AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471080 MtrunA17_Chr3g0125831 97.782 586 12 1 1 586 1 585 0.0 1177
Msa0471080 MtrunA17_Chr1g0159441 76.549 597 117 9 15 594 13 603 0.0 766
Msa0471080 MtrunA17_Chr6g0473021 51.786 280 129 4 313 586 306 585 3.47e-97 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471080 AT1G43850.2 66.667 591 143 12 8 580 6 560 0.0 620
Msa0471080 AT1G43850.1 66.667 591 143 12 8 580 6 560 0.0 620
Msa0471080 AT5G62090.1 54.982 271 117 3 321 586 287 557 1.28e-99 322
Msa0471080 AT5G62090.2 54.982 271 117 3 321 586 287 557 1.28e-99 322
Msa0471080 AT5G62090.3 54.982 271 117 3 321 586 287 557 1.28e-99 322
Msa0471080 AT4G25515.1 54.275 269 117 4 317 580 153 420 2.01e-98 315
Msa0471080 AT4G25520.1 54.275 269 117 4 317 580 181 448 4.12e-97 313
Msa0471080 AT4G25520.2 54.275 269 117 4 317 580 181 448 4.12e-97 313

Find 343 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGGTTCTTGGAATTT+TGG 0.097044 3_3:-73309042 Msa0471090:five_prime_UTR
GAGTTAAAGCCTGGTATTTC+TGG 0.105995 3_3:-73303133 None:intergenic
CCAAATGAGGATGGAGAATT+AGG 0.155652 3_3:-73300992 None:intergenic
CAAATGTTGTTTCTTGGTTT+TGG 0.180895 3_3:+73300490 Msa0471080:five_prime_UTR
AACTGTTCTCCGAGGGAATT+TGG 0.183598 3_3:-73305751 None:intergenic
GTTCCATTAGTTAATGATTT+AGG 0.183788 3_3:+73303667 Msa0471080:CDS
CACAACCGATTGTTATAATT+AGG 0.185482 3_3:+73310546 Msa0471080:three_prime_UTR
AACCCTAATCAAGTAATTTA+AGG 0.186988 3_3:+73299946 Msa0471080:five_prime_UTR
CATCCTTAAATTACTTGATT+AGG 0.194267 3_3:-73299949 None:intergenic
CAATATCAACCATCTCTTTC+TGG 0.204070 3_3:+73306245 Msa0471080:three_prime_UTR
AAGGATTATCTTTCAATATA+TGG 0.206443 3_3:-73307194 Msa0471090:three_prime_UTR
TAAAACTCATTTCTGGTTCT+TGG 0.214172 3_3:-73309050 Msa0471090:five_prime_UTR
AAATGTGTAAAACTCATTTC+TGG 0.220442 3_3:-73309057 Msa0471090:five_prime_UTR
GAATCTTCCTCCTGTGAAAT+TGG 0.237077 3_3:+73301300 Msa0471080:CDS
ATCCTTAAATTACTTGATTA+GGG 0.237756 3_3:-73299948 None:intergenic
CATTAACTAATGGAACTTCT+AGG 0.238931 3_3:-73303660 None:intergenic
GCAGCAGCAACAACTCTTAA+AGG 0.247564 3_3:+73301534 Msa0471080:CDS
CGAAACACACCACTTCTTCT+TGG 0.252022 3_3:-73301858 None:intergenic
GATAAACAGACCTCCTTCTT+TGG 0.252476 3_3:-73307105 Msa0471090:three_prime_UTR
CTGAGGTATTAACAATCTTC+TGG 0.258328 3_3:-73302824 None:intergenic
TTCTTATATATAAAATATAT+TGG 0.262242 3_3:-73306836 None:intergenic
GAGCCTTTGCACTTTGTAAA+TGG 0.274414 3_3:+73306695 Msa0471080:three_prime_UTR
CCATGGTTTGGAACTCCATT+TGG 0.276313 3_3:-73300878 None:intergenic
ATCTCTGGCACCAGTTAAAA+TGG 0.282266 3_3:+73301348 Msa0471080:CDS
ATTCAGCATAGAAGTTATAT+TGG 0.283638 3_3:-73300846 None:intergenic
AATTGAAGAGAAATTAAATA+TGG 0.284376 3_3:-73300036 None:intergenic
AATGGCAGGTGCTGGTTCTA+TGG 0.286111 3_3:+73306355 Msa0471080:three_prime_UTR
TTGATTGGGAGGCGTTAAAA+TGG 0.286297 3_3:-73306177 None:intergenic
CAAGTTGGTCATTATTTAGC+TGG 0.290683 3_3:-73301252 None:intergenic
CCTTAAAATCGATGATTGTT+TGG 0.302028 3_3:-73307072 Msa0471090:three_prime_UTR
TTGGCTAGCTCATCAATAAT+AGG 0.304078 3_3:+73307568 Msa0471080:three_prime_UTR
ACAACCGATTGTTATAATTA+GGG 0.308264 3_3:+73310547 Msa0471080:three_prime_UTR
TTCCACCAGTACCATTCATT+TGG 0.311174 3_3:-73306334 None:intergenic
AATGACTTGAAGAATGTAAA+TGG 0.311192 3_3:+73306380 Msa0471080:three_prime_UTR
GGGTTCCTCTGGTCAAGTTC+AGG 0.313815 3_3:+73301036 Msa0471080:CDS
CCTAATTCTCCATCCTCATT+TGG 0.316296 3_3:+73300992 Msa0471080:CDS
CTGGGCCTGTGGCACAGTAC+TGG 0.322747 3_3:-73306084 None:intergenic
