Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508580 | XP_003600847.1 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.15e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508580 | sp|Q9M047|WLI2B_ARATH | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.38e-112 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508580 | B7FME7 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 5.49e-138 | 392 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0508580 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089080 | Msa0508580 | 0.800812 | 1.209172e-48 | -8.615850e-47 |
| Msa0102130 | Msa0508580 | -0.806854 | 6.718939e-50 | -8.615850e-47 |
| Msa0188500 | Msa0508580 | -0.835463 | 1.653481e-56 | -8.615850e-47 |
| Msa0200840 | Msa0508580 | -0.812560 | 3.986867e-51 | -8.615850e-47 |
| Msa0200870 | Msa0508580 | -0.804499 | 2.098053e-49 | -8.615850e-47 |
| Msa0223190 | Msa0508580 | -0.829355 | 5.392393e-55 | -8.615850e-47 |
| Msa0230980 | Msa0508580 | -0.830516 | 2.810280e-55 | -8.615850e-47 |
| Msa0378700 | Msa0508580 | -0.804972 | 1.671254e-49 | -8.615850e-47 |
| Msa0416390 | Msa0508580 | 0.860898 | 1.498020e-63 | -8.615850e-47 |
| Msa0437540 | Msa0508580 | 0.808466 | 3.055407e-50 | -8.615850e-47 |
| Msa0448400 | Msa0508580 | -0.802366 | 5.804961e-49 | -8.615850e-47 |
| Msa0462980 | Msa0508580 | 0.982975 | 1.702384e-156 | -8.615850e-47 |
| Msa0476540 | Msa0508580 | 0.808191 | 3.496329e-50 | -8.615850e-47 |
| Msa0243470 | Msa0508580 | -0.800802 | 1.214685e-48 | -8.615850e-47 |
| Msa0264420 | Msa0508580 | -0.830828 | 2.356419e-55 | -8.615850e-47 |
| Msa0270460 | Msa0508580 | -0.831050 | 2.079070e-55 | -8.615850e-47 |
| Msa0282500 | Msa0508580 | -0.800273 | 1.557270e-48 | -8.615850e-47 |
| Msa0302310 | Msa0508580 | -0.817390 | 3.380550e-52 | -8.615850e-47 |
| Msa0309060 | Msa0508580 | -0.818799 | 1.622923e-52 | -8.615850e-47 |
| Msa0339670 | Msa0508580 | -0.825832 | 3.779930e-54 | -8.615850e-47 |
| Msa0341190 | Msa0508580 | -0.801528 | 8.627634e-49 | -8.615850e-47 |
| Msa0508580 | Msa0521940 | 0.804146 | 2.485287e-49 | -8.615850e-47 |
| Msa0508580 | Msa0643020 | 0.802648 | 5.077444e-49 | -8.615850e-47 |
| Msa0508580 | Msa0705050 | -0.826708 | 2.339537e-54 | -8.615850e-47 |
| Msa0508580 | Msa0736500 | 0.811133 | 8.152985e-51 | -8.615850e-47 |
| Msa0508580 | Msa0815590 | 0.802865 | 4.580650e-49 | -8.615850e-47 |
| Msa0508580 | Msa0861560 | -0.800046 | 1.731701e-48 | -8.615850e-47 |
| Msa0508580 | Msa0899730 | -0.808667 | 2.767206e-50 | -8.615850e-47 |
| Msa0508580 | Msa0975560 | -0.805213 | 1.487877e-49 | -8.615850e-47 |
| Msa0508580 | Msa0982590 | -0.806586 | 7.653507e-50 | -8.615850e-47 |
| Msa0508580 | Msa1012520 | 0.802586 | 5.228468e-49 | -8.615850e-47 |
| Msa0508580 | Msa1053990 | 0.839228 | 1.796624e-57 | -8.615850e-47 |
| Msa0508580 | Msa1102180 | -0.817589 | 3.049582e-52 | -8.615850e-47 |
| Msa0508580 | Msa1141250 | 0.819869 | 9.260795e-53 | -8.615850e-47 |
| Msa0508580 | Msa1211260 | -0.806680 | 7.314731e-50 | -8.615850e-47 |
| Msa0508580 | Msa1211390 | -0.824051 | 9.952107e-54 | -8.615850e-47 |
| Msa0508580 | Msa1240060 | 0.844054 | 9.585968e-59 | -8.615850e-47 |
| Msa0508580 | Msa1242990 | -0.807754 | 4.331663e-50 | -8.615850e-47 |
| Msa0508580 | Msa1281370 | 0.826308 | 2.912783e-54 | -8.615850e-47 |
| Msa0508580 | Msa1306700 | -0.822230 | 2.647153e-53 | -8.615850e-47 |
| Msa0508580 | Msa1320530 | 0.840821 | 6.902094e-58 | -8.615850e-47 |
| Msa0508580 | Msa1323920 | -0.818455 | 1.942932e-52 | -8.615850e-47 |
| Msa0508580 | Msa1342400 | -0.807675 | 4.501398e-50 | -8.615850e-47 |
| Msa0508580 | Msa1370630 | -0.802394 | 5.729172e-49 | -8.615850e-47 |
| Msa0508580 | Msa1413900 | -0.814558 | 1.448904e-51 | -8.615850e-47 |
| Msa0508580 | Msa1427180 | -0.833797 | 4.338263e-56 | -8.615850e-47 |
| Msa0508580 | Msa1460970 | 0.825893 | 3.657054e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508580 | MtrunA17_Chr3g0113051 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.06e-141 | 392 |
| Msa0508580 | MtrunA17_Chr7g0247111 | 62.295 | 183 | 65 | 2 | 1 | 183 | 1 | 179 | 3.69e-85 | 250 |
