AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1000020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000020 MtrunA17_Chr6g0486111 95.988 324 11 2 1 323 1 323 0.0 636
Msa1000020 MtrunA17_Chr8g0390301 62.712 354 78 16 1 320 1 334 2.63e-127 367
Msa1000020 MtrunA17_Chr2g0331431 49.128 344 122 11 14 320 1 328 6.18e-93 279
Msa1000020 MtrunA17_Chr2g0280631 46.108 167 61 4 157 322 276 414 4.30e-37 137
Msa1000020 MtrunA17_Chr2g0318971 43.931 173 71 2 147 319 288 434 2.00e-36 135
Msa1000020 MtrunA17_Chr3g0141841 40.933 193 75 4 143 319 283 452 1.80e-35 133
Msa1000020 MtrunA17_Chr8g0361501 43.558 163 66 3 157 319 305 441 8.02e-34 129
Msa1000020 MtrunA17_Chr1g0207771 49.655 145 58 2 172 316 141 270 2.29e-33 124
Msa1000020 MtrunA17_Chr1g0199091 43.478 161 62 4 166 323 399 533 7.44e-31 121
Msa1000020 MtrunA17_Chr4g0045561 36.413 184 80 3 132 315 4 150 4.29e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000020 AT4G29100.1 46.229 411 129 15 1 323 1 407 1.68e-95 289
Msa1000020 AT2G20100.1 62.130 169 54 2 160 318 190 358 1.40e-62 203
Msa1000020 AT4G29100.2 42.651 347 113 14 1 265 1 343 2.65e-62 202
Msa1000020 AT2G20100.3 48.837 215 54 3 160 318 190 404 2.40e-53 180
Msa1000020 AT2G20100.4 62.385 109 38 1 160 265 190 298 3.97e-35 130
Msa1000020 AT2G20100.2 62.385 109 38 1 160 265 190 298 3.97e-35 130
Msa1000020 AT3G19500.1 47.973 148 49 3 172 319 140 259 8.58e-33 122
Msa1000020 AT3G20640.4 46.108 167 58 5 158 319 250 389 9.60e-33 125
Msa1000020 AT3G20640.1 46.108 167 58 5 158 319 312 451 1.93e-32 125
Msa1000020 AT1G61660.7 46.753 154 58 3 170 323 264 393 1.93e-32 124
Msa1000020 AT1G61660.1 46.753 154 58 3 170 323 264 393 1.93e-32 124
Msa1000020 AT1G61660.3 46.753 154 58 3 170 323 261 390 2.02e-32 124
Msa1000020 AT1G27660.1 53.676 136 30 4 170 300 316 423 4.28e-32 124
Msa1000020 AT2G31730.2 43.511 131 39 2 186 316 39 134 7.42e-27 103
Msa1000020 AT2G31730.1 43.511 131 39 2 186 316 39 134 7.42e-27 103
Msa1000020 AT4G21340.1 44.966 149 57 5 157 302 161 287 6.15e-26 105
Msa1000020 AT4G05170.3 46.154 130 51 3 171 298 40 152 3.11e-25 100
Msa1000020 AT4G05170.2 35.417 240 105 8 64 298 76 270 6.64e-25 102
Msa1000020 AT4G05170.5 46.154 130 51 3 171 298 133 245 7.15e-25 101
Msa1000020 AT4G05170.1 46.154 130 51 3 171 298 176 288 8.62e-25 102
Msa1000020 AT1G05710.6 41.985 131 41 2 186 316 29 124 1.40e-24 97.4
Msa1000020 AT1G05710.11 40.909 132 41 2 186 316 37 132 1.61e-24 97.4
Msa1000020 AT1G05710.5 40.909 132 41 2 186 316 37 132 1.61e-24 97.4
Msa1000020 AT1G05710.1 40.909 132 41 2 186 316 37 132 1.61e-24 97.4
Msa1000020 AT1G05710.14 40.909 132 41 2 186 316 37 132 1.61e-24 97.4
Msa1000020 AT1G05710.3 40.909 132 41 2 186 316 37 132 1.61e-24 97.4
Msa1000020 AT1G05710.4 40.909 132 41 2 186 316 37 132 1.61e-24 97.4
Msa1000020 AT1G05710.12 40.909 132 41 2 186 316 37 132 1.61e-24 97.4
Msa1000020 AT1G31050.1 43.871 155 59 6 172 323 305 434 2.15e-24 103
Msa1000020 AT1G31050.6 43.871 155 59 6 172 323 309 438 2.60e-24 102
Msa1000020 AT1G05710.9 42.857 133 59 4 186 316 29 146 3.57e-24 97.1
Msa1000020 AT1G05710.8 42.857 133 59 4 186 316 29 146 3.57e-24 97.1
Msa1000020 AT1G05710.13 42.857 133 59 4 186 316 37 154 5.02e-24 96.7
Msa1000020 AT1G05710.2 42.857 133 59 4 186 316 37 154 5.02e-24 96.7
Msa1000020 AT1G05710.10 42.857 133 59 4 186 316 37 154 5.02e-24 96.7
Msa1000020 AT1G05710.7 42.857 133 59 4 186 316 37 154 5.02e-24 96.7
Msa1000020 AT1G31050.7 44.079 152 57 6 172 320 305 431 1.90e-23 100
Msa1000020 AT4G05170.7 37.696 191 87 7 64 251 76 237 2.58e-21 91.3
Msa1000020 AT1G49830.2 42.623 122 41 2 196 317 133 225 4.91e-21 90.9
Msa1000020 AT1G49830.1 42.623 122 41 2 196 317 134 226 4.95e-21 90.9
Msa1000020 AT1G61660.6 62.162 74 28 0 170 243 264 337 6.70e-21 92.0
Msa1000020 AT1G61660.2 62.162 74 28 0 170 243 264 337 6.70e-21 92.0
Msa1000020 AT3G20640.3 52.632 95 39 2 158 247 312 405 1.07e-20 92.4
Msa1000020 AT3G19500.2 61.765 68 26 0 172 239 140 207 6.98e-20 87.0
Msa1000020 AT4G05170.6 38.462 169 73 6 64 229 76 216 2.30e-19 85.5
Msa1000020 AT4G05170.4 38.462 169 73 6 64 229 76 216 2.30e-19 85.5
Msa1000020 AT1G61660.4 41.176 119 46 3 205 323 277 371 1.68e-17 82.8
Msa1000020 AT3G20640.2 54.545 77 29 2 158 229 312 387 4.74e-16 78.6
Msa1000020 AT1G31050.2 53.030 66 30 1 167 231 300 365 9.22e-12 65.9
Msa1000020 AT1G31050.5 53.030 66 30 1 167 231 304 369 9.71e-12 65.9

Find 116 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAGTTGGTGCATAATT+AGG 0.122725 6_4:-82701754 None:intergenic
CCCCATTAATAATTTAAATT+TGG 0.201391 6_4:-82706590 None:intergenic
GACCAAATTTAAATTATTAA+TGG 0.219895 6_4:+82706588 Msa1000020:three_prime_UTR
TTATTGATGTTCCACCAATT+AGG 0.248969 6_4:-82701670 None:intergenic
TTACAGCTCCTAAATGAAAA+TGG 0.255266 6_4:+82706118 Msa1000020:intron
ACCAAATTTAAATTATTAAT+GGG 0.263545 6_4:+82706589 Msa1000020:three_prime_UTR
