Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030320 | sp|Q940Y9|POLL2_ARATH | 64.738 | 726 | 225 | 8 | 134 | 836 | 100 | 817 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022230 | Msa0030320 | 0.815326 | 9.791148e-52 | -8.615850e-47 |
| Msa0025060 | Msa0030320 | 0.831952 | 1.246514e-55 | -8.615850e-47 |
| Msa0025090 | Msa0030320 | 0.824995 | 5.966483e-54 | -8.615850e-47 |
| Msa0026120 | Msa0030320 | 0.800044 | 1.733257e-48 | -8.615850e-47 |
| Msa0030320 | Msa0038910 | 0.811002 | 8.702554e-51 | -8.615850e-47 |
| Msa0030320 | Msa0060740 | 0.827219 | 1.765522e-54 | -8.615850e-47 |
| Msa0030320 | Msa0063850 | 0.809426 | 1.903771e-50 | -8.615850e-47 |
| Msa0030320 | Msa0077920 | 0.926208 | 6.424310e-91 | -8.615850e-47 |
| Msa0030320 | Msa0086380 | 0.817631 | 2.983514e-52 | -8.615850e-47 |
| Msa0030320 | Msa0106810 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0030320 | Msa0112800 | 0.801910 | 7.204681e-49 | -8.615850e-47 |
| Msa0030320 | Msa0125810 | 0.910556 | 1.641701e-82 | -8.615850e-47 |
| Msa0030320 | Msa0133190 | 0.817706 | 2.869253e-52 | -8.615850e-47 |
| Msa0030320 | Msa0133250 | 0.822264 | 2.599133e-53 | -8.615850e-47 |
| Msa0030320 | Msa0136520 | 0.811399 | 7.139225e-51 | -8.615850e-47 |
| Msa0030320 | Msa0151810 | 0.815314 | 9.848128e-52 | -8.615850e-47 |
| Msa0030320 | Msa0153290 | 0.825283 | 5.100330e-54 | -8.615850e-47 |
| Msa0030320 | Msa0166580 | 0.814008 | 1.917468e-51 | -8.615850e-47 |
| Msa0030320 | Msa0170450 | 0.891947 | 2.492267e-74 | -8.615850e-47 |
| Msa0030320 | Msa0172110 | 0.807182 | 5.726761e-50 | -8.615850e-47 |
| Msa0030320 | Msa0208400 | 0.802984 | 4.327592e-49 | -8.615850e-47 |
| Msa0030320 | Msa0208560 | 0.801321 | 9.515389e-49 | -8.615850e-47 |
| Msa0030320 | Msa0249670 | 0.808807 | 2.582439e-50 | -8.615850e-47 |
| Msa0030320 | Msa0319060 | 0.812020 | 5.231013e-51 | -8.615850e-47 |
| Msa0030320 | Msa0357090 | 0.841403 | 4.855069e-58 | -8.615850e-47 |
| Msa0030320 | Msa0387180 | -0.834380 | 3.099139e-56 | -8.615850e-47 |
| Msa0030320 | Msa0437850 | 0.845288 | 4.458277e-59 | -8.615850e-47 |
| Msa0030320 | Msa0468050 | -0.812481 | 4.149367e-51 | -8.615850e-47 |
| Msa0030320 | Msa0563230 | 0.833977 | 3.910754e-56 | -8.615850e-47 |
| Msa0030320 | Msa0568810 | 0.815717 | 8.011196e-52 | -8.615850e-47 |
| Msa0030320 | Msa0604130 | 0.824433 | 8.092464e-54 | -8.615850e-47 |
| Msa0030320 | Msa0619460 | 0.821085 | 4.869091e-53 | -8.615850e-47 |
| Msa0030320 | Msa0636750 | 0.829730 | 4.372054e-55 | -8.615850e-47 |
| Msa0030320 | Msa0636760 | 0.821781 | 3.364297e-53 | -8.615850e-47 |
| Msa0030320 | Msa0659590 | 0.822937 | 1.813363e-53 | -8.615850e-47 |
| Msa0030320 | Msa0684910 | 0.823576 | 1.286198e-53 | -8.615850e-47 |
| Msa0030320 | Msa0684920 | 0.826925 | 2.075645e-54 | -8.615850e-47 |
| Msa0030320 | Msa0712100 | 0.808968 | 2.386017e-50 | -8.615850e-47 |
| Msa0030320 | Msa0722660 | 0.800419 | 1.454168e-48 | -8.615850e-47 |
| Msa0030320 | Msa0793160 | 0.811817 | 5.790970e-51 | -8.615850e-47 |
| Msa0030320 | Msa0882340 | 0.804855 | 1.767807e-49 | -8.615850e-47 |
| Msa0030320 | Msa0933050 | 0.805107 | 1.565720e-49 | -8.615850e-47 |
| Msa0030320 | Msa0979050 | -0.800826 | 1.201323e-48 | -8.615850e-47 |
| Msa0030320 | Msa1025650 | 0.806156 | 9.431950e-50 | -8.615850e-47 |
| Msa0030320 | Msa1081650 | 0.810456 | 1.142415e-50 | -8.615850e-47 |
| Msa0030320 | Msa1151970 | 0.817704 | 2.872755e-52 | -8.615850e-47 |
| Msa0030320 | Msa1192790 | 0.825677 | 4.113468e-54 | -8.615850e-47 |
| Msa0030320 | Msa1213460 | 0.800773 | 1.231567e-48 | -8.615850e-47 |
| Msa0030320 | Msa1258600 | -0.810502 | 1.116490e-50 | -8.615850e-47 |
| Msa0030320 | Msa1260510 | 0.802272 | 6.070850e-49 | -8.615850e-47 |
| Msa0030320 | Msa1304980 | -0.804047 | 2.605031e-49 | -8.615850e-47 |
| Msa0030320 | Msa1327400 | 0.828999 | 6.578904e-55 | -8.615850e-47 |
| Msa0030320 | Msa1327420 | 0.829568 | 4.785409e-55 | -8.615850e-47 |
| Msa0030320 | Msa1397550 | 0.810832 | 9.473449e-51 | -8.615850e-47 |
| Msa0030320 | Msa1400940 | -0.814233 | 1.710349e-51 | -8.615850e-47 |
| Msa0030320 | Msa1412830 | 0.805756 | 1.144489e-49 | -8.615850e-47 |
| Msa0030320 | Msa1414790 | 0.806133 | 9.539463e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030320 | MtrunA17_Chr1g0188021 | 92.299 | 857 | 43 | 5 | 1 | 836 | 1 | 855 | 0.0 | 1582 |
| Msa0030320 | MtrunA17_Chr7g0276651 | 25.074 | 674 | 415 | 17 | 200 | 829 | 197 | 824 | 2.67e-52 | 196 |
| Msa0030320 | MtrunA17_Chr2g0277131 | 23.885 | 695 | 433 | 16 | 182 | 829 | 237 | 882 | 8.11e-48 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030320 | AT5G43745.1 | 64.738 | 726 | 225 | 8 | 134 | 836 | 100 | 817 | 0.0 | 942 |
| Msa0030320 | AT5G02940.1 | 60.743 | 754 | 252 | 10 | 106 | 836 | 81 | 813 | 0.0 | 888 |
| Msa0030320 | AT5G02940.2 | 59.073 | 777 | 251 | 11 | 106 | 836 | 81 | 836 | 0.0 | 875 |
| Msa0030320 | AT5G49960.1 | 23.343 | 664 | 412 | 17 | 210 | 826 | 208 | 821 | 6.96e-47 | 180 |
| Msa0030320 | AT5G49960.3 | 24.009 | 454 | 293 | 9 | 210 | 657 | 208 | 615 | 7.40e-36 | 145 |
| Msa0030320 | AT5G49960.2 | 24.009 | 454 | 293 | 9 | 210 | 657 | 208 | 615 | 8.42e-36 | 145 |
Find 184 sgRNAs with CRISPR-Local
Find 502 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATGCAATTACCAAATTT+TGG | 0.068081 | 1_1:+56470624 | None:intergenic |
| ATTCAAAATGGTTTCCTTTA+AGG | 0.073901 | 1_1:+56472835 | None:intergenic |
| GTACCATGACTGAGCAATTT+AGG | 0.144000 | 1_1:-56476236 | Msa0030320:CDS |
| TTTCTGAGAGAGCATATTTA+AGG | 0.151867 | 1_1:-56470906 | Msa0030320:CDS |
| AGAAATTGTCGATTCAAAAT+TGG | 0.174597 | 1_1:-56472187 | Msa0030320:CDS |
| CATTAAATGACAGGATTATT+AGG | 0.177184 | 1_1:-56473026 | Msa0030320:CDS |
| CTAATAATCCTGTCATTTAA+TGG | 0.182682 | 1_1:+56473027 | None:intergenic |
| TCTGACAAAGATTGGCTTCT+TGG | 0.213550 | 1_1:-56472761 | Msa0030320:CDS |
| AGGGGTTCTGACTTTGAAAT+TGG | 0.214303 | 1_1:+56470751 | None:intergenic |
| AATTATGCTGAGAATAATTT+AGG | 0.217375 | 1_1:-56470660 | Msa0030320:three_prime_UTR |
| ACACGTATTGAGCGTGTTAT+TGG | 0.217615 | 1_1:-56476306 | Msa0030320:CDS |
| TTCCTCTGTCCAAATGAAAT+TGG | 0.236075 | 1_1:+56477557 | None:intergenic |
| AGAGCATTGAACAAATAATT+TGG | 0.238735 | 1_1:+56474452 | None:intergenic |
| TTGGCTTTGTTCTTGCAATA+TGG | 0.244797 | 1_1:-56476287 | Msa0030320:CDS |
| TCTCTCCTTCTTTCATATAA+AGG | 0.245635 | 1_1:+56470947 | None:intergenic |
| CCTTCAACCAATTCCAGATA+TGG | 0.255524 | 1_1:-56474672 | Msa0030320:CDS |
| CATGGACTACGGCACCTTAA+AGG | 0.272237 | 1_1:-56472849 | Msa0030320:CDS |
| TGCAGAATTTCATCATCATT+TGG | 0.285455 | 1_1:+56473844 | None:intergenic |
| TTCATTCAATTCACTATTCT+CGG | 0.286894 | 1_1:+56471876 | None:intergenic |
| GAAATTGTCGATTCAAAATT+GGG | 0.301885 | 1_1:-56472186 | Msa0030320:CDS |
| ATAGTGAATTGAATGAAGTT+TGG | 0.306785 | 1_1:-56471870 | Msa0030320:CDS |
| CTGTTGTATGTGGTCTTTAC+CGG | 0.310048 | 1_1:-56473888 | Msa0030320:CDS |
| TGAAGTCTGAATATTCAAAA+TGG | 0.312714 | 1_1:+56472823 | None:intergenic |
| CAAAATTTGGTAATTGCATT+GGG | 0.325134 | 1_1:-56470623 | Msa0030320:three_prime_UTR |
| CCTCGTTAGGTATTGTTCAT+TGG | 0.325696 | 1_1:-56473726 | Msa0030320:intron |
| TGGCTTTGTTCTTGCAATAT+GGG | 0.327052 | 1_1:-56476286 | Msa0030320:CDS |
| CTTGCATATCTGACAAAGAT+TGG | 0.330744 | 1_1:-56472769 | Msa0030320:CDS |
| GATATGCAAGCAATTGAAAA+AGG | 0.332048 | 1_1:+56472782 | None:intergenic |
| CTTCAACAAGTCACATGTTT+GGG | 0.332614 | 1_1:+56474518 | None:intergenic |
| AGTAAAAGAATGCATTCTTT+TGG | 0.333418 | 1_1:+56473418 | None:intergenic |
| TACCATGACTGAGCAATTTA+GGG | 0.339081 | 1_1:-56476235 | Msa0030320:intron |
| GCAGAATTTCATCATCATTT+GGG | 0.346170 | 1_1:+56473845 | None:intergenic |
| ATTAAATGACAGGATTATTA+GGG | 0.346750 | 1_1:-56473025 | Msa0030320:CDS |
| CAAACGAGATGCATGCTATA+AGG | 0.354402 | 1_1:+56476906 | None:intergenic |
| TGCAGCTTGCCTGATCTTGA+AGG | 0.354653 | 1_1:-56474038 | Msa0030320:CDS |
| ATGTTCACTATGTTCTGAAT+TGG | 0.356478 | 1_1:+56477599 | None:intergenic |
| TTAAATGTAAAATATGTAAA+TGG | 0.362555 | 1_1:-56470495 | Msa0030320:three_prime_UTR |
| CCACAAGTTATAACCACAAA+TGG | 0.365342 | 1_1:-56473681 | Msa0030320:CDS |
| TCTCGGTCCTGGAAGTGTTT+TGG | 0.368444 | 1_1:-56473347 | Msa0030320:intron |
| CCAAAATTTGGTAATTGCAT+TGG | 0.369364 | 1_1:-56470624 | Msa0030320:three_prime_UTR |
| ACTTCAACAAGTCACATGTT+TGG | 0.378442 | 1_1:+56474517 | None:intergenic |
| ATGTGAGCACCAATTTCATT+TGG | 0.382678 | 1_1:-56477566 | Msa0030320:CDS |
| AGAATGTTCGAGTTTCTCAT+AGG | 0.392413 | 1_1:-56472975 | Msa0030320:CDS |
| CTTTAAGGTGCCGTAGTCCA+TGG | 0.393693 | 1_1:+56472850 | None:intergenic |
| GTGGAGACAGAACCCATATC+TGG | 0.395837 | 1_1:+56474659 | None:intergenic |
| AAACATACCAAAACACTTCC+AGG | 0.411264 | 1_1:+56473340 | None:intergenic |
| ATTGATATATGTAGGTTTCA+AGG | 0.414000 | 1_1:-56474542 | Msa0030320:intron |