| Msa0508580 | MtrunA17_Chr8g0349391 | 64.246 | 179 | 58 | 2 | 1 | 179 | 1 | 173 | 3.09e-83 | 245 |
| Msa0508580 | MtrunA17_Chr8g0386501 | 59.563 | 183 | 66 | 1 | 1 | 183 | 1 | 175 | 2.26e-75 | 225 |
| Msa0508580 | MtrunA17_Chr1g0152431 | 58.757 | 177 | 69 | 2 | 1 | 175 | 1 | 175 | 2.28e-70 | 212 |
| Msa0508580 | MtrunA17_Chr4g0059371 | 53.591 | 181 | 81 | 2 | 2 | 181 | 3 | 181 | 8.68e-67 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508580 | AT3G55770.3 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.50e-113 | 320 |
| Msa0508580 | AT3G55770.5 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.50e-113 | 320 |
| Msa0508580 | AT3G55770.2 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.50e-113 | 320 |
| Msa0508580 | AT3G55770.1 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.50e-113 | 320 |
| Msa0508580 | AT2G39900.1 | 82.609 | 184 | 29 | 2 | 1 | 183 | 1 | 182 | 5.46e-110 | 313 |
| Msa0508580 | AT2G39900.1 | 45.455 | 88 | 48 | 0 | 103 | 190 | 3 | 90 | 5.89e-22 | 89.0 |
| Msa0508580 | AT3G55770.7 | 70.642 | 218 | 28 | 2 | 1 | 184 | 1 | 216 | 5.53e-105 | 301 |
| Msa0508580 | AT3G55770.7 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 6.92e-22 | 89.4 |
| Msa0508580 | AT2G45800.1 | 64.706 | 187 | 62 | 2 | 1 | 187 | 1 | 183 | 1.66e-85 | 251 |
| Msa0508580 | AT1G01780.1 | 61.290 | 186 | 66 | 3 | 1 | 186 | 1 | 180 | 6.31e-83 | 244 |
| Msa0508580 | AT1G01780.1 | 49.425 | 87 | 44 | 0 | 3 | 89 | 97 | 183 | 1.79e-23 | 92.8 |
| Msa0508580 | AT3G61230.1 | 59.890 | 182 | 69 | 2 | 2 | 183 | 3 | 180 | 3.72e-80 | 238 |
| Msa0508580 | AT1G10200.1 | 59.322 | 177 | 68 | 2 | 1 | 175 | 1 | 175 | 2.69e-72 | 217 |
| Msa0508580 | AT3G55770.4 | 74.074 | 135 | 32 | 2 | 1 | 135 | 1 | 132 | 4.78e-67 | 202 |
| Msa0508580 | AT3G55770.4 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 2.93e-23 | 90.5 |
| Msa0508580 | AT3G55770.6 | 72.388 | 134 | 35 | 1 | 1 | 134 | 1 | 132 | 1.06e-64 | 196 |
| Msa0508580 | AT3G55770.6 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 1.77e-23 | 90.9 |
| Msa0508580 | AT2G45800.2 | 61.688 | 154 | 54 | 3 | 34 | 187 | 4 | 152 | 1.00e-60 | 187 |
| Msa0508580 | AT2G45800.2 | 56.338 | 71 | 31 | 0 | 3 | 73 | 68 | 138 | 2.76e-22 | 89.7 |
| Msa0508580 | AT1G10200.2 | 54.135 | 133 | 57 | 2 | 45 | 175 | 3 | 133 | 9.65e-46 | 148 |
| Msa0508580 | AT1G10200.2 | 52.778 | 72 | 34 | 0 | 3 | 74 | 61 | 132 | 9.92e-21 | 84.3 |
Find 68 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTTTCAGTTTCAGAAAA+TGG | 0.258949 | 3_4:+56684567 | None:intergenic |
| TCACTGCAAAGGAACTTTAA+AGG | 0.270879 | 3_4:-56684325 | Msa0508580:intron |
| AGCATCTGAAACAAGCTTTA+TGG | 0.273670 | 3_4:+56684349 | None:intergenic |
| GCATAATTTGATGGAGTTAT+AGG | 0.293254 | 3_4:+56681444 | None:intergenic |
| TGAAAATTACATCATCAAAT+TGG | 0.299512 | 3_4:+56681059 | None:intergenic |
| GGCACCAACATTCAAGATTC+TGG | 0.320266 | 3_4:+56681306 | None:intergenic |
| ACTAAGGAGATGAATATAAA+TGG | 0.322282 | 3_4:+56684811 | None:intergenic |
| GAATTATTACCTTTGTGAAT+TGG | 0.341513 | 3_4:+56684722 | None:intergenic |
| TGTGAATTGGAAGTGATAAA+TGG | 0.344874 | 3_4:+56684735 | None:intergenic |
| TAGGGAATGAAATGAATTAA+TGG | 0.347974 | 3_4:+56684631 | None:intergenic |
| TTAATGGTATAAAGTTGAAA+TGG | 0.372822 | 3_4:+56684647 | None:intergenic |
| TTCATCTCCTTAGTCTTAAC+CGG | 0.373802 | 3_4:-56684802 | Msa0508580:five_prime_UTR |
| CTTGAAACATGATTTGTGAT+AGG | 0.385052 | 3_4:+56681485 | None:intergenic |
| GTTGATCAGCTTTCTGCTGA+TGG | 0.412406 | 3_4:-56684381 | Msa0508580:CDS |
| TCAGCAGAAAGCTGATCAAC+GGG | 0.417066 | 3_4:+56684384 | None:intergenic |
| TAATGGTATAAAGTTGAAAT+GGG | 0.425963 | 3_4:+56684648 | None:intergenic |
| TCAAATTATGCAGCCCTTGA+GGG | 0.436930 | 3_4:-56681432 | Msa0508580:CDS |
| GAACAAAGGCAATAATTAGA+AGG | 0.437664 | 3_4:+56681285 | None:intergenic |
| TCTTGTGTGATTTATTTATC+CGG | 0.437808 | 3_4:-56681130 | Msa0508580:three_prime_UTR |
| TCAAGGGCTGCATAATTTGA+TGG | 0.451254 | 3_4:+56681435 | None:intergenic |
| AGAGTCTCCGGTTAAGACTA+AGG | 0.458647 | 3_4:+56684795 | None:intergenic |
| TGGTGGATCGGTGAAGATAG+AGG | 0.464680 | 3_4:+56684755 | None:intergenic |
| ATGCAAGGCTTGTGAGAAAA+CGG | 0.479151 | 3_4:-56684412 | Msa0508580:CDS |