CTACTCTTTAGGTCCTTCTT+TGG 0.274553 6_4:-82706464 None:intergenic
ATGACAATGGAGCTGATTAT+TGG 0.285895 6_4:+82706531 Msa1000020:CDS
CATCAGCTTGTTTCCCCATT+TGG 0.289480 6_4:+82703558 Msa1000020:CDS
ATTACCTGACCAGGGTCTTC+AGG 0.299545 6_4:-82705892 None:intergenic
CCTGATCCATTGTCCAAGTA+TGG 0.317233 6_4:-82704581 None:intergenic
GGCTCTTAGCTTACCATACT+TGG 0.320593 6_4:+82704568 Msa1000020:intron
TGATGGCTAGTAACCCTAAT+TGG 0.323527 6_4:+82701656 Msa1000020:CDS
TATTGATGTTCCACCAATTA+GGG 0.326053 6_4:-82701669 None:intergenic
ATGAAGTTGGTGCATAATTA+GGG 0.328916 6_4:-82701753 None:intergenic
CTAGCCATCATTTGTTGAAC+TGG 0.334387 6_4:-82701643 None:intergenic
TGGTTATATCAGATTCCTTC+AGG 0.336279 6_4:+82704389 Msa1000020:CDS
CAGGTTAGGAAGGAGAAGTT+AGG 0.364935 6_4:+82703516 Msa1000020:intron
CATATAGGTAATTAAATTCA+TGG 0.368760 6_4:+82706674 Msa1000020:three_prime_UTR
CATATTGAGGTTGATTAAGT+AGG 0.370429 6_4:-82701452 None:intergenic
GAAAATAAAGGAGGAGGTTG+TGG 0.373125 6_4:-82701709 None:intergenic
TTAGAAGGAGATGAAAATAA+AGG 0.374150 6_4:-82701721 None:intergenic
TTGAACAACACCTCTATTCA+TGG 0.375089 6_4:-82701614 None:intergenic
TCTGTCTTGTTAGAAGCTAT+TGG 0.377963 6_4:+82704369 Msa1000020:CDS
ATATTGAGGTTGATTAAGTA+GGG 0.385136 6_4:-82701451 None:intergenic
AATTAATTACCTTTCCAAAT+GGG 0.386503 6_4:-82703572 None:intergenic
AGTTGTTGACTCCATGGTTC+GGG 0.390425 6_4:-82701820 None:intergenic
ACATCAACAAGAGAAGCATT+TGG 0.400442 6_4:-82702362 None:intergenic
ACTTGTAGTGTACATGATAC+TGG 0.401193 6_4:-82706503 None:intergenic
TTAGGGTTGAGAAAGTTAGA+AGG 0.407564 6_4:-82701736 None:intergenic
TGACAATGGAGCTGATTATT+GGG 0.408868 6_4:+82706532 Msa1000020:CDS
CCCTAGGAGGAGGAGGCTTT+CGG 0.409114 6_4:+82706561 Msa1000020:CDS
TTTCTACAAAGACATTGTTT+AGG 0.411644 6_4:+82701486 Msa1000020:five_prime_UTR
TACAACTCAAACTACTTTCA+AGG 0.412851 6_4:+82703220 Msa1000020:CDS
TTTAATCTTAATTAGGTTCA+AGG 0.413424 6_4:+82705850 Msa1000020:intron
GACACAACCCTCTACTCTTT+AGG 0.414717 6_4:-82706475 None:intergenic
TAATTAATTACCTTTCCAAA+TGG 0.416474 6_4:-82703573 None:intergenic
AATTGAAGGGGTGGAATTGT+GGG 0.425149 6_4:+82702281 Msa1000020:intron
GAGTTGTTGACTCCATGGTT+CGG 0.439817 6_4:-82701821 None:intergenic
TAATTGAAGGGGTGGAATTG+TGG 0.447002 6_4:+82702280 Msa1000020:intron
AAAGGAAGAAAAGATGAAGT+TGG 0.451016 6_4:-82701766 None:intergenic
AAAGGAGGAGGTTGTGGAGA+TGG 0.454745 6_4:-82701703 None:intergenic
AAGAAAGTGAGAAAAGAGAA+AGG 0.455130 6_4:+82701523 Msa1000020:five_prime_UTR
CATTAGCAAAATATTTAAGA+TGG 0.455439 6_4:+82706882 Msa1000020:three_prime_UTR
AAAAGTAAAGCAATAAAGAA+AGG 0.461557 6_4:+82701330 Msa1000020:five_prime_UTR
GCACCTGCCCTAGGAGGAGG+AGG 0.461982 6_4:+82706554 Msa1000020:CDS
TAGAGTTTGAATAATAATCA+TGG 0.466441 6_4:-82701393 None:intergenic
AAACACAAGGCAACAACATC+CGG 0.472522 6_4:+82704604 Msa1000020:CDS
TTACCTGACCAGGGTCTTCA+GGG 0.475060 6_4:-82705891 None:intergenic
CTCTCCAGTTCAACAAATGA+TGG 0.475521 6_4:+82701639 Msa1000020:CDS
ACCGAAAGCCTCCTCCTCCT+AGG 0.478830 6_4:-82706562 None:intergenic
ATTAATTACCTTTCCAAATG+GGG 0.483813 6_4:-82703571 None:intergenic
AAGAAGGACCTAAAGAGTAG+AGG 0.491449 6_4:+82706467 Msa1000020:CDS
ATTCCTTCAGGCTCAAATTG+AGG 0.494505 6_4:+82704401 Msa1000020:CDS
AAGTGCAACAGTACTACATC+TGG 0.495170 6_4:+82703164 Msa1000020:intron
CCATACTTGGACAATGGATC+AGG 0.498280 6_4:+82704581 Msa1000020:CDS
TCAGGAAATAGCTATGCATA+TGG 0.501689 6_4:+82702398 Msa1000020:CDS
ATTCCCTGAAGACCCTGGTC+AGG 0.501966 6_4:+82705888 Msa1000020:CDS
TTTGTAATAAAATTCACAAA+GGG 0.503503 6_4:+82701574 Msa1000020:five_prime_UTR
AGCTTACCATACTTGGACAA+TGG 0.504007 6_4:+82704575 Msa1000020:CDS
TTCTCAATTTCAGGTTAGGA+AGG 0.504978 6_4:+82703506 Msa1000020:intron
GATTATTGGGCACCTGCCCT+AGG 0.505746 6_4:+82706545 Msa1000020:CDS
TTTCAACAACAACAACATGT+TGG 0.505959 6_4:+82702457 Msa1000020:CDS
AGAAGGACCTAAAGAGTAGA+GGG 0.506332 6_4:+82706468 Msa1000020:CDS
ATGGGGAAACAAGCTGATGA+AGG 0.508848 6_4:-82703554 None:intergenic
CAACACCTCTATTCATGGTA+TGG 0.512299 6_4:-82701609 None:intergenic
AAGGGGTGGAATTGTGGGAG+AGG 0.513254 6_4:+82702286 Msa1000020:intron
GGAGCACCACACCCTTTGGT+TGG 0.517651 6_4:-82701428 None:intergenic
TGGGCACCTGCCCTAGGAGG+AGG 0.520166 6_4:+82706551 Msa1000020:CDS
GGAGATGAAAATAAAGGAGG+AGG 0.522950 6_4:-82701715 None:intergenic
GTGGGAGAGGAAGATAAGAT+TGG 0.524644 6_4:+82702299 Msa1000020:CDS
ATAAGCCATACCATGAATAG+AGG 0.526941 6_4:+82701604 Msa1000020:exon
AGATAGTAAACAAAGACAAA+AGG 0.529273 6_4:+82701359 Msa1000020:five_prime_UTR
TATCATGTACACTACAAGTT+GGG 0.530955 6_4:+82706507 Msa1000020:CDS
ATATATTCTAGCATGCATAT+AGG 0.531269 6_4:+82706659 Msa1000020:three_prime_UTR
ATCCAAAGGATTACCTGACC+AGG 0.531475 6_4:-82705901 None:intergenic
GATGTTAAACAAGAAAGCTC+AGG 0.533379 6_4:+82702380 Msa1000020:CDS
AAGCCTCCTCCTCCTAGGGC+AGG 0.533559 6_4:-82706557 None:intergenic
GCATCATGAGCAATCAGCCT+TGG 0.535614 6_4:-82706741 None:intergenic
