AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549970 MtrunA17_Chr4g0034831 78.662 314 19 5 10 291 85 382 4.97e-160 450
Msa0549970 MtrunA17_Chr4g0034831 47.867 211 70 5 14 201 192 385 1.60e-43 152
Msa0549970 MtrunA17_Chr4g0034831 46.512 172 67 5 12 160 215 384 1.42e-33 126
Msa0549970 MtrunA17_Chr3g0090451 31.515 330 169 13 13 291 137 460 2.05e-28 114
Msa0549970 MtrunA17_Chr3g0090451 30.952 336 175 14 7 291 235 564 2.33e-27 111
Msa0549970 MtrunA17_Chr3g0090451 31.454 337 172 15 7 291 209 538 2.89e-26 108
Msa0549970 MtrunA17_Chr3g0090451 30.189 318 148 13 7 291 314 590 6.83e-25 104
Msa0549970 MtrunA17_Chr3g0090451 31.596 307 147 13 13 291 111 382 4.46e-24 101
Msa0549970 MtrunA17_Chr3g0090471 31.894 301 139 14 7 291 212 462 4.97e-27 109
Msa0549970 MtrunA17_Chr3g0090471 30.172 348 155 16 10 291 111 436 1.13e-24 102
Msa0549970 MtrunA17_Chr3g0090471 32.698 315 158 14 13 291 88 384 6.74e-24 100
Msa0549970 MtrunA17_Chr3g0090471 32.317 328 156 18 6 291 55 358 1.51e-21 94.0
Msa0549970 MtrunA17_Chr3g0090471 33.939 165 78 7 10 161 319 465 1.28e-12 67.8
Msa0549970 MtrunA17_Chr3g0144461 31.343 335 177 16 4 291 75 403 3.32e-26 107
Msa0549970 MtrunA17_Chr3g0144461 32.459 305 136 17 10 287 60 321 5.33e-23 97.8
Msa0549970 MtrunA17_Chr3g0144461 29.693 293 135 14 13 288 188 426 1.89e-18 84.7
Msa0549970 MtrunA17_Chr3g0144471 33.681 288 145 15 10 270 91 359 4.79e-23 97.1
Msa0549970 MtrunA17_Chr3g0144471 29.779 272 146 11 34 291 73 313 7.97e-19 85.5
Msa0549970 MtrunA17_Chr3g0138221 28.115 313 177 14 10 289 75 372 5.83e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 77 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCTTGTCGCACTTGGTC+TGG 0.282329 4_1:-45341716 None:intergenic
ATACTTTGTAGCACTTGGTC+TGG 0.301950 4_1:-45341566 None:intergenic
AGACCCACAATTTCAGCTTA+TGG 0.346620 4_1:+45340917 Msa0549970:CDS
ATACCAAGTGTTACAAAGTA+TGG 0.347597 4_1:+45341418 Msa0549970:CDS
ATACTTTGTAACACTTGGTC+TGG 0.359796 4_1:-45341791 None:intergenic
GGCAAGTTGTTCTTGTGCCT+TGG 0.361735 4_1:-45340813 None:intergenic
GTTACAAAAGCGAGAAGTTA+TGG 0.369310 4_1:+45341143 Msa0549970:CDS
TACCTTGTCGCACTTGGTCT+GGG 0.372376 4_1:-45341715 None:intergenic
TGATGACAAGATTAATATAA+AGG 0.378507 4_1:+45340940 Msa0549970:CDS
ATACCTTGTAACACTTGGTC+TGG 0.379154 4_1:-45341341 None:intergenic
ATAACTTGTAACACTTGGTA+TGG 0.386882 4_1:-45341491 None:intergenic
ATACTTTGTAACACTTGGTA+TGG 0.405216 4_1:-45341416 None:intergenic
ATAACTTGTAACACTTGGTA+TGG 0.408404 4_1:-45341641 None:intergenic
ATATTTAGTGTGTTTGTTGC+GGG 0.414691 4_1:-45340974 None:intergenic
TCATTATACTTGGTGGCACT+TGG 0.424744 4_1:-45341871 None:intergenic
TACTTGGTGGCACTTGGCCT+AGG 0.430240 4_1:-45341865 None:intergenic
ATACCAAGTGTTACAAGTTA+TGG 0.431717 4_1:+45341643 Msa0549970:CDS
TACTTTGTAGCACTTGGTCT+GGG 0.436190 4_1:-45341565 None:intergenic
CCATCATACTTTGTAACACT+TGG 0.443820 4_1:-45341796 None:intergenic
GGTTCAAACTCGTCATTAAT+CGG 0.444386 4_1:-45341694 None:intergenic
CTGCCATACTTTGTAACACT+TGG 0.446156 4_1:-45341421 None:intergenic