| GCTTAGCAGCTATTCATCAA+TGG | 0.481021 | 3_4:-56683124 | Msa0508580:CDS |
| TGTCTCTATATAACAGCATT+CGG | 0.488985 | 3_4:+56681024 | None:intergenic |
| TCACACAAAGTTAGAGTCTC+CGG | 0.498691 | 3_4:+56684783 | None:intergenic |
| CAAGCAAGTGTTTGTATGTG+TGG | 0.499680 | 3_4:-56681231 | Msa0508580:three_prime_UTR |
| AACATGCCCGCAGCTTTGCT+AGG | 0.502670 | 3_4:+56682779 | None:intergenic |
| TCAAGCAAATTTACCAGCAC+AGG | 0.506130 | 3_4:+56682895 | None:intergenic |
| TGCAATACAAAATGCCCTCA+AGG | 0.513427 | 3_4:+56681418 | None:intergenic |
| ATCAAATTATGCAGCCCTTG+AGG | 0.523435 | 3_4:-56681433 | Msa0508580:CDS |
| TTAAATCTTACCTTCTCCAA+TGG | 0.527191 | 3_4:+56682710 | None:intergenic |
| TGGCAAAACTGCTTATCCAT+TGG | 0.531481 | 3_4:-56682726 | Msa0508580:CDS |
| GTAGGTAACAGTCGAAAGCC+AGG | 0.532163 | 3_4:-56681508 | Msa0508580:intron |
| CGTTCCAGAATCTTGAATGT+TGG | 0.533855 | 3_4:-56681310 | Msa0508580:exon |
| ACATGCCCGCAGCTTTGCTA+GGG | 0.534302 | 3_4:+56682780 | None:intergenic |
| GAGCAGCTCTTCAAGGAGCA+TGG | 0.538709 | 3_4:-56683072 | Msa0508580:CDS |
| TTGAAGAGCTGCTCAAAATG+AGG | 0.540372 | 3_4:+56683081 | None:intergenic |
| GGTGATAACGAGTCATATCA+TGG | 0.544058 | 3_4:+56684832 | None:intergenic |
| TAATGATGGAACAATTATGA+AGG | 0.552601 | 3_4:+56681198 | None:intergenic |
| GATGTTTACTTATACATGTG+TGG | 0.562737 | 3_4:-56681161 | Msa0508580:three_prime_UTR |
| AGGACCCCTAGCAAAGCTGC+GGG | 0.566248 | 3_4:-56682785 | Msa0508580:CDS |
| ATCAGCAGAAAGCTGATCAA+CGG | 0.568175 | 3_4:+56684383 | None:intergenic |
| GGTGGATCGGTGAAGATAGA+GGG | 0.571433 | 3_4:+56684756 | None:intergenic |
| TGACGGTACAACTCCTGTGC+TGG | 0.573159 | 3_4:-56682908 | Msa0508580:intron |
| TTCAGATGCTCTCACTGCAA+AGG | 0.579144 | 3_4:-56684336 | Msa0508580:CDS |
| AACTGCTTATCCATTGGAGA+AGG | 0.581461 | 3_4:-56682720 | Msa0508580:intron |
| CTTCTTTCAAAACAGAACAA+AGG | 0.583366 | 3_4:+56681271 | None:intergenic |
| GCTGTTATATAGAGACACCT+TGG | 0.591288 | 3_4:-56681018 | Msa0508580:three_prime_UTR |
| GTTATATAGAGACACCTTGG+AGG | 0.593268 | 3_4:-56681015 | Msa0508580:three_prime_UTR |
| CATTCAAGATTCTGGAACGG+AGG | 0.593798 | 3_4:+56681314 | None:intergenic |
| TCATGTTTCAAGTGTTCACA+TGG | 0.595518 | 3_4:-56681474 | Msa0508580:CDS |
| GCAATACAAAATGCCCTCAA+GGG | 0.597362 | 3_4:+56681419 | None:intergenic |
| TGTCAGTACTGAATGTTCAC+CGG | 0.600445 | 3_4:+56681111 | None:intergenic |
| AAGGACCCCTAGCAAAGCTG+CGG | 0.600940 | 3_4:-56682786 | Msa0508580:CDS |
| AGCAGCTATTCATCAATGGA+AGG | 0.620240 | 3_4:-56683120 | Msa0508580:CDS |
| GGAAGTGATAAATGGTGGAT+CGG | 0.629183 | 3_4:+56684743 | None:intergenic |
| CAAGAAAAGTGTGCTACATG+TGG | 0.644472 | 3_4:-56682746 | Msa0508580:CDS |
| TTATCACTTCCAATTCACAA+AGG | 0.653877 | 3_4:-56684731 | Msa0508580:five_prime_UTR |
| AACATGATTTGTGATAGGCC+TGG | 0.655676 | 3_4:+56681490 | None:intergenic |
| GAATTGGAAGTGATAAATGG+TGG | 0.668790 | 3_4:+56684738 | None:intergenic |
| CAACATTCAAGATTCTGGAA+CGG | 0.669244 | 3_4:+56681311 | None:intergenic |
| TGTTTCAAGTGTTCACATGG+TGG | 0.677869 | 3_4:-56681471 | Msa0508580:CDS |
| CATGCCCGCAGCTTTGCTAG+GGG | 0.687636 | 3_4:+56682781 | None:intergenic |
| ACAGCTGCAAAGGTAGCTGA+CGG | 0.690921 | 3_4:-56682925 | Msa0508580:intron |
| ACTGAATTTCAAAATGCACA+AGG | 0.735629 | 3_4:+56684491 | None:intergenic |
| GAATTTCAAAATGCACAAGG+TGG | 0.740404 | 3_4:+56684494 | None:intergenic |
| CAGCAGAAAGCTGATCAACG+GGG | 0.750219 | 3_4:+56684385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATGTTTATGATAT+TGG | - | chr3_4:56681533-56681552 | Msa0508580:intron | 10.0% |
| !!! | TAAAAAAGAAGTATATGAAT+TGG | + | chr3_4:56681080-56681099 | None:intergenic | 15.0% |
| !!! | TTTTTATTGTTCTTTTAATC+CGG | - | chr3_4:56682912-56682931 | Msa0508580:CDS | 15.0% |
| !! | TAATGGTATAAAGTTGAAAT+GGG | + | chr3_4:56681132-56681151 | None:intergenic | 20.0% |
| !! | TTAATGGTATAAAGTTGAAA+TGG | + | chr3_4:56681133-56681152 | None:intergenic | 20.0% |
| !! | TATATTTAGACATATGAAAG+TGG | - | chr3_4:56681684-56681703 | Msa0508580:intron | 20.0% |
| !! | ATATTTAGACATATGAAAGT+GGG | - | chr3_4:56681685-56681704 | Msa0508580:intron | 20.0% |
| !! | AAACTAAACTTGAAAGATTA+TGG | + | chr3_4:56682095-56682114 | None:intergenic | 20.0% |
