AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177570 MtrunA17_Chr1g0200511 97.368 228 6 0 1 228 1 228 2.70e-166 457
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177570 AT4G09620.1 57.746 213 86 2 17 228 3 212 1.57e-80 240
Msa0177570 AT4G09620.3 57.746 213 86 2 17 228 3 212 1.57e-80 240
Msa0177570 AT4G09620.2 57.746 213 86 2 17 228 1 210 1.73e-80 240

Find 72 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTTGTTCATTCTCCTTAC+TGG 0.079985 1_4:+64663318 Msa0177570:CDS
GTCAAACAGGATTTATTATT+TGG 0.092352 1_4:+64664049 Msa0177570:three_prime_UTR
TCCATTTACTGCCTCAAATT+TGG 0.102598 1_4:-64663366 None:intergenic
ATTGCATGGTTCTCACATTT+TGG 0.171163 1_4:+64663740 Msa0177570:three_prime_UTR
CCTTCGAAATCCAAAAGTTT+TGG 0.174584 1_4:+64663556 Msa0177570:CDS
CCCAAATTTGAGGCAGTAAA+TGG 0.185063 1_4:+64663365 Msa0177570:CDS
AACAGCGAGTTTCTTGATTA+TGG 0.235924 1_4:+64660423 Msa0177570:five_prime_UTR
AAATTACATCCAAGAACTTC+TGG 0.252185 1_4:-64663455 None:intergenic
ATATTATAACCCAAAACTTT+TGG 0.261186 1_4:-64663566 None:intergenic
CCATTTACTGCCTCAAATTT+GGG 0.285378 1_4:-64663365 None:intergenic
TGTCTATTTCCTCGAACTTT+TGG 0.288223 1_4:-64660390 None:intergenic
CCTTGTTCATTCTCCTTACT+GGG 0.302250 1_4:+64663319 Msa0177570:CDS
TGGGTTCGATTCTAGTTAAT+TGG 0.316885 1_4:+64663629 Msa0177570:exon
TGGTGAGAGCGTAGATGATA+TGG 0.359980 1_4:+64660461 Msa0177570:exon
CAATACTCCACTGCTCCTTC+AGG 0.365711 1_4:-64663508 None:intergenic
GGGTTATAATATTGATTGTA+AGG 0.371787 1_4:+64663577 Msa0177570:CDS
GATATTTGGCGATGGAATAC+TGG 0.376586 1_4:-64663096 None:intergenic
CGACTTTGCAAGTATGCATA+TGG 0.379106 1_4:+64663805 Msa0177570:three_prime_UTR
AAGATACTTGGAAAAGCATT+TGG 0.395197 1_4:+64663296 Msa0177570:CDS
ATGGAACATTAGATTATCTA+AGG 0.403508 1_4:+64663384 Msa0177570:CDS
TTGCTAATGCAGGTATGGTT+AGG 0.405289 1_4:+64660798 Msa0177570:intron
ATCGTGCAGGCTGATCTTGC+TGG 0.416752 1_4:+64663065 Msa0177570:intron
ATTGTAATTTGTATCAACTT+AGG 0.421605 1_4:-64663982 None:intergenic
ACCTATTGATGATGTCAAAC+AGG 0.424650 1_4:+64664036 Msa0177570:three_prime_UTR
CAAGAACTGTGCTGCAGAAT+CGG 0.426988 1_4:-64660849 None:intergenic
TGATTGTAAGGGAGATTGTA+AGG 0.441638 1_4:+64663589 Msa0177570:CDS
GTATTGAAGGAAAATCTCTT+AGG 0.453881 1_4:+64663525 Msa0177570:CDS
TCCTGTTTGACATCATCAAT+AGG 0.454728 1_4:-64664037 None:intergenic
AGGCACAATGCACTAGATGC+TGG 0.458361 1_4:+64663609 Msa0177570:CDS
CCTTCACCTTCTCGTCGCTC+TGG 0.464197 1_4:+64660504 Msa0177570:CDS
TAACTTCGACGATGAAGAAA+AGG 0.469350 1_4:+64663271 Msa0177570:CDS
TATGAATTGATGAAGTTACT+TGG 0.469958 1_4:+64663842 Msa0177570:three_prime_UTR
AAGGAGCAGTGGAGTATTGA+AGG 0.472993 1_4:+64663512 Msa0177570:CDS
GAAGAAAAGGACAAGATACT+TGG 0.482017 1_4:+64663284 Msa0177570:CDS
AATGAATTATTTCTGCAACT+TGG 0.490911 1_4:-64663766 None:intergenic
AAATAAACCACTTTGAAAGC+TGG 0.497008 1_4:-64664138 None:intergenic
GTGATGAAGATCGGAGTATG+TGG 0.505034 1_4:+64663219 Msa0177570:CDS
TTGACATCATCAATAGGTTG+AGG 0.508507 1_4:-64664031 None:intergenic
AATATCAGAGACATGGAAGC+TGG 0.514777 1_4:-64664075 None:intergenic
TCTCAACCACCAAAAGTTCG+AGG 0.516670 1_4:+64660381 None:intergenic
TCACGATCTTCTCCCCAGTA+AGG 0.522126 1_4:-64663332 None:intergenic
TGACATCATCAATAGGTTGA+GGG 0.525521 1_4:-64664030 None:intergenic
CAGAATCGGTAGCGAGAAGA+GGG 0.534232 1_4:-64660835 None:intergenic
CAAATCATTCTACCAACCAT+TGG 0.536249 1_4:+64663156 Msa0177570:CDS
TGATGAAGTTACTTGGACAA+TGG 0.538545 1_4:+64663849 Msa0177570:three_prime_UTR
GGTTATAATATTGATTGTAA+GGG 0.549473 1_4:+64663578 Msa0177570:CDS
