Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437850 | XP_003592788.3 | 94.720 | 322 | 15 | 2 | 1 | 320 | 5 | 326 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437850 | sp|Q94JV5|NILP2_ARATH | 72.509 | 291 | 79 | 1 | 24 | 314 | 18 | 307 | 1.70e-159 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437850 | A0A396JWP0 | 94.720 | 322 | 15 | 2 | 1 | 320 | 5 | 326 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030320 | Msa0437850 | 0.845288 | 4.458277e-59 | -8.615850e-47 |
| Msa0032040 | Msa0437850 | 0.802852 | 4.608171e-49 | -8.615850e-47 |
| Msa0046000 | Msa0437850 | 0.917087 | 8.129379e-86 | -8.615850e-47 |
| Msa0047760 | Msa0437850 | 0.807446 | 5.034508e-50 | -8.615850e-47 |
| Msa0077920 | Msa0437850 | 0.821724 | 3.467858e-53 | -8.615850e-47 |
| Msa0091340 | Msa0437850 | 0.802675 | 5.011945e-49 | -8.615850e-47 |
| Msa0172110 | Msa0437850 | 0.824875 | 6.367874e-54 | -8.615850e-47 |
| Msa0177570 | Msa0437850 | 0.812312 | 4.517816e-51 | -8.615850e-47 |
| Msa0235020 | Msa0437850 | -0.802372 | 5.787650e-49 | -8.615850e-47 |
| Msa0437850 | Msa0471080 | 0.817283 | 3.573408e-52 | -8.615850e-47 |
| Msa0437850 | Msa0568810 | 0.830592 | 2.692094e-55 | -8.615850e-47 |
| Msa0437850 | Msa0712100 | 0.814386 | 1.581730e-51 | -8.615850e-47 |
| Msa0437850 | Msa0753530 | 0.804869 | 1.756424e-49 | -8.615850e-47 |
| Msa0437850 | Msa0793160 | 0.945430 | 3.097722e-104 | -8.615850e-47 |
| Msa0437850 | Msa0807170 | 0.806571 | 7.709925e-50 | -8.615850e-47 |
| Msa0437850 | Msa1081650 | 0.808719 | 2.697246e-50 | -8.615850e-47 |
| Msa0437850 | Msa1151970 | 0.821161 | 4.677577e-53 | -8.615850e-47 |
| Msa0437850 | Msa1198820 | 0.813786 | 2.146307e-51 | -8.615850e-47 |
| Msa0437850 | Msa1391600 | 0.812013 | 5.247589e-51 | -8.615850e-47 |
| Msa0251140 | Msa0437850 | 0.814503 | 1.490325e-51 | -8.615850e-47 |
| Msa0273420 | Msa0437850 | -0.801866 | 7.355909e-49 | -8.615850e-47 |
| Msa0312780 | Msa0437850 | 0.805832 | 1.103192e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437850 | MtrunA17_Chr1g0213231 | 94.720 | 322 | 15 | 2 | 1 | 320 | 5 | 326 | 0.0 | 610 |
| Msa0437850 | MtrunA17_Chr3g0136101 | 33.213 | 277 | 168 | 7 | 42 | 310 | 75 | 342 | 1.01e-44 | 156 |
| Msa0437850 | MtrunA17_Chr2g0321561 | 26.962 | 293 | 185 | 12 | 42 | 316 | 8 | 289 | 5.29e-23 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437850 | AT4G08790.1 | 72.509 | 291 | 79 | 1 | 24 | 314 | 18 | 307 | 1.72e-160 | 450 |
| Msa0437850 | AT5G12040.1 | 31.734 | 271 | 174 | 5 | 45 | 310 | 90 | 354 | 3.69e-44 | 155 |
| Msa0437850 | AT5G12040.2 | 33.981 | 206 | 127 | 4 | 45 | 245 | 90 | 291 | 2.56e-34 | 127 |
| Msa0437850 | AT2G27450.1 | 26.280 | 293 | 187 | 11 | 42 | 316 | 9 | 290 | 1.27e-22 | 96.3 |
| Msa0437850 | AT2G27450.3 | 26.027 | 219 | 137 | 9 | 112 | 316 | 4 | 211 | 2.29e-14 | 71.6 |
| Msa0437850 | AT5G22300.1 | 24.483 | 290 | 163 | 12 | 43 | 293 | 36 | 308 | 1.17e-12 | 68.2 |
| Msa0437850 | AT5G64370.1 | 23.755 | 261 | 175 | 5 | 60 | 302 | 115 | 369 | 9.34e-11 | 62.8 |
Find 87 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGGATGGACCTATTA+TGG | 0.195841 | 3_3:+1864568 | Msa0437850:CDS |
| ACGAGAGCAGGTGGAGAAAT+TGG | 0.233932 | 3_3:-1864346 | None:intergenic |
| GCTTCTCTATAGTACTTAAT+TGG | 0.237876 | 3_3:+1868101 | Msa0437850:exon |
| ATCCTCAGGATAATCAAATA+AGG | 0.266788 | 3_3:-1868201 | None:intergenic |
| CTTGGAGGCTTTCAAGAAAA+AGG | 0.272049 | 3_3:+1865117 | Msa0437850:CDS |
| TGGATTCTTAAAAGTATATA+TGG | 0.290031 | 3_3:+1864121 | Msa0437850:five_prime_UTR |
| ATGTGCCTGCTCCATGTTAA+AGG | 0.308191 | 3_3:+1868320 | Msa0437850:three_prime_UTR |
| GACAGTCCTATTGGGCGTTT+GGG | 0.332728 | 3_3:+1866622 | Msa0437850:CDS |
| AGACAGTCCTATTGGGCGTT+TGG | 0.340805 | 3_3:+1866621 | Msa0437850:CDS |
| CACATTGATTATCGATCCTT+GGG | 0.353661 | 3_3:+1867326 | Msa0437850:CDS |
| AGGTTTGATGTGGATGTTCC+TGG | 0.357362 | 3_3:+1866170 | Msa0437850:intron |
| TATTAGTATTGCTCAACCTT+TGG | 0.361087 | 3_3:+1864553 | Msa0437850:CDS |
| CAAATGATTACCTTAGCAAT+AGG | 0.366454 | 3_3:-1867888 | None:intergenic |
| ACCCCTTTGTGACTATTGAA+TGG | 0.378528 | 3_3:-1868126 | None:intergenic |
| GTTGCAGTAGACAGTCCTAT+TGG | 0.386112 | 3_3:+1866613 | Msa0437850:CDS |
| AAAGGAAGCCATTTGACTTC+TGG | 0.391324 | 3_3:+1868072 | Msa0437850:CDS |
| GAGCAGTATTGGTCCATAAT+AGG | 0.397134 | 3_3:-1864581 | None:intergenic |