| ATAATTATACTGCCAGCAAA+AGG | 0.414426 | 1_1:-56475477 | Msa0030320:CDS |
| TATGTGGTCTTTACCGGAAT+GGG | 0.416645 | 1_1:-56473882 | Msa0030320:CDS |
| AAGTGGCTTGGGTGTATTCA+AGG | 0.417434 | 1_1:+56477141 | None:intergenic |
| GACGTCTAATTTAAGTGGCT+TGG | 0.421179 | 1_1:+56477129 | None:intergenic |
| CTGACACACACAAAGTTTGT+TGG | 0.421792 | 1_1:-56477253 | Msa0030320:CDS |
| ACCGATCATATCATTATTTG+TGG | 0.426209 | 1_1:-56476091 | Msa0030320:CDS |
| CCATTTGTGGTTATAACTTG+TGG | 0.429550 | 1_1:+56473681 | None:intergenic |
| AGTGTCTCACAATTATTATA+AGG | 0.430018 | 1_1:+56478515 | None:intergenic |
| TTCCAAGAAAACAGATTGAT+AGG | 0.432088 | 1_1:-56475865 | Msa0030320:CDS |
| TTGGAAGATCAGACATAAGA+AGG | 0.434726 | 1_1:+56475882 | None:intergenic |
| TTGGATGCAACATCTTCTAC+TGG | 0.434987 | 1_1:+56474471 | None:intergenic |
| TTGAATCATTTCTACAACAT+CGG | 0.436367 | 1_1:+56473384 | None:intergenic |
| GTTCTTCTTCACATAACCTA+TGG | 0.436383 | 1_1:+56470873 | None:intergenic |
| ACGTCTAATTTAAGTGGCTT+GGG | 0.442990 | 1_1:+56477130 | None:intergenic |
| ACAGAACCCATATCTGGAAT+TGG | 0.446217 | 1_1:+56474665 | None:intergenic |
| TGAATCATTTCTACAACATC+GGG | 0.447283 | 1_1:+56473385 | None:intergenic |
| ACACCAACAACAAGAATTCC+AGG | 0.447705 | 1_1:-56478370 | Msa0030320:intron |
| GGGGTTCTGACTTTGAAATT+GGG | 0.448435 | 1_1:+56470752 | None:intergenic |
| CTTCAACCAATTCCAGATAT+GGG | 0.456773 | 1_1:-56474671 | Msa0030320:CDS |
| CGAATACCACGCCTGTGTAA+TGG | 0.458509 | 1_1:+56477851 | None:intergenic |
| ACATGCACTCCTGTCTTCCA+TGG | 0.460579 | 1_1:-56478427 | Msa0030320:CDS |
| GGAAAATAATAGTAGCTCTC+AGG | 0.460845 | 1_1:-56477538 | Msa0030320:intron |
| TATTCAGACTTCATTGAAGA+AGG | 0.463327 | 1_1:-56472813 | Msa0030320:CDS |
| TTTAAGGTGCCGTAGTCCAT+GGG | 0.463795 | 1_1:+56472851 | None:intergenic |
| TTGTGCCCTGTCATATCAGC+TGG | 0.468222 | 1_1:-56477892 | Msa0030320:CDS |
| AGAGTAATATGCAAAGGCTC+AGG | 0.468992 | 1_1:-56476141 | Msa0030320:CDS |
| GACTTGTTGAAGTCAATCTC+GGG | 0.469582 | 1_1:-56474507 | Msa0030320:CDS |
| CCATATCTGGAATTGGTTGA+AGG | 0.469691 | 1_1:+56474672 | None:intergenic |
| TATGTCATTCCTTCAAGATC+AGG | 0.471383 | 1_1:+56474029 | None:intergenic |
| TTCTGTCTCCACAATAGTTG+AGG | 0.475729 | 1_1:-56474648 | Msa0030320:intron |
| TTATTTCAGGCTGTTGTATG+TGG | 0.479952 | 1_1:-56473898 | Msa0030320:intron |
| GTACCTGGAATTCTTGTTGT+TGG | 0.483183 | 1_1:+56478367 | None:intergenic |
| TCAGAAAGCTCGGAAAATGA+TGG | 0.485822 | 1_1:+56470922 | None:intergenic |
| ATTAGCCTTTATATGAAAGA+AGG | 0.487807 | 1_1:-56470952 | Msa0030320:CDS |
| GGCTTTGTTCTTGCAATATG+GGG | 0.488366 | 1_1:-56476285 | Msa0030320:CDS |
| AATGACCTTGAGCAGTTACA+AGG | 0.490244 | 1_1:+56472004 | None:intergenic |
| TATGAGAACTATCTCGGTCC+TGG | 0.491562 | 1_1:-56473358 | Msa0030320:CDS |
| GACTCTTGACGGAACAAGCT+TGG | 0.493689 | 1_1:-56477185 | Msa0030320:CDS |
| TTTAGCTGCTTTAATATGAA+AGG | 0.497921 | 1_1:+56476052 | None:intergenic |
| GTGGCTTATTAGTATTCTGA+AGG | 0.498207 | 1_1:+56473700 | None:intergenic |
| CAGAGACGCCATTAAATGAC+AGG | 0.499203 | 1_1:-56473035 | Msa0030320:CDS |
| GACAAAGATTGGCTTCTTGG+AGG | 0.500058 | 1_1:-56472758 | Msa0030320:CDS |
| CCTGTCATATCAGCTGGCTC+AGG | 0.500403 | 1_1:-56477886 | Msa0030320:CDS |
| TATTTCCTCCGCCGCAACAT+AGG | 0.501247 | 1_1:+56472032 | None:intergenic |
| ATTGATAGTCATATCTGAGC+TGG | 0.501789 | 1_1:-56470707 | Msa0030320:CDS |
| TCTGAATTGGAATTAAAAGC+TGG | 0.502397 | 1_1:+56477612 | None:intergenic |
| TATGTGCCTCAGACTCTTGA+CGG | 0.505688 | 1_1:-56477196 | Msa0030320:CDS |
| TAATTATACTGCCAGCAAAA+GGG | 0.507131 | 1_1:-56475476 | Msa0030320:CDS |
| AAGGACTTATAAAGATCTAC+AGG | 0.509152 | 1_1:-56474422 | Msa0030320:CDS |
| GTTTCTTGTTCTTCAAGCTA+AGG | 0.510347 | 1_1:-56476871 | Msa0030320:intron |
| CCTGAGCCAGCTGATATGAC+AGG | 0.511177 | 1_1:+56477886 | None:intergenic |
| TGACTTGTTGAAGTCAATCT+CGG | 0.511323 | 1_1:-56474508 | Msa0030320:CDS |
| CATCTAATATCATGAAAAGA+AGG | 0.511608 | 1_1:+56477100 | None:intergenic |
| CCTTGGAATCCATGGAAGAC+AGG | 0.513471 | 1_1:+56478418 | None:intergenic |
| AATTATTTGTTCAATGCTCT+CGG | 0.514496 | 1_1:-56474449 | Msa0030320:CDS |
| ATAACCACAAATGGGAAAGA+AGG | 0.514985 | 1_1:-56473672 | Msa0030320:CDS |
| GTAACGCGTCCTAACAGATC+TGG | 0.516914 | 1_1:-56473567 | Msa0030320:CDS |
| AGTGACCTATGTTGCGGCGG+AGG | 0.517374 | 1_1:-56472037 | Msa0030320:CDS |
| CACAAGTTATAACCACAAAT+GGG | 0.517797 | 1_1:-56473680 | Msa0030320:CDS |
| GTTCAATGCTCTCGGCAGAA+AGG | 0.520032 | 1_1:-56474441 | Msa0030320:CDS |
| ATCTTGAAGGAATGACATAT+AGG | 0.524524 | 1_1:-56474025 | Msa0030320:CDS |
| GCACATATCGAACTATTGCT+TGG | 0.525302 | 1_1:+56477212 | None:intergenic |
| GTCAGTCAATTCAAGAGAGA+GGG | 0.525834 | 1_1:+56470732 | None:intergenic |
| CAGGAACAATAAACAATCGC+TGG | 0.527874 | 1_1:-56476503 | Msa0030320:CDS |
| TCTTACTTTACTCAATTCGA+TGG | 0.529133 | 1_1:+56473602 | None:intergenic |
| AAGGTGACGTCTAATTTAAG+TGG | 0.532018 | 1_1:+56477124 | None:intergenic |
| CAGCATAATTACAAAATGAC+CGG | 0.533687 | 1_1:+56470673 | None:intergenic |
| AATGGGAAAGAAGGAAAAGA+TGG | 0.536238 | 1_1:-56473663 | Msa0030320:CDS |
| AATTATACTGCCAGCAAAAG+GGG | 0.536630 | 1_1:-56475475 | Msa0030320:CDS |
| CAAGAGTATGAGAACTATCT+CGG | 0.537222 | 1_1:-56473364 | Msa0030320:CDS |
| CCAACAAACCTCAACTATTG+TGG | 0.537695 | 1_1:+56474640 | None:intergenic |
| CACGAGTTTGCTGTTCGCCT+AGG | 0.538803 | 1_1:-56476022 | Msa0030320:CDS |
| TTGAGCCTTGTAACTGCTCA+AGG | 0.539272 | 1_1:-56472009 | Msa0030320:intron |
| ATATGCTCTCTCAGAAAGCT+CGG | 0.542579 | 1_1:+56470912 | None:intergenic |
| ATCACCATTTAGGCAGCAGA+CGG | 0.544517 | 1_1:-56473451 | Msa0030320:intron |
| CCGATCATATCATTATTTGT+GGG | 0.545928 | 1_1:-56476090 | Msa0030320:CDS |
| GTGGAAGTGAGTGAGATTCA+TGG | 0.547458 | 1_1:+56478448 | None:intergenic |
| ATTATTAGGGAAAACATCGT+TGG | 0.550733 | 1_1:-56473012 | Msa0030320:CDS |
| CCTGTCTTCCATGGATTCCA+AGG | 0.554780 | 1_1:-56478418 | Msa0030320:CDS |
| TACTGCCAGCAAAAGGGGAT+CGG | 0.554950 | 1_1:-56475470 | Msa0030320:intron |
| ACCTTGGAACCAGATCTGTT+AGG | 0.555505 | 1_1:+56473558 | None:intergenic |
| ATGTAAACCCTGTAGGGAGA+TGG | 0.559911 | 1_1:-56477653 | Msa0030320:intron |
| CATATCTGGAATTGGTTGAA+GGG | 0.560971 | 1_1:+56474673 | None:intergenic |
| GTATGTGGTCTTTACCGGAA+TGG | 0.565150 | 1_1:-56473883 | Msa0030320:CDS |
| CACGAAATATTTGACTGACT+CGG | 0.565620 | 1_1:-56478540 | Msa0030320:five_prime_UTR |
| TACCCTAAATTGCTCAGTCA+TGG | 0.565657 | 1_1:+56476233 | None:intergenic |
| TATGTGTGCCTTGGAATCCA+TGG | 0.565777 | 1_1:+56478410 | None:intergenic |
| TTAAGGAGAGAAGTAGCCAT+AGG | 0.566286 | 1_1:-56470889 | Msa0030320:CDS |
| ATTGGAAACCCCATGGACTA+CGG | 0.567157 | 1_1:-56472860 | Msa0030320:CDS |
| GAATGTTCGAGTTTCTCATA+GGG | 0.567985 | 1_1:-56472974 | Msa0030320:intron |
| CACCAATTTCATTTGGACAG+AGG | 0.569663 | 1_1:-56477559 | Msa0030320:CDS |
| GGGAGCACAAATGCAAGTCA+TGG | 0.570238 | 1_1:-56476116 | Msa0030320:CDS |
| GCATATGCTACAGGGTCGAC+AGG | 0.571946 | 1_1:-56477320 | Msa0030320:intron |
| TAGGCAGCAGACGGGAATGT+AGG | 0.574180 | 1_1:-56473442 | Msa0030320:CDS |
| GATGAGCAGTATGTGTGCCT+TGG | 0.581395 | 1_1:+56478401 | None:intergenic |
| TCACCATTTAGGCAGCAGAC+GGG | 0.585510 | 1_1:-56473450 | Msa0030320:intron |
| TGAGCTGGAAGGTGAACAGC+CGG | 0.586773 | 1_1:-56470692 | Msa0030320:CDS |
| CGCAACAGAGTAATATGCAA+AGG | 0.588880 | 1_1:-56476147 | Msa0030320:intron |
| GAATTTCATCATCATTTGGG+TGG | 0.590474 | 1_1:+56473848 | None:intergenic |
| TGCAACTCACCTTCAGTGTG+TGG | 0.593529 | 1_1:+56477827 | None:intergenic |
| TCCTAACAGATCTGGTTCCA+AGG | 0.594226 | 1_1:-56473559 | Msa0030320:intron |
| GAGTAATATGCAAAGGCTCA+GGG | 0.597688 | 1_1:-56476140 | Msa0030320:CDS |
| CCCACAAATAATGATATGAT+CGG | 0.599046 | 1_1:+56476090 | None:intergenic |
| AGTCAGTCAATTCAAGAGAG+AGG | 0.599157 | 1_1:+56470731 | None:intergenic |
| ACCTAGCTGAAGCAGTGCCT+AGG | 0.600093 | 1_1:+56476005 | None:intergenic |
| AGCGTCGATACCTCTTGCTA+AGG | 0.600603 | 1_1:+56475801 | None:intergenic |
| AATATCATGAAAAGAAGGCA+AGG | 0.601450 | 1_1:+56477105 | None:intergenic |
| ATGGAAGACAGGAGTGCATG+TGG | 0.603280 | 1_1:+56478429 | None:intergenic |
| GCCGCAACATAGGTCACTGA+TGG | 0.603508 | 1_1:+56472042 | None:intergenic |
| CCACGCCTGTGTAATGGAGA+AGG | 0.603866 | 1_1:+56477857 | None:intergenic |
| GGGTGATGAAATATATGTGA+AGG | 0.604673 | 1_1:-56471827 | Msa0030320:intron |
| GCCATCAGTGACCTATGTTG+CGG | 0.607641 | 1_1:-56472043 | Msa0030320:CDS |
| TGGCTTATTAGTATTCTGAA+GGG | 0.612456 | 1_1:+56473701 | None:intergenic |
| AAAATTTGGTAATTGCATTG+GGG | 0.616593 | 1_1:-56470622 | Msa0030320:three_prime_UTR |
| TCTCACTCTGCTCCTAGTAG+TGG | 0.618226 | 1_1:+56478480 | None:intergenic |
| CTTGTTCCGTCAAGAGTCTG+AGG | 0.618450 | 1_1:+56477190 | None:intergenic |
| GAAAGACATACTAGATGCAG+AGG | 0.618766 | 1_1:-56471848 | Msa0030320:CDS |