GAACAATGATGTTATGCTGC+AGG 0.558364 1_4:-64663681 None:intergenic
TGGCGATGGAATACTGGAAG+AGG 0.558839 1_4:-64663090 None:intergenic
TATGGTATCGTGCAAGTGAA+TGG 0.560960 1_4:+64660441 Msa0177570:five_prime_UTR
GGCACAATGCACTAGATGCT+GGG 0.562129 1_4:+64663610 Msa0177570:CDS
GAAGGAAGTTCCCAAATTTG+AGG 0.566069 1_4:+64663355 Msa0177570:CDS
GAACGAAGATACTCACAGTA+AGG 0.568225 1_4:+64663871 Msa0177570:three_prime_UTR
TAATCTCAAGTGATGAAGAT+CGG 0.572690 1_4:+64663210 Msa0177570:CDS
CCAGAGCGACGAGAAGGTGA+AGG 0.582685 1_4:-64660504 None:intergenic
CCCAGTAAGGAGAATGAACA+AGG 0.586733 1_4:-64663319 None:intergenic
CTTGTTCATTCTCCTTACTG+GGG 0.596220 1_4:+64663320 Msa0177570:CDS
TAAAGATCCTGAAGGAGCAG+TGG 0.596954 1_4:+64663501 Msa0177570:CDS
AGCACAGTTCTTGTGTTGCA+AGG 0.601341 1_4:+64660859 Msa0177570:CDS
ATGGTTGGTAGAATGATTTG+AGG 0.603312 1_4:-64663153 None:intergenic
TTTATTTAAGGTGGAGAGGG+CGG 0.603340 1_4:-64663710 None:intergenic
AACTAACCAGAGCGACGAGA+AGG 0.605348 1_4:-64660510 None:intergenic
GCAGAATCGGTAGCGAGAAG+AGG 0.606505 1_4:-64660836 None:intergenic
AGAACGCAATATCCAATGGT+TGG 0.612381 1_4:-64663168 None:intergenic
TCGTAGAACGCAATATCCAA+TGG 0.625607 1_4:-64663172 None:intergenic
TCATGATAATATCAGAGACA+TGG 0.627851 1_4:-64664082 None:intergenic
AGCTAATATAAAGATCCTGA+AGG 0.630758 1_4:+64663493 Msa0177570:CDS
CTGGGGAGAAGATCGTGAGA+AGG 0.634124 1_4:+64663337 Msa0177570:CDS
CAAGTCTTGCAAAAGCAAAG+TGG 0.634464 1_4:+64663129 Msa0177570:CDS
TGATGAAGATCGGAGTATGT+GGG 0.637812 1_4:+64663220 Msa0177570:CDS
AAATAAAAGACAGAATTGCA+TGG 0.639259 1_4:+64663726 Msa0177570:three_prime_UTR
AATTCATTCTCAAGTTAACG+CGG 0.707885 1_4:+64663781 Msa0177570:three_prime_UTR
AGAATCGGTAGCGAGAAGAG+GGG 0.733500 1_4:-64660834 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTAATATTTATTTTCTAT+GGG + chr1_4:64660892-64660911 Msa0177570:intron 10.0%
!! ACAAAAACAAAAAAACAAAT+TGG - chr1_4:64660646-64660665 None:intergenic 15.0%
!! CATAGAAAATAAATATTAAG+AGG - chr1_4:64660893-64660912 None:intergenic 15.0%
!!! CTCTTAATATTTATTTTCTA+TGG + chr1_4:64660891-64660910 Msa0177570:intron 15.0%
!!! TTTTAATTGTAAAGCTTTAA+AGG + chr1_4:64661860-64661879 Msa0177570:intron 15.0%
!!! TTTAATTGTAAAGCTTTAAA+GGG + chr1_4:64661861-64661880 Msa0177570:intron 15.0%
!!! TAGATAAAATTTTAGTTATC+TGG + chr1_4:64664112-64664131 Msa0177570:three_prime_UTR 15.0%
!!! AGATAAAATTTTAGTTATCT+GGG + chr1_4:64664113-64664132 Msa0177570:three_prime_UTR 15.0%
!!! AAAAGAAAGTCAATGTTTTT+GGG - chr1_4:64660559-64660578 None:intergenic 20.0%
!!! AAAAAGAAAGTCAATGTTTT+TGG - chr1_4:64660560-64660579 None:intergenic 20.0%
!! AAAAAAATCTCAACATAACA+TGG + chr1_4:64660620-64660639 Msa0177570:intron 20.0%
!! CAGCAATAAATTACATTTAT+TGG - chr1_4:64660744-64660763 None:intergenic 20.0%
!! ATTAATTGGTTATCTTTCTT+TGG + chr1_4:64662183-64662202 Msa0177570:intron 20.0%
!!! TTTTAGGACTTTGTATTTAA+AGG + chr1_4:64662548-64662567 Msa0177570:intron 20.0%
!! TTACCATACATATTGATATT+AGG + chr1_4:64662632-64662651 Msa0177570:intron 20.0%
!! ATGCATAAGTTTAATATTGA+TGG - chr1_4:64662932-64662951 None:intergenic 20.0%
!!! ATATTATAACCCAAAACTTT+TGG - chr1_4:64663569-64663588 None:intergenic 20.0%
!!! GGTTATAATATTGATTGTAA+GGG + chr1_4:64663578-64663597 Msa0177570:CDS 20.0%
!!! ATTGTAATTTGTATCAACTT+AGG - chr1_4:64663985-64664004 None:intergenic 20.0%
!!! TTTTTGGGAAGAAATTGAAA+AGG - chr1_4:64660544-64660563 None:intergenic 25.0%
!!! ATTGACTTTCTTTTTCAACA+TGG + chr1_4:64660565-64660584 Msa0177570:intron 25.0%