| CTAAGGCCCAAACGCCCAAT+AGG | 0.406011 | 3_3:-1866628 | None:intergenic |
| GATGCAGAGAGTCAAGTATT+TGG | 0.408938 | 3_3:+1865088 | Msa0437850:intron |
| CCCACAAAAGAGAATGCTTC+AGG | 0.418744 | 3_3:-1864512 | None:intergenic |
| GTTTCAGATCGTTTGTCTAC+GGG | 0.424933 | 3_3:+1867810 | Msa0437850:intron |
| CCCCTTTGTGACTATTGAAT+GGG | 0.425634 | 3_3:-1868125 | None:intergenic |
| TTGCAGTAGACAGTCCTATT+GGG | 0.433163 | 3_3:+1866614 | Msa0437850:CDS |
| ACACATTGATTATCGATCCT+TGG | 0.433778 | 3_3:+1867325 | Msa0437850:CDS |
| TCAAAGGAAGCTGCATCAGC+TGG | 0.441637 | 3_3:+1864470 | Msa0437850:intron |
| AGTGACTGGTGAAGCACATT+GGG | 0.449806 | 3_3:+1866880 | Msa0437850:CDS |
| TGTTTCAGATCGTTTGTCTA+CGG | 0.457934 | 3_3:+1867809 | Msa0437850:intron |
| ACCAATACTGCTCTTTAGCC+AGG | 0.458330 | 3_3:+1864591 | Msa0437850:CDS |
| TACTTTGACAAGACGAGAGC+AGG | 0.460604 | 3_3:-1864358 | None:intergenic |
| TCCTCAGGATAATCAAATAA+GGG | 0.460892 | 3_3:-1868200 | None:intergenic |
| TTATTTGATTATCCTGAGGA+TGG | 0.465319 | 3_3:+1868203 | Msa0437850:three_prime_UTR |
| AGTATTTGGTTGTCACTTGG+AGG | 0.473114 | 3_3:+1865102 | Msa0437850:CDS |
| GCCTCTCTCTCCGTCGTCGC+CGG | 0.475481 | 3_3:+1864252 | Msa0437850:CDS |
| ACTGTTGTTGGTCGCTTACC+AGG | 0.475755 | 3_3:+1867351 | Msa0437850:CDS |
| GGCAACTCGGACTGAATTAG+TGG | 0.475966 | 3_3:-1864289 | None:intergenic |
| GCAGCTTTCCAGAAGTCAAA+TGG | 0.488007 | 3_3:-1868080 | None:intergenic |
| ATGTGGATGTTCCTGGTGGA+AGG | 0.489621 | 3_3:+1866177 | Msa0437850:CDS |
| GTGCATTGTCCAGATACTAT+TGG | 0.490967 | 3_3:+1866838 | Msa0437850:intron |
| TCAAGTATTTGGTTGTCACT+TGG | 0.491926 | 3_3:+1865099 | Msa0437850:CDS |
| CGGAGAGAGAGGCTTGTAAT+CGG | 0.494702 | 3_3:-1864242 | None:intergenic |
| ACCCATTCAATAGTCACAAA+GGG | 0.504051 | 3_3:+1868124 | Msa0437850:three_prime_UTR |
| ACCTGGCTAAAGAGCAGTAT+TGG | 0.506049 | 3_3:-1864592 | None:intergenic |
| AGGCTTGTAATCGGCGGCGA+CGG | 0.508563 | 3_3:-1864233 | None:intergenic |
| GTCATAGCTGCTGCACAAGC+TGG | 0.511906 | 3_3:+1867270 | Msa0437850:CDS |
| AGTATTGCTCAACCTTTGGA+TGG | 0.516840 | 3_3:+1864557 | Msa0437850:CDS |
| ATTGGAAGCGAGGTCGGTGA+TGG | 0.517816 | 3_3:-1864328 | None:intergenic |
| CAGTTGTTGCGTTTCCAACA+TGG | 0.520574 | 3_3:+1866685 | Msa0437850:CDS |
| AGTGGCCATGATTGAAAAGC+CGG | 0.521401 | 3_3:-1864271 | None:intergenic |
| ATTTGTAACACCCTTTAACA+TGG | 0.527677 | 3_3:-1868331 | None:intergenic |
| CGCAACAACTGATAAAGCTC+AGG | 0.529790 | 3_3:-1866673 | None:intergenic |
| GCCGGCGACGACGGAGAGAG+AGG | 0.539696 | 3_3:-1864253 | None:intergenic |
| GATTGAAAAGCCGGCGACGA+CGG | 0.541039 | 3_3:-1864262 | None:intergenic |
| CTAATACCTGTGCTCCATGT+TGG | 0.546597 | 3_3:-1866699 | None:intergenic |
| TCATTTGAGCTGCGGCAACT+CGG | 0.547963 | 3_3:-1864302 | None:intergenic |
| AACACCCTTTAACATGGAGC+AGG | 0.548062 | 3_3:-1868325 | None:intergenic |
| TCGTTTGTCTACGGGAATTG+TGG | 0.555672 | 3_3:+1867818 | Msa0437850:CDS |
| TGTGCCTGCTCCATGTTAAA+GGG | 0.557169 | 3_3:+1868321 | Msa0437850:three_prime_UTR |
| TCAAATCATAGCAAACACTA+AGG | 0.560660 | 3_3:-1866645 | None:intergenic |
| AGAGAAGATGCCTATTGCTA+AGG | 0.563526 | 3_3:+1867878 | Msa0437850:CDS |
| AATGACAAAAGAGAAAGTTA+TGG | 0.563585 | 3_3:+1867300 | Msa0437850:CDS |
| GCGTTTCCAACATGGAGCAC+AGG | 0.566309 | 3_3:+1866693 | Msa0437850:CDS |
| TCCCTTATTTGATTATCCTG+AGG | 0.567134 | 3_3:+1868199 | Msa0437850:three_prime_UTR |
| GGAGAAATTGGAAGCGAGGT+CGG | 0.567271 | 3_3:-1864334 | None:intergenic |
| GCAGCATTCACTAAAGTGAC+TGG | 0.570698 | 3_3:+1866866 | Msa0437850:CDS |
| TATGATGCGATTGTCATGTT+GGG | 0.576405 | 3_3:+1864173 | Msa0437850:exon |
| ACATTGTATACACCATCCTC+AGG | 0.580937 | 3_3:-1868215 | None:intergenic |
| GTCACTTTAGTGAATGCTGC+GGG | 0.582925 | 3_3:-1866863 | None:intergenic |
| AAGTGACTGGTGAAGCACAT+TGG | 0.586083 | 3_3:+1866879 | Msa0437850:CDS |
| ATATGATGCGATTGTCATGT+TGG | 0.598229 | 3_3:+1864172 | Msa0437850:exon |
| GACCCATTCAATAGTCACAA+AGG | 0.598689 | 3_3:+1868123 | Msa0437850:three_prime_UTR |
| TGTGGATGTTCCTGGTGGAA+GGG | 0.603877 | 3_3:+1866178 | Msa0437850:CDS |
| CATGTTGTTGTAGATGACAC+TGG | 0.606125 | 3_3:+1865168 | Msa0437850:CDS |
| GAGGATGGTGTATACAATGT+TGG | 0.606536 | 3_3:+1868218 | Msa0437850:three_prime_UTR |
| TTTGACAAGACGAGAGCAGG+TGG | 0.616133 | 3_3:-1864355 | None:intergenic |
| GTAGTCTATTTCAATATGAG+AGG | 0.617071 | 3_3:+1868147 | Msa0437850:three_prime_UTR |