AGGTTCAAACTCGTCGTTCA+CGG 0.447948 4_1:-45341845 None:intergenic
CCATCATACTTTGTAGCACT+TGG 0.452826 4_1:-45341571 None:intergenic
GGTTCAAACTCGTCATTAAC+CGG 0.460302 4_1:-45341544 None:intergenic
CCGTCATACTTTGTAGCACT+TGG 0.470820 4_1:-45341190 None:intergenic
GGTTCAAACTCGTCATTCCT+TGG 0.473350 4_1:-45341244 None:intergenic
CCATCATACCTTGTGACACT+TGG 0.480501 4_1:-45341115 None:intergenic
TACCTTGTGACACTTGGCCT+TGG 0.486639 4_1:-45341109 None:intergenic
TTACAAAAGCGAGAAGTTAT+GGG 0.490342 4_1:+45341144 Msa0549970:CDS
GGTTCAAACTCGTCGTTCAC+GGG 0.491502 4_1:-45341844 None:intergenic
TAAGCTGAAATTGTGGGTCT+TGG 0.493615 4_1:-45340914 None:intergenic
GGTTCAAACCCGTCGTTCAT+CGG 0.495800 4_1:-45341769 None:intergenic
AACCCAGACCAAGTGTTACA+AGG 0.496658 4_1:+45341338 Msa0549970:CDS
TACCTTGTAACACTTGGTCT+GGG 0.512094 4_1:-45341340 None:intergenic
CCGTCATACCTTGTCGCACT+TGG 0.513672 4_1:-45341721 None:intergenic
TGAAACTACCGATGAACGAC+GGG 0.514049 4_1:+45341761 Msa0549970:CDS
CCAAGTGTCACAAGGTATGA+TGG 0.514391 4_1:+45341115 Msa0549970:CDS
GTTATAAGAGTATAAAACTA+CGG 0.524735 4_1:+45341299 Msa0549970:CDS
GATATTTAGTGTGTTTGTTG+CGG 0.527545 4_1:-45340975 None:intergenic
TACTTTGTAGCACTTGGCCT+AGG 0.529190 4_1:-45341184 None:intergenic
TCACCATAAGCTGAAATTGT+GGG 0.533189 4_1:-45340920 None:intergenic
TTATAAGAGTATAAAACTAC+GGG 0.540806 4_1:+45341300 Msa0549970:CDS
TACTTTGTAACACTTGGTCT+GGG 0.542995 4_1:-45341790 None:intergenic
TACTTTGTAACACTTGGTAT+GGG 0.551408 4_1:-45341415 None:intergenic
AGTACAAAACTATCGGTGAA+TGG 0.553539 4_1:+45341457 Msa0549970:CDS
TTGCCATAACTTGTAACACT+TGG 0.554234 4_1:-45341646 None:intergenic
CCGTCATACCTTGTAACACT+TGG 0.556480 4_1:-45341346 None:intergenic
GTTACAAAGTATGGCAGTGA+TGG 0.559355 4_1:+45341427 Msa0549970:CDS
CCAAGTGTTACAAAGTATGA+TGG 0.562453 4_1:+45341796 Msa0549970:CDS
TAACTTGTAACACTTGGTAT+GGG 0.572877 4_1:-45341640 None:intergenic
CCAAGTGCTACAAAGTATGA+TGG 0.583943 4_1:+45341571 Msa0549970:CDS
ATGAAACTACCGATGAACGA+CGG 0.584571 4_1:+45341760 Msa0549970:CDS
TAACTTGTAACACTTGGTAT+GGG 0.586261 4_1:-45341490 None:intergenic
AAGTATGACGGCGATGGTGA+AGG 0.589181 4_1:+45341202 Msa0549970:CDS
ATCACCATAAGCTGAAATTG+TGG 0.595027 4_1:-45340921 None:intergenic
ATATAAGAGTATTAAACTAC+CGG 0.604486 4_1:+45341525 Msa0549970:intron
GTTACAAGGTATGACGGTGA+TGG 0.613311 4_1:+45341277 Msa0549970:intron
TTATAAGAGTACAAAACTAT+CGG 0.615435 4_1:+45341450 Msa0549970:CDS
TTATCAGAGTACAAAACTAT+CGG 0.620899 4_1:+45341375 Msa0549970:CDS
AGCCAAGGCCAAGTGTCACA+AGG 0.624209 4_1:+45341107 Msa0549970:CDS
TTATCAGAGTACAAAACTAT+CGG 0.624493 4_1:+45341600 Msa0549970:CDS
GCTACAAAGTATGACGGCGA+TGG 0.626214 4_1:+45341196 Msa0549970:CDS
CCAAGTGCTACAAAGTATGA+CGG 0.634290 4_1:+45341190 Msa0549970:CDS
CCAAGTGTTACAAGGTATGA+CGG 0.636357 4_1:+45341271 Msa0549970:intron
CCAAGTGTTACAAGGTATGA+CGG 0.636357 4_1:+45341346 Msa0549970:CDS
TGTCCTCTGAGTTTGAACCT+AGG 0.640039 4_1:+45341167 Msa0549970:CDS
AACCCAGACCAAGTGCGACA+AGG 0.648941 4_1:+45341713 Msa0549970:CDS
ATATGACTATTAAACTACCA+AGG 0.661952 4_1:+45341227 Msa0549970:CDS