| ATATTGATCTCCTTAGCAAG+AGG | 0.619450 | 1_1:-56475811 | Msa0030320:intron |
| ATCAGTGACCTATGTTGCGG+CGG | 0.620787 | 1_1:-56472040 | Msa0030320:CDS |
| AAATTGTCGATTCAAAATTG+GGG | 0.621368 | 1_1:-56472185 | Msa0030320:CDS |
| AAACCCTGTAGGGAGATGGC+AGG | 0.622638 | 1_1:-56477649 | Msa0030320:intron |
| ACTATAGATTGGAAACCCCA+TGG | 0.633543 | 1_1:-56472867 | Msa0030320:intron |
| CCTTCTCCATTACACAGGCG+TGG | 0.637605 | 1_1:-56477857 | Msa0030320:CDS |
| TCAGTCAATTCAAGAGAGAG+GGG | 0.638151 | 1_1:+56470733 | None:intergenic |
| AAGTGAGTGAGATTCATGGC+TGG | 0.639373 | 1_1:+56478452 | None:intergenic |
| GGTATTCGACCACACACTGA+AGG | 0.641674 | 1_1:-56477836 | Msa0030320:intron |
| CTTCACCTTCTCCATTACAC+AGG | 0.646584 | 1_1:-56477862 | Msa0030320:CDS |
| CTGAGCCAGCTGATATGACA+GGG | 0.647653 | 1_1:+56477887 | None:intergenic |
| ATAGTCATATCTGAGCTGGA+AGG | 0.647720 | 1_1:-56470703 | Msa0030320:CDS |
| ATAACACGCTCAATACGTGT+TGG | 0.648660 | 1_1:+56476309 | None:intergenic |
| GCCTAGGCACTGCTTCAGCT+AGG | 0.650589 | 1_1:-56476006 | Msa0030320:intron |
| ATATTAGATGGAGCTTAGCG+CGG | 0.663174 | 1_1:-56477087 | Msa0030320:CDS |
| AATATGCAAAGGCTCAGGGA+GGG | 0.673017 | 1_1:-56476136 | Msa0030320:CDS |
| TAATATGCAAAGGCTCAGGG+AGG | 0.678347 | 1_1:-56476137 | Msa0030320:CDS |
| TTAAGGTGCCGTAGTCCATG+GGG | 0.678704 | 1_1:+56472852 | None:intergenic |
| ACTTGTTGAAGTCAATCTCG+GGG | 0.695230 | 1_1:-56474506 | Msa0030320:CDS |
| AAAGACATACTAGATGCAGA+GGG | 0.713150 | 1_1:-56471847 | Msa0030320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATGATTAATTTAATTAA+TGG | + | chr1_1:56473326-56473345 | None:intergenic | 10.0% |
| !!! | ATAAATTATTCATTCAATTT+TGG | - | chr1_1:56474732-56474751 | Msa0030320:intron | 10.0% |
| !! | TAAAAAAAAATATTAAACAC+CGG | + | chr1_1:56474883-56474902 | None:intergenic | 10.0% |
| !! | CATTAATGTAAAATTATAAA+TGG | + | chr1_1:56475036-56475055 | None:intergenic | 10.0% |
| !!! | ATATTTTTATTATTGTTTTG+CGG | + | chr1_1:56475742-56475761 | None:intergenic | 10.0% |
| !!! | TAATATTTTTTTGTTATGAT+AGG | - | chr1_1:56476373-56476392 | Msa0030320:intron | 10.0% |
| !!! | TTTATTTTTTCTTATTATAC+AGG | - | chr1_1:56477994-56478013 | Msa0030320:intron | 10.0% |
| !!! | GTTTTATTTTGAATAATAAT+TGG | - | chr1_1:56478151-56478170 | Msa0030320:intron | 10.0% |
| !! | TTAAATGTAAAATATGTAAA+TGG | - | chr1_1:56478476-56478495 | Msa0030320:five_prime_UTR | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473759-56473778 | Msa0030320:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473759-56473778 | Msa0030320:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473759-56473778 | Msa0030320:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473759-56473778 | Msa0030320:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473759-56473778 | Msa0030320:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473759-56473778 | Msa0030320:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473759-56473778 | Msa0030320:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473759-56473778 | Msa0030320:intron | 100.0% |
| !! | TCATTATCTGTTAAAAAATT+TGG | + | chr1_1:56470849-56470868 | None:intergenic | 15.0% |
| !!! | TTTTGAACATAAAACATTAA+AGG | + | chr1_1:56471556-56471575 | None:intergenic | 15.0% |
| !!! | TGTTCAAAATTCAAATATTT+TGG | - | chr1_1:56471567-56471586 | Msa0030320:intron | 15.0% |
| !!! | TTATATATGTTTGTTAATCT+GGG | - | chr1_1:56472429-56472448 | Msa0030320:intron | 15.0% |
| !! | ATGTATATTTGAATAGAATA+AGG | - | chr1_1:56473275-56473294 | Msa0030320:intron | 15.0% |
| !! | TGTATATTTGAATAGAATAA+GGG | - | chr1_1:56473276-56473295 | Msa0030320:intron | 15.0% |
| !!! | AAATGATTTTGTTAAACTAA+GGG | + | chr1_1:56473444-56473463 | None:intergenic | 15.0% |
| !! | CAATTAAGAAAATTTCAAAT+AGG | + | chr1_1:56474413-56474432 | None:intergenic | 15.0% |
| !!! | TTTTCTTAATTGATATATGT+AGG | - | chr1_1:56474421-56474440 | Msa0030320:CDS | 15.0% |
| !! | CTATATATTGATATTATTTC+AGG | - | chr1_1:56475060-56475079 | Msa0030320:intron | 15.0% |
| !! | TTTAGAAAATTCAAGATAAA+AGG | + | chr1_1:56475216-56475235 | None:intergenic | 15.0% |
| !! | AATCTCTTTGATAAATTATA+TGG | + | chr1_1:56477353-56477372 | None:intergenic | 15.0% |
| !! | CATTCCAAAAAATTTATATA+TGG | - | chr1_1:56477664-56477683 | Msa0030320:intron | 15.0% |
| !!! | CAAACCATATATAAATTTTT+TGG | + | chr1_1:56477671-56477690 | None:intergenic | 15.0% |
| !! | ATAAATCATGTTCAAATTTA+TGG | + | chr1_1:56477841-56477860 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTCAGAATAAAT+TGG | - | chr1_1:56478440-56478459 | Msa0030320:CDS | 15.0% |
| !!! | AAAGTTGTTAACATTTTATT+TGG | - | chr1_1:56478548-56478567 | Msa0030320:five_prime_UTR | 15.0% |
| !!! | AAGTTTATTGTTGTTTTCAA+TGG | - | chr1_1:56470908-56470927 | Msa0030320:CDS | 20.0% |
| !!! | AAAATGTACAAAAGTATTGA+TGG | - | chr1_1:56471482-56471501 | Msa0030320:intron | 20.0% |
| !! | ACTTAAAAGCTATAAATACA+AGG | - | chr1_1:56472329-56472348 | Msa0030320:intron | 20.0% |
| !!! | CTTATATATGTTTGTTAATC+TGG | - | chr1_1:56472428-56472447 | Msa0030320:intron | 20.0% |
| !!! | TACTCATTTAAAAGTATGTT+CGG | - | chr1_1:56472534-56472553 | Msa0030320:intron | 20.0% |
| !! | CTAGGTAAATATTTCATAAA+AGG | - | chr1_1:56472983-56473002 | Msa0030320:CDS | 20.0% |
| !!! | AATAGTATTTTTACAAAAGC+CGG | + | chr1_1:56473220-56473239 | None:intergenic | 20.0% |
| !!! | CAAATGATTTTGTTAAACTA+AGG | + | chr1_1:56473445-56473464 | None:intergenic | 20.0% |
| !! | ATTAAATTAAATCGTACTCT+TGG | + | chr1_1:56473876-56473895 | None:intergenic | 20.0% |
| !! | TTTCATACCTAACAATATAA+AGG | + | chr1_1:56474248-56474267 | None:intergenic | 20.0% |
| !! | TAATAGAAAATCTAGGAAAT+AGG | + | chr1_1:56474640-56474659 | None:intergenic | 20.0% |
| !!! | ATTTCCTAGATTTTCTATTA+TGG | - | chr1_1:56474640-56474659 | Msa0030320:intron | 20.0% |
| !! | AATACCATAATAGAAAATCT+AGG | + | chr1_1:56474647-56474666 | None:intergenic | 20.0% |
| !!! | AAATCAATACAAGTTTTAAC+TGG | + | chr1_1:56474832-56474851 | None:intergenic | 20.0% |
| !! | TTGGAGATTATGTAATAATA+TGG | - | chr1_1:56475880-56475899 | Msa0030320:CDS | 20.0% |
| !! | ATTAAATGACAGGATTATTA+GGG | - | chr1_1:56475946-56475965 | Msa0030320:intron | 20.0% |
| !! | CAAAAAATTGTAACTGAAAA+TGG | - | chr1_1:56476246-56476265 | Msa0030320:CDS | 20.0% |
| !! | AAGTTAGTAATATTTCCAAA+AGG | + | chr1_1:56476406-56476425 | None:intergenic | 20.0% |
| !! | TACTAACTTCTCTAAATATA+TGG | - | chr1_1:56476417-56476436 | Msa0030320:intron | 20.0% |
| !! | ATGTAGTTGAAATTTGAAAA+GGG | + | chr1_1:56476480-56476499 | None:intergenic | 20.0% |
| !! | AATGTAGTTGAAATTTGAAA+AGG | + | chr1_1:56476481-56476500 | None:intergenic | 20.0% |
| !! | GAAAAATATGTGACATAATT+AGG | + | chr1_1:56476527-56476546 | None:intergenic | 20.0% |
| !! | TCTATCATAGTATTTACTAT+AGG | + | chr1_1:56476555-56476574 | None:intergenic | 20.0% |
| !!! | AAATAAGTCTTGACTATTTT+GGG | + | chr1_1:56477380-56477399 | None:intergenic | 20.0% |
| !! | AATTATGCTGAGAATAATTT+AGG | - | chr1_1:56478311-56478330 | Msa0030320:intron | 20.0% |
| ! | AGTGTCTCACAATTATTATA+AGG | + | chr1_1:56470459-56470478 | None:intergenic | 25.0% |
| ! | ATCATTTCCATAATTGAGTT+GGG | + | chr1_1:56470702-56470721 | None:intergenic | 25.0% |
| ! | TATCATTTCCATAATTGAGT+TGG | + | chr1_1:56470703-56470722 | None:intergenic | 25.0% |
| !! | AGTCATGGTTCAAATTTTAT+AGG | - | chr1_1:56470767-56470786 | Msa0030320:intron | 25.0% |
| !! | GGTTCAAATTTTATAGGAAA+TGG | - | chr1_1:56470773-56470792 | Msa0030320:intron | 25.0% |
| ! | ATCAGCAATAGTTGAATAAT+GGG | + | chr1_1:56470974-56470993 | None:intergenic | 25.0% |
| ! | ATAAGGACAGCAAAAAAAAA+AGG | + | chr1_1:56471202-56471221 | None:intergenic | 25.0% |
| ! | TTAATTAAGCGTATAGTTTC+AGG | + | chr1_1:56471299-56471318 | None:intergenic | 25.0% |
| ! | TTAATTAATGTAAACCCTGT+AGG | - | chr1_1:56471311-56471330 | Msa0030320:intron | 25.0% |
| ! | TAATTAATGTAAACCCTGTA+GGG | - | chr1_1:56471312-56471331 | Msa0030320:intron | 25.0% |
| !!! | ATTCAAATATTTTGGTGCAA+TGG | - | chr1_1:56471575-56471594 | Msa0030320:intron | 25.0% |
| ! | CATCTAATATCATGAAAAGA+AGG | + | chr1_1:56471874-56471893 | None:intergenic | 25.0% |
| !! | CTTCTTTTCATGATATTAGA+TGG | - | chr1_1:56471872-56471891 | Msa0030320:CDS | 25.0% |
| ! | TAATCACTTCATTGCTTATT+TGG | - | chr1_1:56471957-56471976 | Msa0030320:intron | 25.0% |
| !!! | GTTAACTTGTTCTTATTTTG+TGG | - | chr1_1:56472153-56472172 | Msa0030320:intron | 25.0% |
| ! | TGTGGTTTCATTATTGTAAA+TGG | - | chr1_1:56472171-56472190 | Msa0030320:intron | 25.0% |
| ! | GTTCCTGGATAATTTAATAA+TGG | + | chr1_1:56472455-56472474 | None:intergenic | 25.0% |
| !! | AAAGTATGTTCGGTTTATTT+TGG | - | chr1_1:56472544-56472563 | Msa0030320:intron | 25.0% |
| !!! | TTATTTTGGACTTCATAATC+TGG | - | chr1_1:56472558-56472577 | Msa0030320:intron | 25.0% |