TACATGAGTTGTTGACTCCA+TGG 0.541593 6_4:-82701826 None:intergenic
TTCTCAAGAAGAACCAAAGA+AGG 0.544458 6_4:+82706451 Msa1000020:CDS
TTGCAAATACTAGTTCATCA+TGG 0.545751 6_4:-82706804 None:intergenic
CATGAGCAATCAGCCTTGGT+AGG 0.546191 6_4:-82706737 None:intergenic
CCGAAAGCCTCCTCCTCCTA+GGG 0.547448 6_4:-82706561 None:intergenic
TAGCAAAATATTTAAGATGG+TGG 0.548569 6_4:+82706885 Msa1000020:three_prime_UTR
AACTTTGAGAGGTCATATTG+AGG 0.549294 6_4:-82701465 None:intergenic
GAAGAGGAAAGCAGCTGAAG+AGG 0.554156 6_4:+82706144 Msa1000020:CDS
GAAGGAGATGAAAATAAAGG+AGG 0.562051 6_4:-82701718 None:intergenic
TGCAACAGTACTACATCTGG+TGG 0.567465 6_4:+82703167 Msa1000020:CDS
GCTTGTTTCCCCATTTGGAA+AGG 0.570374 6_4:+82703563 Msa1000020:CDS
ATCAAGAGCTTCCCGAACCA+TGG 0.573656 6_4:+82701809 Msa1000020:CDS
CCAAATTTAAATTATTAATG+GGG 0.575170 6_4:+82706590 Msa1000020:three_prime_UTR
TGTTTATTCCCTGAAGACCC+TGG 0.579599 6_4:+82705883 Msa1000020:CDS
TCACCTCAATTTGAGCCTGA+AGG 0.591976 6_4:-82704404 None:intergenic
TGGCTAGTAACCCTAATTGG+TGG 0.593806 6_4:+82701659 Msa1000020:CDS
GGAGGAGGTTGTGGAGATGG+TGG 0.593961 6_4:-82701700 None:intergenic
TAAATGAAAATGGTTTGAAG+AGG 0.595062 6_4:+82706128 Msa1000020:CDS
GTATCATGTACACTACAAGT+TGG 0.599973 6_4:+82706506 Msa1000020:CDS
TATTGAGGTTGATTAAGTAG+GGG 0.601230 6_4:-82701450 None:intergenic
ATAAGTCCAACCAAAGGGTG+TGG 0.604349 6_4:+82701422 Msa1000020:five_prime_UTR
ATTGAGGTTGATTAAGTAGG+GGG 0.607577 6_4:-82701449 None:intergenic
TGGGGAAACAAGCTGATGAA+GGG 0.608733 6_4:-82703553 None:intergenic
GCAACAGTACTACATCTGGT+GGG 0.617876 6_4:+82703168 Msa1000020:CDS
TATTGGGCACCTGCCCTAGG+AGG 0.619502 6_4:+82706548 Msa1000020:CDS
AATAGCTATGCATATGGACA+TGG 0.627229 6_4:+82702404 Msa1000020:CDS
ACCTCAGAAGATCGATCTAG+TGG 0.628411 6_4:-82702521 None:intergenic
CAACAGTACTACATCTGGTG+GGG 0.629134 6_4:+82703169 Msa1000020:CDS
CTACAAGTTGGGAATGACAA+TGG 0.634609 6_4:+82706518 Msa1000020:CDS
ACCACTAGATCGATCTTCTG+AGG 0.634967 6_4:+82702520 Msa1000020:CDS
GTCTTTGTAGAAACTTTGAG+AGG 0.647479 6_4:-82701476 None:intergenic
TCAGAAGATCGATCTAGTGG+TGG 0.660060 6_4:-82702518 None:intergenic
TCCAAAGGATTACCTGACCA+GGG 0.669498 6_4:-82705900 None:intergenic
ACAATAGTAATATAGATGTG+AGG 0.676915 6_4:+82702492 Msa1000020:CDS
GGTGGAACATCAATAACATG+AGG 0.683914 6_4:+82701677 Msa1000020:CDS
AATAGCTTCTAACAAGACAG+AGG 0.708748 6_4:-82704367 None:intergenic
ACAATGGATCAGGAAACACA+AGG 0.752248 6_4:+82704591 Msa1000020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATCACTATTTTTTTTTA+TGG + chr6_4:82701866-82701885 Msa1000020:intron 10.0%
!!! TAATCACTATTTTTTTTTAT+GGG + chr6_4:82701867-82701886 Msa1000020:intron 10.0%
!!! AAAATCTAATTAATTGTTTT+TGG + chr6_4:82702256-82702275 Msa1000020:intron 10.0%
!!! TTGCATATATAATTTTATAT+TGG - chr6_4:82702771-82702790 None:intergenic 10.0%
!! AAAATTGTTATAAATTAAAG+TGG + chr6_4:82703742-82703761 Msa1000020:intron 10.0%
!!! TAGTTTATAACTTTTTATTT+GGG - chr6_4:82705060-82705079 None:intergenic 10.0%
!!! TTAGTTTATAACTTTTTATT+TGG - chr6_4:82705061-82705080 None:intergenic 10.0%
!!! CTTTTATAAAAAAGATTAAA+GGG - chr6_4:82705248-82705267 None:intergenic 10.0%
!!! TCTTTTATAAAAAAGATTAA+AGG - chr6_4:82705249-82705268 None:intergenic 10.0%
!! GTAATTATTTAATCTTAATT+AGG + chr6_4:82705843-82705862 Msa1000020:intron 10.0%
!! ACCAAATTTAAATTATTAAT+GGG + chr6_4:82706589-82706608 Msa1000020:three_prime_UTR 10.0%
!!! TTTTGTAATAAAATTCACAA+AGG + chr6_4:82701573-82701592 Msa1000020:five_prime_UTR 15.0%
!! TTTGTAATAAAATTCACAAA+GGG + chr6_4:82701574-82701593 Msa1000020:five_prime_UTR 15.0%
!! TAATTAAATATTGTAAAGCA+TGG - chr6_4:82702730-82702749 None:intergenic 15.0%
!! AATTTCTTATTGAATAAACT+AGG - chr6_4:82703601-82703620 None:intergenic 15.0%
!!! TTATATGCTTTTTAATAGAA+AGG + chr6_4:82703623-82703642 Msa1000020:intron 15.0%
!! CATTTAATAAATTATGTATG+TGG + chr6_4:82704803-82704822 Msa1000020:intron 15.0%
!!! TAAGAAATTTTTCACTTTTT+TGG - chr6_4:82704867-82704886 None:intergenic 15.0%
!! TGCTTCAAAAAAAAAAAAAT+TGG - chr6_4:82705105-82705124 None:intergenic 15.0%
!! ATACATATATTGTTAATTAG+AGG + chr6_4:82705194-82705213 Msa1000020:intron 15.0%
!! TACATATATTGTTAATTAGA+GGG + chr6_4:82705195-82705214 Msa1000020:intron 15.0%
!! TGACTTTATAAAAAAAAAAC+CGG + chr6_4:82705333-82705352 Msa1000020:intron 15.0%
!! TTTGAATATAAATAACCAAA+TGG + chr6_4:82705495-82705514 Msa1000020:intron 15.0%
!! ATATATGAATAATCAAAACA+AGG + chr6_4:82705980-82705999 Msa1000020:intron 15.0%
!! TATATGAATAATCAAAACAA+GGG + chr6_4:82705981-82706000 Msa1000020:intron 15.0%
!!! TTTTGGTCTATAATTTTTAT+TGG - chr6_4:82706262-82706281 None:intergenic 15.0%
!!! TCAAAGACAAAATATTTTTT+TGG - chr6_4:82706279-82706298 None:intergenic 15.0%
!! GACCAAATTTAAATTATTAA+TGG + chr6_4:82706588-82706607 Msa1000020:three_prime_UTR 15.0%
!! CCAAATTTAAATTATTAATG+GGG + chr6_4:82706590-82706609 Msa1000020:three_prime_UTR 15.0%