CCGTACTTTGTTGCTATGTT+TGG 0.325721 3_3:+73307496 Msa0471080:three_prime_UTR
CTCCATTGTTTCCAACTTCA+AGG 0.326814 3_3:-73308705 Msa0471090:CDS
GTTCCAAACCATGGGCTTAC+TGG 0.327052 3_3:+73300887 Msa0471080:CDS
TATCCACAGGTTAGTCAGAT+TGG 0.333227 3_3:+73303101 Msa0471080:intron
ACAAAGTGCAAAGGCTCTTA+AGG 0.333783 3_3:-73306689 None:intergenic
ATAGATTACAGCAGAGAAAC+TGG 0.334279 3_3:+73304315 Msa0471080:CDS
ATGAATCAAATGTTGTTTCT+TGG 0.338251 3_3:+73300484 Msa0471080:five_prime_UTR
CGGAAACCTGGCCGTGGGTT+TGG 0.339666 3_3:+73302234 Msa0471080:CDS
GTCTAGAATTCACAGAGTTT+TGG 0.339798 3_3:-73305992 None:intergenic
AGGTACCATGTCTCAATATT+TGG 0.341724 3_3:-73300663 None:intergenic
TTCAACAACATGAACATTCT+AGG 0.354079 3_3:+73300815 Msa0471080:CDS
TTCTTCTACTCAATAGTTTG+TGG 0.358508 3_3:+73308801 Msa0471080:three_prime_UTR
TTTCAATCAATGCGAGGAAT+AGG 0.360415 3_3:+73301202 Msa0471080:CDS
TACACTAACCATACCATTGC+TGG 0.361955 3_3:-73305907 None:intergenic
AGGATAACAACATCGAGTTT+TGG 0.365887 3_3:+73301801 Msa0471080:intron
CATGGTTTGGAACTCCATTT+GGG 0.368848 3_3:-73300877 None:intergenic
CAACAACCAGTTACTATTGT+AGG 0.369089 3_3:-73307028 None:intergenic
GGCACAGTGAATAGTAATTC+AGG 0.372087 3_3:+73306446 Msa0471080:three_prime_UTR
GGAGTTGGTGGCCCTGGTCC+TGG 0.373064 3_3:-73300686 None:intergenic
CACCACTTCTTCTTGGCATT+AGG 0.375097 3_3:-73301851 None:intergenic
AGTGGTCTAGGAGCAGTAAA+TGG 0.375149 3_3:+73306632 Msa0471080:three_prime_UTR
TCTTTGATGAGATCAAATTC+AGG 0.378327 3_3:+73300737 Msa0471080:CDS
AGACGACGGCAGAACACAAT+TGG 0.385147 3_3:+73306788 Msa0471080:three_prime_UTR
TCCACCAGTACCATTCATTT+GGG 0.386945 3_3:-73306333 None:intergenic
TATCCTAAATCATTAACTAA+TGG 0.388269 3_3:-73303670 None:intergenic
TTTGATCGCCATTTGAGTTA+TGG 0.389363 3_3:-73305851 None:intergenic
ATCTTTATCATATCTATGTA+AGG 0.391983 3_3:-73307213 Msa0471090:three_prime_UTR
ATATAAGAAATGAAAATTGT+TGG 0.393567 3_3:+73306850 Msa0471080:three_prime_UTR
TTGGCTGTTTGTGTGGCTAT+GGG 0.395310 3_3:+73306869 Msa0471080:three_prime_UTR
ACTTGTTGTATTCATTTGAT+TGG 0.395420 3_3:-73306192 None:intergenic
TAACGGTTGATCACAATGTT+GGG 0.397064 3_3:-73301374 None:intergenic
AAGTGGTGTGTTTCGATGTA+TGG 0.397306 3_3:+73301866 Msa0471080:CDS
GAACACAATTGGGTAGTGAT+AGG 0.399450 3_3:+73306799 Msa0471080:three_prime_UTR
AGAAACTGGGACCGGGCCTA+TGG 0.400346 3_3:+73304329 Msa0471080:CDS
AGTTATGGACCATCATTTGC+TGG 0.402837 3_3:-73305836 None:intergenic
AATTCAGGTGTCGGTAGTTA+TGG 0.402972 3_3:+73306461 Msa0471080:three_prime_UTR
TTGTGTTCTGCCGTCGTCTC+CGG 0.402976 3_3:-73306784 None:intergenic
TGCATGGCAGCAGCTTGCAC+TGG 0.408869 3_3:-73305876 None:intergenic
AGATCAAATTCAGGAATGTT+AGG 0.411638 3_3:+73300746 Msa0471080:CDS
GTTGGCTGTTTGTGTGGCTA+TGG 0.412699 3_3:+73306868 Msa0471080:three_prime_UTR
TTCTGGGGATGAGCTCTTCA+TGG 0.417801 3_3:-73302807 None:intergenic
GAAAAGGGGACGAGTTTGGC+TGG 0.418350 3_3:-73306103 None:intergenic
TAGATTGTGAGGTTCTTAGA+AGG 0.418643 3_3:+73308941 Msa0471080:three_prime_UTR
GTTTCCAACTTCAAGGGAAA+AGG 0.418825 3_3:-73308698 Msa0471090:CDS
AAATGGATCGAGGTGTTTGT+GGG 0.420412 3_3:-73306160 None:intergenic
AGTTAAAGCCTGGTATTTCT+GGG 0.421808 3_3:-73303132 None:intergenic
TTTGGTCTATGGCTTGTGTT+TGG 0.421822 3_3:+73300518 Msa0471080:five_prime_UTR
ATGACGAGTGCGGGTTCCTC+TGG 0.422523 3_3:+73301025 Msa0471080:CDS
CTCCTAGACCACTAAGTAGT+TGG 0.424624 3_3:-73306622 None:intergenic
CTGCCATTGAGTGCAAATAC+AGG 0.424692 3_3:+73306407 Msa0471080:three_prime_UTR
TACAATAGTAACTGGTTGTT+GGG 0.430595 3_3:+73307030 Msa0471080:three_prime_UTR
CCAGGGCCACCAACTCCTAT+TGG 0.431511 3_3:+73300692 Msa0471080:CDS