GCTACAAAGTATGATGGTGA+TGG 0.662559 4_1:+45341577 Msa0549970:CDS
GTCACAAGGTATGATGGTGA+TGG 0.664386 4_1:+45341121 Msa0549970:CDS
GCACAAGAACAACTTGCCAA+AGG 0.672197 4_1:+45340818 Msa0549970:CDS
GTTACAAGTTATGGCAACGA+TGG 0.674231 4_1:+45341652 Msa0549970:CDS
CGAACCTTTGAAGAACTCCA+AGG 0.682187 4_1:+45340796 None:intergenic
TGGCCTAGGTTCAAACTCAG+AGG 0.693294 4_1:-45341170 None:intergenic
TGAACGACGAGTTTGAACCT+AGG 0.706800 4_1:+45341848 Msa0549970:CDS
ATAAGAGTATAAAACTACGG+GGG 0.742499 4_1:+45341302 Msa0549970:CDS
TATAAGAGTATAAAACTACG+GGG 0.765134 4_1:+45341301 Msa0549970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAATATCATAGAAAAAA+AGG + chr4_1:45340871-45340890 Msa0549970:intron 15.0%
!! ACTAAATATCATAGAAAAAA+AGG + chr4_1:45340871-45340890 Msa0549970:intron 15.0%
!! ACTAAATATCATAGAAAAAA+AGG + chr4_1:45340871-45340890 Msa0549970:intron 15.0%
!! ACTAAATATCATAGAAAAAA+AGG + chr4_1:45340871-45340890 Msa0549970:intron 15.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_1:45340874-45340893 Msa0549970:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_1:45340940-45340959 Msa0549970:CDS 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_1:45340874-45340893 Msa0549970:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_1:45340940-45340959 Msa0549970:CDS 20.0%
!!! GTTATAAGAGTATAAAACTA+CGG + chr4_1:45341299-45341318 Msa0549970:CDS 20.0%
!!! TTATAAGAGTATAAAACTAC+GGG + chr4_1:45341300-45341319 Msa0549970:CDS 20.0%
!!! TTATAAGAGTACAAAACTAT+CGG + chr4_1:45341450-45341469 Msa0549970:CDS 20.0%
!!! ATATAAGAGTATTAAACTAC+CGG + chr4_1:45341525-45341544 Msa0549970:intron 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_1:45340874-45340893 Msa0549970:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_1:45340940-45340959 Msa0549970:CDS 20.0%
!! AAATATCATAGAAAAAAAGG+TGG + chr4_1:45340874-45340893 Msa0549970:intron 20.0%
!! TGATGACAAGATTAATATAA+AGG + chr4_1:45340940-45340959 Msa0549970:CDS 20.0%
!!! GTTATAAGAGTATAAAACTA+CGG + chr4_1:45341299-45341318 Msa0549970:CDS 20.0%
!!! TTATAAGAGTATAAAACTAC+GGG + chr4_1:45341300-45341319 Msa0549970:CDS 20.0%
!!! TTATAAGAGTACAAAACTAT+CGG + chr4_1:45341450-45341469 Msa0549970:CDS 20.0%
!!! ATATAAGAGTATTAAACTAC+CGG + chr4_1:45341525-45341544 Msa0549970:intron 20.0%
!!! ATATTTAGTGTGTTTGTTGT+GGG - chr4_1:45340860-45340879 None:intergenic 25.0%
!! ATATAAAAGATTTTGAGCCA+AGG + chr4_1:45341092-45341111 Msa0549970:CDS 25.0%
! ATATGACTATTAAACTACCA+AGG + chr4_1:45341227-45341246 Msa0549970:CDS 25.0%
!! TATAAGAGTATAAAACTACG+GGG + chr4_1:45341301-45341320 Msa0549970:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_1:45341375-45341394 Msa0549970:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_1:45341375-45341394 Msa0549970:CDS 25.0%
!!! ATATTTAGTGTGTTTGTTGT+GGG - chr4_1:45340860-45340879 None:intergenic 25.0%
!! ATATAAAAGATTTTGAGCCA+AGG + chr4_1:45341092-45341111 Msa0549970:CDS 25.0%
! ATATGACTATTAAACTACCA+AGG + chr4_1:45341227-45341246 Msa0549970:CDS 25.0%