!!! TTGACTTTCTTTTTCAACAT+GGG + chr1_4:64660566-64660585 Msa0177570:intron 25.0%
!!! TTTTGGTTTTATCAGTATGT+AGG + chr1_4:64660704-64660723 Msa0177570:intron 25.0%
!!! TGTTATTTTTTTGCTAATGC+AGG + chr1_4:64660788-64660807 Msa0177570:intron 25.0%
!!! TATTTATTTTCTATGGGTTG+TGG + chr1_4:64660898-64660917 Msa0177570:intron 25.0%
! TCTCTACAATATGTTTAGAA+AGG + chr1_4:64660988-64661007 Msa0177570:intron 25.0%
!! ATATGTTTAGAAAGGTGTAA+TGG + chr1_4:64660996-64661015 Msa0177570:intron 25.0%
!! TATGTTTAGAAAGGTGTAAT+GGG + chr1_4:64660997-64661016 Msa0177570:intron 25.0%
! GTTACTGTATTATTGAATTG+TGG + chr1_4:64661036-64661055 Msa0177570:intron 25.0%
! TCTCCATATATTCATACTTT+GGG - chr1_4:64661074-64661093 None:intergenic 25.0%
! TTAATATGGATGTTTGTGTA+AGG - chr1_4:64661133-64661152 None:intergenic 25.0%
! TTACACAAACATCCATATTA+AGG + chr1_4:64661132-64661151 Msa0177570:intron 25.0%
! GGTTGAAAAAAACTTGAATT+TGG + chr1_4:64661937-64661956 Msa0177570:intron 25.0%
! TGAATTTGGTTATTCTTTGT+TGG + chr1_4:64661951-64661970 Msa0177570:intron 25.0%
! AGAATGCATAGTAGATTAAT+TGG + chr1_4:64662169-64662188 Msa0177570:intron 25.0%
! TAGTACAAAATGTTGTCAAA+TGG - chr1_4:64662309-64662328 None:intergenic 25.0%
!! TTTTGTACTAAATAGTGCAT+CGG + chr1_4:64662319-64662338 Msa0177570:intron 25.0%
! GTATTTAAAGGATATCTTCA+TGG + chr1_4:64662560-64662579 Msa0177570:intron 25.0%
! ATCAATATGTATGGTAAACA+TGG - chr1_4:64662629-64662648 None:intergenic 25.0%
! TAGCCTAATATCAATATGTA+TGG - chr1_4:64662638-64662657 None:intergenic 25.0%
! ATGATATGTAACCTATATCT+AGG - chr1_4:64662784-64662803 None:intergenic 25.0%
! CAAGATGTAAAAAAATTCAC+TGG + chr1_4:64662991-64663010 Msa0177570:intron 25.0%
! ATGTAAAAAAATTCACTGGT+AGG + chr1_4:64662995-64663014 Msa0177570:intron 25.0%
! ATGGAACATTAGATTATCTA+AGG + chr1_4:64663384-64663403 Msa0177570:CDS 25.0%
!!! TGGAAATTTTTTAAGCAACT+TGG - chr1_4:64663438-64663457 None:intergenic 25.0%
! AAAAAATTTCCAGAAGTTCT+TGG + chr1_4:64663446-64663465 Msa0177570:CDS 25.0%
!! GGGTTATAATATTGATTGTA+AGG + chr1_4:64663577-64663596 Msa0177570:CDS 25.0%
!!! ATTCTGTCTTTTATTTAAGG+TGG - chr1_4:64663722-64663741 None:intergenic 25.0%
!!! GCAATTCTGTCTTTTATTTA+AGG - chr1_4:64663725-64663744 None:intergenic 25.0%
! AAATAAAAGACAGAATTGCA+TGG + chr1_4:64663726-64663745 Msa0177570:three_prime_UTR 25.0%
!!! AATGAATTATTTCTGCAACT+TGG - chr1_4:64663769-64663788 None:intergenic 25.0%
! TATGAATTGATGAAGTTACT+TGG + chr1_4:64663842-64663861 Msa0177570:three_prime_UTR 25.0%
! GTCAAACAGGATTTATTATT+TGG + chr1_4:64664049-64664068 Msa0177570:three_prime_UTR 25.0%
!!! TTTTTTTGCTAATGCAGGTA+TGG + chr1_4:64660793-64660812 Msa0177570:intron 30.0%
ATTTGTATGTGTGTAGGAAA+TGG + chr1_4:64660924-64660943 Msa0177570:intron 30.0%
AATGGGACAAAATGAATTGA+AGG + chr1_4:64661014-64661033 Msa0177570:intron 30.0%
ACTCCCAAAGTATGAATATA+TGG + chr1_4:64661068-64661087 Msa0177570:intron 30.0%
CTCTCCATATATTCATACTT+TGG - chr1_4:64661075-64661094 None:intergenic 30.0%
CAAAGTATGAATATATGGAG+AGG + chr1_4:64661073-64661092 Msa0177570:intron 30.0%
AGGATTGTGAATCCTTAATA+TGG - chr1_4:64661147-64661166 None:intergenic 30.0%
!! ATTCTTCTAGAATGCTTTGT+TGG + chr1_4:64661270-64661289 Msa0177570:intron 30.0%
!! TTAAAGAGGAAGGTATTGTA+AGG - chr1_4:64661331-64661350 None:intergenic 30.0%
TGAAGTTAGGATAATGATGT+AGG + chr1_4:64661380-64661399 Msa0177570:intron 30.0%
TTCCAATTATTGCCAAGATT+GGG - chr1_4:64661660-64661679 None:intergenic 30.0%
TTTCCAATTATTGCCAAGAT+TGG - chr1_4:64661661-64661680 None:intergenic 30.0%