| !!! | AAGTTTAGTTTCTCAAATAT+TGG | - | chr3_4:56682104-56682123 | Msa0508580:intron | 20.0% |
| !!! | TAAAGTTTGAATTTTTCACA+AGG | - | chr3_4:56682603-56682622 | Msa0508580:intron | 20.0% |
| !! | AAAATTATTGCCAATTAAAG+AGG | + | chr3_4:56682825-56682844 | None:intergenic | 20.0% |
| !! | AAGGTAAGATTTAAAAATCT+TGG | - | chr3_4:56683076-56683095 | Msa0508580:CDS | 20.0% |
| !! | ACTAAAGATACTTATTCTTA+TGG | + | chr3_4:56683165-56683184 | None:intergenic | 20.0% |
| !!! | CATATTGATGTTAAATGTTT+TGG | + | chr3_4:56683255-56683274 | None:intergenic | 20.0% |
| !! | ATATGACTTCATTATCTTAT+TGG | - | chr3_4:56683500-56683519 | Msa0508580:intron | 20.0% |
| !! | TATGACTTCATTATCTTATT+GGG | - | chr3_4:56683501-56683520 | Msa0508580:intron | 20.0% |
| !!! | CTTCAATTTCATGTTTTTTA+AGG | + | chr3_4:56683604-56683623 | None:intergenic | 20.0% |
| !! | AGTAATTAGATTTACTCATT+CGG | + | chr3_4:56684162-56684181 | None:intergenic | 20.0% |
| !! | AGAAAAATGATAAGTAATGA+TGG | + | chr3_4:56684596-56684615 | None:intergenic | 20.0% |
| !! | TGAAAATTACATCATCAAAT+TGG | + | chr3_4:56684721-56684740 | None:intergenic | 20.0% |
| ! | ACTAAGGAGATGAATATAAA+TGG | + | chr3_4:56680969-56680988 | None:intergenic | 25.0% |
| ! | GAATTATTACCTTTGTGAAT+TGG | + | chr3_4:56681058-56681077 | None:intergenic | 25.0% |
| ! | GGGAATTAAAGTATATGAAT+TGG | + | chr3_4:56681112-56681131 | None:intergenic | 25.0% |
| ! | TAGGGAATGAAATGAATTAA+TGG | + | chr3_4:56681149-56681168 | None:intergenic | 25.0% |
| ! | AAGCTAAAAAGTAGAGAATA+GGG | + | chr3_4:56681167-56681186 | None:intergenic | 25.0% |
| ! | AAAGCTAAAAAGTAGAGAAT+AGG | + | chr3_4:56681168-56681187 | None:intergenic | 25.0% |
| ! | TTCAGAAAATGGTGAAAAAA+GGG | + | chr3_4:56681202-56681221 | None:intergenic | 25.0% |
| ! | TTTCAGAAAATGGTGAAAAA+AGG | + | chr3_4:56681203-56681222 | None:intergenic | 25.0% |
| ! | ATAGTTTCAGTTTCAGAAAA+TGG | + | chr3_4:56681213-56681232 | None:intergenic | 25.0% |
| !! | TCATTGGAATTTTACATGAA+TGG | + | chr3_4:56681621-56681640 | None:intergenic | 25.0% |
| ! | AGATTAAAAAAAGCTCTCAT+TGG | + | chr3_4:56681637-56681656 | None:intergenic | 25.0% |
| !!! | GAGCTTTTTTTAATCTAAGT+TGG | - | chr3_4:56681641-56681660 | Msa0508580:intron | 25.0% |
| !! | ATATGAAAGTGGGAATTTTA+TGG | - | chr3_4:56681695-56681714 | Msa0508580:intron | 25.0% |
| !! | TATGAAAGTGGGAATTTTAT+GGG | - | chr3_4:56681696-56681715 | Msa0508580:intron | 25.0% |
| ! | ACGCTTTCAACAATTTAAAT+AGG | + | chr3_4:56681759-56681778 | None:intergenic | 25.0% |
| !! | TTATGAAAATGAGTTGAAAG+AGG | - | chr3_4:56681954-56681973 | Msa0508580:intron | 25.0% |
| ! | AGCTTATACATAAGTGATTA+TGG | + | chr3_4:56681985-56682004 | None:intergenic | 25.0% |
| ! | AAACTTGAAAGATTATGGAT+TGG | + | chr3_4:56682090-56682109 | None:intergenic | 25.0% |
| ! | GAGAATTTATGAAAATGAGT+TGG | - | chr3_4:56681948-56681967 | Msa0508580:intron | 25.0% |
| !! | TAAATTTTGTGAGACTGTTT+GGG | + | chr3_4:56682195-56682214 | None:intergenic | 25.0% |
| !! | ATAAATTTTGTGAGACTGTT+TGG | + | chr3_4:56682196-56682215 | None:intergenic | 25.0% |
| !! | TTGAGTTGTTTATTCAAACA+TGG | - | chr3_4:56682553-56682572 | Msa0508580:intron | 25.0% |
| ! | GGTATTACTGAATAAACTAA+TGG | - | chr3_4:56682947-56682966 | Msa0508580:intron | 25.0% |
| ! | TCAGATATATCTGTTACATA+TGG | - | chr3_4:56683124-56683143 | Msa0508580:CDS | 25.0% |
| !!! | AATGTAGGTTTTATCATCTT+TGG | + | chr3_4:56683564-56683583 | None:intergenic | 25.0% |
| !! | ATAACATAAAGCTTTTTGCT+GGG | - | chr3_4:56683721-56683740 | Msa0508580:intron | 25.0% |
| ! | CTATTAATATCTCCAATTAC+AGG | - | chr3_4:56683771-56683790 | Msa0508580:intron | 25.0% |
| !!! | TAAATCTAGTTTTTGATCAC+TGG | - | chr3_4:56683897-56683916 | Msa0508580:intron | 25.0% |
| !!! | AAATCTAGTTTTTGATCACT+GGG | - | chr3_4:56683898-56683917 | Msa0508580:intron | 25.0% |
| !! | ATGTAACATTTTCTCATTTC+AGG | + | chr3_4:56684094-56684113 | None:intergenic | 25.0% |
| ! | GTAATTAGATTTACTCATTC+GGG | + | chr3_4:56684161-56684180 | None:intergenic | 25.0% |
| ! | ATATATCTCATTCTGAATGT+AGG | - | chr3_4:56684251-56684270 | Msa0508580:intron | 25.0% |
| !! | TAATGATGGAACAATTATGA+AGG | + | chr3_4:56684582-56684601 | None:intergenic | 25.0% |