!! AAAAGTAAAGCAATAAAGAA+AGG + chr6_4:82701330-82701349 Msa1000020:five_prime_UTR 20.0%
!! TAGAGTTTGAATAATAATCA+TGG - chr6_4:82701396-82701415 None:intergenic 20.0%
!! AATCACTACTAAATTAGTAA+GGG + chr6_4:82701895-82701914 Msa1000020:intron 20.0%
!! ATGTATAATATTCACCATAA+TGG - chr6_4:82702084-82702103 None:intergenic 20.0%
!!! TTAGCATTTGATTTTGAAAT+TGG - chr6_4:82702331-82702350 None:intergenic 20.0%
!!! TCATATTACCTTTTTTTTCT+TGG + chr6_4:82702632-82702651 Msa1000020:intron 20.0%
!!! TTTTTTAGCTTGAAATCATA+AGG + chr6_4:82702816-82702835 Msa1000020:intron 20.0%
!!! TTTTTAGCTTGAAATCATAA+GGG + chr6_4:82702817-82702836 Msa1000020:intron 20.0%
!! AAAAATTTCTTCATGTATTG+TGG + chr6_4:82702875-82702894 Msa1000020:intron 20.0%
!! AAAATTTCTTCATGTATTGT+GGG + chr6_4:82702876-82702895 Msa1000020:intron 20.0%
!!! CTATATTTTGTTGTTGTATT+AGG - chr6_4:82703437-82703456 None:intergenic 20.0%
!! AATTAATTACCTTTCCAAAT+GGG - chr6_4:82703575-82703594 None:intergenic 20.0%
!! TAATTAATTACCTTTCCAAA+TGG - chr6_4:82703576-82703595 None:intergenic 20.0%
!!! AATTTTTTCTCTAATAGTGA+TGG - chr6_4:82703848-82703867 None:intergenic 20.0%
!! TGTAGTAGCAAATAAATTAA+AGG - chr6_4:82704090-82704109 None:intergenic 20.0%
!! ATTGCATTATATATAGAAAG+TGG + chr6_4:82704290-82704309 Msa1000020:intron 20.0%
!!! ATGACAAGTAATTTTTTTGA+GGG - chr6_4:82704665-82704684 None:intergenic 20.0%
!!! TATGACAAGTAATTTTTTTG+AGG - chr6_4:82704666-82704685 None:intergenic 20.0%
!!! AAATTTCTTACATTTGAGAT+CGG + chr6_4:82704877-82704896 Msa1000020:intron 20.0%
!! AAGATCAAATATATCAATCT+TGG + chr6_4:82705309-82705328 Msa1000020:intron 20.0%
!!! TTTTAAAGTAATACTTCTTC+CGG - chr6_4:82705355-82705374 None:intergenic 20.0%
!!! AGAAGTATTACTTTAAAAAC+TGG + chr6_4:82705357-82705376 Msa1000020:intron 20.0%
!!! TGGAATATGACAATTATTTT+AGG + chr6_4:82705377-82705396 Msa1000020:intron 20.0%
!! AACAATTATCATGGATAATA+TGG + chr6_4:82705435-82705454 Msa1000020:intron 20.0%
!! TTTAATCTTAATTAGGTTCA+AGG + chr6_4:82705850-82705869 Msa1000020:intron 20.0%
!! ATATGAATAATCAAAACAAG+GGG + chr6_4:82705982-82706001 Msa1000020:intron 20.0%
!! CCCCATTAATAATTTAAATT+TGG - chr6_4:82706593-82706612 None:intergenic 20.0%
!! CATATAGGTAATTAAATTCA+TGG + chr6_4:82706674-82706693 Msa1000020:three_prime_UTR 20.0%
!!! AAAAAGTAGATTGGTAATTA+GGG - chr6_4:82706831-82706850 None:intergenic 20.0%
!!! AAAAAAGTAGATTGGTAATT+AGG - chr6_4:82706832-82706851 None:intergenic 20.0%
!! TTCACATTAAAAAAGTAGAT+TGG - chr6_4:82706840-82706859 None:intergenic 20.0%
!! CATTAGCAAAATATTTAAGA+TGG + chr6_4:82706882-82706901 Msa1000020:three_prime_UTR 20.0%
! AGATAGTAAACAAAGACAAA+AGG + chr6_4:82701359-82701378 Msa1000020:five_prime_UTR 25.0%
!! ATATTGAGGTTGATTAAGTA+GGG - chr6_4:82701454-82701473 None:intergenic 25.0%
! TTTCTACAAAGACATTGTTT+AGG + chr6_4:82701486-82701505 Msa1000020:five_prime_UTR 25.0%
! TTAGAAGGAGATGAAAATAA+AGG - chr6_4:82701724-82701743 None:intergenic 25.0%
! CAATCACTACTAAATTAGTA+AGG + chr6_4:82701894-82701913 Msa1000020:intron 25.0%
! ATCACTACTAAATTAGTAAG+GGG + chr6_4:82701896-82701915 Msa1000020:intron 25.0%
! AAAATTCAAACGTATGTGTT+TGG + chr6_4:82702217-82702236 Msa1000020:intron 25.0%
!!! AATTGTTTTTGGCTAATTGA+AGG + chr6_4:82702267-82702286 Msa1000020:intron 25.0%
!!! ATTGTTTTTGGCTAATTGAA+GGG + chr6_4:82702268-82702287 Msa1000020:intron 25.0%
! ACAATAGTAATATAGATGTG+AGG + chr6_4:82702492-82702511 Msa1000020:CDS 25.0%
! GAAAAAAAGCTTCTTCATTA+AGG + chr6_4:82702584-82702603 Msa1000020:intron 25.0%
!!! TTGTTTAAAGGTGCTAATAT+TGG - chr6_4:82702702-82702721 None:intergenic 25.0%
! ATTATATATGCAATCGTGAA+AGG + chr6_4:82702778-82702797 Msa1000020:intron 25.0%
! GATTTCAAGCTAAAAAAGAT+TGG - chr6_4:82702813-82702832 None:intergenic 25.0%
!!! TTTTAGCTTGAAATCATAAG+GGG + chr6_4:82702818-82702837 Msa1000020:intron 25.0%
! AAATTTCTTCATGTATTGTG+GGG + chr6_4:82702877-82702896 Msa1000020:intron 25.0%
! TTGTAGAATGAAAGAAATCT+TGG - chr6_4:82703146-82703165 None:intergenic 25.0%
! GAATAATTGCAATTGAGAAT+TGG - chr6_4:82703352-82703371 None:intergenic 25.0%
! ATTAATTACCTTTCCAAATG+GGG - chr6_4:82703574-82703593 None:intergenic 25.0%
!!! GTTTTTTTTGTTCCCTATTT+TGG - chr6_4:82703714-82703733 None:intergenic 25.0%
! AAATTAAAGGATCGTGTTAA+CGG - chr6_4:82704077-82704096 None:intergenic 25.0%
!!! TTTTCTGCATGATATTTTAG+AGG + chr6_4:82704244-82704263 Msa1000020:intron 25.0%
!!! TTTCTGCATGATATTTTAGA+GGG + chr6_4:82704245-82704264 Msa1000020:intron 25.0%
! TTGTTATGTGAAATGTGAAA+TGG - chr6_4:82704493-82704512 None:intergenic 25.0%
! TTGACCATATTAATTCTTAC+CGG - chr6_4:82704626-82704645 None:intergenic 25.0%
! CATTCAACAAATGATTTATG+TGG - chr6_4:82704842-82704861 None:intergenic 25.0%
! TAAGTAAAGTCAATCGAAAA+TGG - chr6_4:82704978-82704997 None:intergenic 25.0%
!!! ATTCCACTTTTCAGATAAAA+GGG - chr6_4:82705030-82705049 None:intergenic 25.0%
! GAATCGAACAAATGAATAAT+TGG - chr6_4:82705137-82705156 None:intergenic 25.0%