| TCTTTATATACCCTTCCACC+AGG | 0.630907 | 3_3:-1866188 | None:intergenic |
| AGGTGGAGAAATTGGAAGCG+AGG | 0.646802 | 3_3:-1864338 | None:intergenic |
| TCCATAATAGGTCCATCCAA+AGG | 0.658806 | 3_3:-1864569 | None:intergenic |
| AGTCACTTTAGTGAATGCTG+CGG | 0.666530 | 3_3:-1866864 | None:intergenic |
| TGTGTATTAAACAAATGTTG+AGG | 0.680661 | 3_3:-1865147 | None:intergenic |
| ACATTGATTATCGATCCTTG+GGG | 0.682126 | 3_3:+1867327 | Msa0437850:CDS |
| AGAGAGAGGCTTGTAATCGG+CGG | 0.684472 | 3_3:-1864239 | None:intergenic |
| GATGGATGTCATTTGAGCTG+CGG | 0.692126 | 3_3:-1864310 | None:intergenic |
| CATTGATTATCGATCCTTGG+GGG | 0.696086 | 3_3:+1867328 | Msa0437850:CDS |
| CCCATTCAATAGTCACAAAG+GGG | 0.702665 | 3_3:+1868125 | Msa0437850:three_prime_UTR |
| TTTGATGTGGATGTTCCTGG+TGG | 0.706744 | 3_3:+1866173 | Msa0437850:CDS |
| ATGTTGTTGTAGATGACACT+GGG | 0.710242 | 3_3:+1865169 | Msa0437850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAATTAATTAAA+AGG | - | chr3_3:1864439-1864458 | None:intergenic | 0.0% |
| !! | TATATATATATATATTAATA+AGG | - | chr3_3:1864742-1864761 | None:intergenic | 0.0% |
| !!! | ATTTATTTATTTGTTTTCAA+AGG | + | chr3_3:1864454-1864473 | Msa0437850:intron | 10.0% |
| !!! | TTTCAATTAATTTTATTTGA+AGG | + | chr3_3:1866150-1866169 | Msa0437850:intron | 10.0% |
| !!! | ATATATCAACATATATTTTG+AGG | + | chr3_3:1864966-1864985 | Msa0437850:intron | 15.0% |
| !! | TAATTGAAAAACAATTAACT+GGG | - | chr3_3:1865931-1865950 | None:intergenic | 15.0% |
| !! | AAAATTTGAATAGTAAATGT+TGG | - | chr3_3:1867217-1867236 | None:intergenic | 15.0% |
| !! | ATGTACCAAAATAAAAAATA+TGG | + | chr3_3:1868173-1868192 | Msa0437850:three_prime_UTR | 15.0% |
| !! | TGTACCAAAATAAAAAATAT+GGG | + | chr3_3:1868174-1868193 | Msa0437850:three_prime_UTR | 15.0% |
| !!! | TGGATTCTTAAAAGTATATA+TGG | + | chr3_3:1864121-1864140 | Msa0437850:five_prime_UTR | 20.0% |
| !!! | TTTTCGGAAGAAAAAAAAAA+GGG | - | chr3_3:1865818-1865837 | None:intergenic | 20.0% |
| !! | AATTGAAAAACAATTAACTG+GGG | - | chr3_3:1865930-1865949 | None:intergenic | 20.0% |
| !! | CTAATTGAAAAACAATTAAC+TGG | - | chr3_3:1865932-1865951 | None:intergenic | 20.0% |
| !!! | TTTTTTGGGATAAAGAATTA+GGG | - | chr3_3:1865958-1865977 | None:intergenic | 20.0% |
| !! | ACATATAGCATAAGTTATTT+GGG | - | chr3_3:1866070-1866089 | None:intergenic | 20.0% |
| !! | AACATATAGCATAAGTTATT+TGG | - | chr3_3:1866071-1866090 | None:intergenic | 20.0% |
| !!! | AAAAATGAGAAGTTTTGATT+AGG | - | chr3_3:1866295-1866314 | None:intergenic | 20.0% |
| !! | TTCATATCACATATAATTGA+AGG | - | chr3_3:1866524-1866543 | None:intergenic | 20.0% |
| !! | TAAAGAAGAGTAAAAAAAGA+CGG | - | chr3_3:1867772-1867791 | None:intergenic | 20.0% |
| ! | TCATAATAAGTCAATCCAAA+CGG | + | chr3_3:1864894-1864913 | Msa0437850:intron | 25.0% |
| ! | TTATAGTATTAAGATCCGTT+TGG | - | chr3_3:1864912-1864931 | None:intergenic | 25.0% |
| ! | TGTGTATTAAACAAATGTTG+AGG | - | chr3_3:1865150-1865169 | None:intergenic | 25.0% |
| !! | GATAAAGTTAATAGTCTTAC+AGG | - | chr3_3:1865224-1865243 | None:intergenic | 25.0% |
| ! | TTCTTAATCTAATGTGTGTT+TGG | + | chr3_3:1865751-1865770 | Msa0437850:intron | 25.0% |
| !! | GTTTTCGGAAGAAAAAAAAA+AGG | - | chr3_3:1865819-1865838 | None:intergenic | 25.0% |
| ! | ATTGAAAAACAATTAACTGG+GGG | - | chr3_3:1865929-1865948 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGATAAAGAATT+AGG | - | chr3_3:1865959-1865978 | None:intergenic | 25.0% |
| !! | TCTTTCTGTTTGTCTTATTA+TGG | + | chr3_3:1866114-1866133 | Msa0437850:intron | 25.0% |
| !!! | TTTTATTTGAAGGTTTGATG+TGG | + | chr3_3:1866160-1866179 | Msa0437850:intron | 25.0% |
| !! | GAAAGTAATTTTACAGAATC+AGG | + | chr3_3:1866209-1866228 | Msa0437850:CDS | 25.0% |
| !!! | AGAAGTTTTGATTAGGATTA+AGG | - | chr3_3:1866288-1866307 | None:intergenic | 25.0% |
| !! | CAGTTAAAGTTTTCAAATGT+CGG | + | chr3_3:1866403-1866422 | Msa0437850:intron | 25.0% |
| ! | AACACTTATCTATGATATGA+AGG | + | chr3_3:1866547-1866566 | Msa0437850:intron | 25.0% |
| !! | AGGATATTGTTTTCATATCT+TGG | + | chr3_3:1866567-1866586 | Msa0437850:intron | 25.0% |
| !!! | TTGCTTTTCTGCTTAAAATA+TGG | + | chr3_3:1866731-1866750 | Msa0437850:intron | 25.0% |
| !! | TGCTTTTCTGCTTAAAATAT+GGG | + | chr3_3:1866732-1866751 | Msa0437850:intron | 25.0% |
| !!! | TCCTAAACAGCATATTTTAA+GGG | - | chr3_3:1866799-1866818 | None:intergenic | 25.0% |