| ! | TCTTGTGTGATTTATTTATC+CGG | - | chr3_4:56684647-56684666 | Msa0508580:five_prime_UTR | 25.0% |
| TGTGAATTGGAAGTGATAAA+TGG | + | chr3_4:56681045-56681064 | None:intergenic | 30.0% | |
| TTATCACTTCCAATTCACAA+AGG | - | chr3_4:56681046-56681065 | Msa0508580:three_prime_UTR | 30.0% | |
| ACTGAATTTCAAAATGCACA+AGG | + | chr3_4:56681289-56681308 | None:intergenic | 30.0% | |
| !!! | TTGTGCATTTTGAAATTCAG+TGG | - | chr3_4:56681288-56681307 | Msa0508580:three_prime_UTR | 30.0% |
| TGCAGCAAGTAAAAAAATGA+AGG | + | chr3_4:56681488-56681507 | None:intergenic | 30.0% | |
| ! | TTGGAATTTTACATGAATGG+CGG | + | chr3_4:56681618-56681637 | None:intergenic | 30.0% |
| ! | TTAAATTGTTGAAAGCGTGT+TGG | - | chr3_4:56681761-56681780 | Msa0508580:intron | 30.0% |
| !! | TAAGTTTTGTCAGACTGTTT+GGG | + | chr3_4:56682043-56682062 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTCAGACTGTT+TGG | + | chr3_4:56682044-56682063 | None:intergenic | 30.0% |
| GCTTAATTGAGCTTATCTAT+TGG | + | chr3_4:56682068-56682087 | None:intergenic | 30.0% | |
| AACCTAGAAAGATTATGGAT+TGG | + | chr3_4:56682242-56682261 | None:intergenic | 30.0% | |
| AAGCTAACCTAGAAAGATTA+TGG | + | chr3_4:56682247-56682266 | None:intergenic | 30.0% | |
| GAATAAACAACTCAACTAAG+TGG | + | chr3_4:56682548-56682567 | None:intergenic | 30.0% | |
| AAAAAGAAGACATACGTGAT+TGG | + | chr3_4:56682755-56682774 | None:intergenic | 30.0% | |
| ! | GTATGTCTTCTTTTTCTTCA+AGG | - | chr3_4:56682760-56682779 | Msa0508580:CDS | 30.0% |
| !!! | TTTATTTTGAACAGCTGCAA+AGG | - | chr3_4:56682842-56682861 | Msa0508580:intron | 30.0% |
| TTCAGTAATACCAAATGTCA+AGG | + | chr3_4:56682939-56682958 | None:intergenic | 30.0% | |
| TTAAATCTTACCTTCTCCAA+TGG | + | chr3_4:56683070-56683089 | None:intergenic | 30.0% | |
| AATTGTTTCATGCTTGCAAT+GGG | + | chr3_4:56683330-56683349 | None:intergenic | 30.0% | |
| CTACATTATGATTCAGTTCA+CGG | - | chr3_4:56683577-56683596 | Msa0508580:intron | 30.0% | |
| !! | TTTTATGATTTTGTGGGTTG+GGG | + | chr3_4:56683668-56683687 | None:intergenic | 30.0% |
| ! | GTTTTATGATTTTGTGGGTT+GGG | + | chr3_4:56683669-56683688 | None:intergenic | 30.0% |
| !! | GTTCGGTTTTATGATTTTGT+GGG | + | chr3_4:56683674-56683693 | None:intergenic | 30.0% |
| !! | TGTTCGGTTTTATGATTTTG+TGG | + | chr3_4:56683675-56683694 | None:intergenic | 30.0% |
| ! | ACCAGCAAAGATTTCATTTT+GGG | + | chr3_4:56683699-56683718 | None:intergenic | 30.0% |
| ! | TACCAGCAAAGATTTCATTT+TGG | + | chr3_4:56683700-56683719 | None:intergenic | 30.0% |
| ! | CATAACATAAAGCTTTTTGC+TGG | - | chr3_4:56683720-56683739 | Msa0508580:intron | 30.0% |
| ! | GGATAAGTGATAACTAGTTT+AGG | + | chr3_4:56684042-56684061 | None:intergenic | 30.0% |
| ! | TAACATTTTCTCATTTCAGG+CGG | + | chr3_4:56684091-56684110 | None:intergenic | 30.0% |
| ! | TATAAATCTGCAGTTTTGCA+CGG | - | chr3_4:56684181-56684200 | Msa0508580:intron | 30.0% |
| ! | CTTGAAACATGATTTGTGAT+AGG | + | chr3_4:56684295-56684314 | None:intergenic | 30.0% |
| GCATAATTTGATGGAGTTAT+AGG | + | chr3_4:56684336-56684355 | None:intergenic | 30.0% | |
| GAACAAAGGCAATAATTAGA+AGG | + | chr3_4:56684495-56684514 | None:intergenic | 30.0% | |
| CTTCTTTCAAAACAGAACAA+AGG | + | chr3_4:56684509-56684528 | None:intergenic | 30.0% | |
| !!! | TTGTTCTGTTTTGAAAGAAG+AGG | - | chr3_4:56684509-56684528 | Msa0508580:five_prime_UTR | 30.0% |
| !!! | TGTTCTGTTTTGAAAGAAGA+GGG | - | chr3_4:56684510-56684529 | Msa0508580:five_prime_UTR | 30.0% |
| GATGTTTACTTATACATGTG+TGG | - | chr3_4:56684616-56684635 | Msa0508580:five_prime_UTR | 30.0% | |
| TGTCTCTATATAACAGCATT+CGG | + | chr3_4:56684756-56684775 | None:intergenic | 30.0% | |
| !! | TTCATCTCCTTAGTCTTAAC+CGG | - | chr3_4:56680975-56680994 | Msa0508580:three_prime_UTR | 35.0% |
| GAATTGGAAGTGATAAATGG+TGG | + | chr3_4:56681042-56681061 | None:intergenic | 35.0% | |
| GAATTTCAAAATGCACAAGG+TGG | + | chr3_4:56681286-56681305 | None:intergenic | 35.0% | |
| ! | CTGCAAACGATGTCTTTTAT+TGG | - | chr3_4:56681330-56681349 | Msa0508580:CDS | 35.0% |
| ! | ACAAGCCTTGCATTTTTGTT+GGG | + | chr3_4:56681358-56681377 | None:intergenic | 35.0% |
| ! | AGCATCTGAAACAAGCTTTA+TGG | + | chr3_4:56681431-56681450 | None:intergenic | 35.0% |