!! TATAAGAGTATAAAACTACG+GGG + chr4_1:45341301-45341320 Msa0549970:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_1:45341375-45341394 Msa0549970:CDS 25.0%
! TTATCAGAGTACAAAACTAT+CGG + chr4_1:45341375-45341394 Msa0549970:CDS 25.0%
! GATATTTAGTGTGTTTGTTG+TGG - chr4_1:45340861-45340880 None:intergenic 30.0%
! ATATTTAGTGTGTTTGTTGC+GGG - chr4_1:45340977-45340996 None:intergenic 30.0%
! GATATTTAGTGTGTTTGTTG+CGG - chr4_1:45340861-45340880 None:intergenic 30.0%
TTACAAAAGCGAGAAGTTAT+GGG + chr4_1:45341144-45341163 Msa0549970:CDS 30.0%
! ATAAGAGTATAAAACTACGG+GGG + chr4_1:45341302-45341321 Msa0549970:CDS 30.0%
TACTTTGTAACACTTGGTAT+GGG - chr4_1:45341418-45341437 None:intergenic 30.0%
ATACTTTGTAACACTTGGTA+TGG - chr4_1:45341419-45341438 None:intergenic 30.0%
ATACCAAGTGTTACAAAGTA+TGG + chr4_1:45341418-45341437 Msa0549970:CDS 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_1:45341493-45341512 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_1:45341494-45341513 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_1:45341493-45341512 Msa0549970:intron 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_1:45341493-45341512 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_1:45341494-45341513 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_1:45341493-45341512 Msa0549970:intron 30.0%
! GATATTTAGTGTGTTTGTTG+TGG - chr4_1:45340861-45340880 None:intergenic 30.0%
! ATATTTAGTGTGTTTGTTGC+GGG - chr4_1:45340977-45340996 None:intergenic 30.0%
! GATATTTAGTGTGTTTGTTG+CGG - chr4_1:45340861-45340880 None:intergenic 30.0%
TTACAAAAGCGAGAAGTTAT+GGG + chr4_1:45341144-45341163 Msa0549970:CDS 30.0%
! ATAAGAGTATAAAACTACGG+GGG + chr4_1:45341302-45341321 Msa0549970:CDS 30.0%
TACTTTGTAACACTTGGTAT+GGG - chr4_1:45341418-45341437 None:intergenic 30.0%
ATACTTTGTAACACTTGGTA+TGG - chr4_1:45341419-45341438 None:intergenic 30.0%
ATACCAAGTGTTACAAAGTA+TGG + chr4_1:45341418-45341437 Msa0549970:CDS 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_1:45341493-45341512 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_1:45341494-45341513 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_1:45341493-45341512 Msa0549970:intron 30.0%
! TAACTTGTAACACTTGGTAT+GGG - chr4_1:45341493-45341512 None:intergenic 30.0%
! ATAACTTGTAACACTTGGTA+TGG - chr4_1:45341494-45341513 None:intergenic 30.0%
ATACCAAGTGTTACAAGTTA+TGG + chr4_1:45341493-45341512 Msa0549970:intron 30.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_1:45340923-45340942 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_1:45340924-45340943 None:intergenic 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_1:45340923-45340942 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_1:45340924-45340943 None:intergenic 35.0%
GTTACAAAAGCGAGAAGTTA+TGG + chr4_1:45341143-45341162 Msa0549970:CDS 35.0%
AGTACAAAACTATCGGTGAA+TGG + chr4_1:45341382-45341401 Msa0549970:CDS 35.0%
! CTTCCATAACTTGTAACACT+TGG - chr4_1:45341499-45341518 None:intergenic 35.0%
GTTACAAGTTATGGAAGTGA+TGG + chr4_1:45341502-45341521 Msa0549970:intron 35.0%