| !! | ATCCTAAACAGCATATTTTA+AGG | - | chr3_3:1866800-1866819 | None:intergenic | 25.0% |
| ! | GTAAGAATATACATGAAGAT+GGG | - | chr3_3:1867020-1867039 | None:intergenic | 25.0% |
| ! | AGTAAGAATATACATGAAGA+TGG | - | chr3_3:1867021-1867040 | None:intergenic | 25.0% |
| ! | AATGACAAAAGAGAAAGTTA+TGG | + | chr3_3:1867300-1867319 | Msa0437850:CDS | 25.0% |
| ! | GATCTTATATGATATTTCTC+AGG | - | chr3_3:1867510-1867529 | None:intergenic | 25.0% |
| !!! | TCCAATGAAGTTTTTTTTAG+TGG | + | chr3_3:1867673-1867692 | Msa0437850:intron | 25.0% |
| ! | ACCACTAAAAAAAACTTCAT+TGG | - | chr3_3:1867677-1867696 | None:intergenic | 25.0% |
| ! | GATGTATGCATCAATAATAA+AGG | - | chr3_3:1868033-1868052 | None:intergenic | 25.0% |
| !!! | GAGTCCCATATTTTTTATTT+TGG | - | chr3_3:1868181-1868200 | None:intergenic | 25.0% |
| TATTAGTATTGCTCAACCTT+TGG | + | chr3_3:1864553-1864572 | Msa0437850:CDS | 30.0% | |
| TATGAGTCTGTTTGGATAAA+TGG | + | chr3_3:1864648-1864667 | Msa0437850:intron | 30.0% | |
| GTTGATATATAGACACTGTT+TGG | - | chr3_3:1864956-1864975 | None:intergenic | 30.0% | |
| !! | TATATTTTGAGGACCTTACT+CGG | + | chr3_3:1864977-1864996 | Msa0437850:intron | 30.0% |
| AACTCAATATTAACCGAGTA+AGG | - | chr3_3:1864993-1865012 | None:intergenic | 30.0% | |
| !! | TTTCCATCTGAGTATTGATT+TGG | + | chr3_3:1865259-1865278 | Msa0437850:intron | 30.0% |
| ! | TAGTTGGATTTACTGTTTTG+AGG | - | chr3_3:1865536-1865555 | None:intergenic | 30.0% |
| AATTTATCCTCAAAGCAGAA+AGG | + | chr3_3:1865583-1865602 | Msa0437850:intron | 30.0% | |
| CAAATGACAATGAATGTGTT+TGG | - | chr3_3:1865888-1865907 | None:intergenic | 30.0% | |
| ATTTGATAAAAGCCGTAACA+TGG | + | chr3_3:1865903-1865922 | Msa0437850:intron | 30.0% | |
| !!! | TGGGTTTTGAGTTGTTTTTT+GGG | - | chr3_3:1865972-1865991 | None:intergenic | 30.0% |
| !!! | TTGGGTTTTGAGTTGTTTTT+TGG | - | chr3_3:1865973-1865992 | None:intergenic | 30.0% |
| CACTCTAGCTGATTAAATTT+GGG | - | chr3_3:1865991-1866010 | None:intergenic | 30.0% | |
| TCACTCTAGCTGATTAAATT+TGG | - | chr3_3:1865992-1866011 | None:intergenic | 30.0% | |
| !! | GAGTTGATAAACAAGTCAAT+AGG | - | chr3_3:1866048-1866067 | None:intergenic | 30.0% |
| TAAGACAAACAGAAAGAAGT+TGG | - | chr3_3:1866111-1866130 | None:intergenic | 30.0% | |
| ! | GTAATTTTACAGAATCAGGT+AGG | + | chr3_3:1866213-1866232 | Msa0437850:intron | 30.0% |
| TAGGATATTTACTCTTGACA+TGG | + | chr3_3:1866232-1866251 | Msa0437850:intron | 30.0% | |
| ATTTCACCCAAGAAAAATAG+AGG | + | chr3_3:1866339-1866358 | Msa0437850:intron | 30.0% | |
| TTTCACCCAAGAAAAATAGA+GGG | + | chr3_3:1866340-1866359 | Msa0437850:intron | 30.0% | |
| TCAAATCATAGCAAACACTA+AGG | - | chr3_3:1866648-1866667 | None:intergenic | 30.0% | |
| !! | CCTAAACAGCATATTTTAAG+GGG | - | chr3_3:1866798-1866817 | None:intergenic | 30.0% |
| GATTTAATGAATGCCTTATC+AGG | + | chr3_3:1867248-1867267 | Msa0437850:intron | 30.0% | |
| !!! | CTATTTTGACTATCATTACG+AGG | - | chr3_3:1867475-1867494 | None:intergenic | 30.0% |
| AAAAAAAGACGGTATCATTG+TGG | - | chr3_3:1867761-1867780 | None:intergenic | 30.0% | |
| CAAATGATTACCTTAGCAAT+AGG | - | chr3_3:1867891-1867910 | None:intergenic | 30.0% | |
| GCTTCTCTATAGTACTTAAT+TGG | + | chr3_3:1868101-1868120 | Msa0437850:exon | 30.0% | |
| GTAGTCTATTTCAATATGAG+AGG | + | chr3_3:1868147-1868166 | Msa0437850:three_prime_UTR | 30.0% | |
| TCCTCAGGATAATCAAATAA+GGG | - | chr3_3:1868203-1868222 | None:intergenic | 30.0% | |
| ATCCTCAGGATAATCAAATA+AGG | - | chr3_3:1868204-1868223 | None:intergenic | 30.0% | |
| TTATTTGATTATCCTGAGGA+TGG | + | chr3_3:1868203-1868222 | Msa0437850:three_prime_UTR | 30.0% | |
| ATTTGTAACACCCTTTAACA+TGG | - | chr3_3:1868334-1868353 | None:intergenic | 30.0% | |
| ATATGATGCGATTGTCATGT+TGG | + | chr3_3:1864172-1864191 | Msa0437850:exon | 35.0% | |
| TATGATGCGATTGTCATGTT+GGG | + | chr3_3:1864173-1864192 | Msa0437850:exon | 35.0% | |
| AGAATAAAAGCAAGCAAACC+TGG | - | chr3_3:1864612-1864631 | None:intergenic | 35.0% | |
| GTTCATGATATGAGTCTGTT+TGG | + | chr3_3:1864640-1864659 | Msa0437850:intron | 35.0% | |
| ACTATGAGCTTATTGACGTA+AGG | - | chr3_3:1864715-1864734 | None:intergenic | 35.0% | |
| TTAACCAACCACCTTTACAA+AGG | + | chr3_3:1864850-1864869 | Msa0437850:intron | 35.0% | |
| AACATAAGCCTTTGTAAAGG+TGG | - | chr3_3:1864861-1864880 | None:intergenic | 35.0% | |
| GCTAACATAAGCCTTTGTAA+AGG | - | chr3_3:1864864-1864883 | None:intergenic | 35.0% | |