ATCTTGGCAATAATTGGAAA+TGG + chr1_4:64661661-64661680 Msa0177570:intron 30.0%
! ACCTTTAATTTCACAAGACA+GGG - chr1_4:64661800-64661819 None:intergenic 30.0%
AGTAACGATATACTAGTTGA+TGG + chr1_4:64661999-64662018 Msa0177570:intron 30.0%
! CAATTGTTGATGAAAAGCAT+TGG - chr1_4:64662025-64662044 None:intergenic 30.0%
TACAAAATGTTGTCAAATGG+TGG - chr1_4:64662306-64662325 None:intergenic 30.0%
TTTGTACTAAATAGTGCATC+GGG + chr1_4:64662320-64662339 Msa0177570:intron 30.0%
CAAGCATTCAAAATTAACCA+TGG + chr1_4:64662451-64662470 Msa0177570:intron 30.0%
! ATATTTAACTTCCCATAGAC+TGG + chr1_4:64662506-64662525 Msa0177570:intron 30.0%
GACTTTAAATTCCAGTCTAT+GGG - chr1_4:64662520-64662539 None:intergenic 30.0%
! TTAAAGTCCCAATGTCTTTT+AGG + chr1_4:64662532-64662551 Msa0177570:intron 30.0%
ACAAAGTCCTAAAAGACATT+GGG - chr1_4:64662542-64662561 None:intergenic 30.0%
TACAAAGTCCTAAAAGACAT+TGG - chr1_4:64662543-64662562 None:intergenic 30.0%
! TCATGGTTTCATACTTTTGT+TGG + chr1_4:64662577-64662596 Msa0177570:intron 30.0%
! CTAAAACTGGATTCTTTTCA+AGG - chr1_4:64662675-64662694 None:intergenic 30.0%
!!! AAAGAATCCAGTTTTAGTTC+TGG + chr1_4:64662678-64662697 Msa0177570:intron 30.0%
! AAGATTTTTGAATTCTGCTG+TGG + chr1_4:64662838-64662857 Msa0177570:intron 30.0%
AAAAATCTGATATTTGGCGA+TGG - chr1_4:64663107-64663126 None:intergenic 30.0%
CTTGGCAAAAATCTGATATT+TGG - chr1_4:64663113-64663132 None:intergenic 30.0%
TAATCTCAAGTGATGAAGAT+CGG + chr1_4:64663210-64663229 Msa0177570:CDS 30.0%
!! AAGATACTTGGAAAAGCATT+TGG + chr1_4:64663296-64663315 Msa0177570:CDS 30.0%
AAATTACATCCAAGAACTTC+TGG - chr1_4:64663458-64663477 None:intergenic 30.0%
AGCTAATATAAAGATCCTGA+AGG + chr1_4:64663493-64663512 Msa0177570:CDS 30.0%
GTATTGAAGGAAAATCTCTT+AGG + chr1_4:64663525-64663544 Msa0177570:CDS 30.0%
! CTTCGAAATCCAAAAGTTTT+GGG + chr1_4:64663557-64663576 Msa0177570:CDS 30.0%
!! TCTTTTATTTAAGGTGGAGA+GGG - chr1_4:64663716-64663735 None:intergenic 30.0%
AATTCATTCTCAAGTTAACG+CGG + chr1_4:64663781-64663800 Msa0177570:three_prime_UTR 30.0%
TCATGATAATATCAGAGACA+TGG - chr1_4:64664085-64664104 None:intergenic 30.0%
AACAGCGAGTTTCTTGATTA+TGG + chr1_4:64660423-64660442 Msa0177570:five_prime_UTR 35.0%
!! TTAGAGGGTTGACTTTGTTT+TGG + chr1_4:64660687-64660706 Msa0177570:intron 35.0%
GTATGTAGGTTCTTCATGTT+TGG + chr1_4:64660718-64660737 Msa0177570:intron 35.0%
!! TTATTTTCTATGGGTTGTGG+TGG + chr1_4:64660901-64660920 Msa0177570:intron 35.0%
!!! AGGAGAGAGCTTTTAGAATA+AGG + chr1_4:64661093-64661112 Msa0177570:intron 35.0%
!!! GGAGAGAGCTTTTAGAATAA+GGG + chr1_4:64661094-64661113 Msa0177570:intron 35.0%
!!! AGCTTTTAGAATAAGGGAAG+AGG + chr1_4:64661100-64661119 Msa0177570:intron 35.0%
!! TGACTAGTCTTAATAGAGTG+AGG - chr1_4:64661167-64661186 None:intergenic 35.0%
! ATTAAGACTAGTCATCTCAC+AGG + chr1_4:64661173-64661192 Msa0177570:intron 35.0%
! AGCATTCTAGAAGAATCGAT+GGG - chr1_4:64661266-64661285 None:intergenic 35.0%
! AAGCATTCTAGAAGAATCGA+TGG - chr1_4:64661267-64661286 None:intergenic 35.0%
!! AAGGTCGATTTTAAAGAGGA+AGG - chr1_4:64661341-64661360 None:intergenic 35.0%
TTATCCTAACTTCAACCTTG+AGG - chr1_4:64661374-64661393 None:intergenic 35.0%
TCTCTTAAACAGTTTCAGCT+GGG + chr1_4:64661573-64661592 Msa0177570:intron 35.0%
AGCTGGGATATGTAAAAAAC+TGG + chr1_4:64661589-64661608 Msa0177570:intron 35.0%
GCTGGGATATGTAAAAAACT+GGG + chr1_4:64661590-64661609 Msa0177570:intron 35.0%
AATTATTGCCAAGATTGGGA+TGG - chr1_4:64661656-64661675 None:intergenic 35.0%
ATCCCAATCTTGGCAATAAT+TGG + chr1_4:64661655-64661674 Msa0177570:intron 35.0%