TGAGGTATTAACAATCTTCT+GGG 0.431587 3_3:-73302823 None:intergenic
CAGAAGATTGTTAATACCTC+AGG 0.434137 3_3:+73302825 Msa0471080:CDS
GGCACTGCGAAATATGTAAT+CGG 0.436923 3_3:+73302214 Msa0471080:CDS
GACTGAAAAGGGGACGAGTT+TGG 0.439552 3_3:-73306107 None:intergenic
TGACCAGTAAGCCCATGGTT+TGG 0.439906 3_3:-73300890 None:intergenic
CTTGTTGTATTCATTTGATT+GGG 0.439995 3_3:-73306191 None:intergenic
CTGAATCAATCTTTCCCAAA+TGG 0.441789 3_3:+73300863 Msa0471080:CDS
ACAAAGTAGCAACATGGCTT+TGG 0.442578 3_3:-73308770 Msa0471090:exon
GCATTGACTGCTGGCTGTGT+TGG 0.444226 3_3:-73301138 None:intergenic
AAGTTGGTCATTATTTAGCT+GGG 0.447678 3_3:-73301251 None:intergenic
GCATGGCAGCAGCTTGCACT+GGG 0.448137 3_3:-73305875 None:intergenic
CCAATAGGAGTTGGTGGCCC+TGG 0.449265 3_3:-73300692 None:intergenic
TGTCGCATCAGCCCGTCAAT+TGG 0.454618 3_3:+73303630 Msa0471080:CDS
CATTGCCAACACTGGAAAGT+TGG 0.454708 3_3:-73300958 None:intergenic
ACTGGTGGAATGGCAGGTGC+TGG 0.455306 3_3:+73306347 Msa0471080:three_prime_UTR
ACAACCACAAGCACTATTGT+TGG 0.456764 3_3:+73305960 Msa0471080:three_prime_UTR
AACAATGCAAGCAGTCCATA+TGG 0.457018 3_3:+73306026 Msa0471080:three_prime_UTR
AAAATGGATCGAGGTGTTTG+TGG 0.459601 3_3:-73306161 None:intergenic
GGTCCATCCACTATGCCTAA+TGG 0.461427 3_3:+73306497 Msa0471080:three_prime_UTR
TGAACTGAATTACCTCCATA+TGG 0.462833 3_3:-73306041 None:intergenic
TGTTGAGAATGCTGATGATC+TGG 0.466159 3_3:-73301097 None:intergenic
TGATCCCTAATTATAACAAT+CGG 0.467915 3_3:-73310551 Msa0471090:five_prime_UTR
CAAATGAGGATGGAGAATTA+GGG 0.468156 3_3:-73300991 None:intergenic
GGTGTAGGTGGTGACTGAAA+AGG 0.468586 3_3:-73306119 None:intergenic
AGCCGCCTCGCACACATCCC+TGG 0.469065 3_3:-73301643 None:intergenic
ATAGACTGAGCACCGCCAAT+AGG 0.469367 3_3:-73300707 None:intergenic
CTAAACACTACCTTCAGGTC+TGG 0.469515 3_3:-73302644 None:intergenic
CTACAATAGTAACTGGTTGT+TGG 0.470232 3_3:+73307029 Msa0471080:three_prime_UTR
CAGCGTGGAGGAATTGAAAC+TGG 0.471026 3_3:+73300923 Msa0471080:CDS
TTGCATAGTCTAGAACAATC+TGG 0.473833 3_3:-73302550 None:intergenic
CATATTTGATTGTCCAAATG+AGG 0.473935 3_3:-73301005 None:intergenic
CACATCCCTGGTTCATATGC+CGG 0.474324 3_3:-73301631 None:intergenic
GAGGAATGGCATCCATTGCT+CGG 0.474558 3_3:+73306564 Msa0471080:three_prime_UTR
GGTTCATATGCCGGTTTCAC+AGG 0.474575 3_3:-73301622 None:intergenic
CTAGGGCTTTAGCCAATTGA+CGG 0.474799 3_3:-73303642 None:intergenic
AGCCCTGTATTTGCACTCAA+TGG 0.476831 3_3:-73306410 None:intergenic
AGTTTGTGGAAAGTGCACTA+TGG 0.478079 3_3:+73308815 Msa0471080:three_prime_UTR
GGTTCCTCTGGTCAAGTTCA+GGG 0.478678 3_3:+73301037 Msa0471080:CDS
CAGTTGGTTTGTAGAAGAGT+TGG 0.479016 3_3:-73301071 None:intergenic
GAGATATGTGCGCTGCCTAC+AGG 0.479640 3_3:+73303699 Msa0471080:CDS
AGCTGGGGCTCTAACTTCAC+TGG 0.481168 3_3:-73301235 None:intergenic
TTCCTCCAGTACTGTGCCAC+AGG 0.482750 3_3:+73306079 Msa0471080:three_prime_UTR
TCAGTTCAGATTCCTTCCCC+TGG 0.482942 3_3:+73306056 Msa0471080:three_prime_UTR
TGGAGGAAGACACTGAGGTC+TGG 0.484266 3_3:+73308723 Msa0471080:three_prime_UTR
AGTTATGGAACAGTGGGGTT+CGG 0.485248 3_3:+73306476 Msa0471080:three_prime_UTR
CACCATGGTGTGGTCCATGC+AGG 0.487978 3_3:-73307600 Msa0471090:CDS
TTCAAGATAAAGTATGAAAG+TGG 0.488079 3_3:+73302470 Msa0471080:CDS
TATGAGGTCTCCTGTGAAAC+CGG 0.488097 3_3:+73301612 Msa0471080:CDS
AATTCAAACAATGAGATCTC+TGG 0.490160 3_3:+73301333 Msa0471080:CDS
TCAAGCTATGAATCATCAAC+AGG 0.491372 3_3:+73306589 Msa0471080:three_prime_UTR
ATGATGGTCCATAACTCAAA+TGG 0.491851 3_3:+73305843 Msa0471080:three_prime_UTR
CGTGAATATCATAATTCCTC+TGG 0.492525 3_3:+73302527 Msa0471080:CDS