| ! | GTGTTTATAAGCAATTTGAA+AGG | + | chr1_1:56472598-56472617 | None:intergenic | 25.0% |
| ! | GCACAGAAATATATTGTTTA+AGG | + | chr1_1:56472785-56472804 | None:intergenic | 25.0% |
| !! | TTTAGCTGCTTTAATATGAA+AGG | + | chr1_1:56472922-56472941 | None:intergenic | 25.0% |
| ! | AACCAGAAATTTCAATTATG+AGG | + | chr1_1:56473411-56473430 | None:intergenic | 25.0% |
| ! | TGATCTACTTAAATTGCTAA+TGG | - | chr1_1:56473531-56473550 | Msa0030320:intron | 25.0% |
| ! | ACTTAAATTGCTAATGGTAT+AGG | - | chr1_1:56473537-56473556 | Msa0030320:intron | 25.0% |
| !! | TTTATTATTGAAAGTGTGTG+AGG | - | chr1_1:56473608-56473627 | Msa0030320:CDS | 25.0% |
| !! | TTATTATTGAAAGTGTGTGA+GGG | - | chr1_1:56473609-56473628 | Msa0030320:CDS | 25.0% |
| !!! | TGTTATGGAGATTTTAGAAT+TGG | - | chr1_1:56473733-56473752 | Msa0030320:intron | 25.0% |
| !!! | GTTATGGAGATTTTAGAATT+GGG | - | chr1_1:56473734-56473753 | Msa0030320:intron | 25.0% |
| !!! | TTATGGAGATTTTAGAATTG+GGG | - | chr1_1:56473735-56473754 | Msa0030320:intron | 25.0% |
| ! | GAATTACTAATCTGAATGAT+TGG | - | chr1_1:56473792-56473811 | Msa0030320:intron | 25.0% |
| ! | TACATATTAACTCATACTCA+TGG | + | chr1_1:56473821-56473840 | None:intergenic | 25.0% |
| ! | ATGAGTATGAGTTAATATGT+AGG | - | chr1_1:56473820-56473839 | Msa0030320:intron | 25.0% |
| ! | AGATCATTAGTCCTAATTAT+TGG | - | chr1_1:56473909-56473928 | Msa0030320:intron | 25.0% |
| ! | GATCATTAGTCCTAATTATT+GGG | - | chr1_1:56473910-56473929 | Msa0030320:intron | 25.0% |
| ! | CTAAAAAGTAATAGAAGCTA+AGG | + | chr1_1:56473977-56473996 | None:intergenic | 25.0% |
| ! | ATTCTGAATTCACTTTGATA+AGG | - | chr1_1:56474206-56474225 | Msa0030320:intron | 25.0% |
| ! | TTCAGATCCTTTATATTGTT+AGG | - | chr1_1:56474238-56474257 | Msa0030320:intron | 25.0% |
| ! | ATTGATATATGTAGGTTTCA+AGG | - | chr1_1:56474429-56474448 | Msa0030320:CDS | 25.0% |
| !!! | AGAGCATTGAACAAATAATT+TGG | + | chr1_1:56474522-56474541 | None:intergenic | 25.0% |
| ! | AATTATTTGTTCAATGCTCT+CGG | - | chr1_1:56474522-56474541 | Msa0030320:CDS | 25.0% |
| !!! | TATTCATTCAATTTTGGTAC+CGG | - | chr1_1:56474738-56474757 | Msa0030320:intron | 25.0% |
| !!! | TAAATTCATTTTTCCTCGTT+AGG | - | chr1_1:56475232-56475251 | Msa0030320:intron | 25.0% |
| ! | TAAATGGTGATAAGTGATAA+AGG | + | chr1_1:56475511-56475530 | None:intergenic | 25.0% |
| ! | TTTATCACTTATCACCATTT+AGG | - | chr1_1:56475510-56475529 | Msa0030320:CDS | 25.0% |
| !! | AGTAAAAGAATGCATTCTTT+TGG | + | chr1_1:56475556-56475575 | None:intergenic | 25.0% |
| !! | AAAGAATGCATTCTTTTACT+TGG | - | chr1_1:56475556-56475575 | Msa0030320:intron | 25.0% |
| !! | AAGAATGCATTCTTTTACTT+GGG | - | chr1_1:56475557-56475576 | Msa0030320:intron | 25.0% |
| ! | TTGAATCATTTCTACAACAT+CGG | + | chr1_1:56475590-56475609 | None:intergenic | 25.0% |
| !! | TTTGGTATGTTTATGTGTTT+TGG | - | chr1_1:56475642-56475661 | Msa0030320:intron | 25.0% |
| ! | AAACTTCCTGCATATTATTA+TGG | + | chr1_1:56475913-56475932 | None:intergenic | 25.0% |
| !! | CTAATAATCCTGTCATTTAA+TGG | + | chr1_1:56475947-56475966 | None:intergenic | 25.0% |
| ! | CATTAAATGACAGGATTATT+AGG | - | chr1_1:56475945-56475964 | Msa0030320:intron | 25.0% |
| !! | TTCTTTTGGATACTATAGAT+TGG | - | chr1_1:56476093-56476112 | Msa0030320:CDS | 25.0% |
| ! | ATTCAAAATGGTTTCCTTTA+AGG | + | chr1_1:56476139-56476158 | None:intergenic | 25.0% |
| ! | TGAAGTCTGAATATTCAAAA+TGG | + | chr1_1:56476151-56476170 | None:intergenic | 25.0% |
| !!! | ATGATAGGATTTTTTCCTTT+TGG | - | chr1_1:56476388-56476407 | Msa0030320:intron | 25.0% |
| !!! | AGAAATTGTCGATTCAAAAT+TGG | - | chr1_1:56476784-56476803 | Msa0030320:intron | 25.0% |
| !!! | GAAATTGTCGATTCAAAATT+GGG | - | chr1_1:56476785-56476804 | Msa0030320:intron | 25.0% |
| !!! | AAATTGTCGATTCAAAATTG+GGG | - | chr1_1:56476786-56476805 | Msa0030320:intron | 25.0% |
| !!! | AAGTAAGTCTTTTGTTGTTT+TGG | - | chr1_1:56476813-56476832 | Msa0030320:intron | 25.0% |
| !!! | AGTAAGTCTTTTGTTGTTTT+GGG | - | chr1_1:56476814-56476833 | Msa0030320:intron | 25.0% |
| !!! | ATTGTAGAATGTTTTGATGA+TGG | - | chr1_1:56476861-56476880 | Msa0030320:intron | 25.0% |
| ! | TTCATTCAATTCACTATTCT+CGG | + | chr1_1:56477098-56477117 | None:intergenic | 25.0% |
| ! | ATAGTGAATTGAATGAAGTT+TGG | - | chr1_1:56477101-56477120 | Msa0030320:CDS | 25.0% |
| ! | CATGAATTTGATAAACCTTA+CGG | - | chr1_1:56477291-56477310 | Msa0030320:CDS | 25.0% |
| ! | TATCATTTATTCATTCCGTA+AGG | + | chr1_1:56477309-56477328 | None:intergenic | 25.0% |
| !! | AATAAGTCTTGACTATTTTG+GGG | + | chr1_1:56477379-56477398 | None:intergenic | 25.0% |
| !! | GAAATAAGTCTTGACTATTT+TGG | + | chr1_1:56477381-56477400 | None:intergenic | 25.0% |
| !!! | ATTAGCCTTTATATGAAAGA+AGG | - | chr1_1:56478019-56478038 | Msa0030320:intron | 25.0% |
| !! | AATGCAATTACCAAATTTTG+GGG | + | chr1_1:56478348-56478367 | None:intergenic | 25.0% |
| !! | CAATGCAATTACCAAATTTT+GGG | + | chr1_1:56478349-56478368 | None:intergenic | 25.0% |
| !! | CAAAATTTGGTAATTGCATT+GGG | - | chr1_1:56478348-56478367 | Msa0030320:intron | 25.0% |
| !! | AAAATTTGGTAATTGCATTG+GGG | - | chr1_1:56478349-56478368 | Msa0030320:intron | 25.0% |
| !!! | GTTGTTAACATTTTATTTGG+CGG | - | chr1_1:56478551-56478570 | Msa0030320:five_prime_UTR | 25.0% |
| !!! | TTTTGTTTTTGTCCACTACT+AGG | - | chr1_1:56470479-56470498 | Msa0030320:three_prime_UTR | 30.0% |
| ATATTCACCCAACTCAATTA+TGG | - | chr1_1:56470692-56470711 | Msa0030320:CDS | 30.0% | |
| CATCAGCAATAGTTGAATAA+TGG | + | chr1_1:56470975-56470994 | None:intergenic | 30.0% | |
| ! | ACTATTGCTGATGATGAATT+AGG | - | chr1_1:56470982-56471001 | Msa0030320:intron | 30.0% |
| TGAATCAAGAGAAAAGACTA+CGG | - | chr1_1:56471167-56471186 | Msa0030320:intron | 30.0% | |
| ATATGTCATAGGAAACGATA+AGG | + | chr1_1:56471219-56471238 | None:intergenic | 30.0% | |
| GTACGAATGAACAATCAAAT+CGG | + | chr1_1:56471277-56471296 | None:intergenic | 30.0% | |
| TCTGAATTGGAATTAAAAGC+TGG | + | chr1_1:56471362-56471381 | None:intergenic | 30.0% | |
| ! | ATGTTCACTATGTTCTGAAT+TGG | + | chr1_1:56471375-56471394 | None:intergenic | 30.0% |
| GCACTGAATTCAAAGAAAAT+AGG | + | chr1_1:56471521-56471540 | None:intergenic | 30.0% | |
| AATATCATGAAAAGAAGGCA+AGG | + | chr1_1:56471869-56471888 | None:intergenic | 30.0% | |
| AATGAAGTGATTAACTTACG+TGG | + | chr1_1:56471950-56471969 | None:intergenic | 30.0% | |
| ! | TTGGATTAGAACTTGTCTAT+TGG | - | chr1_1:56471976-56471995 | Msa0030320:intron | 30.0% |
| ! | GAAATATTCCAGGTTCTTTT+TGG | - | chr1_1:56472038-56472057 | Msa0030320:CDS | 30.0% |
| ! | AATGCTTTTCCTTTTTGTCA+AGG | + | chr1_1:56472219-56472238 | None:intergenic | 30.0% |
| ACCGATCATATCATTATTTG+TGG | - | chr1_1:56472880-56472899 | Msa0030320:intron | 30.0% | |
| CCCACAAATAATGATATGAT+CGG | + | chr1_1:56472884-56472903 | None:intergenic | 30.0% | |
| CCGATCATATCATTATTTGT+GGG | - | chr1_1:56472881-56472900 | Msa0030320:intron | 30.0% | |
| AAACACAAGATGAAGGAAAT+TGG | + | chr1_1:56473015-56473034 | None:intergenic | 30.0% | |
| TTCCAAGAAAACAGATTGAT+AGG | - | chr1_1:56473106-56473125 | Msa0030320:intron | 30.0% | |
| ! | ATCCTATCAATCTGTTTTCT+TGG | + | chr1_1:56473111-56473130 | None:intergenic | 30.0% |
| ! | ATTTCCTTCTTTTGTCAAAC+CGG | - | chr1_1:56473198-56473217 | Msa0030320:intron | 30.0% |
| TGCCTCATAATTGAAATTTC+TGG | - | chr1_1:56473406-56473425 | Msa0030320:CDS | 30.0% | |
| ATAATTATACTGCCAGCAAA+AGG | - | chr1_1:56473494-56473513 | Msa0030320:intron | 30.0% | |
| TAATTATACTGCCAGCAAAA+GGG | - | chr1_1:56473495-56473514 | Msa0030320:intron | 30.0% | |
| TCAAGTGATTTCAGTTCAAA+CGG | + | chr1_1:56473574-56473593 | None:intergenic | 30.0% | |
| TCACTAACATCTAAGTCATA+GGG | - | chr1_1:56473670-56473689 | Msa0030320:CDS | 30.0% | |
| AGTTAATATGTAGGAGAATC+TGG | - | chr1_1:56473829-56473848 | Msa0030320:intron | 30.0% | |
| TAAATCCTGTCCCAATAATT+AGG | + | chr1_1:56473923-56473942 | None:intergenic | 30.0% | |
| AAGGACTTATAAAGATCTAC+AGG | - | chr1_1:56474549-56474568 | Msa0030320:intron | 30.0% | |
| ! | CTGAAGTAGATTGAGATTTT+TGG | - | chr1_1:56474791-56474810 | Msa0030320:intron | 30.0% |
| ATCTTGAAGGAATGACATAT+AGG | - | chr1_1:56474946-56474965 | Msa0030320:intron | 30.0% | |
| GCAGAATTTCATCATCATTT+GGG | + | chr1_1:56475129-56475148 | None:intergenic | 30.0% | |
| TGCAGAATTTCATCATCATT+TGG | + | chr1_1:56475130-56475149 | None:intergenic | 30.0% | |
| TGGCTTATTAGTATTCTGAA+GGG | + | chr1_1:56475273-56475292 | None:intergenic | 30.0% | |
| CACAAGTTATAACCACAAAT+GGG | - | chr1_1:56475291-56475310 | Msa0030320:intron | 30.0% | |
| TCTTACTTTACTCAATTCGA+TGG | + | chr1_1:56475372-56475391 | None:intergenic | 30.0% | |
| TGAATCATTTCTACAACATC+GGG | + | chr1_1:56475589-56475608 | None:intergenic | 30.0% | |
| TATACACTCACAAAAATGTG+TGG | + | chr1_1:56475681-56475700 | None:intergenic | 30.0% | |
| ! | GAAGACTGATTAAGGTTTTA+TGG | + | chr1_1:56475711-56475730 | None:intergenic | 30.0% |