!! TGTTAATTAGAGGGTATAAA+TGG + chr6_4:82705204-82705223 Msa1000020:intron 25.0%
! TGCAAATACAACAATTATCA+TGG + chr6_4:82705426-82705445 Msa1000020:intron 25.0%
! CTAGTTTATGGATAATTATG+TGG + chr6_4:82705801-82705820 Msa1000020:intron 25.0%
!!! ACATTTCTCTTTAGTTCTAA+TGG - chr6_4:82705927-82705946 None:intergenic 25.0%
! TATTAAAAATCTGCTAAAGC+TGG - chr6_4:82705952-82705971 None:intergenic 25.0%
!!! AAACCCCTTCTTTTTTTTTA+GGG - chr6_4:82706011-82706030 None:intergenic 25.0%
!! TCTTCAAACCATTTTCATTT+AGG - chr6_4:82706129-82706148 None:intergenic 25.0%
! TAAATGAAAATGGTTTGAAG+AGG + chr6_4:82706128-82706147 Msa1000020:CDS 25.0%
! ATATATTCTAGCATGCATAT+AGG + chr6_4:82706659-82706678 Msa1000020:three_prime_UTR 25.0%
!! TAGCAAAATATTTAAGATGG+TGG + chr6_4:82706885-82706904 Msa1000020:three_prime_UTR 25.0%
TCAAAAATAAGTCCAACCAA+AGG + chr6_4:82701416-82701435 Msa1000020:five_prime_UTR 30.0%
CAAAAATAAGTCCAACCAAA+GGG + chr6_4:82701417-82701436 Msa1000020:five_prime_UTR 30.0%
! TATTGAGGTTGATTAAGTAG+GGG - chr6_4:82701453-82701472 None:intergenic 30.0%
! CATATTGAGGTTGATTAAGT+AGG - chr6_4:82701455-82701474 None:intergenic 30.0%
AAGAAAGTGAGAAAAGAGAA+AGG + chr6_4:82701523-82701542 Msa1000020:five_prime_UTR 30.0%
TATTGATGTTCCACCAATTA+GGG - chr6_4:82701672-82701691 None:intergenic 30.0%
TTATTGATGTTCCACCAATT+AGG - chr6_4:82701673-82701692 None:intergenic 30.0%
!! ATGAAGTTGGTGCATAATTA+GGG - chr6_4:82701756-82701775 None:intergenic 30.0%
AAAGGAAGAAAAGATGAAGT+TGG - chr6_4:82701769-82701788 None:intergenic 30.0%
! CTTTTCTTCCTTTTTCTTCA+TGG + chr6_4:82701776-82701795 Msa1000020:CDS 30.0%
! TTTTCATGCCATGAAGAAAA+AGG - chr6_4:82701787-82701806 None:intergenic 30.0%
TTAGTGACAAGAGATTTAGA+GGG + chr6_4:82701979-82701998 Msa1000020:intron 30.0%
! GACTTGTTCTATAACCATTA+TGG + chr6_4:82702067-82702086 Msa1000020:intron 30.0%
ACGTATGTGTTTGGTTAATT+AGG + chr6_4:82702226-82702245 Msa1000020:intron 30.0%
ATGTGTTTGGTTAATTAGGA+AGG + chr6_4:82702230-82702249 Msa1000020:intron 30.0%
!!! TTGTTTTTGGCTAATTGAAG+GGG + chr6_4:82702269-82702288 Msa1000020:intron 30.0%
TTTCAACAACAACAACATGT+TGG + chr6_4:82702457-82702476 Msa1000020:CDS 30.0%
ATTCATAAAAAGTCTAGCCA+TGG - chr6_4:82702612-82702631 None:intergenic 30.0%
CTCATTGACCAAGAAAAAAA+AGG - chr6_4:82702643-82702662 None:intergenic 30.0%
AGCATGGTAAAGTTGTTTAA+AGG - chr6_4:82702714-82702733 None:intergenic 30.0%
!! TTTAGCTTGAAATCATAAGG+GGG + chr6_4:82702819-82702838 Msa1000020:intron 30.0%
TACAACTCAAACTACTTTCA+AGG + chr6_4:82703220-82703239 Msa1000020:CDS 30.0%
ACAAACATACAAATACCATG+TGG + chr6_4:82703298-82703317 Msa1000020:intron 30.0%
CAAACATACAAATACCATGT+GGG + chr6_4:82703299-82703318 Msa1000020:intron 30.0%
AAACATACAAATACCATGTG+GGG + chr6_4:82703300-82703319 Msa1000020:intron 30.0%
AAGATATCATGAAAACGTGT+AGG - chr6_4:82703485-82703504 None:intergenic 30.0%
GATATCTTGTTCTCAATTTC+AGG + chr6_4:82703497-82703516 Msa1000020:intron 30.0%
!! TTCCCTATTTTGGATTTAGT+GGG - chr6_4:82703704-82703723 None:intergenic 30.0%
AATTAAAGGATCGTGTTAAC+GGG - chr6_4:82704076-82704095 None:intergenic 30.0%
! TTTATTTGCTACTACATTCG+AGG + chr6_4:82704094-82704113 Msa1000020:intron 30.0%
!! TTCTGCATGATATTTTAGAG+GGG + chr6_4:82704246-82704265 Msa1000020:intron 30.0%
ATATATAGAAAGTGGTGACT+AGG + chr6_4:82704298-82704317 Msa1000020:intron 30.0%
ATAATTCCAAGAGAGGAAAA+AGG - chr6_4:82704545-82704564 None:intergenic 30.0%
ACATCCGGTAAGAATTAATA+TGG + chr6_4:82704619-82704638 Msa1000020:intron 30.0%
! AAGTTTCTTACATTTGAGAC+CGG - chr6_4:82704768-82704787 None:intergenic 30.0%
ATCAGAGTTCAATTCTTAGA+TGG + chr6_4:82704950-82704969 Msa1000020:intron 30.0%
!! CATTCCACTTTTCAGATAAA+AGG - chr6_4:82705031-82705050 None:intergenic 30.0%
AAATTTCATGCTTAGCCATT+TGG - chr6_4:82705513-82705532 None:intergenic 30.0%
!! TTTAGTTCTAATGGATCCAA+AGG - chr6_4:82705918-82705937 None:intergenic 30.0%
GCTTCCCTAAAAAAAAAGAA+GGG + chr6_4:82706004-82706023 Msa1000020:intron 30.0%
CTTCCCTAAAAAAAAAGAAG+GGG + chr6_4:82706005-82706024 Msa1000020:intron 30.0%
!!! CAAACCCCTTCTTTTTTTTT+AGG - chr6_4:82706012-82706031 None:intergenic 30.0%
TTACAGCTCCTAAATGAAAA+TGG + chr6_4:82706118-82706137 Msa1000020:intron 30.0%
TTGCTGATGAAAATTAGACT+TGG - chr6_4:82706336-82706355 None:intergenic 30.0%
!! CTTATGTGTCTTTTTCATGT+TGG + chr6_4:82706412-82706431 Msa1000020:intron 30.0%
CATGTTGGCAATAACTAATT+AGG + chr6_4:82706427-82706446 Msa1000020:intron 30.0%
TATCATGTACACTACAAGTT+GGG + chr6_4:82706507-82706526 Msa1000020:CDS 30.0%
! ATCTAGCACACATTTTATTC+AGG - chr6_4:82706781-82706800 None:intergenic 30.0%
TTGCAAATACTAGTTCATCA+TGG - chr6_4:82706807-82706826 None:intergenic 30.0%
! ATTGAGGTTGATTAAGTAGG+GGG - chr6_4:82701452-82701471 None:intergenic 35.0%
! AACTTTGAGAGGTCATATTG+AGG - chr6_4:82701468-82701487 None:intergenic 35.0%
GTCTTTGTAGAAACTTTGAG+AGG - chr6_4:82701479-82701498 None:intergenic 35.0%