TCCATGCCCTGCAAGGCAAA+AGG 0.493517 3_3:-73307244 Msa0471090:three_prime_UTR
ATAAGGTGGTTGTTCTGCTT+AGG 0.493845 3_3:+73300626 Msa0471080:five_prime_UTR
GTGTAGGTGGTGACTGAAAA+GGG 0.494134 3_3:-73306118 None:intergenic
AACTTACCAAACCCACGGCC+AGG 0.494705 3_3:-73302240 None:intergenic
ATTAACTAATGGAACTTCTA+GGG 0.496759 3_3:-73303659 None:intergenic
TGTTGTTGTTCCAATTTCAC+AGG 0.497261 3_3:-73301310 None:intergenic
TTGCAGGGCATGGAAAAGAA+TGG 0.497539 3_3:+73307253 Msa0471080:three_prime_UTR
AATAAAACTCATTAATCACT+TGG 0.500134 3_3:+73310605 Msa0471080:three_prime_UTR
ATTGAAGAGAAATTAAATAT+GGG 0.500794 3_3:-73300035 None:intergenic
GGAAGTAGCAGACAAACAAC+TGG 0.501012 3_3:+73301887 Msa0471080:CDS
GTCGGTAGTTATGGAACAGT+GGG 0.501594 3_3:+73306470 Msa0471080:three_prime_UTR
GACGAGTTTGGCTGGGCCTG+TGG 0.501848 3_3:-73306095 None:intergenic
ATGCGAGGAATAGGTGGAAT+GGG 0.502571 3_3:+73301211 Msa0471080:CDS
TGTTGCAGCGAAATATTAGC+TGG 0.502670 3_3:-73306218 None:intergenic
AACTCTGGAGCAGATGCATT+GGG 0.503450 3_3:-73303167 None:intergenic
ATAACGGTTGATCACAATGT+TGG 0.504627 3_3:-73301375 None:intergenic
GCTTGTTCCATTGCCAACAC+TGG 0.506213 3_3:-73300966 None:intergenic
AAAGTTTGGAACTTTGCACT+TGG 0.506690 3_3:-73299984 None:intergenic
CAACTGTTGAGGTTCTTCCT+AGG 0.506779 3_3:+73302444 Msa0471080:CDS
CAGCTAAATAATGACCAACT+TGG 0.509647 3_3:+73301253 Msa0471080:CDS
AAAGTATGAAAGTGGCACTC+TGG 0.510336 3_3:+73302478 Msa0471080:CDS
AATTGCTTCCAGCAATGGTA+TGG 0.510860 3_3:+73305899 Msa0471080:three_prime_UTR
AATTGGGTAGTGATAGGGTT+AGG 0.511818 3_3:+73306805 Msa0471080:three_prime_UTR
CTGTCAAACCAACTACTTAG+TGG 0.513194 3_3:+73306614 Msa0471080:three_prime_UTR
AACAACCAGTTACTATTGTA+GGG 0.513311 3_3:-73307027 None:intergenic
TTTCTGTAGGCAACACCAGA+TGG 0.513750 3_3:+73308613 Msa0471080:three_prime_UTR
GGCACAGTACTGGAGGAACC+AGG 0.514200 3_3:-73306074 None:intergenic
TGCAGGGCATGGAAAAGAAT+GGG 0.514634 3_3:+73307254 Msa0471080:three_prime_UTR
TGCAAGTGAAACCCCTGTGC+TGG 0.515943 3_3:-73307635 Msa0471090:CDS
GACATGGTACCTCCAGGACC+AGG 0.516035 3_3:+73300674 Msa0471080:exon
GAGCAGTGACTGACTCAAGC+TGG 0.516226 3_3:-73307672 Msa0471090:CDS
TCCCTTGAAGTTGGAAACAA+TGG 0.517273 3_3:+73308703 Msa0471080:three_prime_UTR
CAGAGGAATTATGATATTCA+CGG 0.518684 3_3:-73302526 None:intergenic
GTGAAACCGGCATATGAACC+AGG 0.520338 3_3:+73301625 Msa0471080:CDS
GTGTTCTCAGCTCAAAGAGC+AGG 0.522900 3_3:-73308673 Msa0471090:CDS
CAATCAAATATGACGAGTGC+GGG 0.524302 3_3:+73301016 Msa0471080:CDS
GGGTGAGTTTCAGTTTGTGA+TGG 0.526135 3_3:-73306965 None:intergenic
TCCATTGTTTCCAACTTCAA+GGG 0.526913 3_3:-73308704 Msa0471090:CDS
GAGCTAGCCAAAGAATATGC+TGG 0.527432 3_3:-73307556 Msa0471090:CDS
ATGGCAGGTGCTGGTTCTAT+GGG 0.527648 3_3:+73306356 Msa0471080:three_prime_UTR
AGAGGAATTATGATATTCAC+GGG 0.528664 3_3:-73302525 None:intergenic
TTGAAATAAAGTAATATACA+AGG 0.529581 3_3:+73307152 Msa0471080:three_prime_UTR
GGTTTCACAGGAGACCTCAT+AGG 0.530330 3_3:-73301610 None:intergenic
TGGATAAGCTTCTAGTGTTG+TGG 0.530759 3_3:+73308852 Msa0471080:three_prime_UTR
TCAACACTATCATTCCCATC+TGG 0.532444 3_3:-73308628 Msa0471090:CDS
GTTGTAGACAGAGTAGACTT+TGG 0.532653 3_3:+73307403 Msa0471080:three_prime_UTR
ATGGATCGAGGTGTTTGTGG+GGG 0.534543 3_3:-73306158 None:intergenic
AATGGATCGAGGTGTTTGTG+GGG 0.535949 3_3:-73306159 None:intergenic
ATTGAAACTGGAAGTGACAT+AGG 0.536672 3_3:+73300935 Msa0471080:CDS
AGAACTGTTGCATTGACTGC+TGG 0.536882 3_3:-73301147 None:intergenic
TCAGGAATGTTAGGAGCTCA+AGG 0.537241 3_3:+73300755 Msa0471080:CDS
AACCATGGGCTTACTGGTCA+AGG 0.537353 3_3:+73300893 Msa0471080:CDS
