AlfalfaGEDB | Msa0429770

M. sativa cultivar zhongmu-4 / Msa0429770

KEGG: K13963
GO: GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772
PFAM: PF00079.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429770	XP_003602984.1	68.182	396	119	1	1	396	1	389	0.0	540

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429770	sp\|Q9S7T8\|SPZX_ARATH	48.500	400	190	7	1	394	1	390	1.18e-122	363

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429770	G7J5R9	68.182	396	119	1	1	396	1	389	0.0	540

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0179860	Msa0429770	0.802445	5.590231e-49	-8.615850e-47
Msa0185640	Msa0429770	-0.803434	3.493018e-49	-8.615850e-47
Msa0429710	Msa0429770	0.960460	1.395275e-118	-8.615850e-47
Msa0429770	Msa0429800	0.896182	4.713816e-76	-8.615850e-47
Msa0429770	Msa0500970	0.964568	1.718099e-123	-8.615850e-47
Msa0429770	Msa0543900	0.812320	4.498531e-51	-8.615850e-47
Msa0429770	Msa0599770	0.816113	6.537612e-52	-8.615850e-47
Msa0429770	Msa0641020	0.828360	9.390694e-55	-8.615850e-47
Msa0429770	Msa0718240	0.804594	2.004581e-49	-8.615850e-47
Msa0429770	Msa0752580	0.815159	1.066503e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429770	MtrunA17_Chr3g0133481	68.182	396	119	1	1	396	1	389	0.0	540
Msa0429770	MtrunA17_Chr3g0133511	62.716	405	133	5	1	394	1	398	7.91e-175	493
Msa0429770	MtrunA17_Chr3g0133391	63.750	400	130	5	1	396	1	389	1.51e-169	479
Msa0429770	MtrunA17_Chr7g0233731	60.859	396	143	3	2	392	12	400	1.75e-166	474
Msa0429770	MtrunA17_Chr7g0233731	70.968	62	17	1	336	396	399	460	4.52e-17	82.8
Msa0429770	MtrunA17_Chr8g0346621	63.077	390	127	6	12	396	20	397	2.87e-166	471
Msa0429770	MtrunA17_Chr4g0023671	61.347	401	137	5	1	396	1	388	1.45e-165	469
Msa0429770	MtrunA17_Chr3g0083861	61.965	397	132	5	4	394	56	439	1.07e-163	466
Msa0429770	MtrunA17_Chr7g0233701	62.500	400	138	3	2	396	4	396	3.92e-163	463
Msa0429770	MtrunA17_Chr3g0133411	58.458	402	133	5	22	396	44	438	3.23e-157	450

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429770	AT1G47710.1	48.500	400	190	7	1	394	1	390	1.20e-123	363
Msa0429770	AT1G47710.2	48.500	400	190	7	1	394	28	417	5.81e-123	362
Msa0429770	AT3G45220.1	45.924	368	179	4	39	393	30	390	6.24e-109	325
Msa0429770	AT2G25240.1	47.658	363	172	7	39	393	30	382	8.77e-108	322
Msa0429770	AT2G26390.1	46.594	367	173	8	39	393	31	386	1.87e-106	319
Msa0429770	AT1G64030.1	42.386	394	198	6	4	393	3	371	1.81e-98	298
Msa0429770	AT1G62170.1	42.935	368	180	5	36	395	88	433	1.89e-97	297
Msa0429770	AT2G14540.1	44.875	361	178	4	36	393	55	397	2.43e-95	291
Msa0429770	AT1G62170.2	39.651	401	179	6	36	395	88	466	1.82e-91	283
Msa0429770	AT2G35580.1	42.577	357	181	7	43	393	33	371	2.43e-91	280