! TTGCCATAACTTGTAACACT+TGG - chr4_1:45341649-45341668 None:intergenic 35.0%
GGTTCAAACTCGTCATTAAT+CGG - chr4_1:45341697-45341716 None:intergenic 35.0%
TACTTTGTAACACTTGGTCT+GGG - chr4_1:45341793-45341812 None:intergenic 35.0%
ATACTTTGTAACACTTGGTC+TGG - chr4_1:45341794-45341813 None:intergenic 35.0%
CCATCATACTTTGTAACACT+TGG - chr4_1:45341799-45341818 None:intergenic 35.0%
CCAAGTGTTACAAAGTATGA+TGG + chr4_1:45341796-45341815 Msa0549970:CDS 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_1:45340923-45340942 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_1:45340924-45340943 None:intergenic 35.0%
TCACCATAAGCTGAAATTGT+GGG - chr4_1:45340923-45340942 None:intergenic 35.0%
ATCACCATAAGCTGAAATTG+TGG - chr4_1:45340924-45340943 None:intergenic 35.0%
GTTACAAAAGCGAGAAGTTA+TGG + chr4_1:45341143-45341162 Msa0549970:CDS 35.0%
AGTACAAAACTATCGGTGAA+TGG + chr4_1:45341382-45341401 Msa0549970:CDS 35.0%
! CTTCCATAACTTGTAACACT+TGG - chr4_1:45341499-45341518 None:intergenic 35.0%
GTTACAAGTTATGGAAGTGA+TGG + chr4_1:45341502-45341521 Msa0549970:intron 35.0%
! TTGCCATAACTTGTAACACT+TGG - chr4_1:45341649-45341668 None:intergenic 35.0%
GGTTCAAACTCGTCATTAAT+CGG - chr4_1:45341697-45341716 None:intergenic 35.0%
TACTTTGTAACACTTGGTCT+GGG - chr4_1:45341793-45341812 None:intergenic 35.0%
ATACTTTGTAACACTTGGTC+TGG - chr4_1:45341794-45341813 None:intergenic 35.0%
CCATCATACTTTGTAACACT+TGG - chr4_1:45341799-45341818 None:intergenic 35.0%
CCAAGTGTTACAAAGTATGA+TGG + chr4_1:45341796-45341815 Msa0549970:CDS 35.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_1:45340917-45340936 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_1:45340917-45340936 Msa0549970:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_1:45340917-45340936 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_1:45340917-45340936 Msa0549970:CDS 40.0%
CCAAGTGCTACAAAGTATGA+CGG + chr4_1:45341190-45341209 Msa0549970:CDS 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_1:45341268-45341287 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_1:45341269-45341288 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_1:45341271-45341290 Msa0549970:intron 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_1:45341268-45341287 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_1:45341269-45341288 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_1:45341271-45341290 Msa0549970:intron 40.0%
CTGCCATACTTTGTAACACT+TGG - chr4_1:45341424-45341443 None:intergenic 40.0%
GTTACAAAGTATGGCAGTGA+TGG + chr4_1:45341427-45341446 Msa0549970:CDS 40.0%
GGTTCAAACTCGTCATTAAC+CGG - chr4_1:45341547-45341566 None:intergenic 40.0%
TACTTTGTAGCACTTGGTCT+GGG - chr4_1:45341568-45341587 None:intergenic 40.0%
ATACTTTGTAGCACTTGGTC+TGG - chr4_1:45341569-45341588 None:intergenic 40.0%
CCATCATACTTTGTAGCACT+TGG - chr4_1:45341574-45341593 None:intergenic 40.0%
CCAAGTGCTACAAAGTATGA+TGG + chr4_1:45341190-45341209 Msa0549970:CDS 40.0%
! GCTACAAAGTATGATGGTGA+TGG + chr4_1:45341577-45341596 Msa0549970:CDS 40.0%