TGCAAAGGCTCTTAAGGAGA+AGG 0.539224 3_3:-73306683 None:intergenic
GACGACGGCAGAACACAATT+GGG 0.539397 3_3:+73306789 Msa0471080:three_prime_UTR
TTCCTTGACCAGTAAGCCCA+TGG 0.539939 3_3:-73300895 None:intergenic
ATGGTAGAATTGCCTCTGGC+CGG 0.541346 3_3:+73306765 Msa0471080:three_prime_UTR
ATAGGCCAACTTTCCAGTGT+TGG 0.541367 3_3:+73300953 Msa0471080:CDS
AATGGTACTGGTGGAATGGC+AGG 0.542131 3_3:+73306341 Msa0471080:three_prime_UTR
TCGACCATGAGTGTGTATCA+AGG 0.542490 3_3:-73306986 None:intergenic
CCAAACATAGCAACAAAGTA+CGG 0.542679 3_3:-73307496 Msa0471090:CDS
ATCATTCAGTCATGAACGGA+AGG 0.542875 3_3:+73306540 Msa0471080:three_prime_UTR
CTCCTAATGCCAAGAAGAAG+TGG 0.543723 3_3:+73301849 Msa0471080:CDS
GCACCGCCAATAGGAGTTGG+TGG 0.544841 3_3:-73300698 None:intergenic
GTTGTATTCATTTGATTGGG+AGG 0.544994 3_3:-73306188 None:intergenic
TGTAATCGGAAACCTGGCCG+TGG 0.545859 3_3:+73302228 Msa0471080:CDS
ACAGGGCTCAACAATGGTAA+TGG 0.546589 3_3:+73306425 Msa0471080:three_prime_UTR
AGGAATGGCATCCATTGCTC+GGG 0.547429 3_3:+73306565 Msa0471080:three_prime_UTR
AATGCGAGGAATAGGTGGAA+TGG 0.547690 3_3:+73301210 Msa0471080:CDS
TAATGGAATCAGAGCTGCTA+TGG 0.548317 3_3:+73306514 Msa0471080:three_prime_UTR
TAGGGCTTTAGCCAATTGAC+GGG 0.548407 3_3:-73303641 None:intergenic
GAAACTGGGACCGGGCCTAT+GGG 0.548833 3_3:+73304330 Msa0471080:CDS
CATGAACGGAAGGGGAGGAA+TGG 0.549171 3_3:+73306550 Msa0471080:three_prime_UTR
AAGTTTGGAACTTTGCACTT+GGG 0.549499 3_3:-73299983 None:intergenic
ATCGTGAATCAACATAGAAA+CGG 0.549647 3_3:-73304455 None:intergenic
ATGCAAATTGCTTCCAGCAA+TGG 0.549667 3_3:+73305894 Msa0471080:three_prime_UTR
TGGATCGAGGTGTTTGTGGG+GGG 0.550634 3_3:-73306157 None:intergenic
AGGTAATCAACATCCAAAGA+AGG 0.551600 3_3:+73307092 Msa0471080:three_prime_UTR
TCATCCCAAATGAATGGTAC+TGG 0.552610 3_3:+73306329 Msa0471080:three_prime_UTR
ATAGCAGCTCTGATTCCATT+AGG 0.553097 3_3:-73306512 None:intergenic
GCTCGTGAAGCTGTAAATGA+AGG 0.553122 3_3:-73308571 Msa0471090:intron
TTGCCTCTGGCCGGAGACGA+CGG 0.553732 3_3:+73306774 Msa0471080:three_prime_UTR
TTTGATTGTCCAAATGAGGA+TGG 0.554228 3_3:-73301001 None:intergenic
AACACAATTGGGTAGTGATA+GGG 0.554386 3_3:+73306800 Msa0471080:three_prime_UTR
CAAATGGAGTTCCAAACCAT+GGG 0.554969 3_3:+73300879 Msa0471080:CDS
TAACTCTGGAGCAGATGCAT+TGG 0.555025 3_3:-73303168 None:intergenic
TGTAAATAGTTCTGTCAACT+CGG 0.555085 3_3:+73305926 Msa0471080:three_prime_UTR
CGACCATGAGTGTGTATCAA+GGG 0.556676 3_3:-73306985 None:intergenic
GTCTACTCTGTCTACAACTG+TGG 0.556776 3_3:-73307398 Msa0471090:CDS
GCAGCTGCTGCTGTCCAAGT+TGG 0.559215 3_3:-73301267 None:intergenic
GGGCCACCAACTCCTATTGG+CGG 0.559574 3_3:+73300695 Msa0471080:CDS
CATTCAGTCATGAACGGAAG+GGG 0.559632 3_3:+73306542 Msa0471080:three_prime_UTR
GAATTTGATCTCATCAAAGA+AGG 0.560762 3_3:-73300734 None:intergenic
TACAGCAGAGAAACTGGGAC+CGG 0.562164 3_3:+73304321 Msa0471080:CDS
CCAAATGGAGTTCCAAACCA+TGG 0.562346 3_3:+73300878 Msa0471080:CDS
AGCAATGGTAGAATTGCCTC+TGG 0.562976 3_3:+73306761 Msa0471080:three_prime_UTR
GGGTTTCACTTGCAAGAACA+AGG 0.564621 3_3:+73307644 Msa0471080:three_prime_UTR
AACCAACTACTTAGTGGTCT+AGG 0.565934 3_3:+73306620 Msa0471080:three_prime_UTR
CAACTTTCCAGTGTTGGCAA+TGG 0.566933 3_3:+73300959 Msa0471080:CDS
GGAGACACAAGCGAAGACAT+TGG 0.568137 3_3:-73300782 None:intergenic
AACAGCAAAATATGCCTATG+AGG 0.569429 3_3:+73301596 Msa0471080:CDS
CAATCAATGCGAGGAATAGG+TGG 0.569858 3_3:+73301205 Msa0471080:CDS
CAACTTCGTGTTGTTCGTGA+TGG 0.570992 3_3:+73302599 Msa0471080:CDS
GGATATTATTATAGATTGTG+AGG 0.572535 3_3:+73308930 Msa0471080:three_prime_UTR