| TCACTGCAAAGGAACTTTAA+AGG | - | chr3_4:56681452-56681471 | Msa0508580:CDS | 35.0% | |
| AGCCAATCCATAATCTTTCT+AGG | - | chr3_4:56682237-56682256 | Msa0508580:intron | 35.0% | |
| CAATCATGTGTGTGTCTTTA+AGG | - | chr3_4:56682332-56682351 | Msa0508580:intron | 35.0% | |
| CAATCAGATGCCTCTTTAAT+TGG | - | chr3_4:56682812-56682831 | Msa0508580:intron | 35.0% | |
| TAATACCAAATGTCAAGGAC+CGG | + | chr3_4:56682934-56682953 | None:intergenic | 35.0% | |
| TCTTCTGTTTATTCCAGACA+AGG | - | chr3_4:56682972-56682991 | Msa0508580:intron | 35.0% | |
| TTATTACTCCCCTGTACATA+AGG | - | chr3_4:56683184-56683203 | Msa0508580:intron | 35.0% | |
| TCTAGTCTACCTTATGTACA+GGG | + | chr3_4:56683196-56683215 | None:intergenic | 35.0% | |
| TAAAATTGCGAGCACAAAGA+AGG | - | chr3_4:56683282-56683301 | Msa0508580:intron | 35.0% | |
| ATTGTTTCATGCTTGCAATG+GGG | + | chr3_4:56683329-56683348 | None:intergenic | 35.0% | |
| CAATTGTTTCATGCTTGCAA+TGG | + | chr3_4:56683331-56683350 | None:intergenic | 35.0% | |
| ATAGCAATGACAGTGTAAGA+GGG | + | chr3_4:56683419-56683438 | None:intergenic | 35.0% | |
| GTCATATCAAAGTCTACTTG+TGG | + | chr3_4:56683487-56683506 | None:intergenic | 35.0% | |
| CGTGAACTGAATCATAATGT+AGG | + | chr3_4:56683579-56683598 | None:intergenic | 35.0% | |
| !! | GGTTTTATGATTTTGTGGGT+TGG | + | chr3_4:56683670-56683689 | None:intergenic | 35.0% |
| !!! | AGATTTCATTTTGGGGTGTT+CGG | + | chr3_4:56683691-56683710 | None:intergenic | 35.0% |
| ! | CCAGCAAAGATTTCATTTTG+GGG | + | chr3_4:56683698-56683717 | None:intergenic | 35.0% |
| ! | ACCTGAAGTGCATATTGATT+AGG | - | chr3_4:56683794-56683813 | Msa0508580:intron | 35.0% |
| TCCTAATCAATATGCACTTC+AGG | + | chr3_4:56683798-56683817 | None:intergenic | 35.0% | |
| ! | TAGTTTTTGATCACTGGGAA+GGG | - | chr3_4:56683903-56683922 | Msa0508580:intron | 35.0% |
| ! | TCTCTAGGAAAACAGTTGTT+TGG | - | chr3_4:56683970-56683989 | Msa0508580:intron | 35.0% |
| TTCGGGCAATTATTGACAAA+TGG | + | chr3_4:56684144-56684163 | None:intergenic | 35.0% | |
| ATATAGCGACAAGAAAACCA+AGG | + | chr3_4:56684225-56684244 | None:intergenic | 35.0% | |
| ! | TCATGTTTCAAGTGTTCACA+TGG | - | chr3_4:56684303-56684322 | Msa0508580:intron | 35.0% |
| CCTTAAAAAGCTGAGAGAAA+TGG | + | chr3_4:56684389-56684408 | None:intergenic | 35.0% | |
| ! | CCATTTCTCTCAGCTTTTTA+AGG | - | chr3_4:56684386-56684405 | Msa0508580:CDS | 35.0% |
| !! | TCTCAGCTTTTTAAGGAGAA+AGG | - | chr3_4:56684393-56684412 | Msa0508580:CDS | 35.0% |
| !! | CTCAGCTTTTTAAGGAGAAA+GGG | - | chr3_4:56684394-56684413 | Msa0508580:CDS | 35.0% |
| ! | CAACATTCAAGATTCTGGAA+CGG | + | chr3_4:56684469-56684488 | None:intergenic | 35.0% |
| TCACACAAAGTTAGAGTCTC+CGG | + | chr3_4:56680997-56681016 | None:intergenic | 40.0% | |
| !! | GGAAGTGATAAATGGTGGAT+CGG | + | chr3_4:56681037-56681056 | None:intergenic | 40.0% |
| TGGTACCCAACAAAAATGCA+AGG | - | chr3_4:56681350-56681369 | Msa0508580:CDS | 40.0% | |
| ! | CACAAGCCTTGCATTTTTGT+TGG | + | chr3_4:56681359-56681378 | None:intergenic | 40.0% |
| ATGCAAGGCTTGTGAGAAAA+CGG | - | chr3_4:56681365-56681384 | Msa0508580:CDS | 40.0% | |
| ATCAGCAGAAAGCTGATCAA+CGG | + | chr3_4:56681397-56681416 | None:intergenic | 40.0% | |
| ! | TTGTTGAAAGCGTGTTGGAT+CGG | - | chr3_4:56681766-56681785 | Msa0508580:intron | 40.0% |
| ACACACATGATTGACTGTCA+TGG | + | chr3_4:56682325-56682344 | None:intergenic | 40.0% | |
| GCTTAGCAGCTATTCATCAA+TGG | - | chr3_4:56682653-56682672 | Msa0508580:intron | 40.0% | |
| AGCAGCTATTCATCAATGGA+AGG | - | chr3_4:56682657-56682676 | Msa0508580:intron | 40.0% | |
| TTGAAGAGCTGCTCAAAATG+AGG | + | chr3_4:56682699-56682718 | None:intergenic | 40.0% | |
| ! | TCATTTTGAGCAGCTCTTCA+AGG | - | chr3_4:56682698-56682717 | Msa0508580:intron | 40.0% |
| TCAAGCAAATTTACCAGCAC+AGG | + | chr3_4:56682885-56682904 | None:intergenic | 40.0% | |
| TTAATCCGGTCCTTGACATT+TGG | - | chr3_4:56682926-56682945 | Msa0508580:intron | 40.0% | |
| ! | CAAGAAAAGTGTGCTACATG+TGG | - | chr3_4:56683031-56683050 | Msa0508580:intron | 40.0% |
| TGGCAAAACTGCTTATCCAT+TGG | - | chr3_4:56683051-56683070 | Msa0508580:CDS | 40.0% | |
| AACTGCTTATCCATTGGAGA+AGG | - | chr3_4:56683057-56683076 | Msa0508580:CDS | 40.0% | |