GTTACAAGTTATGGCAACGA+TGG + chr4_1:45341652-45341671 Msa0549970:CDS 40.0%
ATGAAACTACCGATGAACGA+CGG + chr4_1:45341760-45341779 Msa0549970:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_1:45340917-45340936 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_1:45340917-45340936 Msa0549970:CDS 40.0%
TAAGCTGAAATTGTGGGTCT+TGG - chr4_1:45340917-45340936 None:intergenic 40.0%
AGACCCACAATTTCAGCTTA+TGG + chr4_1:45340917-45340936 Msa0549970:CDS 40.0%
CCAAGTGCTACAAAGTATGA+CGG + chr4_1:45341190-45341209 Msa0549970:CDS 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_1:45341268-45341287 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_1:45341269-45341288 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_1:45341271-45341290 Msa0549970:intron 40.0%
TACCTTGTAACACTTGGTCT+GGG - chr4_1:45341268-45341287 None:intergenic 40.0%
ATACCTTGTAACACTTGGTC+TGG - chr4_1:45341269-45341288 None:intergenic 40.0%
CCAAGTGTTACAAGGTATGA+CGG + chr4_1:45341271-45341290 Msa0549970:intron 40.0%
CTGCCATACTTTGTAACACT+TGG - chr4_1:45341424-45341443 None:intergenic 40.0%
GTTACAAAGTATGGCAGTGA+TGG + chr4_1:45341427-45341446 Msa0549970:CDS 40.0%
GGTTCAAACTCGTCATTAAC+CGG - chr4_1:45341547-45341566 None:intergenic 40.0%
TACTTTGTAGCACTTGGTCT+GGG - chr4_1:45341568-45341587 None:intergenic 40.0%
ATACTTTGTAGCACTTGGTC+TGG - chr4_1:45341569-45341588 None:intergenic 40.0%
CCATCATACTTTGTAGCACT+TGG - chr4_1:45341574-45341593 None:intergenic 40.0%
CCAAGTGCTACAAAGTATGA+TGG + chr4_1:45341190-45341209 Msa0549970:CDS 40.0%
! GCTACAAAGTATGATGGTGA+TGG + chr4_1:45341577-45341596 Msa0549970:CDS 40.0%
GTTACAAGTTATGGCAACGA+TGG + chr4_1:45341652-45341671 Msa0549970:CDS 40.0%
ATGAAACTACCGATGAACGA+CGG + chr4_1:45341760-45341779 Msa0549970:CDS 40.0%
GCACAAGAACAACTTGCCAA+AGG + chr4_1:45340818-45340837 Msa0549970:CDS 45.0%
ATGCTCATCGCACTTACCTT+TGG - chr4_1:45340837-45340856 None:intergenic 45.0%
CCATCATACCTTGTGACACT+TGG - chr4_1:45341118-45341137 None:intergenic 45.0%
CCAAGTGTCACAAGGTATGA+TGG + chr4_1:45341115-45341134 Msa0549970:CDS 45.0%
! GTCACAAGGTATGATGGTGA+TGG + chr4_1:45341121-45341140 Msa0549970:CDS 45.0%
TGTCCTCTGAGTTTGAACCT+AGG + chr4_1:45341167-45341186 Msa0549970:CDS 45.0%
TACTTTGTAGCACTTGGCCT+AGG - chr4_1:45341187-45341206 None:intergenic 45.0%
CCGTCATACTTTGTAGCACT+TGG - chr4_1:45341193-45341212 None:intergenic 45.0%
GGTTCAAACTCGTCATTCCT+TGG - chr4_1:45341247-45341266 None:intergenic 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_1:45341263-45341282 Msa0549970:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_1:45341274-45341293 None:intergenic 45.0%
GTTACAAGGTATGACGGTGA+TGG + chr4_1:45341277-45341296 Msa0549970:intron 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_1:45341263-45341282 Msa0549970:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_1:45341274-45341293 None:intergenic 45.0%
TGAAACTACCGATGAACGAC+GGG + chr4_1:45341761-45341780 Msa0549970:CDS 45.0%
AGGTTCAAACTCGTCGTTCA+CGG - chr4_1:45341848-45341867 None:intergenic 45.0%