| AACATAAGTATCTAAGTGGT+AGG | + | chr1_1:56475812-56475831 | None:intergenic | 30.0% | |
| CAGTAACATAAGTATCTAAG+TGG | + | chr1_1:56475816-56475835 | None:intergenic | 30.0% | |
| CACTTAGATACTTATGTTAC+TGG | - | chr1_1:56475814-56475833 | Msa0030320:CDS | 30.0% | |
| GATACTTATGTTACTGGTAT+AGG | - | chr1_1:56475820-56475839 | Msa0030320:CDS | 30.0% | |
| TTCTGACCATAATAATATGC+AGG | - | chr1_1:56475904-56475923 | Msa0030320:intron | 30.0% | |
| ATTATTAGGGAAAACATCGT+TGG | - | chr1_1:56475959-56475978 | Msa0030320:intron | 30.0% | |
| ! | ATATGATCTTGTGCTTCTTT+TGG | - | chr1_1:56476079-56476098 | Msa0030320:CDS | 30.0% |
| TATTCAGACTTCATTGAAGA+AGG | - | chr1_1:56476158-56476177 | Msa0030320:intron | 30.0% | |
| GATATGCAAGCAATTGAAAA+AGG | + | chr1_1:56476192-56476211 | None:intergenic | 30.0% | |
| GACAAGAAAAAATCTCAAGA+GGG | + | chr1_1:56476443-56476462 | None:intergenic | 30.0% | |
| ! | GAAAAGGGTCTTATAAAAAG+AGG | + | chr1_1:56476465-56476484 | None:intergenic | 30.0% |
| ! | TGACATAATTAGGAGTATGT+TGG | + | chr1_1:56476517-56476536 | None:intergenic | 30.0% |
| TACTCTTCATGAGAGAAAAT+TGG | + | chr1_1:56476588-56476607 | None:intergenic | 30.0% | |
| TCAACATTGTCCTATACTTA+AGG | - | chr1_1:56476676-56476695 | Msa0030320:intron | 30.0% | |
| !!! | GTAGAAGTTTTTAGTATGAC+TGG | - | chr1_1:56476704-56476723 | Msa0030320:intron | 30.0% |
| TAATCATCGTTGGATTGAAT+TGG | - | chr1_1:56476733-56476752 | Msa0030320:intron | 30.0% | |
| ! | TTAATCTTTTGTCCTCTTCT+CGG | - | chr1_1:56476988-56477007 | Msa0030320:intron | 30.0% |
| !!! | GCTTTAGCTTTTAATTGTTG+TGG | - | chr1_1:56477015-56477034 | Msa0030320:intron | 30.0% |
| TGATAAACGACAAATTAGTG+AGG | - | chr1_1:56477324-56477343 | Msa0030320:intron | 30.0% | |
| GATAAACGACAAATTAGTGA+GGG | - | chr1_1:56477325-56477344 | Msa0030320:intron | 30.0% | |
| TCTCTCCTTCTTTCATATAA+AGG | + | chr1_1:56478027-56478046 | None:intergenic | 30.0% | |
| ! | TTTCTGAGAGAGCATATTTA+AGG | - | chr1_1:56478065-56478084 | Msa0030320:intron | 30.0% |
| ! | TAATAACCTTTCCCATTTTC+AGG | - | chr1_1:56478189-56478208 | Msa0030320:intron | 30.0% |
| CAGCATAATTACAAAATGAC+CGG | + | chr1_1:56478301-56478320 | None:intergenic | 30.0% | |
| ! | ATGCAATTACCAAATTTTGG+GGG | + | chr1_1:56478347-56478366 | None:intergenic | 30.0% |
| ! | CCAATGCAATTACCAAATTT+TGG | + | chr1_1:56478350-56478369 | None:intergenic | 30.0% |
| ! | CCAAAATTTGGTAATTGCAT+TGG | - | chr1_1:56478347-56478366 | Msa0030320:intron | 30.0% |
| CACGAAATATTTGACTGACT+CGG | - | chr1_1:56470431-56470450 | Msa0030320:three_prime_UTR | 35.0% | |
| ACTTGTTCATCTTCAGTGTT+AGG | - | chr1_1:56470625-56470644 | Msa0030320:three_prime_UTR | 35.0% | |
| GATAGTACATAACATGTCAC+TGG | - | chr1_1:56470719-56470738 | Msa0030320:CDS | 35.0% | |
| ! | CAATGAAGAGCATATGTCAT+AGG | + | chr1_1:56471230-56471249 | None:intergenic | 35.0% |
| !! | AAATTGGTGCTCACATTTTC+TGG | + | chr1_1:56471401-56471420 | None:intergenic | 35.0% |
| ATGTGAGCACCAATTTCATT+TGG | - | chr1_1:56471405-56471424 | Msa0030320:intron | 35.0% | |
| TTCCTCTGTCCAAATGAAAT+TGG | + | chr1_1:56471417-56471436 | None:intergenic | 35.0% | |
| GGAAAATAATAGTAGCTCTC+AGG | - | chr1_1:56471433-56471452 | Msa0030320:intron | 35.0% | |
| AAGAAATGCGTGGAAAAGTT+TGG | - | chr1_1:56471457-56471476 | Msa0030320:intron | 35.0% | |
| ACGTCTAATTTAAGTGGCTT+GGG | + | chr1_1:56471844-56471863 | None:intergenic | 35.0% | |
| AAGGTGACGTCTAATTTAAG+TGG | + | chr1_1:56471850-56471869 | None:intergenic | 35.0% | |
| ! | CTTGTTGTGTGAAATATTCC+AGG | - | chr1_1:56472028-56472047 | Msa0030320:CDS | 35.0% |
| !! | TGCATCTCGTTTGTTTTCAT+TGG | - | chr1_1:56472075-56472094 | Msa0030320:intron | 35.0% |
| !! | ATCTCGTTTGTTTTCATTGG+AGG | - | chr1_1:56472078-56472097 | Msa0030320:intron | 35.0% |
| GTTTCTTGTTCTTCAAGCTA+AGG | - | chr1_1:56472100-56472119 | Msa0030320:intron | 35.0% | |
| AAAGTATGTGTGAATCCTTG+TGG | - | chr1_1:56472277-56472296 | Msa0030320:intron | 35.0% | |
| ! | AATCAAATTTTAAGCTGCCG+AGG | + | chr1_1:56472394-56472413 | None:intergenic | 35.0% |
| GGGCCATTATTAAATTATCC+AGG | - | chr1_1:56472449-56472468 | Msa0030320:intron | 35.0% | |
| ! | AATCGCTGGAAGAATGTTTT+TGG | - | chr1_1:56472482-56472501 | Msa0030320:intron | 35.0% |
| ! | ATCGCTGGAAGAATGTTTTT+GGG | - | chr1_1:56472483-56472502 | Msa0030320:intron | 35.0% |
| !!! | AAGAATGTTTTTGGGAAGCA+TGG | - | chr1_1:56472491-56472510 | Msa0030320:intron | 35.0% |
| !!! | AGAATGTTTTTGGGAAGCAT+GGG | - | chr1_1:56472492-56472511 | Msa0030320:intron | 35.0% |
| ! | CCAACAAAATGTGTGTCATT+TGG | + | chr1_1:56472632-56472651 | None:intergenic | 35.0% |
| ! | CCAAATGACACACATTTTGT+TGG | - | chr1_1:56472629-56472648 | Msa0030320:intron | 35.0% |
| !! | TTGGCTTTGTTCTTGCAATA+TGG | - | chr1_1:56472684-56472703 | Msa0030320:intron | 35.0% |
| !! | TGGCTTTGTTCTTGCAATAT+GGG | - | chr1_1:56472685-56472704 | Msa0030320:intron | 35.0% |
| TACCATGACTGAGCAATTTA+GGG | - | chr1_1:56472736-56472755 | Msa0030320:intron | 35.0% | |
| GCAATCAAAACACAAGATGA+AGG | + | chr1_1:56473022-56473041 | None:intergenic | 35.0% | |
| !!! | TCATCTTGTGTTTTGATTGC+TGG | - | chr1_1:56473022-56473041 | Msa0030320:CDS | 35.0% |
| ! | ATGTCGTTTCATTTCTATGC+AGG | - | chr1_1:56473055-56473074 | Msa0030320:intron | 35.0% |
| TTGGAAGATCAGACATAAGA+AGG | + | chr1_1:56473092-56473111 | None:intergenic | 35.0% | |
| ATATTGATCTCCTTAGCAAG+AGG | - | chr1_1:56473160-56473179 | Msa0030320:intron | 35.0% | |
| TTAAGATTGCTCAGTGCATT+GGG | - | chr1_1:56473252-56473271 | Msa0030320:intron | 35.0% | |
| AATTATACTGCCAGCAAAAG+GGG | - | chr1_1:56473496-56473515 | Msa0030320:intron | 35.0% | |
| GTCACTAACATCTAAGTCAT+AGG | - | chr1_1:56473669-56473688 | Msa0030320:CDS | 35.0% | |
| CACTAACATCTAAGTCATAG+GGG | - | chr1_1:56473671-56473690 | Msa0030320:CDS | 35.0% | |
| ! | AGTGTCTGCTTAAGTTGTTA+TGG | - | chr1_1:56473718-56473737 | Msa0030320:CDS | 35.0% |
| TTAGTCCTAATTATTGGGAC+AGG | - | chr1_1:56473915-56473934 | Msa0030320:intron | 35.0% | |
| AGTAATAGAAGCTAAGGTCT+AGG | + | chr1_1:56473971-56473990 | None:intergenic | 35.0% | |
| ATATTAGCAGTGAAGTCACT+AGG | + | chr1_1:56474055-56474074 | None:intergenic | 35.0% | |
| AAAACAACTCGAGCTATCTA+TGG | + | chr1_1:56474158-56474177 | None:intergenic | 35.0% | |
| ! | CATATCTGGAATTGGTTGAA+GGG | + | chr1_1:56474301-56474320 | None:intergenic | 35.0% |
| CTTCAACCAATTCCAGATAT+GGG | - | chr1_1:56474300-56474319 | Msa0030320:intron | 35.0% | |
| CTTCAACAAGTCACATGTTT+GGG | + | chr1_1:56474456-56474475 | None:intergenic | 35.0% | |
| ACTTCAACAAGTCACATGTT+TGG | + | chr1_1:56474457-56474476 | None:intergenic | 35.0% | |
| !! | TGACTTGTTGAAGTCAATCT+CGG | - | chr1_1:56474463-56474482 | Msa0030320:CDS | 35.0% |
| ! | TGTGTCGTGTTTCTAAAGAT+TGG | - | chr1_1:56474607-56474626 | Msa0030320:intron | 35.0% |
| TATGTCATTCCTTCAAGATC+AGG | + | chr1_1:56474945-56474964 | None:intergenic | 35.0% | |
| TTATTTCAGGCTGTTGTATG+TGG | - | chr1_1:56475073-56475092 | Msa0030320:intron | 35.0% | |
| !! | GGAAGTATATTTTCCCATTC+CGG | + | chr1_1:56475105-56475124 | None:intergenic | 35.0% |
| GAATTTCATCATCATTTGGG+TGG | + | chr1_1:56475126-56475145 | None:intergenic | 35.0% | |
| GTGGCTTATTAGTATTCTGA+AGG | + | chr1_1:56475274-56475293 | None:intergenic | 35.0% | |
| CCATTTGTGGTTATAACTTG+TGG | + | chr1_1:56475293-56475312 | None:intergenic | 35.0% | |
| CCACAAGTTATAACCACAAA+TGG | - | chr1_1:56475290-56475309 | Msa0030320:intron | 35.0% | |
| ATAACCACAAATGGGAAAGA+AGG | - | chr1_1:56475299-56475318 | Msa0030320:intron | 35.0% | |
| ! | TTTTCCTTCTTTCCCATTTG+TGG | + | chr1_1:56475306-56475325 | None:intergenic | 35.0% |
| AATGGGAAAGAAGGAAAAGA+TGG | - | chr1_1:56475308-56475327 | Msa0030320:intron | 35.0% | |
| ! | AATGCATTCTTTTACTTGGG+TGG | - | chr1_1:56475560-56475579 | Msa0030320:intron | 35.0% |
| ! | CAAGAGTATGAGAACTATCT+CGG | - | chr1_1:56475607-56475626 | Msa0030320:intron | 35.0% |
| AAACATACCAAAACACTTCC+AGG | + | chr1_1:56475634-56475653 | None:intergenic | 35.0% | |
| ! | GTGGTAGGATATTGCATTTT+CGG | + | chr1_1:56475797-56475816 | None:intergenic | 35.0% |
| CAATGTCATGTATCTTCTGA+TGG | + | chr1_1:56475863-56475882 | None:intergenic | 35.0% | |
| CATCAGAAGATACATGACAT+TGG | - | chr1_1:56475861-56475880 | Msa0030320:CDS | 35.0% | |
| ! | AGAATGTTCGAGTTTCTCAT+AGG | - | chr1_1:56475996-56476015 | Msa0030320:intron | 35.0% |
| ! | GAATGTTCGAGTTTCTCATA+GGG | - | chr1_1:56475997-56476016 | Msa0030320:intron | 35.0% |
| CTTGCATATCTGACAAAGAT+TGG | - | chr1_1:56476202-56476221 | Msa0030320:intron | 35.0% | |
| TCTGCAAAAACAAAAGTCAG+TGG | + | chr1_1:56476276-56476295 | None:intergenic | 35.0% | |
| GAAAATATCTGCGACAAACT+TGG | - | chr1_1:56476342-56476361 | Msa0030320:intron | 35.0% | |
| GGACAAGAAAAAATCTCAAG+AGG | + | chr1_1:56476444-56476463 | None:intergenic | 35.0% | |