ATAAGCCATACCATGAATAG+AGG + chr6_4:82701604-82701623 Msa1000020:exon 35.0%
TTGAACAACACCTCTATTCA+TGG - chr6_4:82701617-82701636 None:intergenic 35.0%
GAAGGAGATGAAAATAAAGG+AGG - chr6_4:82701721-82701740 None:intergenic 35.0%
TTAGGGTTGAGAAAGTTAGA+AGG - chr6_4:82701739-82701758 None:intergenic 35.0%
!! GATGAAGTTGGTGCATAATT+AGG - chr6_4:82701757-82701776 None:intergenic 35.0%
GTTAGTGACAAGAGATTTAG+AGG + chr6_4:82701978-82701997 Msa1000020:intron 35.0%
TAGTGACAAGAGATTTAGAG+GGG + chr6_4:82701980-82701999 Msa1000020:intron 35.0%
!! ACATCAACAAGAGAAGCATT+TGG - chr6_4:82702365-82702384 None:intergenic 35.0%
GATGTTAAACAAGAAAGCTC+AGG + chr6_4:82702380-82702399 Msa1000020:CDS 35.0%
TCAGGAAATAGCTATGCATA+TGG + chr6_4:82702398-82702417 Msa1000020:CDS 35.0%
AATAGCTATGCATATGGACA+TGG + chr6_4:82702404-82702423 Msa1000020:CDS 35.0%
AGGTATAATGCAAACTTCCA+TGG + chr6_4:82703240-82703259 Msa1000020:intron 35.0%
ATGAAAGAGAGTTAAGGAGT+TGG - chr6_4:82703274-82703293 None:intergenic 35.0%
GTATGCATGAAAGAGAGTTA+AGG - chr6_4:82703280-82703299 None:intergenic 35.0%
GGAGTAACTATTGTCTTTCT+TGG + chr6_4:82703321-82703340 Msa1000020:intron 35.0%
AAGTGCACATGCTAAAAAGT+TGG - chr6_4:82703460-82703479 None:intergenic 35.0%
!! CTTGTTCTCAATTTCAGGTT+AGG + chr6_4:82703502-82703521 Msa1000020:intron 35.0%
!! TTCTCAATTTCAGGTTAGGA+AGG + chr6_4:82703506-82703525 Msa1000020:intron 35.0%
ATCCCCACTAAATCCAAAAT+AGG + chr6_4:82703698-82703717 Msa1000020:intron 35.0%
TCCCCACTAAATCCAAAATA+GGG + chr6_4:82703699-82703718 Msa1000020:intron 35.0%
!! TCCCTATTTTGGATTTAGTG+GGG - chr6_4:82703703-82703722 None:intergenic 35.0%
!! GTTCCCTATTTTGGATTTAG+TGG - chr6_4:82703705-82703724 None:intergenic 35.0%
TTACTAGTGCTTACTGCTTA+GGG - chr6_4:82703814-82703833 None:intergenic 35.0%
TTTACTAGTGCTTACTGCTT+AGG - chr6_4:82703815-82703834 None:intergenic 35.0%
AAAATGATATCGAGTGCTCT+TGG + chr6_4:82703915-82703934 Msa1000020:intron 35.0%
AAATGATATCGAGTGCTCTT+GGG + chr6_4:82703916-82703935 Msa1000020:intron 35.0%
!! TCTGCATGATATTTTAGAGG+GGG + chr6_4:82704247-82704266 Msa1000020:intron 35.0%
AATAGCTTCTAACAAGACAG+AGG - chr6_4:82704370-82704389 None:intergenic 35.0%
! TCTGTCTTGTTAGAAGCTAT+TGG + chr6_4:82704369-82704388 Msa1000020:CDS 35.0%
TGGTTATATCAGATTCCTTC+AGG + chr6_4:82704389-82704408 Msa1000020:CDS 35.0%
TGCTTGTGTTATGGTTGTTT+GGG - chr6_4:82704457-82704476 None:intergenic 35.0%
! TTCATTCCTTTTTCCTCTCT+TGG + chr6_4:82704536-82704555 Msa1000020:intron 35.0%
TCACTAAATAATACTCCCTC+CGG + chr6_4:82704746-82704765 Msa1000020:intron 35.0%
! TTTCTTACATTTGAGATCGG+AGG + chr6_4:82704880-82704899 Msa1000020:intron 35.0%
! TTCTTACATTTGAGATCGGA+GGG + chr6_4:82704881-82704900 Msa1000020:intron 35.0%
! GATCCCTTTTATCTGAAAAG+TGG + chr6_4:82705024-82705043 Msa1000020:intron 35.0%
!! TCATGCTCAACACTTTTTGT+AGG + chr6_4:82705591-82705610 Msa1000020:intron 35.0%
! AGTGTTGAGCAAGTTATCAA+GGG - chr6_4:82705634-82705653 None:intergenic 35.0%
!! AAGTGTTGAGCAAGTTATCA+AGG - chr6_4:82705635-82705654 None:intergenic 35.0%
! TGCAGAAACGTACTAGTTTA+TGG + chr6_4:82705789-82705808 Msa1000020:intron 35.0%
GGCTTCCCTAAAAAAAAAGA+AGG + chr6_4:82706003-82706022 Msa1000020:intron 35.0%
CTGATGAAAATTAGACTTGG+AGG - chr6_4:82706333-82706352 None:intergenic 35.0%
TTCTCAAGAAGAACCAAAGA+AGG + chr6_4:82706451-82706470 Msa1000020:CDS 35.0%
ACTTGTAGTGTACATGATAC+TGG - chr6_4:82706506-82706525 None:intergenic 35.0%
GTATCATGTACACTACAAGT+TGG + chr6_4:82706506-82706525 Msa1000020:CDS 35.0%
ATGACAATGGAGCTGATTAT+TGG + chr6_4:82706531-82706550 Msa1000020:CDS 35.0%
TGACAATGGAGCTGATTATT+GGG + chr6_4:82706532-82706551 Msa1000020:CDS 35.0%
CAACACCTCTATTCATGGTA+TGG - chr6_4:82701612-82701631 None:intergenic 40.0%
CTCTCCAGTTCAACAAATGA+TGG + chr6_4:82701639-82701658 Msa1000020:CDS 40.0%
! CTAGCCATCATTTGTTGAAC+TGG - chr6_4:82701646-82701665 None:intergenic 40.0%
TGATGGCTAGTAACCCTAAT+TGG + chr6_4:82701656-82701675 Msa1000020:CDS 40.0%
GGTGGAACATCAATAACATG+AGG + chr6_4:82701677-82701696 Msa1000020:CDS 40.0%
GAAAATAAAGGAGGAGGTTG+TGG - chr6_4:82701712-82701731 None:intergenic 40.0%
GGAGATGAAAATAAAGGAGG+AGG - chr6_4:82701718-82701737 None:intergenic 40.0%
!! TACATGAGTTGTTGACTCCA+TGG - chr6_4:82701829-82701848 None:intergenic 40.0%
TTGCAGCAAAATGGAGTAGT+GGG - chr6_4:82702135-82702154 None:intergenic 40.0%
ATTGCAGCAAAATGGAGTAG+TGG - chr6_4:82702136-82702155 None:intergenic 40.0%
!!! TTTTTGGCTAATTGAAGGGG+TGG + chr6_4:82702272-82702291 Msa1000020:intron 40.0%
TAATTGAAGGGGTGGAATTG+TGG + chr6_4:82702280-82702299 Msa1000020:intron 40.0%
AATTGAAGGGGTGGAATTGT+GGG + chr6_4:82702281-82702300 Msa1000020:intron 40.0%
GCTTCTTCATTAAGGATCCA+TGG + chr6_4:82702592-82702611 Msa1000020:intron 40.0%
TGTATTGTGGGGAAAAAGCT+TGG + chr6_4:82702888-82702907 Msa1000020:intron 40.0%
AAGTGCAACAGTACTACATC+TGG + chr6_4:82703164-82703183 Msa1000020:intron 40.0%