TCAACACCTCATGCTTCTGA+AGG 0.572552 3_3:+73300547 Msa0471080:five_prime_UTR
CTGCCGTCGTCTCCGGCCAG+AGG 0.574119 3_3:-73306777 None:intergenic
AAAAGGGGACGAGTTTGGCT+GGG 0.575157 3_3:-73306102 None:intergenic
AAGACACTGAGGTCTGGCTG+TGG 0.576209 3_3:+73308729 Msa0471080:three_prime_UTR
TTATTAGATGAGGATGGTGT+AGG 0.578894 3_3:-73306134 None:intergenic
TTCTGTAGGCAACACCAGAT+GGG 0.579739 3_3:+73308614 Msa0471080:three_prime_UTR
GTTGGTGGCCCTGGTCCTGG+AGG 0.579801 3_3:-73300683 None:intergenic
TCTGATTCCATTAGGCATAG+TGG 0.581602 3_3:-73306504 None:intergenic
GTGAATAGTAATTCAGGTGT+CGG 0.583232 3_3:+73306452 Msa0471080:three_prime_UTR
ACAGCAGCACCAGCAAATGA+TGG 0.583603 3_3:+73305827 Msa0471080:three_prime_UTR
ATAAGCTTCTAGTGTTGTGG+TGG 0.584014 3_3:+73308855 Msa0471080:three_prime_UTR
GCGAAGATTGTCTCGACATG+TGG 0.587625 3_3:-73301441 None:intergenic
TGCCATTGAGTGCAAATACA+GGG 0.588191 3_3:+73306408 Msa0471080:three_prime_UTR
TGAGCACCGCCAATAGGAGT+TGG 0.590126 3_3:-73300701 None:intergenic
CATGTCGAGACAATCTTCGC+AGG 0.590147 3_3:+73301444 Msa0471080:CDS
TCCCAAATGAATGGTACTGG+TGG 0.590597 3_3:+73306332 Msa0471080:three_prime_UTR
CGGAGAACAGTTAATTCGTG+TGG 0.591476 3_3:+73305762 Msa0471080:three_prime_UTR
AGCGGTTGCCCAGAAATACC+AGG 0.591527 3_3:+73303124 Msa0471080:CDS
TACTTTATCTTGAAAAGCCT+AGG 0.592432 3_3:-73302461 None:intergenic
TATTGAGACATGGTACCTCC+AGG 0.592611 3_3:+73300668 Msa0471080:exon
TGGCTGTTTGTGTGGCTATG+GGG 0.592981 3_3:+73306870 Msa0471080:three_prime_UTR
TGTGTGTATGTGTTTGCAAG+TGG 0.593815 3_3:+73308909 Msa0471080:three_prime_UTR
GAAATATGTAATCGGAAACC+TGG 0.595206 3_3:+73302222 Msa0471080:CDS
GCTGATGATCTGGCAACAGT+TGG 0.595664 3_3:-73301087 None:intergenic
AAGTCCAACAATAGTGCTTG+TGG 0.596942 3_3:-73305964 None:intergenic
AAGATTGTCTCGACATGTGG+AGG 0.598788 3_3:-73301438 None:intergenic
GGCCTGTGGCACAGTACTGG+AGG 0.599755 3_3:-73306081 None:intergenic
ATGATGTCATCCCAAATGAA+TGG 0.599864 3_3:+73306323 Msa0471080:three_prime_UTR
AAAATTGTTGGCTGTTTGTG+TGG 0.602669 3_3:+73306862 Msa0471080:three_prime_UTR
CTTGAAGTTGGAAACAATGG+AGG 0.602873 3_3:+73308706 Msa0471080:three_prime_UTR
TCAGTCATGAACGGAAGGGG+AGG 0.604685 3_3:+73306545 Msa0471080:three_prime_UTR
TGTAAATGGTACGCATGTTG+TGG 0.604797 3_3:+73306709 Msa0471080:three_prime_UTR
TCATGGTCGAGTAACATGTC+AGG 0.604845 3_3:+73306999 Msa0471080:three_prime_UTR
AGTTGGTCATTATTTAGCTG+GGG 0.606336 3_3:-73301250 None:intergenic
TATGAACTTACCCATAGGCC+CGG 0.606924 3_3:-73304340 None:intergenic
CATAGCTTGATCCCGAGCAA+TGG 0.610356 3_3:-73306576 None:intergenic
TATGATGCAGATATCAGAAG+TGG 0.614043 3_3:+73304272 Msa0471080:intron
TCATTCAGTCATGAACGGAA+GGG 0.614320 3_3:+73306541 Msa0471080:three_prime_UTR
CAGGAATGTTAGGAGCTCAA+GGG 0.615043 3_3:+73300756 Msa0471080:CDS
CAGTTTCAATTCCTCCACGC+TGG 0.616906 3_3:-73300922 None:intergenic
AGGAATGTTAGGAGCTCAAG+GGG 0.617165 3_3:+73300757 Msa0471080:CDS
AACGGTTGATCACAATGTTG+GGG 0.617801 3_3:-73301373 None:intergenic
ATAGGCGCTATCATCCTGCA+TGG 0.617910 3_3:+73307586 Msa0471080:three_prime_UTR
GTAAATCATTCAGTCATGAA+CGG 0.620772 3_3:+73306536 Msa0471080:three_prime_UTR
AATGAATGGTACTGGTGGAA+TGG 0.621122 3_3:+73306337 Msa0471080:three_prime_UTR
GCACAGTACTGGAGGAACCA+GGG 0.623903 3_3:-73306073 None:intergenic
ATGAACCAGGGATGTGTGCG+AGG 0.624182 3_3:+73301638 Msa0471080:CDS
AGAGCTTAGCCAAATTCCCT+CGG 0.625342 3_3:+73305742 Msa0471080:exon
ATTGCTGGAAGCAATTTGCA+TGG 0.625938 3_3:-73305892 None:intergenic
TAAAGGCAATGCCTCAGCAA+CGG 0.626504 3_3:+73301551 Msa0471080:CDS