TCCCTGTCTTGTGAAATTAA+AGG + chr1_4:64661796-64661815 Msa0177570:intron 35.0%
! GACCTTTAATTTCACAAGAC+AGG - chr1_4:64661801-64661820 None:intergenic 35.0%
TACTACATCCATAGCCAAAA+TGG - chr1_4:64662064-64662083 None:intergenic 35.0%
AATCCAATAAGCTGGTTGAA+TGG + chr1_4:64662109-64662128 Msa0177570:intron 35.0%
!! GGTTATCTTTCTTTGGAGTT+AGG + chr1_4:64662190-64662209 Msa0177570:intron 35.0%
TTGTACTAAATAGTGCATCG+GGG + chr1_4:64662321-64662340 Msa0177570:intron 35.0%
!! CTCCATTCTGATTCGTTTTA+CGG + chr1_4:64662354-64662373 Msa0177570:intron 35.0%
! GTTTTACGGTGACTATCATA+TGG + chr1_4:64662368-64662387 Msa0177570:intron 35.0%
GGACTTTAAATTCCAGTCTA+TGG - chr1_4:64662521-64662540 None:intergenic 35.0%
TCTTCAGCATACCTAGATAT+AGG + chr1_4:64662770-64662789 Msa0177570:intron 35.0%
ACTTATGCATACAGATCCAA+AGG + chr1_4:64662942-64662961 Msa0177570:intron 35.0%
AATGTTCCAATTTCCAACTC+TGG - chr1_4:64662968-64662987 None:intergenic 35.0%
!! CGTACACAATTTTTAGACTC+TGG - chr1_4:64663045-64663064 None:intergenic 35.0%
!! ATGGTTGGTAGAATGATTTG+AGG - chr1_4:64663156-64663175 None:intergenic 35.0%
CAAATCATTCTACCAACCAT+TGG + chr1_4:64663156-64663175 Msa0177570:CDS 35.0%
TAACTTCGACGATGAAGAAA+AGG + chr1_4:64663271-64663290 Msa0177570:CDS 35.0%
GAAGAAAAGGACAAGATACT+TGG + chr1_4:64663284-64663303 Msa0177570:CDS 35.0%
CCATTTACTGCCTCAAATTT+GGG - chr1_4:64663368-64663387 None:intergenic 35.0%
TCCATTTACTGCCTCAAATT+TGG - chr1_4:64663369-64663388 None:intergenic 35.0%
! CCAAAACTTTTGGATTTCGA+AGG - chr1_4:64663559-64663578 None:intergenic 35.0%
! CCTTCGAAATCCAAAAGTTT+TGG + chr1_4:64663556-64663575 Msa0177570:CDS 35.0%
TGATTGTAAGGGAGATTGTA+AGG + chr1_4:64663589-64663608 Msa0177570:CDS 35.0%
! TGGGTTCGATTCTAGTTAAT+TGG + chr1_4:64663629-64663648 Msa0177570:exon 35.0%
!! GTCTTTTATTTAAGGTGGAG+AGG - chr1_4:64663717-64663736 None:intergenic 35.0%
! ATTGCATGGTTCTCACATTT+TGG + chr1_4:64663740-64663759 Msa0177570:three_prime_UTR 35.0%
TGATGAAGTTACTTGGACAA+TGG + chr1_4:64663849-64663868 Msa0177570:three_prime_UTR 35.0%
! TGACATCATCAATAGGTTGA+GGG - chr1_4:64664033-64664052 None:intergenic 35.0%
TTGACATCATCAATAGGTTG+AGG - chr1_4:64664034-64664053 None:intergenic 35.0%
!! ACCTATTGATGATGTCAAAC+AGG + chr1_4:64664036-64664055 Msa0177570:three_prime_UTR 35.0%
TCCTGTTTGACATCATCAAT+AGG - chr1_4:64664040-64664059 None:intergenic 35.0%
!!! CAAGAAACTCGCTGTTTTTG+TGG - chr1_4:64660419-64660438 None:intergenic 40.0%
TATGGTATCGTGCAAGTGAA+TGG + chr1_4:64660441-64660460 Msa0177570:five_prime_UTR 40.0%
! TTTGTCTGAGACTCTCTTAG+AGG + chr1_4:64660671-64660690 Msa0177570:intron 40.0%
! TTGTCTGAGACTCTCTTAGA+GGG + chr1_4:64660672-64660691 Msa0177570:intron 40.0%
TTGCTAATGCAGGTATGGTT+AGG + chr1_4:64660798-64660817 Msa0177570:intron 40.0%
!! TGGTGGATTTGTATGTGTGT+AGG + chr1_4:64660918-64660937 Msa0177570:intron 40.0%
! GCATTCTAGAAGAATCGATG+GGG - chr1_4:64661265-64661284 None:intergenic 40.0%
TCTCTTTCCTTTGTCATAGC+TGG + chr1_4:64661299-64661318 Msa0177570:intron 40.0%
!! GGACAAGGTCGATTTTAAAG+AGG - chr1_4:64661345-64661364 None:intergenic 40.0%
TTGTCCTCAAGGTTGAAGTT+AGG + chr1_4:64661367-64661386 Msa0177570:intron 40.0%
ATACTAGCATAGTCCTCACA+GGG + chr1_4:64661403-64661422 Msa0177570:intron 40.0%
ACAGTAAGCTCTTGTTCAGT+GGG - chr1_4:64661452-64661471 None:intergenic 40.0%
ACTGTCCTTGAATGATCTCA+CGG + chr1_4:64661467-64661486 Msa0177570:intron 40.0%
CGTAATAGGACCTAATTCAC+TGG + chr1_4:64661513-64661532 Msa0177570:intron 40.0%
CCTATGACAACCAGTGAATT+AGG - chr1_4:64661526-64661545 None:intergenic 40.0%