TGGGGCAATGAAAAAAGCTA+GGG + chr6_4:82703187-82703206 Msa1000020:CDS 40.0%
AATGATATCGAGTGCTCTTG+GGG + chr6_4:82703917-82703936 Msa1000020:intron 40.0%
!! CTGCATGATATTTTAGAGGG+GGG + chr6_4:82704248-82704267 Msa1000020:intron 40.0%
!! TGCATGATATTTTAGAGGGG+GGG + chr6_4:82704249-82704268 Msa1000020:intron 40.0%
!! TATTTTAGAGGGGGGGAAAA+AGG + chr6_4:82704256-82704275 Msa1000020:intron 40.0%
CTAGGAATATGACAGTGGTA+TGG + chr6_4:82704316-82704335 Msa1000020:intron 40.0%
ATTCCTTCAGGCTCAAATTG+AGG + chr6_4:82704401-82704420 Msa1000020:CDS 40.0%
GTGCTTGTGTTATGGTTGTT+TGG - chr6_4:82704458-82704477 None:intergenic 40.0%
TTAACAGCGTGCTTGTGTTA+TGG - chr6_4:82704466-82704485 None:intergenic 40.0%
TTCCTCTCTTGGAATTATGC+AGG + chr6_4:82704547-82704566 Msa1000020:intron 40.0%
AGCTTACCATACTTGGACAA+TGG + chr6_4:82704575-82704594 Msa1000020:CDS 40.0%
ACAATGGATCAGGAAACACA+AGG + chr6_4:82704591-82704610 Msa1000020:CDS 40.0%
AAACACAAGGCAACAACATC+CGG + chr6_4:82704604-82704623 Msa1000020:CDS 40.0%
! TTCTTACATTTGAGACCGGA+GGG - chr6_4:82704764-82704783 None:intergenic 40.0%
! TTTCTTACATTTGAGACCGG+AGG - chr6_4:82704765-82704784 None:intergenic 40.0%
GTGTTGAGCAAGTTATCAAG+GGG - chr6_4:82705633-82705652 None:intergenic 40.0%
CTACTCTTTAGGTCCTTCTT+TGG - chr6_4:82706467-82706486 None:intergenic 40.0%
AAGAAGGACCTAAAGAGTAG+AGG + chr6_4:82706467-82706486 Msa1000020:CDS 40.0%
AGAAGGACCTAAAGAGTAGA+GGG + chr6_4:82706468-82706487 Msa1000020:CDS 40.0%
! CTACAAGTTGGGAATGACAA+TGG + chr6_4:82706518-82706537 Msa1000020:CDS 40.0%
ATCTGCTCAAAAACCTACCA+AGG + chr6_4:82706724-82706743 Msa1000020:three_prime_UTR 40.0%
ATAAGTCCAACCAAAGGGTG+TGG + chr6_4:82701422-82701441 Msa1000020:five_prime_UTR 45.0%
TGGCTAGTAACCCTAATTGG+TGG + chr6_4:82701659-82701678 Msa1000020:CDS 45.0%
!! AGTTGTTGACTCCATGGTTC+GGG - chr6_4:82701823-82701842 None:intergenic 45.0%
!! GAGTTGTTGACTCCATGGTT+CGG - chr6_4:82701824-82701843 None:intergenic 45.0%
CCAGCTCAATTGCAGCAAAA+TGG - chr6_4:82702144-82702163 None:intergenic 45.0%
! CCATTTTGCTGCAATTGAGC+TGG + chr6_4:82702141-82702160 Msa1000020:intron 45.0%
GTGGGAGAGGAAGATAAGAT+TGG + chr6_4:82702299-82702318 Msa1000020:CDS 45.0%
TCAGAAGATCGATCTAGTGG+TGG - chr6_4:82702521-82702540 None:intergenic 45.0%
ACCACTAGATCGATCTTCTG+AGG + chr6_4:82702520-82702539 Msa1000020:CDS 45.0%
ACCTCAGAAGATCGATCTAG+TGG - chr6_4:82702524-82702543 None:intergenic 45.0%
TGCAACAGTACTACATCTGG+TGG + chr6_4:82703167-82703186 Msa1000020:CDS 45.0%
GCAACAGTACTACATCTGGT+GGG + chr6_4:82703168-82703187 Msa1000020:CDS 45.0%
CAACAGTACTACATCTGGTG+GGG + chr6_4:82703169-82703188 Msa1000020:CDS 45.0%
GTGGGGCAATGAAAAAAGCT+AGG + chr6_4:82703186-82703205 Msa1000020:CDS 45.0%
AGGAGTTGGAAGTTTCTCCA+TGG - chr6_4:82703260-82703279 None:intergenic 45.0%
GACAATAGTTACTCCCCACA+TGG - chr6_4:82703316-82703335 None:intergenic 45.0%
CAGGTTAGGAAGGAGAAGTT+AGG + chr6_4:82703516-82703535 Msa1000020:intron 45.0%
TGGGGAAACAAGCTGATGAA+GGG - chr6_4:82703556-82703575 None:intergenic 45.0%
ATGGGGAAACAAGCTGATGA+AGG - chr6_4:82703557-82703576 None:intergenic 45.0%
! CATCAGCTTGTTTCCCCATT+TGG + chr6_4:82703558-82703577 Msa1000020:CDS 45.0%
GCTTGTTTCCCCATTTGGAA+AGG + chr6_4:82703563-82703582 Msa1000020:CDS 45.0%
GGTGACTAGGAATATGACAG+TGG + chr6_4:82704311-82704330 Msa1000020:intron 45.0%
TCACCTCAATTTGAGCCTGA+AGG - chr6_4:82704407-82704426 None:intergenic 45.0%
AGCCTGCATAATTCCAAGAG+AGG - chr6_4:82704552-82704571 None:intergenic 45.0%
GGCTCTTAGCTTACCATACT+TGG + chr6_4:82704568-82704587 Msa1000020:intron 45.0%
CCTGATCCATTGTCCAAGTA+TGG - chr6_4:82704584-82704603 None:intergenic 45.0%
CCATACTTGGACAATGGATC+AGG + chr6_4:82704581-82704600 Msa1000020:CDS 45.0%
TGTTTATTCCCTGAAGACCC+TGG + chr6_4:82705883-82705902 Msa1000020:CDS 45.0%
TCCAAAGGATTACCTGACCA+GGG - chr6_4:82705903-82705922 None:intergenic 45.0%
ATCCAAAGGATTACCTGACC+AGG - chr6_4:82705904-82705923 None:intergenic 45.0%
GACACAACCCTCTACTCTTT+AGG - chr6_4:82706478-82706497 None:intergenic 45.0%
!!! TTATTAATTTTTCTATAATA+TGG + chr6_4:82702039-82702058 Msa1000020:intron 5.0%
!!! TTAAATTACTTTATTATTTT+TGG + chr6_4:82703089-82703108 Msa1000020:intron 5.0%
!! TAATTAAATAATTGAATTAA+TGG + chr6_4:82704713-82704732 Msa1000020:intron 5.0%
AAAGGAGGAGGTTGTGGAGA+TGG - chr6_4:82701706-82701725 None:intergenic 50.0%
ATCAAGAGCTTCCCGAACCA+TGG + chr6_4:82701809-82701828 Msa1000020:CDS 50.0%
!! TGCTCTTGGGGCACTGTTTA+AGG + chr6_4:82703929-82703948 Msa1000020:intron 50.0%
!! GCTCTTGGGGCACTGTTTAA+GGG + chr6_4:82703930-82703949 Msa1000020:intron 50.0%
TTACCTGACCAGGGTCTTCA+GGG - chr6_4:82705894-82705913 None:intergenic 50.0%
ATTACCTGACCAGGGTCTTC+AGG - chr6_4:82705895-82705914 None:intergenic 50.0%
ACCCTGGTCAGGTAATCCTT+TGG + chr6_4:82705899-82705918 Msa1000020:intron 50.0%
GAAGAGGAAAGCAGCTGAAG+AGG + chr6_4:82706144-82706163 Msa1000020:CDS 50.0%