| TCAAGTATTTGGTTGTCACT+TGG | + | chr3_3:1865099-1865118 | Msa0437850:CDS | 35.0% | |
| ATGTTGTTGTAGATGACACT+GGG | + | chr3_3:1865169-1865188 | Msa0437850:CDS | 35.0% | |
| ! | CAGGTGTATTTTTCTGTAAG+TGG | - | chr3_3:1865205-1865224 | None:intergenic | 35.0% |
| ACACCAAATCAATACTCAGA+TGG | - | chr3_3:1865265-1865284 | None:intergenic | 35.0% | |
| TGCATGAGAAGAATGAGAAA+TGG | + | chr3_3:1865435-1865454 | Msa0437850:intron | 35.0% | |
| AAATGATCCTTTCTGCTTTG+AGG | - | chr3_3:1865593-1865612 | None:intergenic | 35.0% | |
| ! | AAAATGTTGCTTCTGTGTCA+TGG | - | chr3_3:1865726-1865745 | None:intergenic | 35.0% |
| AACAAGTATTACCGCTATAG+CGG | + | chr3_3:1866020-1866039 | Msa0437850:intron | 35.0% | |
| ! | AGTTGGTTTCTGATTTCAAG+AGG | - | chr3_3:1866094-1866113 | None:intergenic | 35.0% |
| TTACTCTTGACATGGTATCA+AGG | + | chr3_3:1866240-1866259 | Msa0437850:intron | 35.0% | |
| ACATGGTATCAAGGCTAAAT+GGG | + | chr3_3:1866249-1866268 | Msa0437850:intron | 35.0% | |
| !! | AGGTTCCCTCTATTTTTCTT+GGG | - | chr3_3:1866348-1866367 | None:intergenic | 35.0% |
| !! | AAGGTTCCCTCTATTTTTCT+TGG | - | chr3_3:1866349-1866368 | None:intergenic | 35.0% |
| ! | AGTAAGGTTCTTTCTAGGAA+AGG | - | chr3_3:1866368-1866387 | None:intergenic | 35.0% |
| TTTCCTAGAAAGAACCTTAC+TGG | + | chr3_3:1866367-1866386 | Msa0437850:intron | 35.0% | |
| TTTCCAGTAAGGTTCTTTCT+AGG | - | chr3_3:1866373-1866392 | None:intergenic | 35.0% | |
| TTGAAGGAAACGTATATCGT+TGG | - | chr3_3:1866508-1866527 | None:intergenic | 35.0% | |
| !!! | CATATCTTGGTGATGTTTTC+AGG | + | chr3_3:1866580-1866599 | Msa0437850:intron | 35.0% |
| TTCTGCTTAAAATATGGGAG+TGG | + | chr3_3:1866737-1866756 | Msa0437850:intron | 35.0% | |
| ATCATCTCCAGTGAAAAAAC+TGG | + | chr3_3:1866760-1866779 | Msa0437850:intron | 35.0% | |
| !!! | ATTGTCTCCAGTTTTTTCAC+TGG | - | chr3_3:1866770-1866789 | None:intergenic | 35.0% |
| !! | AAACAGCATATTTTAAGGGG+AGG | - | chr3_3:1866795-1866814 | None:intergenic | 35.0% |
| ! | CCCCTTAAAATATGCTGTTT+AGG | + | chr3_3:1866795-1866814 | Msa0437850:intron | 35.0% |
| GGAGAGTTGAAGAAAGTAAT+TGG | - | chr3_3:1867168-1867187 | None:intergenic | 35.0% | |
| AGTTGTTAGAAACGTTAGTG+TGG | - | chr3_3:1867189-1867208 | None:intergenic | 35.0% | |
| ! | ACACATTGATTATCGATCCT+TGG | + | chr3_3:1867325-1867344 | Msa0437850:CDS | 35.0% |
| ! | CACATTGATTATCGATCCTT+GGG | + | chr3_3:1867326-1867345 | Msa0437850:CDS | 35.0% |
| ! | ACATTGATTATCGATCCTTG+GGG | + | chr3_3:1867327-1867346 | Msa0437850:CDS | 35.0% |
| ! | GAAGTATCAAGTTTCTTACC+TGG | - | chr3_3:1867372-1867391 | None:intergenic | 35.0% |
| TTACGAGGAAGAAAGAAACA+AGG | - | chr3_3:1867460-1867479 | None:intergenic | 35.0% | |
| AAGATCATATGTATGAGCTG+AGG | + | chr3_3:1867524-1867543 | Msa0437850:intron | 35.0% | |
| TGTTTCAGATCGTTTGTCTA+CGG | + | chr3_3:1867809-1867828 | Msa0437850:intron | 35.0% | |
| !! | TTCCATTCTCTAGTATTGGT+CGG | - | chr3_3:1867930-1867949 | None:intergenic | 35.0% |
| ACCAATACTAGAGAATGGAA+TGG | + | chr3_3:1867930-1867949 | Msa0437850:intron | 35.0% | |
| TCCATTCCATTCTCTAGTAT+TGG | - | chr3_3:1867934-1867953 | None:intergenic | 35.0% | |
| ACCCATTCAATAGTCACAAA+GGG | + | chr3_3:1868124-1868143 | Msa0437850:three_prime_UTR | 35.0% | |
| ! | TCCCTTATTTGATTATCCTG+AGG | + | chr3_3:1868199-1868218 | Msa0437850:three_prime_UTR | 35.0% |
| !! | TCCTGAAGCATTCTCTTTTG+TGG | + | chr3_3:1864511-1864530 | Msa0437850:CDS | 40.0% |
| !! | CCTGAAGCATTCTCTTTTGT+GGG | + | chr3_3:1864512-1864531 | Msa0437850:CDS | 40.0% |
| ! | TCTTTTGTGGGTGCTAAAGA+TGG | + | chr3_3:1864524-1864543 | Msa0437850:CDS | 40.0% |
| AGTATTGCTCAACCTTTGGA+TGG | + | chr3_3:1864557-1864576 | Msa0437850:CDS | 40.0% | |
| ACCTTTGGATGGACCTATTA+TGG | + | chr3_3:1864568-1864587 | Msa0437850:CDS | 40.0% | |
| TCCATAATAGGTCCATCCAA+AGG | - | chr3_3:1864572-1864591 | None:intergenic | 40.0% | |
| !! | GAGCAGTATTGGTCCATAAT+AGG | - | chr3_3:1864584-1864603 | None:intergenic | 40.0% |
| ACATAAGAGCTTATAGCACG+AGG | + | chr3_3:1864689-1864708 | Msa0437850:intron | 40.0% | |
| TAAGCCTTTGTAAAGGTGGT+TGG | - | chr3_3:1864857-1864876 | None:intergenic | 40.0% | |
| GATGCAGAGAGTCAAGTATT+TGG | + | chr3_3:1865088-1865107 | Msa0437850:intron | 40.0% | |
| ! | AGTATTTGGTTGTCACTTGG+AGG | + | chr3_3:1865102-1865121 | Msa0437850:CDS | 40.0% |
| CTTGGAGGCTTTCAAGAAAA+AGG | + | chr3_3:1865117-1865136 | Msa0437850:CDS | 40.0% | |