TGAACGACGAGTTTGAACCT+AGG + chr4_1:45341848-45341867 Msa0549970:CDS 45.0%
GCACAAGAACAACTTGCCAA+AGG + chr4_1:45340818-45340837 Msa0549970:CDS 45.0%
ATGCTCATCGCACTTACCTT+TGG - chr4_1:45340837-45340856 None:intergenic 45.0%
CCATCATACCTTGTGACACT+TGG - chr4_1:45341118-45341137 None:intergenic 45.0%
CCAAGTGTCACAAGGTATGA+TGG + chr4_1:45341115-45341134 Msa0549970:CDS 45.0%
! GTCACAAGGTATGATGGTGA+TGG + chr4_1:45341121-45341140 Msa0549970:CDS 45.0%
TGTCCTCTGAGTTTGAACCT+AGG + chr4_1:45341167-45341186 Msa0549970:CDS 45.0%
TACTTTGTAGCACTTGGCCT+AGG - chr4_1:45341187-45341206 None:intergenic 45.0%
CCGTCATACTTTGTAGCACT+TGG - chr4_1:45341193-45341212 None:intergenic 45.0%
GGTTCAAACTCGTCATTCCT+TGG - chr4_1:45341247-45341266 None:intergenic 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_1:45341263-45341282 Msa0549970:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_1:45341274-45341293 None:intergenic 45.0%
GTTACAAGGTATGACGGTGA+TGG + chr4_1:45341277-45341296 Msa0549970:intron 45.0%
AACCCAGACCAAGTGTTACA+AGG + chr4_1:45341263-45341282 Msa0549970:intron 45.0%
CCGTCATACCTTGTAACACT+TGG - chr4_1:45341274-45341293 None:intergenic 45.0%
TGAAACTACCGATGAACGAC+GGG + chr4_1:45341761-45341780 Msa0549970:CDS 45.0%
AGGTTCAAACTCGTCGTTCA+CGG - chr4_1:45341848-45341867 None:intergenic 45.0%
TGAACGACGAGTTTGAACCT+AGG + chr4_1:45341848-45341867 Msa0549970:CDS 45.0%
GGCAAGTTGTTCTTGTGCCT+TGG - chr4_1:45340816-45340835 None:intergenic 50.0%
TACCTTGTGACACTTGGCCT+TGG - chr4_1:45341112-45341131 None:intergenic 50.0%
TGGCCTAGGTTCAAACTCAG+AGG - chr4_1:45341173-45341192 None:intergenic 50.0%
GCTACAAAGTATGACGGCGA+TGG + chr4_1:45341196-45341215 Msa0549970:CDS 50.0%
AAGTATGACGGCGATGGTGA+AGG + chr4_1:45341202-45341221 Msa0549970:CDS 50.0%
TACCTTGTCGCACTTGGTCT+GGG - chr4_1:45341718-45341737 None:intergenic 50.0%
ATACCTTGTCGCACTTGGTC+TGG - chr4_1:45341719-45341738 None:intergenic 50.0%
CCAAGTGCGACAAGGTATGA+CGG + chr4_1:45341721-45341740 Msa0549970:intron 50.0%
GGTTCAAACCCGTCGTTCAT+CGG - chr4_1:45341772-45341791 None:intergenic 50.0%
GGTTCAAACTCGTCGTTCAC+GGG - chr4_1:45341847-45341866 None:intergenic 50.0%
GTTGTTCTTGTGCCTTGGAG+TGG - chr4_1:45340811-45340830 None:intergenic 50.0%
GGCAAGTTGTTCTTGTGCCT+TGG - chr4_1:45340816-45340835 None:intergenic 50.0%
TACCTTGTGACACTTGGCCT+TGG - chr4_1:45341112-45341131 None:intergenic 50.0%
TGGCCTAGGTTCAAACTCAG+AGG - chr4_1:45341173-45341192 None:intergenic 50.0%
GCTACAAAGTATGACGGCGA+TGG + chr4_1:45341196-45341215 Msa0549970:CDS 50.0%
AAGTATGACGGCGATGGTGA+AGG + chr4_1:45341202-45341221 Msa0549970:CDS 50.0%
TACCTTGTCGCACTTGGTCT+GGG - chr4_1:45341718-45341737 None:intergenic 50.0%
ATACCTTGTCGCACTTGGTC+TGG - chr4_1:45341719-45341738 None:intergenic 50.0%
CCAAGTGCGACAAGGTATGA+CGG + chr4_1:45341721-45341740 Msa0549970:intron 50.0%
GGTTCAAACCCGTCGTTCAT+CGG - chr4_1:45341772-45341791 None:intergenic 50.0%
GGTTCAAACTCGTCGTTCAC+GGG - chr4_1:45341847-45341866 None:intergenic 50.0%
AGCCAAGGCCAAGTGTCACA+AGG + chr4_1:45341107-45341126 Msa0549970:CDS 55.0%