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Find 99 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACGCTGCTCCTGCCGG+CGG	0.624527	3_2:-81239110	Msa0429770:CDS
AACCATTCAAACCAGAAGAA+TGG	0.422288	3_2:-81239399	Msa0429770:exon
AACCCAATCAGTGAATTTAT+GGG	0.457167	3_2:-81238664	Msa0429770:CDS
AACTGTTGCTACTCATTATA+TGG	0.315904	3_2:-81239018	Msa0429770:CDS
AAGCTATTAATCGACCCAGG+TGG	0.746620	3_2:+81238603	None:intergenic
AATACTGTAGAAACACTAAT+TGG	0.391329	3_2:+81238129	None:intergenic
AATCAGCTTCTGTCCTTTCT+CGG	0.370054	3_2:-81239191	Msa0429770:CDS
ACAAATGCATTATACTTCAA+AGG	0.517977	3_2:-81238564	Msa0429770:CDS
ACGAACGTAATCCATTCTTC+TGG	0.456785	3_2:+81239388	None:intergenic
ACTAAAGCTGCCGCATTCAC+TGG	0.473621	3_2:-81238072	Msa0429770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGTTGCTACTCATTATA+TGG	-	chr3_2:81238027-81238046	Msa0429770:CDS	30.0%
AACCCAATCAGTGAATTTAT+GGG	-	chr3_2:81238381-81238400	Msa0429770:CDS	30.0%
TGAAATTTCTGATGTGTTGA+AGG	-	chr3_2:81238837-81238856	Msa0429770:intron	30.0%
GTCATTGAAGTAAATGAAGA+AGG	-	chr3_2:81238949-81238968	Msa0429770:intron	30.0%
TAATCAAAAACAAGAAAGGG+TGG	+	chr3_2:81239062-81239081	None:intergenic	30.0%
TTGATTAGAGAAGATTTGTC+TGG	-	chr3_2:81239075-81239094	Msa0429770:CDS	30.0%
CATGGATCATATCTAATTGA+TGG	+	chr3_2:81239185-81239204	None:intergenic	30.0%
AACTGTTGCTACTCATTATA+TGG	-	chr3_2:81238027-81238046	Msa0429770:CDS	30.0%
AACCCAATCAGTGAATTTAT+GGG	-	chr3_2:81238381-81238400	Msa0429770:CDS	30.0%
TGAAATTTCTGATGTGTTGA+AGG	-	chr3_2:81238837-81238856	Msa0429770:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	81237636	81239431	81237636	ID=Msa0429770;Name=Msa0429770
chr3_2	mRNA	81237636	81239431	81237636	ID=Msa0429770-mRNA-1;Parent=Msa0429770;Name=Msa0429770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=29\|1\|1\|1\|1\|1\|2\|288\|396
chr3_2	exon	81237636	81238697	81237636	ID=Msa0429770-mRNA-1:exon:22415;Parent=Msa0429770-mRNA-1
chr3_2	exon	81238986	81239431	81238986	ID=Msa0429770-mRNA-1:exon:22414;Parent=Msa0429770-mRNA-1
chr3_2	five_prime_UTR	81239403	81239431	81239403	ID=Msa0429770-mRNA-1:five_prime_utr;Parent=Msa0429770-mRNA-1
chr3_2	CDS	81238986	81239402	81238986	ID=Msa0429770-mRNA-1:cds;Parent=Msa0429770-mRNA-1
chr3_2	CDS	81237924	81238697	81237924	ID=Msa0429770-mRNA-1:cds;Parent=Msa0429770-mRNA-1
chr3_2	three_prime_UTR	81237636	81237923	81237636	ID=Msa0429770-mRNA-1:three_prime_utr;Parent=Msa0429770-mRNA-1

Gene Sequence

>Msa0429770

ATGGATTACGTTCGTGAATCAATCAAAAACCTTACCAACCATTTCTTCACCAAAAAAGAAAAATCTATGACCATCGCCAACCATTTGTTCTCCAAAGAAGAATATAAAGACAAGAATGTAGTGTTTTCGCCATTGTCGCTCCAAACTGCGCTCAGTCTCCTCGCTGTTGGTTCTGAGGGTCCCACACAAAATCAGCTTCTGTCCTTTCTCGGATCAAAGTCCATCGGCCATCTCAACTCCCTATCTTCTCACGTCGCTTCCGCTGTTCTCAAAGACGCTGCTCCTGCCGGCGGTCCATGCTTGTCTTCTGCCAACGCTGTTTGGGTTGAAAAAACCCTTTCTGTTTACCCTTCCTTCAAAGAAACTGTTGCTACTCATTATATGGCCACTCTCAAATCACTTGATTTCATTAACAATGCTAATAAAGCAACCCAATCAGTGAATTTATGGGCTGAAAAGGAGACAAAAGGGCTAATTCGTAATTTTCTTCCACCTGGGTCGATTAATAGCTTAACTAGACTCATCTTGACAAATGCATTATACTTCAAAGGAGCATGGGAGCAATCGTTTGATGCTTCGGAAACAAAAGACTACGATTTTCACCTTCTCAATGGCACCTCAGTCAAGGTTCCCTTTATGACTAGCATGAAGAGGCAGTTTATCAGTGCTTTTGATGGCTTTAAGGTCCTTAGTCTTCCTTACAAGCAAGGTGAAGATGAGCGACAATTCTCAATGTACGTTTTTCTTCCAGATGCAAAAGATGGGTTGTTAGGTTTGATTGAGAAAGCGGCTACTGAGTCTAACTTCCTAGAAGACAAGCTTCCTCATACAAAAGTGGTGGTAGGTGATTTCAGAATTCCAAGATTCAATATTTCTTTTGAGCTTGAAATTTCTGATGTGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCTCTATTGGAGGTTTGACAAAAATAGTGGACTCTCCAATTAGTGTTTCTACAGTATTGCAAAAGTCTGTCATTGAAGTAAATGAAGAAGGCACTAAAGCTGCCGCATTCACTGGAATTGGGATGGCTGGATGTTGTCCATACACTTCAACTCCGATACCAATAGACTTTGTAGCTGACCACCCTTTCTTGTTTTTGATTAGAGAAGATTTGTCTGGTACAATACTCTTTGTTGGCCAAGTGCATAATCCCCTCGCTGGATGA

Protein sequence

>Msa0429770

MDYVRESIKNLTNHFFTKKEKSMTIANHLFSKEEYKDKNVVFSPLSLQTALSLLAVGSEGPTQNQLLSFLGSKSIGHLNSLSSHVASAVLKDAAPAGGPCLSSANAVWVEKTLSVYPSFKETVATHYMATLKSLDFINNANKATQSVNLWAEKETKGLIRNFLPPGSINSLTRLILTNALYFKGAWEQSFDASETKDYDFHLLNGTSVKVPFMTSMKRQFISAFDGFKVLSLPYKQGEDERQFSMYVFLPDAKDGLLGLIEKAATESNFLEDKLPHTKVVVGDFRIPRFNISFELEISDVLKELGVVLPFSIGGLTKIVDSPISVSTVLQKSVIEVNEEGTKAAAFTGIGMAGCCPYTSTPIPIDFVADHPFLFLIREDLSGTILFVGQVHNPLAG*