| ! | GACAATGTTGACTAAATCAG+AGG | + | chr1_1:56476667-56476686 | None:intergenic | 35.0% |
| CATTGTCCTATACTTAAGGA+CGG | - | chr1_1:56476680-56476699 | Msa0030320:intron | 35.0% | |
| !!! | AGTTTTTAGTATGACTGGAG+AGG | - | chr1_1:56476709-56476728 | Msa0030320:intron | 35.0% |
| GATTGAATTGGCTGTTATGT+AGG | - | chr1_1:56476745-56476764 | Msa0030320:intron | 35.0% | |
| AAAGACATACTAGATGCAGA+GGG | - | chr1_1:56477124-56477143 | Msa0030320:CDS | 35.0% | |
| GGGTGATGAAATATATGTGA+AGG | - | chr1_1:56477144-56477163 | Msa0030320:CDS | 35.0% | |
| ATCTACTCATGTTGTGATTG+TGG | - | chr1_1:56477171-56477190 | Msa0030320:CDS | 35.0% | |
| GTATGTAATCATTACGACTG+TGG | - | chr1_1:56477208-56477227 | Msa0030320:CDS | 35.0% | |
| GCTAGGAAACATTCAAATAG+AGG | + | chr1_1:56477258-56477277 | None:intergenic | 35.0% | |
| TCAACTAGCAAGTGTATGTT+TGG | - | chr1_1:56477405-56477424 | Msa0030320:intron | 35.0% | |
| ! | TGTATGTTTGGAACTTACTG+TGG | - | chr1_1:56477417-56477436 | Msa0030320:intron | 35.0% |
| ! | TACTGTGGCGAACATAATTT+TGG | - | chr1_1:56477432-56477451 | Msa0030320:intron | 35.0% |
| ! | ACTGTGGCGAACATAATTTT+GGG | - | chr1_1:56477433-56477452 | Msa0030320:intron | 35.0% |
| ATCATTATTCCTTCTAGGCT+TGG | + | chr1_1:56477476-56477495 | None:intergenic | 35.0% | |
| GGATCATCATTATTCCTTCT+AGG | + | chr1_1:56477481-56477500 | None:intergenic | 35.0% | |
| ! | GTTTGAAGCAAAGCTGTAAA+AGG | + | chr1_1:56477502-56477521 | None:intergenic | 35.0% |
| TTCACATGGTTTACCAAACA+TGG | - | chr1_1:56477536-56477555 | Msa0030320:intron | 35.0% | |
| TTGCTCGTGATACACTAATT+TGG | - | chr1_1:56477612-56477631 | Msa0030320:CDS | 35.0% | |
| ACTAGAACATGATTCAGTTG+AGG | - | chr1_1:56477711-56477730 | Msa0030320:intron | 35.0% | |
| TACAATGCATACTTAATCCC+CGG | + | chr1_1:56477945-56477964 | None:intergenic | 35.0% | |
| GTTCTTCTTCACATAACCTA+TGG | + | chr1_1:56478101-56478120 | None:intergenic | 35.0% | |
| TGATTACCTGAAAATGGGAA+AGG | + | chr1_1:56478198-56478217 | None:intergenic | 35.0% | |
| !! | TGGGTTGATTACCTGAAAAT+GGG | + | chr1_1:56478203-56478222 | None:intergenic | 35.0% |
| !! | TTGGGTTGATTACCTGAAAA+TGG | + | chr1_1:56478204-56478223 | None:intergenic | 35.0% |
| ! | ATTGATAGTCATATCTGAGC+TGG | - | chr1_1:56478264-56478283 | Msa0030320:intron | 35.0% |
| AAATTCTGACCCCCAAAATT+TGG | - | chr1_1:56478335-56478354 | Msa0030320:intron | 35.0% | |
| ACACCAACAACAAGAATTCC+AGG | - | chr1_1:56470601-56470620 | Msa0030320:three_prime_UTR | 40.0% | |
| ! | GTACCTGGAATTCTTGTTGT+TGG | + | chr1_1:56470607-56470626 | None:intergenic | 40.0% |
| ACTGAAGATGAACAAGTACC+TGG | + | chr1_1:56470622-56470641 | None:intergenic | 40.0% | |
| CCATGACTCGTGAAATTACA+AGG | + | chr1_1:56470755-56470774 | None:intergenic | 40.0% | |
| CCTTGTAATTTCACGAGTCA+TGG | - | chr1_1:56470752-56470771 | Msa0030320:CDS | 40.0% | |
| !!! | GATGGCAGGTTGATTTTCAA+AGG | - | chr1_1:56471336-56471355 | Msa0030320:intron | 40.0% |
| CACCAATTTCATTTGGACAG+AGG | - | chr1_1:56471412-56471431 | Msa0030320:intron | 40.0% | |
| CTGACACACACAAAGTTTGT+TGG | - | chr1_1:56471718-56471737 | Msa0030320:intron | 40.0% | |
| GCACATATCGAACTATTGCT+TGG | + | chr1_1:56471762-56471781 | None:intergenic | 40.0% | |
| GACGTCTAATTTAAGTGGCT+TGG | + | chr1_1:56471845-56471864 | None:intergenic | 40.0% | |
| ATATTAGATGGAGCTTAGCG+CGG | - | chr1_1:56471884-56471903 | Msa0030320:intron | 40.0% | |
| CAAACGAGATGCATGCTATA+AGG | + | chr1_1:56472068-56472087 | None:intergenic | 40.0% | |
| ! | TCCTTTTTGTCAAGGCTTCT+GGG | + | chr1_1:56472211-56472230 | None:intergenic | 40.0% |
| ! | TTCCTTTTTGTCAAGGCTTC+TGG | + | chr1_1:56472212-56472231 | None:intergenic | 40.0% |
| CAGTGTGTAATTAAGCCACA+AGG | + | chr1_1:56472295-56472314 | None:intergenic | 40.0% | |
| CTAACAACCCAATTAGACCT+CGG | - | chr1_1:56472374-56472393 | Msa0030320:intron | 40.0% | |
| CAGCGATTGTTTATTGTTCC+TGG | + | chr1_1:56472470-56472489 | None:intergenic | 40.0% | |
| CAGGAACAATAAACAATCGC+TGG | - | chr1_1:56472468-56472487 | Msa0030320:intron | 40.0% | |
| ATAACACGCTCAATACGTGT+TGG | + | chr1_1:56472665-56472684 | None:intergenic | 40.0% | |
| ACACGTATTGAGCGTGTTAT+TGG | - | chr1_1:56472665-56472684 | Msa0030320:intron | 40.0% | |
| !! | GGCTTTGTTCTTGCAATATG+GGG | - | chr1_1:56472686-56472705 | Msa0030320:intron | 40.0% |
| GTACCATGACTGAGCAATTT+AGG | - | chr1_1:56472735-56472754 | Msa0030320:intron | 40.0% | |
| TACCCTAAATTGCTCAGTCA+TGG | + | chr1_1:56472741-56472760 | None:intergenic | 40.0% | |
| CGCAACAGAGTAATATGCAA+AGG | - | chr1_1:56472824-56472843 | Msa0030320:CDS | 40.0% | |
| AGAGTAATATGCAAAGGCTC+AGG | - | chr1_1:56472830-56472849 | Msa0030320:CDS | 40.0% | |
| GAGTAATATGCAAAGGCTCA+GGG | - | chr1_1:56472831-56472850 | Msa0030320:CDS | 40.0% | |
| !! | AAAGCCGGTTTGACAAAAGA+AGG | + | chr1_1:56473205-56473224 | None:intergenic | 40.0% |
| CTTAAGATTGCTCAGTGCAT+TGG | - | chr1_1:56473251-56473270 | Msa0030320:intron | 40.0% | |
| !!! | TGGAGATTTTAGAATTGGGG+TGG | - | chr1_1:56473738-56473757 | Msa0030320:intron | 40.0% |
| !!! | GGAGATTTTAGAATTGGGGT+GGG | - | chr1_1:56473739-56473758 | Msa0030320:intron | 40.0% |
| !!! | GAGATTTTAGAATTGGGGTG+GGG | - | chr1_1:56473740-56473759 | Msa0030320:intron | 40.0% |
| !!! | AGATTTTAGAATTGGGGTGG+GGG | - | chr1_1:56473741-56473760 | Msa0030320:intron | 40.0% |
| !! | AGCTCTAGGTTATTCGATCT+AGG | - | chr1_1:56474015-56474034 | Msa0030320:CDS | 40.0% |
| ! | GCTCTAGGTTATTCGATCTA+GGG | - | chr1_1:56474016-56474035 | Msa0030320:CDS | 40.0% |
| TTTACTTGCCTCGTAGTGTT+CGG | - | chr1_1:56474126-56474145 | Msa0030320:intron | 40.0% | |
| ! | CCATATCTGGAATTGGTTGA+AGG | + | chr1_1:56474302-56474321 | None:intergenic | 40.0% |
| CCTTCAACCAATTCCAGATA+TGG | - | chr1_1:56474299-56474318 | Msa0030320:intron | 40.0% | |
| ! | ACAGAACCCATATCTGGAAT+TGG | + | chr1_1:56474309-56474328 | None:intergenic | 40.0% |
| TTCTGTCTCCACAATAGTTG+AGG | - | chr1_1:56474323-56474342 | Msa0030320:intron | 40.0% | |
| CCAACAAACCTCAACTATTG+TGG | + | chr1_1:56474334-56474353 | None:intergenic | 40.0% | |
| CCACAATAGTTGAGGTTTGT+TGG | - | chr1_1:56474331-56474350 | Msa0030320:intron | 40.0% | |
| !! | GACTTGTTGAAGTCAATCTC+GGG | - | chr1_1:56474464-56474483 | Msa0030320:CDS | 40.0% |
| ! | ACTTGTTGAAGTCAATCTCG+GGG | - | chr1_1:56474465-56474484 | Msa0030320:CDS | 40.0% |
| TTGGATGCAACATCTTCTAC+TGG | + | chr1_1:56474503-56474522 | None:intergenic | 40.0% | |
| TTTCGATTTCTCGGATGAGT+TGG | - | chr1_1:56474761-56474780 | Msa0030320:intron | 40.0% | |
| TGCCCTACACATATCTATTC+CGG | - | chr1_1:56474861-56474880 | Msa0030320:intron | 40.0% | |
| CACCGGAATAGATATGTGTA+GGG | + | chr1_1:56474866-56474885 | None:intergenic | 40.0% | |
| ACACCGGAATAGATATGTGT+AGG | + | chr1_1:56474867-56474886 | None:intergenic | 40.0% | |
| CTGTTGTATGTGGTCTTTAC+CGG | - | chr1_1:56475083-56475102 | Msa0030320:intron | 40.0% | |
| TATGTGGTCTTTACCGGAAT+GGG | - | chr1_1:56475089-56475108 | Msa0030320:intron | 40.0% | |
| CCAATGAACAATACCTAACG+AGG | + | chr1_1:56475248-56475267 | None:intergenic | 40.0% | |
| ! | CCTCGTTAGGTATTGTTCAT+TGG | - | chr1_1:56475245-56475264 | Msa0030320:intron | 40.0% |
| ACCTTAATCAGTCTTCCTCT+TGG | - | chr1_1:56475715-56475734 | Msa0030320:intron | 40.0% | |
| ACCAAGAGGAAGACTGATTA+AGG | + | chr1_1:56475719-56475738 | None:intergenic | 40.0% | |
| !! | TTATTGTTTTGCGGACCAAG+AGG | + | chr1_1:56475733-56475752 | None:intergenic | 40.0% |
| ACTATAGATTGGAAACCCCA+TGG | - | chr1_1:56476104-56476123 | Msa0030320:CDS | 40.0% | |
| !! | TCTGACAAAGATTGGCTTCT+TGG | - | chr1_1:56476210-56476229 | Msa0030320:intron | 40.0% |
| AGCAGATAGCTTATCTGTCT+TGG | + | chr1_1:56476304-56476323 | None:intergenic | 40.0% | |
| ! | CGCAGATATTTTCTGCAAGT+AGG | + | chr1_1:56476335-56476354 | None:intergenic | 40.0% |
| TCTACTCCGTCCTTAAGTAT+AGG | + | chr1_1:56476689-56476708 | None:intergenic | 40.0% | |
| AATGACCTTGAGCAGTTACA+AGG | + | chr1_1:56476970-56476989 | None:intergenic | 40.0% | |
| GAAAGACATACTAGATGCAG+AGG | - | chr1_1:56477123-56477142 | Msa0030320:CDS | 40.0% | |
| CATGCACGAAATTTCATGCT+AGG | + | chr1_1:56477275-56477294 | None:intergenic | 40.0% | |
| ! | GGTTTACCAAACATGGACTA+AGG | - | chr1_1:56477543-56477562 | Msa0030320:CDS | 40.0% |
| ATCACGAGCAAAGCTAACAA+TGG | + | chr1_1:56477603-56477622 | None:intergenic | 40.0% | |
| TCGTGATACACTAATTTGGC+AGG | - | chr1_1:56477616-56477635 | Msa0030320:CDS | 40.0% | |
| ATACACTAATTTGGCAGGCA+TGG | - | chr1_1:56477621-56477640 | Msa0030320:CDS | 40.0% | |
| TACACTAATTTGGCAGGCAT+GGG | - | chr1_1:56477622-56477641 | Msa0030320:CDS | 40.0% | |
| TTGTAACCCTCTGATTTCCA+GGG | + | chr1_1:56477818-56477837 | None:intergenic | 40.0% | |
| CATCATAACAAACGACCAAC+CGG | - | chr1_1:56477923-56477942 | Msa0030320:intron | 40.0% | |
| ATCATAACAAACGACCAACC+GGG | - | chr1_1:56477924-56477943 | Msa0030320:intron | 40.0% | |