| CATGTTGTTGTAGATGACAC+TGG | + | chr3_3:1865168-1865187 | Msa0437850:CDS | 40.0% | |
| GCAACACAAACGCAAGTAAA+CGG | + | chr3_3:1865363-1865382 | Msa0437850:intron | 40.0% | |
| ACGGTTGGAACAAGAGATTA+TGG | + | chr3_3:1865382-1865401 | Msa0437850:intron | 40.0% | |
| ACGAAGAAGTAGAGTAAGAG+AGG | + | chr3_3:1865407-1865426 | Msa0437850:intron | 40.0% | |
| CGAAGAAGTAGAGTAAGAGA+GGG | + | chr3_3:1865408-1865427 | Msa0437850:intron | 40.0% | |
| GAGAAGAATGAGAAATGGAG+CGG | + | chr3_3:1865440-1865459 | Msa0437850:intron | 40.0% | |
| AGAAGAATGAGAAATGGAGC+GGG | + | chr3_3:1865441-1865460 | Msa0437850:intron | 40.0% | |
| ATCCAACTACTCTGTGTGTT+TGG | + | chr3_3:1865547-1865566 | Msa0437850:intron | 40.0% | |
| TCCAACTACTCTGTGTGTTT+GGG | + | chr3_3:1865548-1865567 | Msa0437850:intron | 40.0% | |
| ! | GGAGCTCTCAATTGTGTTTT+CGG | - | chr3_3:1865834-1865853 | None:intergenic | 40.0% |
| TCTTTATATACCCTTCCACC+AGG | - | chr3_3:1866191-1866210 | None:intergenic | 40.0% | |
| GACATGGTATCAAGGCTAAA+TGG | + | chr3_3:1866248-1866267 | Msa0437850:intron | 40.0% | |
| GAACCTTACTGGAAAATCAG+AGG | + | chr3_3:1866378-1866397 | Msa0437850:intron | 40.0% | |
| ! | GAACCTCTGATTTTCCAGTA+AGG | - | chr3_3:1866384-1866403 | None:intergenic | 40.0% |
| ! | CTGACTATGTCGTTTCTAAG+AGG | - | chr3_3:1866432-1866451 | None:intergenic | 40.0% |
| TTGCAGTAGACAGTCCTATT+GGG | + | chr3_3:1866614-1866633 | Msa0437850:CDS | 40.0% | |
| GTGCATTGTCCAGATACTAT+TGG | + | chr3_3:1866838-1866857 | Msa0437850:intron | 40.0% | |
| ! | AGTCACTTTAGTGAATGCTG+CGG | - | chr3_3:1866867-1866886 | None:intergenic | 40.0% |
| AAGATGGGAATGATGAAAGC+AGG | - | chr3_3:1867005-1867024 | None:intergenic | 40.0% | |
| ! | CATTGATTATCGATCCTTGG+GGG | + | chr3_3:1867328-1867347 | Msa0437850:CDS | 40.0% |
| GAGGAAGAAAGAAACAAGGA+AGG | - | chr3_3:1867456-1867475 | None:intergenic | 40.0% | |
| TGTAATACACCCCACTTAGT+GGG | - | chr3_3:1867623-1867642 | None:intergenic | 40.0% | |
| GTTTCAGATCGTTTGTCTAC+GGG | + | chr3_3:1867810-1867829 | Msa0437850:intron | 40.0% | |
| AGAGAAGATGCCTATTGCTA+AGG | + | chr3_3:1867878-1867897 | Msa0437850:CDS | 40.0% | |
| !! | TCCATTCTCTAGTATTGGTC+GGG | - | chr3_3:1867929-1867948 | None:intergenic | 40.0% |
| ! | GTACCTTTTCGTTTCAGCAA+AGG | + | chr3_3:1868054-1868073 | Msa0437850:intron | 40.0% |
| CTTCCTTTGCTGAAACGAAA+AGG | - | chr3_3:1868060-1868079 | None:intergenic | 40.0% | |
| ! | AAAGGAAGCCATTTGACTTC+TGG | + | chr3_3:1868072-1868091 | Msa0437850:CDS | 40.0% |
| GACCCATTCAATAGTCACAA+AGG | + | chr3_3:1868123-1868142 | Msa0437850:three_prime_UTR | 40.0% | |
| CCCCTTTGTGACTATTGAAT+GGG | - | chr3_3:1868128-1868147 | None:intergenic | 40.0% | |
| CCCATTCAATAGTCACAAAG+GGG | + | chr3_3:1868125-1868144 | Msa0437850:three_prime_UTR | 40.0% | |
| ACCCCTTTGTGACTATTGAA+TGG | - | chr3_3:1868129-1868148 | None:intergenic | 40.0% | |
| ACATTGTATACACCATCCTC+AGG | - | chr3_3:1868218-1868237 | None:intergenic | 40.0% | |
| GAGGATGGTGTATACAATGT+TGG | + | chr3_3:1868218-1868237 | Msa0437850:three_prime_UTR | 40.0% | |
| AGTGGCCATGATTGAAAAGC+CGG | - | chr3_3:1864274-1864293 | None:intergenic | 45.0% | |
| ! | GATGGATGTCATTTGAGCTG+CGG | - | chr3_3:1864313-1864332 | None:intergenic | 45.0% |
| TACTTTGACAAGACGAGAGC+AGG | - | chr3_3:1864361-1864380 | None:intergenic | 45.0% | |
| CCCACAAAAGAGAATGCTTC+AGG | - | chr3_3:1864515-1864534 | None:intergenic | 45.0% | |
| ACCAATACTGCTCTTTAGCC+AGG | + | chr3_3:1864591-1864610 | Msa0437850:CDS | 45.0% | |
| ACCTGGCTAAAGAGCAGTAT+TGG | - | chr3_3:1864595-1864614 | None:intergenic | 45.0% | |
| CACAAACGCAAGTAAACGGT+TGG | + | chr3_3:1865367-1865386 | Msa0437850:intron | 45.0% | |
| GAAGAATGAGAAATGGAGCG+GGG | + | chr3_3:1865442-1865461 | Msa0437850:intron | 45.0% | |
| AAGAATGAGAAATGGAGCGG+GGG | + | chr3_3:1865443-1865462 | Msa0437850:intron | 45.0% | |
| ACCCAAACACACAGAGTAGT+TGG | - | chr3_3:1865552-1865571 | None:intergenic | 45.0% | |
| CAATTGAGAGCTCCATACAG+AGG | + | chr3_3:1865840-1865859 | Msa0437850:intron | 45.0% | |
| AAGAGCTCCTAACCTCTGTA+TGG | - | chr3_3:1865855-1865874 | None:intergenic | 45.0% | |
| ATTAACTGGGGGCCATGTTA+CGG | - | chr3_3:1865918-1865937 | None:intergenic | 45.0% | |
| AGGTTTGATGTGGATGTTCC+TGG | + | chr3_3:1866170-1866189 | Msa0437850:intron | 45.0% | |