CATGAGCAATCAGCCTTGGT+AGG - chr6_4:82706740-82706759 None:intergenic 50.0%
GCATCATGAGCAATCAGCCT+TGG - chr6_4:82706744-82706763 None:intergenic 50.0%
AAGGGGTGGAATTGTGGGAG+AGG + chr6_4:82702286-82702305 Msa1000020:intron 55.0%
ATTCCCTGAAGACCCTGGTC+AGG + chr6_4:82705888-82705907 Msa1000020:CDS 55.0%
GATTATTGGGCACCTGCCCT+AGG + chr6_4:82706545-82706564 Msa1000020:CDS 55.0%
! GGAGCACCACACCCTTTGGT+TGG - chr6_4:82701431-82701450 None:intergenic 60.0%
GGAGGAGGTTGTGGAGATGG+TGG - chr6_4:82701703-82701722 None:intergenic 60.0%
TATTGGGCACCTGCCCTAGG+AGG + chr6_4:82706548-82706567 Msa1000020:CDS 60.0%
CCGAAAGCCTCCTCCTCCTA+GGG - chr6_4:82706564-82706583 None:intergenic 60.0%
CCCTAGGAGGAGGAGGCTTT+CGG + chr6_4:82706561-82706580 Msa1000020:CDS 60.0%
ACCGAAAGCCTCCTCCTCCT+AGG - chr6_4:82706565-82706584 None:intergenic 60.0%
!! AGGGGGAGCACCACACCCTT+TGG - chr6_4:82701435-82701454 None:intergenic 65.0%
AAGCCTCCTCCTCCTAGGGC+AGG - chr6_4:82706560-82706579 None:intergenic 65.0%
TGGGCACCTGCCCTAGGAGG+AGG + chr6_4:82706551-82706570 Msa1000020:CDS 70.0%
GCACCTGCCCTAGGAGGAGG+AGG + chr6_4:82706554-82706573 Msa1000020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 82701314 82706964 82701314 ID=Msa1000020;Name=Msa1000020
chr6_4 mRNA 82701314 82706964 82701314 ID=Msa1000020-mRNA-1;Parent=Msa1000020;Name=Msa1000020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=302|1|1|1|0.88|0.8|10|357|323
chr6_4 exon 82701314 82701845 82701314 ID=Msa1000020-mRNA-1:exon:15925;Parent=Msa1000020-mRNA-1
chr6_4 exon 82702289 82702541 82702289 ID=Msa1000020-mRNA-1:exon:15926;Parent=Msa1000020-mRNA-1
chr6_4 exon 82703167 82703241 82703167 ID=Msa1000020-mRNA-1:exon:15927;Parent=Msa1000020-mRNA-1
chr6_4 exon 82703519 82703584 82703519 ID=Msa1000020-mRNA-1:exon:15928;Parent=Msa1000020-mRNA-1
chr6_4 exon 82704357 82704422 82704357 ID=Msa1000020-mRNA-1:exon:15929;Parent=Msa1000020-mRNA-1
chr6_4 exon 82704569 82704625 82704569 ID=Msa1000020-mRNA-1:exon:15930;Parent=Msa1000020-mRNA-1
chr6_4 exon 82705865 82705909 82705865 ID=Msa1000020-mRNA-1:exon:15931;Parent=Msa1000020-mRNA-1
chr6_4 exon 82706124 82706165 82706124 ID=Msa1000020-mRNA-1:exon:15932;Parent=Msa1000020-mRNA-1
chr6_4 exon 82706449 82706836 82706449 ID=Msa1000020-mRNA-1:exon:15933;Parent=Msa1000020-mRNA-1
chr6_4 exon 82706858 82706964 82706858 ID=Msa1000020-mRNA-1:exon:15934;Parent=Msa1000020-mRNA-1
chr6_4 five_prime_UTR 82701314 82701615 82701314 ID=Msa1000020-mRNA-1:five_prime_utr;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82701616 82701845 82701616 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82702289 82702541 82702289 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82703167 82703241 82703167 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82703519 82703584 82703519 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82704357 82704422 82704357 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82704569 82704625 82704569 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82705865 82705909 82705865 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82706124 82706165 82706124 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 CDS 82706449 82706586 82706449 ID=Msa1000020-mRNA-1:cds;Parent=Msa1000020-mRNA-1
chr6_4 three_prime_UTR 82706587 82706836 82706587 ID=Msa1000020-mRNA-1:three_prime_utr;Parent=Msa1000020-mRNA-1
chr6_4 three_prime_UTR 82706858 82706964 82706858 ID=Msa1000020-mRNA-1:three_prime_utr;Parent=Msa1000020-mRNA-1
Gene Sequence

>Msa1000020

ATGAATAGAGGTGTTGTTCAAAGCTCTCCAGTTCAACAAATGATGGCTAGTAACCCTAATTGGTGGAACATCAATAACATGAGGCCACCATCTCCACAACCTCCTCCTTTATTTTCATCTCCTTCTAACTTTCTCAACCCTAATTATGCACCAACTTCATCTTTTCTTCCTTTTTCTTCATGGCATGAAAATCATCAAGAGCTTCCCGAACCATGGAGTCAACAACTCATGGGTGGAATTGTGGGAGAGGAAGATAAGATTGGTATGAGCCAATTTCAAAATCAAATGCTAATAAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAGCTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTGACAAGTTTCAACAACAACAACATGTTGGATTTCACTAACAACAATAGTAATATAGATGTGAGGCATCCACCACTAGATCGATCTTCTGAGTGCAACAGTACTACATCTGGTGGGGCAATGAAAAAAGCTAGGGTTCAACAATCTACAACTCAAACTACTTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAGCTTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGGCTCAAATTGAGGCTCTTAGCTTACCATACTTGGACAATGGATCAGGAAACACAAGGCAACAACATCCGGTTCAAGGAGAGAATAATTGTTTATTCCCTGAAGACCCTGGTCAGCTCCTAAATGAAAATGGTTTGAAGAGGAAAGCAGCTGAAGAGGTTTCTCAAGAAGAACCAAAGAAGGACCTAAAGAGTAGAGGGTTGTGTCTTGTTCCAGTATCATGTACACTACAAGTTGGGAATGACAATGGAGCTGATTATTGGGCACCTGCCCTAGGAGGAGGAGGCTTTCGGTAG

Protein sequence

>Msa1000020

MNRGVVQSSPVQQMMASNPNWWNINNMRPPSPQPPPLFSSPSNFLNPNYAPTSSFLPFSSWHENHQELPEPWSQQLMGGIVGEEDKIGMSQFQNQMLISQAPNASLVDVKQESSGNSYAYGHGNEELNSCVTSFNNNNMLDFTNNNSNIDVRHPPLDRSSECNSTTSGGAMKKARVQQSTTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQAQIEALSLPYLDNGSGNTRQQHPVQGENNCLFPEDPGQLLNENGLKRKAAEEVSQEEPKKDLKSRGLCLVPVSCTLQVGNDNGADYWAPALGGGGFR*