| CTAGTCTACCTTATGTACAG+GGG | + | chr3_4:56683195-56683214 | None:intergenic | 40.0% | |
| CTCTAGTCTACCTTATGTAC+AGG | + | chr3_4:56683197-56683216 | None:intergenic | 40.0% | |
| GGCAAAGTTGTACTTCATAC+AGG | + | chr3_4:56683308-56683327 | None:intergenic | 40.0% | |
| ! | TTAGTGCGACCTTTTGCTTT+TGG | - | chr3_4:56683352-56683371 | Msa0508580:intron | 40.0% |
| !! | TAGTGCGACCTTTTGCTTTT+GGG | - | chr3_4:56683353-56683372 | Msa0508580:intron | 40.0% |
| CATAGCAATGACAGTGTAAG+AGG | + | chr3_4:56683420-56683439 | None:intergenic | 40.0% | |
| CCCCAAAATGAAATCTTTGC+TGG | - | chr3_4:56683695-56683714 | Msa0508580:intron | 40.0% | |
| ! | CATAAAGCTTTTTGCTGGGT+TGG | - | chr3_4:56683725-56683744 | Msa0508580:intron | 40.0% |
| !! | TTTGCTGGGTTGGTTTAAAC+TGG | - | chr3_4:56683735-56683754 | Msa0508580:intron | 40.0% |
| !! | CTAGTTTTTGATCACTGGGA+AGG | - | chr3_4:56683902-56683921 | Msa0508580:intron | 40.0% |
| ! | GTTTGGTTCAAGTTAGCGAA+AGG | - | chr3_4:56683987-56684006 | Msa0508580:intron | 40.0% |
| ! | ACGCAGCAGATTCTACATTT+TGG | + | chr3_4:56684121-56684140 | None:intergenic | 40.0% |
| !! | AACCAAGGCATTCTAGTTCA+GGG | + | chr3_4:56684210-56684229 | None:intergenic | 40.0% |
| !! | AAACCAAGGCATTCTAGTTC+AGG | + | chr3_4:56684211-56684230 | None:intergenic | 40.0% |
| ! | AACATGATTTGTGATAGGCC+TGG | + | chr3_4:56684290-56684309 | None:intergenic | 40.0% |
| ! | TGTTTCAAGTGTTCACATGG+TGG | - | chr3_4:56684306-56684325 | Msa0508580:intron | 40.0% |
| TCAAGGGCTGCATAATTTGA+TGG | + | chr3_4:56684345-56684364 | None:intergenic | 40.0% | |
| ATCAAATTATGCAGCCCTTG+AGG | - | chr3_4:56684344-56684363 | Msa0508580:CDS | 40.0% | |
| TCAAATTATGCAGCCCTTGA+GGG | - | chr3_4:56684345-56684364 | Msa0508580:CDS | 40.0% | |
| GCAATACAAAATGCCCTCAA+GGG | + | chr3_4:56684361-56684380 | None:intergenic | 40.0% | |
| TGCAATACAAAATGCCCTCA+AGG | + | chr3_4:56684362-56684381 | None:intergenic | 40.0% | |
| CGTTCCAGAATCTTGAATGT+TGG | - | chr3_4:56684467-56684486 | Msa0508580:five_prime_UTR | 40.0% | |
| CAAGCAAGTGTTTGTATGTG+TGG | - | chr3_4:56684546-56684565 | Msa0508580:five_prime_UTR | 40.0% | |
| ! | TGTCAGTACTGAATGTTCAC+CGG | + | chr3_4:56684669-56684688 | None:intergenic | 40.0% |
| GCTGTTATATAGAGACACCT+TGG | - | chr3_4:56684759-56684778 | Msa0508580:five_prime_UTR | 40.0% | |
| GTTATATAGAGACACCTTGG+AGG | - | chr3_4:56684762-56684781 | Msa0508580:five_prime_UTR | 40.0% | |
| !!! | GTCTCTTTTTTTTGCCTCCA+AGG | + | chr3_4:56684779-56684798 | None:intergenic | 40.0% |
| AGAGTCTCCGGTTAAGACTA+AGG | + | chr3_4:56680985-56681004 | None:intergenic | 45.0% | |
| TCAGCAGAAAGCTGATCAAC+GGG | + | chr3_4:56681396-56681415 | None:intergenic | 45.0% | |
| GTTGATCAGCTTTCTGCTGA+TGG | - | chr3_4:56681396-56681415 | Msa0508580:CDS | 45.0% | |
| TTCAGATGCTCTCACTGCAA+AGG | - | chr3_4:56681441-56681460 | Msa0508580:CDS | 45.0% | |
| TGCAGCGTCAATCATAAGCA+AGG | + | chr3_4:56681591-56681610 | None:intergenic | 45.0% | |
| TGCACTAGTGAGTGACTGTA+TGG | - | chr3_4:56681813-56681832 | Msa0508580:intron | 45.0% | |
| ! | ACTAGAGTATCCTCCTTCTC+TGG | - | chr3_4:56683210-56683229 | Msa0508580:intron | 45.0% |
| ACATACCATACAGCCAGAGA+AGG | + | chr3_4:56683226-56683245 | None:intergenic | 45.0% | |
| !! | AGTGCGACCTTTTGCTTTTG+GGG | - | chr3_4:56683354-56683373 | Msa0508580:intron | 45.0% |
| TGCACTTCAGGTCCTGTAAT+TGG | + | chr3_4:56683786-56683805 | None:intergenic | 45.0% | |
| CTCTCCAGCCAAATTTGAAC+CGG | - | chr3_4:56683940-56683959 | Msa0508580:intron | 45.0% | |
| TCTCCAGCCAAATTTGAACC+GGG | - | chr3_4:56683941-56683960 | Msa0508580:intron | 45.0% | |
| AACTAGCCCCGGTTCAAATT+TGG | + | chr3_4:56683951-56683970 | None:intergenic | 45.0% | |
| ! | TTTTCCTAGAGAACTAGCCC+CGG | + | chr3_4:56683962-56683981 | None:intergenic | 45.0% |
| TACCCTGAACTAGAATGCCT+TGG | - | chr3_4:56684205-56684224 | Msa0508580:intron | 45.0% | |
| !! | CATTCAAGATTCTGGAACGG+AGG | + | chr3_4:56684466-56684485 | None:intergenic | 45.0% |
| GGCACCAACATTCAAGATTC+TGG | + | chr3_4:56684474-56684493 | None:intergenic | 45.0% | |
| !! | ATAAATTAGTTAATAATATT+TGG | - | chr3_4:56683101-56683120 | Msa0508580:CDS | 5.0% |
| GGTGGATCGGTGAAGATAGA+GGG | + | chr3_4:56681024-56681043 | None:intergenic | 50.0% | |