AACCCAGACCAAGTGCGACA+AGG + chr4_1:45341713-45341732 Msa0549970:CDS 55.0%
CCGTCATACCTTGTCGCACT+TGG - chr4_1:45341724-45341743 None:intergenic 55.0%
AGCCAAGGCCAAGTGTCACA+AGG + chr4_1:45341107-45341126 Msa0549970:CDS 55.0%
AACCCAGACCAAGTGCGACA+AGG + chr4_1:45341713-45341732 Msa0549970:CDS 55.0%
CCGTCATACCTTGTCGCACT+TGG - chr4_1:45341724-45341743 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 45340810 45341882 45340810 ID=Msa0549970;Name=Msa0549970
chr4_1 mRNA 45340810 45341882 45340810 ID=Msa0549970-mRNA-1;Parent=Msa0549970;Name=Msa0549970-mRNA-1;_AED=0.17;_eAED=0.20;_QI=0|0.2|0|1|0|0|6|0|291
chr4_1 exon 45340810 45340839 45340810 ID=Msa0549970-mRNA-1:exon:11927;Parent=Msa0549970-mRNA-1
chr4_1 exon 45340893 45341009 45340893 ID=Msa0549970-mRNA-1:exon:11928;Parent=Msa0549970-mRNA-1
chr4_1 exon 45341079 45341257 45341079 ID=Msa0549970-mRNA-1:exon:11929;Parent=Msa0549970-mRNA-1
chr4_1 exon 45341285 45341501 45341285 ID=Msa0549970-mRNA-1:exon:11930;Parent=Msa0549970-mRNA-1
chr4_1 exon 45341532 45341734 45341532 ID=Msa0549970-mRNA-1:exon:11931;Parent=Msa0549970-mRNA-1
chr4_1 exon 45341756 45341882 45341756 ID=Msa0549970-mRNA-1:exon:11932;Parent=Msa0549970-mRNA-1
chr4_1 CDS 45340810 45340839 45340810 ID=Msa0549970-mRNA-1:cds;Parent=Msa0549970-mRNA-1
chr4_1 CDS 45340893 45341009 45340893 ID=Msa0549970-mRNA-1:cds;Parent=Msa0549970-mRNA-1
chr4_1 CDS 45341079 45341257 45341079 ID=Msa0549970-mRNA-1:cds;Parent=Msa0549970-mRNA-1
chr4_1 CDS 45341285 45341501 45341285 ID=Msa0549970-mRNA-1:cds;Parent=Msa0549970-mRNA-1
chr4_1 CDS 45341532 45341734 45341532 ID=Msa0549970-mRNA-1:cds;Parent=Msa0549970-mRNA-1
chr4_1 CDS 45341756 45341882 45341756 ID=Msa0549970-mRNA-1:cds;Parent=Msa0549970-mRNA-1
Gene Sequence

>Msa0549970

ACTCCAAGGCACAAGAACAACTTGCCAAAGGTGGTCACAGAAGAATTTCAACCAAGACCCACAATTTCAGCTTATGGTGATGACAAGATTAATATAAAGGTAACTGAGCATCCCGCAACAAACACACTAAATATCATAGAAAAAAAGGTAACTGAGAAACATATAAAAGATTTTGAGCCAAGGCCAAGTGTCACAAGGTATGATGGTGATGGTTACAAAAGCGAGAAGTTATGGGTGTCCTCTGAGTTTGAACCTAGGCCAAGTGCTACAAAGTATGACGGCGATGGTGAAGGTTATATGACTATTAAACTACCAAGGAATGACGAGTATGACGGTGATGGTTATAAGAGTATAAAACTACGGGGGAATGATGAGTTTGAACCCAGACCAAGTGTTACAAGGTATGACGGTGACGATTATCAGAGTACAAAACTATCGGTGAATAATGATTTTGAACCCATACCAAGTGTTACAAAGTATGGCAGTGATGGTTATAAGAGTACAAAACTATCGGTGAATGGTGAGTTTGAACCCATACCAAGTAGTATTAAACTACCGGTTAATGACGAGTTTGAACCCAGACCAAGTGCTACAAAGTATGATGGTGATGGTTATCAGAGTACAAAACTATCGGTGAATAGTGAGTTTGAACCCATACCAAGTGTTACAAGTTATGGCAACGATGGCTATAAGAGTATGAAACTACCGATTAATGACGAGTTTGAACCCAGACCAAGTGCGACAAGAAAAATGAAACTACCGATGAACGACGGGTTTGAACCCAGACCAAGTGTTACAAAGTATGATGGTGATAATAACAAAAGCAAGAAGCTACCCGTGAACGACGAGTTTGAACCTAGGCCAAGTGCCACC

Protein sequence

>Msa0549970

TPRHKNNLPKVVTEEFQPRPTISAYGDDKINIKVTEHPATNTLNIIEKKVTEKHIKDFEPRPSVTRYDGDGYKSEKLWVSSEFEPRPSATKYDGDGEGYMTIKLPRNDEYDGDGYKSIKLRGNDEFEPRPSVTRYDGDDYQSTKLSVNNDFEPIPSVTKYGSDGYKSTKLSVNGEFEPIPSSIKLPVNDEFEPRPSATKYDGDGYQSTKLSVNSEFEPIPSVTSYGNDGYKSMKLPINDEFEPRPSATRKMKLPMNDGFEPRPSVTKYDGDNNKSKKLPVNDEFEPRPSAT