGSINSLTRLILTNALYFKGAWEQSFDASETKDYDFHLLNGTSVKVPFMTSMKRQFISAFDGFKVLSLPYKQGEDERQFSMYVFLPDAKDGLLGLIEKAATESNFLEDKLPHTKVVVGDFRIPRFNISFELEISDVLKELGVVLPFSFGGLTKIADSPISVSTVLQKSVIEVDEEDAKAAAFTGIRMYGCCLNTSTPIPIDFVADHPFLFLIREDLSGTILFVGQVHNPLAG*