| TCAGAAAGCTCGGAAAATGA+TGG | + | chr1_1:56478052-56478071 | None:intergenic | 40.0% | |
| ATATGCTCTCTCAGAAAGCT+CGG | + | chr1_1:56478062-56478081 | None:intergenic | 40.0% | |
| TTAAGGAGAGAAGTAGCCAT+AGG | - | chr1_1:56478082-56478101 | Msa0030320:intron | 40.0% | |
| !! | GGGGTTCTGACTTTGAAATT+GGG | + | chr1_1:56478222-56478241 | None:intergenic | 40.0% |
| !! | AGGGGTTCTGACTTTGAAAT+TGG | + | chr1_1:56478223-56478242 | None:intergenic | 40.0% |
| TCAGTCAATTCAAGAGAGAG+GGG | + | chr1_1:56478241-56478260 | None:intergenic | 40.0% | |
| GTCAGTCAATTCAAGAGAGA+GGG | + | chr1_1:56478242-56478261 | None:intergenic | 40.0% | |
| AGTCAGTCAATTCAAGAGAG+AGG | + | chr1_1:56478243-56478262 | None:intergenic | 40.0% | |
| ATAGTCATATCTGAGCTGGA+AGG | - | chr1_1:56478268-56478287 | Msa0030320:intron | 40.0% | |
| AAGTGAGTGAGATTCATGGC+TGG | + | chr1_1:56470522-56470541 | None:intergenic | 45.0% | |
| GTGGAAGTGAGTGAGATTCA+TGG | + | chr1_1:56470526-56470545 | None:intergenic | 45.0% | |
| TATGTGTGCCTTGGAATCCA+TGG | + | chr1_1:56470564-56470583 | None:intergenic | 45.0% | |
| GATTGCTTGTGATGCTTCAC+AGG | - | chr1_1:56471052-56471071 | Msa0030320:intron | 45.0% | |
| CTTCACCTTCTCCATTACAC+AGG | - | chr1_1:56471109-56471128 | Msa0030320:intron | 45.0% | |
| ATGTAAACCCTGTAGGGAGA+TGG | - | chr1_1:56471318-56471337 | Msa0030320:intron | 45.0% | |
| GAAATGCCGCATATGCTACA+GGG | - | chr1_1:56471643-56471662 | Msa0030320:intron | 45.0% | |
| TATGTGCCTCAGACTCTTGA+CGG | - | chr1_1:56471775-56471794 | Msa0030320:intron | 45.0% | |
| ! | AAGTGGCTTGGGTGTATTCA+AGG | + | chr1_1:56471833-56471852 | None:intergenic | 45.0% |
| !! | AAGGAGCACCAAAAAGAACC+TGG | + | chr1_1:56472049-56472068 | None:intergenic | 45.0% |
| ! | CCTTTTTGTCAAGGCTTCTG+GGG | + | chr1_1:56472210-56472229 | None:intergenic | 45.0% |
| TAAGCTGCCGAGGTCTAATT+GGG | + | chr1_1:56472384-56472403 | None:intergenic | 45.0% | |
| TTAAGCTGCCGAGGTCTAAT+TGG | + | chr1_1:56472385-56472404 | None:intergenic | 45.0% | |
| TAATATGCAAAGGCTCAGGG+AGG | - | chr1_1:56472834-56472853 | Msa0030320:CDS | 45.0% | |
| AATATGCAAAGGCTCAGGGA+GGG | - | chr1_1:56472835-56472854 | Msa0030320:CDS | 45.0% | |
| !!! | GATTTTAGAATTGGGGTGGG+GGG | - | chr1_1:56473742-56473761 | Msa0030320:intron | 45.0% |
| !!! | ATTTTAGAATTGGGGTGGGG+GGG | - | chr1_1:56473743-56473762 | Msa0030320:intron | 45.0% |
| TATATCGTGTCAGCAGCTCT+AGG | - | chr1_1:56474001-56474020 | Msa0030320:CDS | 45.0% | |
| GCAAGTAAACAGTCGATGGA+TGG | + | chr1_1:56474115-56474134 | None:intergenic | 45.0% | |
| GGAATTAACCGAACACTACG+AGG | + | chr1_1:56474137-56474156 | None:intergenic | 45.0% | |
| !! | TGGTACCGGTTTCGATTTCT+CGG | - | chr1_1:56474752-56474771 | Msa0030320:intron | 45.0% |
| CTCATCCGAGAAATCGAAAC+CGG | + | chr1_1:56474760-56474779 | None:intergenic | 45.0% | |
| GTATGTGGTCTTTACCGGAA+TGG | - | chr1_1:56475088-56475107 | Msa0030320:intron | 45.0% | |
| CAGAACAGCAAGTCATACCT+TGG | + | chr1_1:56475432-56475451 | None:intergenic | 45.0% | |
| ATCACCATTTAGGCAGCAGA+CGG | - | chr1_1:56475520-56475539 | Msa0030320:CDS | 45.0% | |
| TATGAGAACTATCTCGGTCC+TGG | - | chr1_1:56475613-56475632 | Msa0030320:intron | 45.0% | |
| CAGAGACGCCATTAAATGAC+AGG | - | chr1_1:56475936-56475955 | Msa0030320:intron | 45.0% | |
| ! | ATTGGAAACCCCATGGACTA+CGG | - | chr1_1:56476111-56476130 | Msa0030320:CDS | 45.0% |
| !! | TTTAAGGTGCCGTAGTCCAT+GGG | + | chr1_1:56476123-56476142 | None:intergenic | 45.0% |
| !! | GACAAAGATTGGCTTCTTGG+AGG | - | chr1_1:56476213-56476232 | Msa0030320:intron | 45.0% |
| CTGGAGAGGATAATCATCGT+TGG | - | chr1_1:56476723-56476742 | Msa0030320:intron | 45.0% | |
| ! | TTGAGCCTTGTAACTGCTCA+AGG | - | chr1_1:56476962-56476981 | Msa0030320:intron | 45.0% |
| AAACGTTCGCTTGCTTCACA+TGG | - | chr1_1:56477522-56477541 | Msa0030320:intron | 45.0% | |
| CACACTCCTTAGTCCATGTT+TGG | + | chr1_1:56477552-56477571 | None:intergenic | 45.0% | |
| TGAGGATGAATCGTTCTGAC+TGG | - | chr1_1:56477729-56477748 | Msa0030320:intron | 45.0% | |
| TGGTAATCCGGAGTTCAACT+GGG | + | chr1_1:56477784-56477803 | None:intergenic | 45.0% | |
| ! | GGAAATGGACTCTGGTAATC+CGG | + | chr1_1:56477796-56477815 | None:intergenic | 45.0% |
| CATTTCCCCTGGAAATCAGA+GGG | - | chr1_1:56477809-56477828 | Msa0030320:intron | 45.0% | |
| TGTAACCCTCTGATTTCCAG+GGG | + | chr1_1:56477817-56477836 | None:intergenic | 45.0% | |
| GTTGTAACCCTCTGATTTCC+AGG | + | chr1_1:56477819-56477838 | None:intergenic | 45.0% | |
| !! | CGGTTGGTCGTTTGTTATGA+TGG | + | chr1_1:56477925-56477944 | None:intergenic | 45.0% |
| TCATAACAAACGACCAACCG+GGG | - | chr1_1:56477925-56477944 | Msa0030320:intron | 45.0% | |
| ATGCATACTTAATCCCCGGT+TGG | + | chr1_1:56477941-56477960 | None:intergenic | 45.0% | |
| GCAGCATTGCAGTTAACTCA+AGG | - | chr1_1:56477971-56477990 | Msa0030320:intron | 45.0% | |
| TCTCACTCTGCTCCTAGTAG+TGG | + | chr1_1:56470494-56470513 | None:intergenic | 50.0% | |
| ! | ATGGAAGACAGGAGTGCATG+TGG | + | chr1_1:56470545-56470564 | None:intergenic | 50.0% |
| ACATGCACTCCTGTCTTCCA+TGG | - | chr1_1:56470544-56470563 | Msa0030320:three_prime_UTR | 50.0% | |
| CCTTGGAATCCATGGAAGAC+AGG | + | chr1_1:56470556-56470575 | None:intergenic | 50.0% | |
| CCTGTCTTCCATGGATTCCA+AGG | - | chr1_1:56470553-56470572 | Msa0030320:three_prime_UTR | 50.0% | |
| GATGAGCAGTATGTGTGCCT+TGG | + | chr1_1:56470573-56470592 | None:intergenic | 50.0% | |
| TGCTTGTGATGCTTCACAGG+AGG | - | chr1_1:56471055-56471074 | Msa0030320:intron | 50.0% | |
| GCTTGTGATGCTTCACAGGA+GGG | - | chr1_1:56471056-56471075 | Msa0030320:intron | 50.0% | |
| TTGTGCCCTGTCATATCAGC+TGG | - | chr1_1:56471079-56471098 | Msa0030320:intron | 50.0% | |
| CTGAGCCAGCTGATATGACA+GGG | + | chr1_1:56471087-56471106 | None:intergenic | 50.0% | |
| CGAATACCACGCCTGTGTAA+TGG | + | chr1_1:56471123-56471142 | None:intergenic | 50.0% | |
| GGTATTCGACCACACACTGA+AGG | - | chr1_1:56471135-56471154 | Msa0030320:intron | 50.0% | |
| TGCAACTCACCTTCAGTGTG+TGG | + | chr1_1:56471147-56471166 | None:intergenic | 50.0% | |
| GCTCTCAGGTAAGAAATGCG+TGG | - | chr1_1:56471447-56471466 | Msa0030320:intron | 50.0% | |
| CGAAATGCCGCATATGCTAC+AGG | - | chr1_1:56471642-56471661 | Msa0030320:intron | 50.0% | |
| TGTCGACCCTGTAGCATATG+CGG | + | chr1_1:56471652-56471671 | None:intergenic | 50.0% | |
| CTTGTTCCGTCAAGAGTCTG+AGG | + | chr1_1:56471784-56471803 | None:intergenic | 50.0% | |
| GACTCTTGACGGAACAAGCT+TGG | - | chr1_1:56471786-56471805 | Msa0030320:intron | 50.0% | |
| CCCCAGAAGCCTTGACAAAA+AGG | - | chr1_1:56472207-56472226 | Msa0030320:CDS | 50.0% | |
| !! | CAATACGTGTTGGTTGCTGC+AGG | + | chr1_1:56472655-56472674 | None:intergenic | 50.0% |
| ! | GGGAGCACAAATGCAAGTCA+TGG | - | chr1_1:56472855-56472874 | Msa0030320:CDS | 50.0% |
| !! | AGCGTCGATACCTCTTGCTA+AGG | + | chr1_1:56473173-56473192 | None:intergenic | 50.0% |
| !! | TTAGCAAGAGGTATCGACGC+TGG | - | chr1_1:56473172-56473191 | Msa0030320:intron | 50.0% |
| !! | TAGCAAGAGGTATCGACGCT+GGG | - | chr1_1:56473173-56473192 | Msa0030320:intron | 50.0% |
| TACTGCCAGCAAAAGGGGAT+CGG | - | chr1_1:56473501-56473520 | Msa0030320:intron | 50.0% | |
| ! | ACTTACCGATCCCCTTTTGC+TGG | + | chr1_1:56473509-56473528 | None:intergenic | 50.0% |
| !!! | TTTTAGAATTGGGGTGGGGG+GGG | - | chr1_1:56473744-56473763 | Msa0030320:intron | 50.0% |
| GCAGTGAAGTCACTAGGAGA+GGG | + | chr1_1:56474049-56474068 | None:intergenic | 50.0% | |
| AGCAGTGAAGTCACTAGGAG+AGG | + | chr1_1:56474050-56474069 | None:intergenic | 50.0% | |
| CGAGGCAAGTAAACAGTCGA+TGG | + | chr1_1:56474119-56474138 | None:intergenic | 50.0% | |
| GTGGAGACAGAACCCATATC+TGG | + | chr1_1:56474315-56474334 | None:intergenic | 50.0% | |
| GTTCAATGCTCTCGGCAGAA+AGG | - | chr1_1:56474530-56474549 | Msa0030320:CDS | 50.0% | |
| TGCAGCTTGCCTGATCTTGA+AGG | - | chr1_1:56474933-56474952 | Msa0030320:intron | 50.0% | |
| TCACCATTTAGGCAGCAGAC+GGG | - | chr1_1:56475521-56475540 | Msa0030320:CDS | 50.0% | |
| ATTCCCGTCTGCTGCCTAAA+TGG | + | chr1_1:56475527-56475546 | None:intergenic | 50.0% | |
| !!! | TCTCGGTCCTGGAAGTGTTT+TGG | - | chr1_1:56475624-56475643 | Msa0030320:intron | 50.0% |
| !! | TTAAGGTGCCGTAGTCCATG+GGG | + | chr1_1:56476122-56476141 | None:intergenic | 50.0% |
| !! | CTTTAAGGTGCCGTAGTCCA+TGG | + | chr1_1:56476124-56476143 | None:intergenic | 50.0% |
| ! | CATGGACTACGGCACCTTAA+AGG | - | chr1_1:56476122-56476141 | Msa0030320:CDS | 50.0% |
| CTGCGACAAACTTGGAGTCA+AGG | - | chr1_1:56476350-56476369 | Msa0030320:intron | 50.0% | |
| GCCATCAGTGACCTATGTTG+CGG | - | chr1_1:56476928-56476947 | Msa0030320:intron | 50.0% | |
| ATCAGTGACCTATGTTGCGG+CGG | - | chr1_1:56476931-56476950 | Msa0030320:intron | 50.0% | |
| TATTTCCTCCGCCGCAACAT+AGG | + | chr1_1:56476942-56476961 | None:intergenic | 50.0% | |
| GCTAAAGCTCAACCGAGAAG+AGG | + | chr1_1:56477003-56477022 | None:intergenic | 50.0% | |