| ! | TGGTGGATCGGTGAAGATAG+AGG | + | chr3_4:56681025-56681044 | None:intergenic | 50.0% |
| CAGCAGAAAGCTGATCAACG+GGG | + | chr3_4:56681395-56681414 | None:intergenic | 50.0% | |
| ACAGCTGCAAAGGTAGCTGA+CGG | - | chr3_4:56682852-56682871 | Msa0508580:intron | 50.0% | |
| ! | AAAGCTGCGGGCATGTTTTC+TGG | - | chr3_4:56683004-56683023 | Msa0508580:intron | 50.0% |
| ! | AAGCTGCGGGCATGTTTTCT+GGG | - | chr3_4:56683005-56683024 | Msa0508580:intron | 50.0% |
| ATCCTCCTTCTCTGGCTGTA+TGG | - | chr3_4:56683218-56683237 | Msa0508580:intron | 50.0% | |
| TACCATACAGCCAGAGAAGG+AGG | + | chr3_4:56683223-56683242 | None:intergenic | 50.0% | |
| !! | GTGCGACCTTTTGCTTTTGG+GGG | - | chr3_4:56683355-56683374 | Msa0508580:intron | 50.0% |
| TGAACGCCCCCAAAAGCAAA+AGG | + | chr3_4:56683364-56683383 | None:intergenic | 50.0% | |
| !!! | TTGCTTTTGGGGGCGTTCAT+TGG | - | chr3_4:56683365-56683384 | Msa0508580:intron | 50.0% |
| CTCCAGCCAAATTTGAACCG+GGG | - | chr3_4:56683942-56683961 | Msa0508580:intron | 50.0% | |
| CCTCTTATTGGAGTGCAGAC+TGG | + | chr3_4:56684063-56684082 | None:intergenic | 50.0% | |
| CCAGTCTGCACTCCAATAAG+AGG | - | chr3_4:56684060-56684079 | Msa0508580:intron | 50.0% | |
| GTAGGTAACAGTCGAAAGCC+AGG | - | chr3_4:56684269-56684288 | Msa0508580:intron | 50.0% | |
| GAGCAGCTCTTCAAGGAGCA+TGG | - | chr3_4:56682705-56682724 | Msa0508580:intron | 55.0% | |
| TGACGGTACAACTCCTGTGC+TGG | - | chr3_4:56682869-56682888 | Msa0508580:intron | 55.0% | |
| CTTTGCTAGGGGTCCTTGTC+TGG | + | chr3_4:56682988-56683007 | None:intergenic | 55.0% | |
| AAGGACCCCTAGCAAAGCTG+CGG | - | chr3_4:56682991-56683010 | Msa0508580:intron | 55.0% | |
| ACATGCCCGCAGCTTTGCTA+GGG | + | chr3_4:56683000-56683019 | None:intergenic | 55.0% | |
| AACATGCCCGCAGCTTTGCT+AGG | + | chr3_4:56683001-56683020 | None:intergenic | 55.0% | |
| AGCCCCGGTTCAAATTTGGC+TGG | + | chr3_4:56683947-56683966 | None:intergenic | 55.0% | |
| !! | TGAACCGGGGCTAGTTCTCT+AGG | - | chr3_4:56683955-56683974 | Msa0508580:intron | 55.0% |
| CAGGCGGTCTAGCCTCTTAT+TGG | + | chr3_4:56684075-56684094 | None:intergenic | 55.0% | |
| AGGACCCCTAGCAAAGCTGC+GGG | - | chr3_4:56682992-56683011 | Msa0508580:intron | 60.0% | |
| CATGCCCGCAGCTTTGCTAG+GGG | + | chr3_4:56682999-56683018 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 56680947 | 56684852 | 56680947 | ID=Msa0508580;Name=Msa0508580 |
| chr3_4 | mRNA | 56680947 | 56684852 | 56680947 | ID=Msa0508580-mRNA-1;Parent=Msa0508580;Name=Msa0508580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=368|1|1|1|0.8|0.66|6|370|191 |
| chr3_4 | exon | 56680947 | 56681526 | 56680947 | ID=Msa0508580-mRNA-1:exon:12794;Parent=Msa0508580-mRNA-1 |
| chr3_4 | exon | 56682721 | 56682810 | 56682721 | ID=Msa0508580-mRNA-1:exon:12793;Parent=Msa0508580-mRNA-1 |
| chr3_4 | exon | 56682909 | 56682943 | 56682909 | ID=Msa0508580-mRNA-1:exon:12792;Parent=Msa0508580-mRNA-1 |
| chr3_4 | exon | 56683040 | 56683145 | 56683040 | ID=Msa0508580-mRNA-1:exon:12791;Parent=Msa0508580-mRNA-1 |
| chr3_4 | exon | 56684326 | 56684685 | 56684326 | ID=Msa0508580-mRNA-1:exon:12790;Parent=Msa0508580-mRNA-1 |
| chr3_4 | exon | 56684710 | 56684852 | 56684710 | ID=Msa0508580-mRNA-1:exon:12789;Parent=Msa0508580-mRNA-1 |
| chr3_4 | five_prime_UTR | 56684710 | 56684852 | 56684710 | ID=Msa0508580-mRNA-1:five_prime_utr;Parent=Msa0508580-mRNA-1 |
| chr3_4 | five_prime_UTR | 56684461 | 56684685 | 56684461 | ID=Msa0508580-mRNA-1:five_prime_utr;Parent=Msa0508580-mRNA-1 |
| chr3_4 | CDS | 56684326 | 56684460 | 56684326 | ID=Msa0508580-mRNA-1:cds;Parent=Msa0508580-mRNA-1 |
| chr3_4 | CDS | 56683040 | 56683145 | 56683040 | ID=Msa0508580-mRNA-1:cds;Parent=Msa0508580-mRNA-1 |
| chr3_4 | CDS | 56682909 | 56682943 | 56682909 | ID=Msa0508580-mRNA-1:cds;Parent=Msa0508580-mRNA-1 |
| chr3_4 | CDS | 56682721 | 56682810 | 56682721 | ID=Msa0508580-mRNA-1:cds;Parent=Msa0508580-mRNA-1 |
| chr3_4 | CDS | 56681317 | 56681526 | 56681317 | ID=Msa0508580-mRNA-1:cds;Parent=Msa0508580-mRNA-1 |
| chr3_4 | three_prime_UTR | 56680947 | 56681316 | 56680947 | ID=Msa0508580-mRNA-1:three_prime_utr;Parent=Msa0508580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