! CCTAATTCACTGGTTGTCAT+AGG + chr1_4:64661523-64661542 Msa0177570:intron 40.0%
GTCTCTTAAACAGTTTCAGC+TGG + chr1_4:64661572-64661591 Msa0177570:intron 40.0%
GTATTCTACCATCCCAATCT+TGG + chr1_4:64661645-64661664 Msa0177570:intron 40.0%
! CAGGGATGCTTTATTGAATC+AGG - chr1_4:64661782-64661801 None:intergenic 40.0%
! AAGGGCTTCTCTTTTTCTGT+TGG + chr1_4:64661879-64661898 Msa0177570:intron 40.0%
TTGGCTCACTAAGTGAAAAC+TGG + chr1_4:64661970-64661989 Msa0177570:intron 40.0%
CTCACTAAGTGAAAACTGGA+GGG + chr1_4:64661974-64661993 Msa0177570:intron 40.0%
!!! AGAAGTTGCCATTTTGGCTA+TGG + chr1_4:64662053-64662072 Msa0177570:intron 40.0%
TTGCTCACAATCCAATAAGC+TGG + chr1_4:64662101-64662120 Msa0177570:intron 40.0%
CAACCATTCAACCAGCTTAT+TGG - chr1_4:64662115-64662134 None:intergenic 40.0%
CAATAAGCTGGTTGAATGGT+TGG + chr1_4:64662113-64662132 Msa0177570:intron 40.0%
ATCTGTGATTGACAATGCTG+AGG - chr1_4:64662217-64662236 None:intergenic 40.0%
CAGTGCTATAACATCGCTAT+AGG + chr1_4:64662275-64662294 Msa0177570:intron 40.0%
CACCGTAAAACGAATCAGAA+TGG - chr1_4:64662359-64662378 None:intergenic 40.0%
GTGACTATCATATGGAGAGT+GGG + chr1_4:64662376-64662395 Msa0177570:intron 40.0%
GTTTCAATGCAAAGTCTCCA+TGG - chr1_4:64662471-64662490 None:intergenic 40.0%
!!! GAATCCAGTTTTAGTTCTGG+AGG + chr1_4:64662681-64662700 Msa0177570:intron 40.0%
TCAACCTCCAGAACTAAAAC+TGG - chr1_4:64662688-64662707 None:intergenic 40.0%
AAATTCACTGGTAGGACTGT+AGG + chr1_4:64663003-64663022 Msa0177570:intron 40.0%
GGACTGTAGGAGGATAATAA+TGG + chr1_4:64663016-64663035 Msa0177570:intron 40.0%
AAAATTGTGTACGATCGTGC+AGG + chr1_4:64663052-64663071 Msa0177570:intron 40.0%
GATATTTGGCGATGGAATAC+TGG - chr1_4:64663099-64663118 None:intergenic 40.0%
!! CACTTTGCTTTTGCAAGACT+TGG - chr1_4:64663131-64663150 None:intergenic 40.0%
CAAGTCTTGCAAAAGCAAAG+TGG + chr1_4:64663129-64663148 Msa0177570:CDS 40.0%
AGAACGCAATATCCAATGGT+TGG - chr1_4:64663171-64663190 None:intergenic 40.0%
TCGTAGAACGCAATATCCAA+TGG - chr1_4:64663175-64663194 None:intergenic 40.0%
TGATGAAGATCGGAGTATGT+GGG + chr1_4:64663220-64663239 Msa0177570:CDS 40.0%
CCTTGTTCATTCTCCTTACT+GGG + chr1_4:64663319-64663338 Msa0177570:CDS 40.0%
CTTGTTCATTCTCCTTACTG+GGG + chr1_4:64663320-64663339 Msa0177570:CDS 40.0%
GAAGGAAGTTCCCAAATTTG+AGG + chr1_4:64663355-64663374 Msa0177570:CDS 40.0%
! CCCAAATTTGAGGCAGTAAA+TGG + chr1_4:64663365-64663384 Msa0177570:CDS 40.0%
! CTTTTGGATTTCGAAGGAGA+AGG - chr1_4:64663553-64663572 None:intergenic 40.0%
GAACAATGATGTTATGCTGC+AGG - chr1_4:64663684-64663703 None:intergenic 40.0%
! TTTATTTAAGGTGGAGAGGG+CGG - chr1_4:64663713-64663732 None:intergenic 40.0%
CGACTTTGCAAGTATGCATA+TGG + chr1_4:64663805-64663824 Msa0177570:three_prime_UTR 40.0%
GAACGAAGATACTCACAGTA+AGG + chr1_4:64663871-64663890 Msa0177570:three_prime_UTR 40.0%
AATATCAGAGACATGGAAGC+TGG - chr1_4:64664078-64664097 None:intergenic 40.0%
! TGGTGAGAGCGTAGATGATA+TGG + chr1_4:64660461-64660480 Msa0177570:exon 45.0%
CAAGAACTGTGCTGCAGAAT+CGG - chr1_4:64660852-64660871 None:intergenic 45.0%
AGCACAGTTCTTGTGTTGCA+AGG + chr1_4:64660859-64660878 Msa0177570:CDS 45.0%
GTCATCTCACAGGATCTTTC+AGG + chr1_4:64661183-64661202 Msa0177570:intron 45.0%
! TTCTAGAAGAATCGATGGGG+AGG - chr1_4:64661262-64661281 None:intergenic 45.0%
GAAGCTTCCAGCTATGACAA+AGG - chr1_4:64661309-64661328 None:intergenic 45.0%
ACTTCAACCTTGAGGACAAC+TGG - chr1_4:64661366-64661385 None:intergenic 45.0%
GATACTAGCATAGTCCTCAC+AGG + chr1_4:64661402-64661421 Msa0177570:intron 45.0%