| TTTGATGTGGATGTTCCTGG+TGG | + | chr3_3:1866173-1866192 | Msa0437850:CDS | 45.0% | |
| !!! | CTTGGTGATGTTTTCAGGCA+AGG | + | chr3_3:1866585-1866604 | Msa0437850:intron | 45.0% |
| GTTGCAGTAGACAGTCCTAT+TGG | + | chr3_3:1866613-1866632 | Msa0437850:CDS | 45.0% | |
| CGCAACAACTGATAAAGCTC+AGG | - | chr3_3:1866676-1866695 | None:intergenic | 45.0% | |
| CAGTTGTTGCGTTTCCAACA+TGG | + | chr3_3:1866685-1866704 | Msa0437850:CDS | 45.0% | |
| CTAATACCTGTGCTCCATGT+TGG | - | chr3_3:1866702-1866721 | None:intergenic | 45.0% | |
| ! | GTCACTTTAGTGAATGCTGC+GGG | - | chr3_3:1866866-1866885 | None:intergenic | 45.0% |
| GCAGCATTCACTAAAGTGAC+TGG | + | chr3_3:1866866-1866885 | Msa0437850:CDS | 45.0% | |
| AAGTGACTGGTGAAGCACAT+TGG | + | chr3_3:1866879-1866898 | Msa0437850:CDS | 45.0% | |
| AGTGACTGGTGAAGCACATT+GGG | + | chr3_3:1866880-1866899 | Msa0437850:CDS | 45.0% | |
| CCTAGCAATGCTTCTCTTCT+CGG | + | chr3_3:1866963-1866982 | Msa0437850:intron | 45.0% | |
| ACAGGACAGCAAAAACAACC+AGG | + | chr3_3:1867591-1867610 | Msa0437850:intron | 45.0% | |
| CTGTAATACACCCCACTTAG+TGG | - | chr3_3:1867624-1867643 | None:intergenic | 45.0% | |
| CACTAAGTGGGGTGTATTAC+AGG | + | chr3_3:1867622-1867641 | Msa0437850:intron | 45.0% | |
| AACAGTTTGAATCTCCAGCG+AGG | - | chr3_3:1867711-1867730 | None:intergenic | 45.0% | |
| TCGTTTGTCTACGGGAATTG+TGG | + | chr3_3:1867818-1867837 | Msa0437850:CDS | 45.0% | |
| ACCCGACCAATACTAGAGAA+TGG | + | chr3_3:1867925-1867944 | Msa0437850:intron | 45.0% | |
| GCAGCTTTCCAGAAGTCAAA+TGG | - | chr3_3:1868083-1868102 | None:intergenic | 45.0% | |
| ATGTGCCTGCTCCATGTTAA+AGG | + | chr3_3:1868320-1868339 | Msa0437850:three_prime_UTR | 45.0% | |
| TGTGCCTGCTCCATGTTAAA+GGG | + | chr3_3:1868321-1868340 | Msa0437850:three_prime_UTR | 45.0% | |
| AACACCCTTTAACATGGAGC+AGG | - | chr3_3:1868328-1868347 | None:intergenic | 45.0% | |
| AGAGAGAGGCTTGTAATCGG+CGG | - | chr3_3:1864242-1864261 | None:intergenic | 50.0% | |
| CGGAGAGAGAGGCTTGTAAT+CGG | - | chr3_3:1864245-1864264 | None:intergenic | 50.0% | |
| GGCAACTCGGACTGAATTAG+TGG | - | chr3_3:1864292-1864311 | None:intergenic | 50.0% | |
| TCATTTGAGCTGCGGCAACT+CGG | - | chr3_3:1864305-1864324 | None:intergenic | 50.0% | |
| GGAGAAATTGGAAGCGAGGT+CGG | - | chr3_3:1864337-1864356 | None:intergenic | 50.0% | |
| AGGTGGAGAAATTGGAAGCG+AGG | - | chr3_3:1864341-1864360 | None:intergenic | 50.0% | |
| ACGAGAGCAGGTGGAGAAAT+TGG | - | chr3_3:1864349-1864368 | None:intergenic | 50.0% | |
| TTTGACAAGACGAGAGCAGG+TGG | - | chr3_3:1864358-1864377 | None:intergenic | 50.0% | |
| TCAAAGGAAGCTGCATCAGC+TGG | + | chr3_3:1864470-1864489 | Msa0437850:intron | 50.0% | |
| GAGAGCTCCATACAGAGGTT+AGG | + | chr3_3:1865845-1865864 | Msa0437850:intron | 50.0% | |
| GTCAATAGGCTCCGCTATAG+CGG | - | chr3_3:1866034-1866053 | None:intergenic | 50.0% | |
| ATGTGGATGTTCCTGGTGGA+AGG | + | chr3_3:1866177-1866196 | Msa0437850:CDS | 50.0% | |
| TGTGGATGTTCCTGGTGGAA+GGG | + | chr3_3:1866178-1866197 | Msa0437850:CDS | 50.0% | |
| AGACAGTCCTATTGGGCGTT+TGG | + | chr3_3:1866621-1866640 | Msa0437850:CDS | 50.0% | |
| GACAGTCCTATTGGGCGTTT+GGG | + | chr3_3:1866622-1866641 | Msa0437850:CDS | 50.0% | |
| !! | CCGAGAAGAGAAGCATTGCT+AGG | - | chr3_3:1866966-1866985 | None:intergenic | 50.0% |
| GCAGCAGCTATGACCTGATA+AGG | - | chr3_3:1867264-1867283 | None:intergenic | 50.0% | |
| ACTGTTGTTGGTCGCTTACC+AGG | + | chr3_3:1867351-1867370 | Msa0437850:CDS | 50.0% | |
| GTATGAGCTGAGGCCTCATA+TGG | + | chr3_3:1867534-1867553 | Msa0437850:intron | 50.0% | |
| GCCTCATATGGCTTACCTCA+GGG | + | chr3_3:1867546-1867565 | Msa0437850:intron | 50.0% | |
| TCCCTGAGGTAAGCCATATG+AGG | - | chr3_3:1867550-1867569 | None:intergenic | 50.0% | |
| TATGGCTTACCTCAGGGAGA+TGG | + | chr3_3:1867552-1867571 | Msa0437850:intron | 50.0% | |
| ATGGCTTACCTCAGGGAGAT+GGG | + | chr3_3:1867553-1867572 | Msa0437850:intron | 50.0% | |
| ! | GGGGAAGGAGTGTGTATTAC+AGG | + | chr3_3:1867573-1867592 | Msa0437850:intron | 50.0% |
| ! | CAGGCCTTTTCCCACTAAGT+GGG | + | chr3_3:1867610-1867629 | Msa0437850:intron | 50.0% |
| ! | AGGCCTTTTCCCACTAAGTG+GGG | + | chr3_3:1867611-1867630 | Msa0437850:intron | 50.0% |
| ACACCCCACTTAGTGGGAAA+AGG | - | chr3_3:1867617-1867636 | None:intergenic | 50.0% | |
| GTGGGGTGTATTACAGGAGA+AGG | + | chr3_3:1867628-1867647 | Msa0437850:intron | 50.0% | |
| GGTGATTTCATTCTCCTCGC+TGG | + | chr3_3:1867694-1867713 | Msa0437850:intron | 50.0% | |