TGTTGTTCCAATTTCACAGG+AGG 0.626552 3_3:-73301307 None:intergenic
TAAACTATGAACTTACCCAT+AGG 0.627099 3_3:-73304345 None:intergenic
ATTCCATTAGGCATAGTGGA+TGG 0.627577 3_3:-73306500 None:intergenic
GGCATTAGGAGCATAATACT+CGG 0.628564 3_3:-73301837 None:intergenic
ACGAATTAACTGTTCTCCGA+GGG 0.629862 3_3:-73305758 None:intergenic
AGTGCTTGTGGTTGTTGATG+CGG 0.631524 3_3:-73305952 None:intergenic
GCAAATACAGGGCTCAACAA+TGG 0.631885 3_3:+73306419 Msa0471080:three_prime_UTR
TCACCCTTGATACACACTCA+TGG 0.633035 3_3:+73306982 Msa0471080:three_prime_UTR
GTCTAGAACAATCTGGCCAG+AGG 0.636657 3_3:-73302543 None:intergenic
TTAGAAGGCTCGAATTCATG+TGG 0.637219 3_3:+73308956 Msa0471080:three_prime_UTR
TTAGATGAGGATGGTGTAGG+TGG 0.639430 3_3:-73306131 None:intergenic
TAGATTACAGCAGAGAAACT+GGG 0.644300 3_3:+73304316 Msa0471080:CDS
GTACTGGAGGAACCAGGGGA+AGG 0.645133 3_3:-73306068 None:intergenic
TCAGCATCACCAGAAAGAGA+TGG 0.646754 3_3:-73306254 None:intergenic
TAATCAACATCCAAAGAAGG+AGG 0.649027 3_3:+73307095 Msa0471080:three_prime_UTR
GTAATCGGAAACCTGGCCGT+GGG 0.651146 3_3:+73302229 Msa0471080:CDS
ACAGCAGAGAAACTGGGACC+GGG 0.651348 3_3:+73304322 Msa0471080:CDS
CACAGTACTGGAGGAACCAG+GGG 0.652906 3_3:-73306072 None:intergenic
TGTCGGTAGTTATGGAACAG+TGG 0.656517 3_3:+73306469 Msa0471080:three_prime_UTR
ACAATCAAATATGACGAGTG+CGG 0.662545 3_3:+73301015 Msa0471080:CDS
GAAGGCTCGAATTCATGTGG+TGG 0.662721 3_3:+73308959 Msa0471080:three_prime_UTR
AGCAGCAGCTGCAATCAATG+AGG 0.662960 3_3:+73301278 Msa0471080:CDS
GTACCATTTACAAAGTGCAA+AGG 0.666064 3_3:-73306698 None:intergenic
ACAGGTTAGTCAGATTGGAG+CGG 0.669070 3_3:+73303106 Msa0471080:intron
GTAGCTGTAAAAGCCTGTGA+TGG 0.669795 3_3:-73301495 None:intergenic
CACGAATTAACTGTTCTCCG+AGG 0.678845 3_3:-73305759 None:intergenic
ATGATTCCTTCAGAAGCATG+AGG 0.678970 3_3:-73300553 None:intergenic
ACATGGTACCTCCAGGACCA+GGG 0.680831 3_3:+73300675 Msa0471080:exon
TTACACACAAAGTAGCAACA+TGG 0.681780 3_3:-73308776 Msa0471090:exon
ATCCTGCATGGACCACACCA+TGG 0.683330 3_3:+73307598 Msa0471080:three_prime_UTR
TTGACCCTGAACTTGACCAG+AGG 0.683835 3_3:-73301041 None:intergenic
GAGGTATTAACAATCTTCTG+GGG 0.685449 3_3:-73302822 None:intergenic
GGTAATTGAGACCGTTGCTG+AGG 0.689043 3_3:-73301562 None:intergenic
TATAAAATATATTGGCACAG+TGG 0.690000 3_3:-73306828 None:intergenic
TGTAGGTGGTGACTGAAAAG+GGG 0.690728 3_3:-73306117 None:intergenic
TGAAACCGGCATATGAACCA+GGG 0.694172 3_3:+73301626 Msa0471080:CDS
AACCAGGGATGTGTGCGAGG+CGG 0.694322 3_3:+73301641 Msa0471080:CDS
CAAGGAAGTAGCCAGCGTGG+AGG 0.703856 3_3:+73300911 Msa0471080:CDS
GGTCAAGGAAGTAGCCAGCG+TGG 0.705551 3_3:+73300908 Msa0471080:CDS
GGAGGCGTTAAAATGGATCG+AGG 0.708783 3_3:-73306170 None:intergenic
TGTTGCTGCTGTGTATTCAG+AGG 0.710158 3_3:-73301175 None:intergenic
ATGTTGTTGAACTGAGTACG+AGG 0.710776 3_3:-73300803 None:intergenic
AATGCAAGCAGTCCATATGG+AGG 0.712689 3_3:+73306029 Msa0471080:three_prime_UTR
AAAGACCAAATATTGAGACA+TGG 0.717389 3_3:+73300658 Msa0471080:exon
AACAATGGAGGAAGACACTG+AGG 0.723169 3_3:+73308718 Msa0471080:three_prime_UTR
TTAGTGGGACAAAAGCAGAG+AGG 0.733816 3_3:-73309002 Msa0471090:five_prime_UTR
GAAGTGATCAATGAATTGAG+AGG 0.739850 3_3:-73300013 None:intergenic
TCGGTAGTTATGGAACAGTG+GGG 0.754560 3_3:+73306471 Msa0471080:three_prime_UTR
GAGGAATTATGATATTCACG+GGG 0.772899 3_3:-73302524 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTATCTTTTTATTTC+TGG + chr3_3:73310319-73310338 Msa0471080:intron 15.0%
!! AATAAATTGTCAGATTTATC+CGG - chr3_3:73310432-73310451 Msa0471090:intron 20.0%