TTGTTCAGTGGGAACACTTG+GGG - chr1_4:64661441-64661460 None:intergenic 45.0%
CTTGTTCAGTGGGAACACTT+GGG - chr1_4:64661442-64661461 None:intergenic 45.0%
TCTTGTTCAGTGGGAACACT+TGG - chr1_4:64661443-64661462 None:intergenic 45.0%
GACAGTAAGCTCTTGTTCAG+TGG - chr1_4:64661453-64661472 None:intergenic 45.0%
CTGTCCTTGAATGATCTCAC+GGG + chr1_4:64661468-64661487 Msa0177570:intron 45.0%
! ACTGCTACTGGTTGCGTAAT+AGG + chr1_4:64661499-64661518 Msa0177570:intron 45.0%
! TCACTGGTTGTCATAGGAAG+AGG + chr1_4:64661529-64661548 Msa0177570:intron 45.0%
TTCTTTCCTCTGCAAGATGC+TGG + chr1_4:64661617-64661636 Msa0177570:intron 45.0%
!! ACAACTGCAGGTTGGTGATA+AGG - chr1_4:64661704-64661723 None:intergenic 45.0%
AAGACAGGATGTACAACTGC+AGG - chr1_4:64661716-64661735 None:intergenic 45.0%
TTTGAGCCTTCATGACCTGT+TGG + chr1_4:64661734-64661753 Msa0177570:intron 45.0%
TTGAGCCTTCATGACCTGTT+GGG + chr1_4:64661735-64661754 Msa0177570:intron 45.0%
! GGCTTCTCTTTTTCTGTTGG+CGG + chr1_4:64661882-64661901 Msa0177570:intron 45.0%
AGTGCAACTAGTAATGCTGC+AGG + chr1_4:64661909-64661928 Msa0177570:intron 45.0%
GCTCACTAAGTGAAAACTGG+AGG + chr1_4:64661973-64661992 Msa0177570:intron 45.0%
!! GAGTGCAGAAGTTGCCATTT+TGG + chr1_4:64662047-64662066 Msa0177570:intron 45.0%
GGTTGGCGTTATAGTGTTCT+TGG + chr1_4:64662130-64662149 Msa0177570:intron 45.0%
GGTGACTATCATATGGAGAG+TGG + chr1_4:64662375-64662394 Msa0177570:intron 45.0%
! TTTTTACAGCTCCTCCTACG+AGG + chr1_4:64662419-64662438 Msa0177570:intron 45.0%
TGTTGAAAATGCCTCGTAGG+AGG - chr1_4:64662433-64662452 None:intergenic 45.0%
! GCTTGTTGAAAATGCCTCGT+AGG - chr1_4:64662436-64662455 None:intergenic 45.0%
! CAATTTCCAACTCTGGCCTT+TGG - chr1_4:64662961-64662980 None:intergenic 45.0%
CAAAGGCCAGAGTTGGAAAT+TGG + chr1_4:64662959-64662978 Msa0177570:intron 45.0%
GTGATGAAGATCGGAGTATG+TGG + chr1_4:64663219-64663238 Msa0177570:CDS 45.0%
! GCCTTGTTCATTCTCCTTAC+TGG + chr1_4:64663318-64663337 Msa0177570:CDS 45.0%
CCCAGTAAGGAGAATGAACA+AGG - chr1_4:64663322-64663341 None:intergenic 45.0%
TAAAGATCCTGAAGGAGCAG+TGG + chr1_4:64663501-64663520 Msa0177570:CDS 45.0%
!! AAGGAGCAGTGGAGTATTGA+AGG + chr1_4:64663512-64663531 Msa0177570:CDS 45.0%
AACTAACCAGAGCGACGAGA+AGG - chr1_4:64660513-64660532 None:intergenic 50.0%
AGAATCGGTAGCGAGAAGAG+GGG - chr1_4:64660837-64660856 None:intergenic 50.0%
CAGAATCGGTAGCGAGAAGA+GGG - chr1_4:64660838-64660857 None:intergenic 50.0%
AGGAAGTAGGGAGAGGAATG+CGG - chr1_4:64661229-64661248 None:intergenic 50.0%
AGAATCCAGGAAGTAGGGAG+AGG - chr1_4:64661236-64661255 None:intergenic 50.0%
CTCCCTACTTCCTGGATTCT+CGG + chr1_4:64661236-64661255 Msa0177570:intron 50.0%
ACCTTGTCCAGTTGTCCTCA+AGG + chr1_4:64661356-64661375 Msa0177570:intron 50.0%
ACCTTGAGGACAACTGGACA+AGG - chr1_4:64661360-64661379 None:intergenic 50.0%
GGAGACTAAAGTTCCCTGTG+AGG - chr1_4:64661419-64661438 None:intergenic 50.0%
TGTTCAGTGGGAACACTTGG+GGG - chr1_4:64661440-64661459 None:intergenic 50.0%
CAGACCCGTGAGATCATTCA+AGG - chr1_4:64661475-64661494 None:intergenic 50.0%
CGGGTCTGTAAAACTGCTAC+TGG + chr1_4:64661487-64661506 Msa0177570:intron 50.0%
CAGGATGTACAACTGCAGGT+TGG - chr1_4:64661712-64661731 None:intergenic 50.0%
GGTCATGAAGGCTCAAAGAC+AGG - chr1_4:64661731-64661750 None:intergenic 50.0%
CTAGTAATGCTGCAGGCGAA+TGG + chr1_4:64661916-64661935 Msa0177570:intron 50.0%
ACAGATCCAAAGGCCAGAGT+TGG + chr1_4:64662952-64662971 Msa0177570:intron 50.0%
TTCACTGGTAGGACTGTAGG+AGG + chr1_4:64663006-64663025 Msa0177570:intron 50.0%
TGGCGATGGAATACTGGAAG+AGG - chr1_4:64663093-64663112 None:intergenic 50.0%