| GATTGAAAAGCCGGCGACGA+CGG | - | chr3_3:1864265-1864284 | None:intergenic | 55.0% | |
| !!! | CGTCGCCGGCTTTTCAATCA+TGG | + | chr3_3:1864266-1864285 | Msa0437850:CDS | 55.0% |
| ATTGGAAGCGAGGTCGGTGA+TGG | - | chr3_3:1864331-1864350 | None:intergenic | 55.0% | |
| AATGAGAAATGGAGCGGGGG+TGG | + | chr3_3:1865446-1865465 | Msa0437850:intron | 55.0% | |
| ATGAGAAATGGAGCGGGGGT+GGG | + | chr3_3:1865447-1865466 | Msa0437850:intron | 55.0% | |
| CTAAGGCCCAAACGCCCAAT+AGG | - | chr3_3:1866631-1866650 | None:intergenic | 55.0% | |
| GCGTTTCCAACATGGAGCAC+AGG | + | chr3_3:1866693-1866712 | Msa0437850:CDS | 55.0% | |
| CTGCGGGCACCAATAGTATC+TGG | - | chr3_3:1866850-1866869 | None:intergenic | 55.0% | |
| GTCATAGCTGCTGCACAAGC+TGG | + | chr3_3:1867270-1867289 | Msa0437850:CDS | 55.0% | |
| GATCCTTGGGGGACTGTTGT+TGG | + | chr3_3:1867339-1867358 | Msa0437850:CDS | 55.0% | |
| GGCCTCATATGGCTTACCTC+AGG | + | chr3_3:1867545-1867564 | Msa0437850:intron | 55.0% | |
| TGGCTTACCTCAGGGAGATG+GGG | + | chr3_3:1867554-1867573 | Msa0437850:intron | 55.0% | |
| TTACCTCAGGGAGATGGGGA+AGG | + | chr3_3:1867558-1867577 | Msa0437850:intron | 55.0% | |
| CCACTTAGTGGGAAAAGGCC+TGG | - | chr3_3:1867612-1867631 | None:intergenic | 55.0% | |
| ! | CCAGGCCTTTTCCCACTAAG+TGG | + | chr3_3:1867609-1867628 | Msa0437850:intron | 55.0% |
| AGGCTTGTAATCGGCGGCGA+CGG | - | chr3_3:1864236-1864255 | None:intergenic | 60.0% | |
| TGAGAAATGGAGCGGGGGTG+GGG | + | chr3_3:1865448-1865467 | Msa0437850:intron | 60.0% | |
| CGACCAACAACAGTCCCCCA+AGG | - | chr3_3:1867345-1867364 | None:intergenic | 60.0% | |
| ACTCCTTCCCCATCTCCCTG+AGG | - | chr3_3:1867564-1867583 | None:intergenic | 60.0% | |
| GAGAAATGGAGCGGGGGTGG+GGG | + | chr3_3:1865449-1865468 | Msa0437850:intron | 65.0% | |
| GCCTCTCTCTCCGTCGTCGC+CGG | + | chr3_3:1864252-1864271 | Msa0437850:CDS | 70.0% | |
| AATGGAGCGGGGGTGGGGGT+TGG | + | chr3_3:1865453-1865472 | Msa0437850:intron | 70.0% | |
| GCCGGCGACGACGGAGAGAG+AGG | - | chr3_3:1864256-1864275 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1864121 | 1868356 | 1864121 | ID=Msa0437850;Name=Msa0437850 |
| chr3_3 | mRNA | 1864121 | 1868356 | 1864121 | ID=Msa0437850-mRNA-1;Parent=Msa0437850;Name=Msa0437850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=53|1|1|1|0.87|1|9|244|320 |
| chr3_3 | exon | 1864121 | 1864377 | 1864121 | ID=Msa0437850-mRNA-1:exon:309;Parent=Msa0437850-mRNA-1 |
| chr3_3 | exon | 1864476 | 1864612 | 1864476 | ID=Msa0437850-mRNA-1:exon:310;Parent=Msa0437850-mRNA-1 |
| chr3_3 | exon | 1865095 | 1865223 | 1865095 | ID=Msa0437850-mRNA-1:exon:311;Parent=Msa0437850-mRNA-1 |
| chr3_3 | exon | 1866172 | 1866230 | 1866172 | ID=Msa0437850-mRNA-1:exon:312;Parent=Msa0437850-mRNA-1 |
| chr3_3 | exon | 1866602 | 1866714 | 1866602 | ID=Msa0437850-mRNA-1:exon:313;Parent=Msa0437850-mRNA-1 |
| chr3_3 | exon | 1866851 | 1866943 | 1866851 | ID=Msa0437850-mRNA-1:exon:314;Parent=Msa0437850-mRNA-1 |
| chr3_3 | exon | 1867270 | 1867372 | 1867270 | ID=Msa0437850-mRNA-1:exon:315;Parent=Msa0437850-mRNA-1 |
| chr3_3 | exon | 1867817 | 1867899 | 1867817 | ID=Msa0437850-mRNA-1:exon:316;Parent=Msa0437850-mRNA-1 |
| chr3_3 | exon | 1868071 | 1868356 | 1868071 | ID=Msa0437850-mRNA-1:exon:317;Parent=Msa0437850-mRNA-1 |
| chr3_3 | five_prime_UTR | 1864121 | 1864173 | 1864121 | ID=Msa0437850-mRNA-1:five_prime_utr;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1864174 | 1864377 | 1864174 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1864476 | 1864612 | 1864476 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1865095 | 1865223 | 1865095 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1866172 | 1866230 | 1866172 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1866602 | 1866714 | 1866602 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1866851 | 1866943 | 1866851 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1867270 | 1867372 | 1867270 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1867817 | 1867899 | 1867817 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | CDS | 1868071 | 1868112 | 1868071 | ID=Msa0437850-mRNA-1:cds;Parent=Msa0437850-mRNA-1 |
| chr3_3 | three_prime_UTR | 1868113 | 1868356 | 1868113 | ID=Msa0437850-mRNA-1:three_prime_utr;Parent=Msa0437850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