| TGCAAAGCTCCAAGCCTAGA+AGG | - | chr1_1:56477464-56477483 | Msa0030320:intron | 50.0% | |
| CTTACCTCCCAGTTGAACTC+CGG | - | chr1_1:56477774-56477793 | Msa0030320:intron | 50.0% | |
| TAATCCGGAGTTCAACTGGG+AGG | + | chr1_1:56477781-56477800 | None:intergenic | 50.0% | |
| CTGGTAATCCGGAGTTCAAC+TGG | + | chr1_1:56477785-56477804 | None:intergenic | 50.0% | |
| TTACCAGAGTCCATTTCCCC+TGG | - | chr1_1:56477798-56477817 | Msa0030320:intron | 50.0% | |
| ! | TTTCCAGGGGAAATGGACTC+TGG | + | chr1_1:56477804-56477823 | None:intergenic | 50.0% |
| CCTCTGATTTCCAGGGGAAA+TGG | + | chr1_1:56477811-56477830 | None:intergenic | 50.0% | |
| CCATTTCCCCTGGAAATCAG+AGG | - | chr1_1:56477808-56477827 | Msa0030320:intron | 50.0% | |
| CCTGAGCCAGCTGATATGAC+AGG | + | chr1_1:56471088-56471107 | None:intergenic | 55.0% | |
| ! | CCTGTCATATCAGCTGGCTC+AGG | - | chr1_1:56471085-56471104 | Msa0030320:intron | 55.0% |
| ! | CCACGCCTGTGTAATGGAGA+AGG | + | chr1_1:56471117-56471136 | None:intergenic | 55.0% |
| CCTTCTCCATTACACAGGCG+TGG | - | chr1_1:56471114-56471133 | Msa0030320:intron | 55.0% | |
| AAACCCTGTAGGGAGATGGC+AGG | - | chr1_1:56471322-56471341 | Msa0030320:intron | 55.0% | |
| CAACCTGCCATCTCCCTACA+GGG | + | chr1_1:56471328-56471347 | None:intergenic | 55.0% | |
| TCAACCTGCCATCTCCCTAC+AGG | + | chr1_1:56471329-56471348 | None:intergenic | 55.0% | |
| GCATATGCTACAGGGTCGAC+AGG | - | chr1_1:56471651-56471670 | Msa0030320:intron | 55.0% | |
| !! | CACGAGTTTGCTGTTCGCCT+AGG | - | chr1_1:56472949-56472968 | Msa0030320:intron | 55.0% |
| ACCTAGCTGAAGCAGTGCCT+AGG | + | chr1_1:56472969-56472988 | None:intergenic | 55.0% | |
| ! | TTTAGAATTGGGGTGGGGGG+GGG | - | chr1_1:56473745-56473764 | Msa0030320:intron | 55.0% |
| TAGGCAGCAGACGGGAATGT+AGG | - | chr1_1:56475529-56475548 | Msa0030320:CDS | 55.0% | |
| GCCGCAACATAGGTCACTGA+TGG | + | chr1_1:56476932-56476951 | None:intergenic | 55.0% | |
| TGAGCTGGAAGGTGAACAGC+CGG | - | chr1_1:56478279-56478298 | Msa0030320:intron | 55.0% | |
| ! | GCCTAGGCACTGCTTCAGCT+AGG | - | chr1_1:56472965-56472984 | Msa0030320:intron | 60.0% |
| TTAGAATTGGGGTGGGGGGG+GGG | - | chr1_1:56473746-56473765 | Msa0030320:intron | 60.0% | |
| AGTGACCTATGTTGCGGCGG+AGG | - | chr1_1:56476934-56476953 | Msa0030320:intron | 60.0% | |
| TAGAATTGGGGTGGGGGGGG+GGG | - | chr1_1:56473747-56473766 | Msa0030320:intron | 65.0% | |
| AGAATTGGGGTGGGGGGGGG+GGG | - | chr1_1:56473748-56473767 | Msa0030320:intron | 70.0% | |
| GAATTGGGGTGGGGGGGGGG+GGG | - | chr1_1:56473749-56473768 | Msa0030320:intron | 75.0% | |
| AATTGGGGTGGGGGGGGGGG+GGG | - | chr1_1:56473750-56473769 | Msa0030320:intron | 75.0% | |
| ! | ATTGGGGTGGGGGGGGGGGG+GGG | - | chr1_1:56473751-56473770 | Msa0030320:intron | 80.0% |
| ! | TTGGGGTGGGGGGGGGGGGG+GGG | - | chr1_1:56473752-56473771 | Msa0030320:intron | 85.0% |
| ! | TGGGGTGGGGGGGGGGGGGG+GGG | - | chr1_1:56473753-56473772 | Msa0030320:intron | 90.0% |
| ! | GGGGTGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473754-56473773 | Msa0030320:intron | 95.0% |
| ! | GGGTGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473755-56473774 | Msa0030320:intron | 95.0% |
| ! | GGTGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473756-56473775 | Msa0030320:intron | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473757-56473776 | Msa0030320:intron | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:56473758-56473777 | Msa0030320:intron | 95.0% |
| ! | GGGGGGGGGGGGGGGGGGGT+TGG | - | chr1_1:56473770-56473789 | Msa0030320:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 56470419 | 56478574 | 56470419 | ID=Msa0030320;Name=Msa0030320 |
| chr1_1 | mRNA | 56470419 | 56478574 | 56470419 | ID=Msa0030320-mRNA-1;Parent=Msa0030320;Name=Msa0030320-mRNA-1;_AED=0.12;_eAED=0.12;_QI=106|0.95|0.95|1|1|1|23|262|836 |
| chr1_1 | exon | 56470419 | 56470782 | 56470419 | ID=Msa0030320-mRNA-1:exon:16926;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56470867 | 56470977 | 56470867 | ID=Msa0030320-mRNA-1:exon:16925;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56471828 | 56471901 | 56471828 | ID=Msa0030320-mRNA-1:exon:16924;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56472010 | 56472079 | 56472010 | ID=Msa0030320-mRNA-1:exon:16923;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56472179 | 56472226 | 56472179 | ID=Msa0030320-mRNA-1:exon:16922;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56472739 | 56472882 | 56472739 | ID=Msa0030320-mRNA-1:exon:16921;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56472975 | 56473067 | 56472975 | ID=Msa0030320-mRNA-1:exon:16920;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56473348 | 56473461 | 56473348 | ID=Msa0030320-mRNA-1:exon:16919;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56473560 | 56473739 | 56473560 | ID=Msa0030320-mRNA-1:exon:16918;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56473831 | 56473911 | 56473831 | ID=Msa0030320-mRNA-1:exon:16917;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56474001 | 56474077 | 56474001 | ID=Msa0030320-mRNA-1:exon:16916;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56474403 | 56474550 | 56474403 | ID=Msa0030320-mRNA-1:exon:16915;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56474649 | 56474733 | 56474649 | ID=Msa0030320-mRNA-1:exon:16914;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56475471 | 56475557 | 56475471 | ID=Msa0030320-mRNA-1:exon:16913;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56475812 | 56475916 | 56475812 | ID=Msa0030320-mRNA-1:exon:16912;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56476007 | 56476161 | 56476007 | ID=Msa0030320-mRNA-1:exon:16911;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56476236 | 56476334 | 56476236 | ID=Msa0030320-mRNA-1:exon:16910;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56476447 | 56476522 | 56476447 | ID=Msa0030320-mRNA-1:exon:16909;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56476872 | 56476943 | 56476872 | ID=Msa0030320-mRNA-1:exon:16908;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56477043 | 56477329 | 56477043 | ID=Msa0030320-mRNA-1:exon:16907;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56477539 | 56477660 | 56477539 | ID=Msa0030320-mRNA-1:exon:16906;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56477837 | 56477919 | 56477837 | ID=Msa0030320-mRNA-1:exon:16905;Parent=Msa0030320-mRNA-1 |
| chr1_1 | exon | 56478371 | 56478574 | 56478371 | ID=Msa0030320-mRNA-1:exon:16904;Parent=Msa0030320-mRNA-1 |
| chr1_1 | five_prime_UTR | 56478469 | 56478574 | 56478469 | ID=Msa0030320-mRNA-1:five_prime_utr;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56478371 | 56478468 | 56478371 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56477837 | 56477919 | 56477837 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56477539 | 56477660 | 56477539 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56477043 | 56477329 | 56477043 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56476872 | 56476943 | 56476872 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56476447 | 56476522 | 56476447 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56476236 | 56476334 | 56476236 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56476007 | 56476161 | 56476007 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56475812 | 56475916 | 56475812 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56475471 | 56475557 | 56475471 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56474649 | 56474733 | 56474649 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56474403 | 56474550 | 56474403 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56474001 | 56474077 | 56474001 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56473831 | 56473911 | 56473831 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56473560 | 56473739 | 56473560 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56473348 | 56473461 | 56473348 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56472975 | 56473067 | 56472975 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56472739 | 56472882 | 56472739 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56472179 | 56472226 | 56472179 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56472010 | 56472079 | 56472010 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56471828 | 56471901 | 56471828 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56470867 | 56470977 | 56470867 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | CDS | 56470681 | 56470782 | 56470681 | ID=Msa0030320-mRNA-1:cds;Parent=Msa0030320-mRNA-1 |
| chr1_1 | three_prime_UTR | 56470419 | 56470680 | 56470419 | ID=Msa0030320-mRNA-1:three_prime_utr;Parent=Msa0030320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