TCACGATCTTCTCCCCAGTA+AGG - chr1_4:64663335-64663354 None:intergenic 50.0%
CAATACTCCACTGCTCCTTC+AGG - chr1_4:64663511-64663530 None:intergenic 50.0%
AGGCACAATGCACTAGATGC+TGG + chr1_4:64663609-64663628 Msa0177570:CDS 50.0%
GGCACAATGCACTAGATGCT+GGG + chr1_4:64663610-64663629 Msa0177570:CDS 50.0%
GCAGAATCGGTAGCGAGAAG+AGG - chr1_4:64660839-64660858 None:intergenic 55.0%
TAGGGAGAGGAATGCGGCAA+CGG - chr1_4:64661223-64661242 None:intergenic 55.0%
GCATTCCTCTCCCTACTTCC+TGG + chr1_4:64661228-64661247 Msa0177570:intron 55.0%
GGCCGAGAATCCAGGAAGTA+GGG - chr1_4:64661241-64661260 None:intergenic 55.0%
AGGCCGAGAATCCAGGAAGT+AGG - chr1_4:64661242-64661261 None:intergenic 55.0%
CAAGCTCCAGCATCTTGCAG+AGG - chr1_4:64661626-64661645 None:intergenic 55.0%
CCTTCATGACCTGTTGGGTG+CGG + chr1_4:64661740-64661759 Msa0177570:intron 55.0%
CTTCATGACCTGTTGGGTGC+GGG + chr1_4:64661741-64661760 Msa0177570:intron 55.0%
TAACTTGACCCGCACCCAAC+AGG - chr1_4:64661752-64661771 None:intergenic 55.0%
ATCGTGCAGGCTGATCTTGC+TGG + chr1_4:64663065-64663084 Msa0177570:intron 55.0%
CTGGGGAGAAGATCGTGAGA+AGG + chr1_4:64663337-64663356 Msa0177570:CDS 55.0%
CCAGAGCGACGAGAAGGTGA+AGG - chr1_4:64660507-64660526 None:intergenic 60.0%
CCTTCACCTTCTCGTCGCTC+TGG + chr1_4:64660504-64660523 Msa0177570:CDS 60.0%
CCGCACCCAACAGGTCATGA+AGG - chr1_4:64661743-64661762 None:intergenic 60.0%
GATGGGGAGGCCGAGAATCC+AGG - chr1_4:64661249-64661268 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 64660391 64664146 64660391 ID=Msa0177570;Name=Msa0177570
chr1_4 mRNA 64660391 64664146 64660391 ID=Msa0177570-mRNA-1;Parent=Msa0177570;Name=Msa0177570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|3|503|228
chr1_4 exon 64660391 64660525 64660391 ID=Msa0177570-mRNA-1:exon:20979;Parent=Msa0177570-mRNA-1
chr1_4 exon 64660810 64660880 64660810 ID=Msa0177570-mRNA-1:exon:20980;Parent=Msa0177570-mRNA-1
chr1_4 exon 64663074 64664146 64663074 ID=Msa0177570-mRNA-1:exon:20981;Parent=Msa0177570-mRNA-1
chr1_4 five_prime_UTR 64660391 64660479 64660391 ID=Msa0177570-mRNA-1:five_prime_utr;Parent=Msa0177570-mRNA-1
chr1_4 CDS 64660480 64660525 64660480 ID=Msa0177570-mRNA-1:cds;Parent=Msa0177570-mRNA-1
chr1_4 CDS 64660810 64660880 64660810 ID=Msa0177570-mRNA-1:cds;Parent=Msa0177570-mRNA-1
chr1_4 CDS 64663074 64663643 64663074 ID=Msa0177570-mRNA-1:cds;Parent=Msa0177570-mRNA-1
chr1_4 three_prime_UTR 64663644 64664146 64663644 ID=Msa0177570-mRNA-1:three_prime_utr;Parent=Msa0177570-mRNA-1
Gene Sequence

>Msa0177570

ATGGAGTGTCTCAACTTCGCATCGCCTTCACCTTCTCGTCGCTCTGGTATGGTTAGGAAACAGTTGAATTCCCCTCTTCTCGCTACCGATTCTGCAGCACAGTTCTTGTGTTGCAAGGCTGATCTTGCTGGTGCCTCTTCCAGTATTCCATCGCCAAATATCAGATTTTTGCCAAGTCTTGCAAAAGCAAAGTGGACCTCAAATCATTCTACCAACCATTGGATATTGCGTTCTACGACACAGATAGAGAATGTAATCTCAAGTGATGAAGATCGGAGTATGTGGGAAGCATGTAGACAAGCTCTTTCTGCATTTAACTTCGACGATGAAGAAAAGGACAAGATACTTGGAAAAGCATTTGGCCTTGTTCATTCTCCTTACTGGGGAGAAGATCGTGAGAAGGAAGTTCCCAAATTTGAGGCAGTAAATGGAACATTAGATTATCTAAGGAGTTTAAATCTTTCTGACGATGATTTGTCCAAGTTGCTTAAAAAATTTCCAGAAGTTCTTGGATGTAATTTAGAAGAAGAGTTGAAAGCTAATATAAAGATCCTGAAGGAGCAGTGGAGTATTGAAGGAAAATCTCTTAGGAACCTTCTCCTTCGAAATCCAAAAGTTTTGGGTTATAATATTGATTGTAAGGGAGATTGTAAGGCACAATGCACTAGATGCTGGGTTCGATTCTAG

Protein sequence

>Msa0177570

MECLNFASPSPSRRSGMVRKQLNSPLLATDSAAQFLCCKADLAGASSSIPSPNIRFLPSLAKAKWTSNHSTNHWILRSTTQIENVISSDEDRSMWEACRQALSAFNFDDEEKDKILGKAFGLVHSPYWGEDREKEVPKFEAVNGTLDYLRSLNLSDDDLSKLLKKFPEVLGCNLEEELKANIKILKEQWSIEGKSLRNLLLRNPKVLGYNIDCKGDCKAQCTRCWVRF*