!! ATAAATCTGACAATTTATTC+CGG + chr3_3:73310433-73310452 Msa0471080:intron 20.0%
!! AATAAAACTCATTAATCACT+TGG + chr3_3:73310605-73310624 Msa0471080:three_prime_UTR 20.0%
!!! AGGGTTTTATAAGTGTAATT+AGG - chr3_3:73299932-73299951 None:intergenic 25.0%
! AGGAGATTAGAAATAGATTT+AGG + chr3_3:73310227-73310246 Msa0471080:intron 25.0%
! ACAACCGATTGTTATAATTA+GGG + chr3_3:73310547-73310566 Msa0471080:three_prime_UTR 25.0%
! TGATCCCTAATTATAACAAT+CGG - chr3_3:73310554-73310573 Msa0471090:five_prime_UTR 25.0%
! AACCCTAATCAAGTAATTTA+AGG + chr3_3:73299946-73299965 Msa0471080:five_prime_UTR 25.0GCAGTTTCTCTCACTTTCTC%
! GAGATTAGAATTAGGCTTTT+AGG + chr3_3:73310207-73310226 Msa0471080:intron 30.0%
CCATTCAGGAATTTATAATC+CGG + chr3_3:73310410-73310429 Msa0471080:intron 30.0%
!!! ATTTTTTCCATTTTTACCCC+TGG - chr3_3:73310474-73310493 Msa0471090:intron 30.0%
GGGGTAAAAATGGAAAAAAT+AGG + chr3_3:73310474-73310493 Msa0471080:intron 30.0%
CACAACCGATTGTTATAATT+AGG + chr3_3:73310546-73310565 Msa0471080:three_prime_UTR 30.0%
GCTCTTAGGAGATTAGAATT+AGG + chr3_3:73310199-73310218 Msa0471080:intron 35.0%
GCTTGAAACTGAAAAAGTTC+TGG + chr3_3:73310380-73310399 Msa0471080:intron 35.0%
CCGGATTATAAATTCCTGAA+TGG - chr3_3:73310413-73310432 Msa0471090:intron 35.0%
!! AGTTCTTAGCTTGACTTGTC+TGG + chr3_3:73310045-73310064 Msa0471080:intron 40.0%
!! GTTCTTAGCTTGACTTGTCT+GGG + chr3_3:73310046-73310065 Msa0471080:intron 40.0%
TATGTCCTATCACATACCAG+TGG + chr3_3:73310172-73310191 Msa0471080:intron 40.0%
!! GAATGACTTTTTCCACCCTA+TGG - chr3_3:73310514-73310533 Msa0471090:intron 40.0%
AACTGCACTGCAAAGAAGTG+TGG + chr3_3:73309994-73310013 Msa0471080:intron 45.0%
! GCAAAGAAGTGTGGTTCATC+TGG + chr3_3:73310003-73310022 Msa0471080:intron 45.0%
! AAGAAGTGTGGTTCATCTGG+AGG + chr3_3:73310006-73310025 Msa0471080:intron 45.0%
CATATCAGTAGCTTCCCTGT+TGG - chr3_3:73310156-73310175 Msa0471090:intron 45.0%
CCTAACCACTGGTATGTGAT+AGG - chr3_3:73310180-73310199 Msa0471090:intron 45.0%
CCTATCACATACCAGTGGTT+AGG + chr3_3:73310177-73310196 Msa0471080:intron 45.0%
ATACCAGTGGTTAGGCTCTT+AGG + chr3_3:73310185-73310204 Msa0471080:intron 45.0%
! GTTCTGGACAAAGACCATTC+AGG + chr3_3:73310396-73310415 Msa0471080:intron 45.0%
!! CTGGTCTGGAATTCGTTTTC+CGG - chr3_3:73310455-73310474 Msa0471090:intron 45.0%
GGAAAACGAATTCCAGACCA+GGG + chr3_3:73310454-73310473 Msa0471080:intron 45.0%
GAAAACGAATTCCAGACCAG+GGG + chr3_3:73310455-73310474 Msa0471080:intron 45.0%
TTCCAGACCAGGGGTAAAAA+TGG + chr3_3:73310464-73310483 Msa0471080:intron 45.0%
!! TTCCATTTTTACCCCTGGTC+TGG - chr3_3:73310469-73310488 Msa0471090:intron 45.0%
TGGTTCATCTGGAGGTCATG+TGG + chr3_3:73310014-73310033 Msa0471080:intron 50.0%
GGTTCATCTGGAGGTCATGT+GGG + chr3_3:73310015-73310034 Msa0471080:intron 50.0%
GTAGAAACCAATGCCGCTGA+GGG - chr3_3:73310096-73310115 Msa0471090:intron 50.0%
AGTAGAAACCAATGCCGCTG+AGG - chr3_3:73310097-73310116 Msa0471090:intron 50.0%
TCAGTAGCTTCCCTGTTGGA+GGG - chr3_3:73310152-73310171 Msa0471090:intron 50.0%
ATCAGTAGCTTCCCTGTTGG+AGG - chr3_3:73310153-73310172 Msa0471090:intron 50.0%
TCTCCTAAGAGCCTAACCAC+TGG - chr3_3:73310191-73310210 Msa0471090:intron 50.0%
CGGAAAACGAATTCCAGACC+AGG + chr3_3:73310453-73310472 Msa0471080:intron 50.0%
TCCCTGTTGGAGGGTAACCA+GGG - chr3_3:73310143-73310162 Msa0471090:intron 55.0%
TTCCCTGTTGGAGGGTAACC+AGG - chr3_3:73310144-73310163 Msa0471090:intron 55.0%
GACGCGCGAGAAAAGCCATA+GGG + chr3_3:73310496-73310515 Msa0471080:intron 55.0%
AATGCCGCTGAGGGAGGTAG+GGG - chr3_3:73310087-73310106 Msa0471090:intron 60.0%
CAATGCCGCTGAGGGAGGTA+GGG - chr3_3:73310088-73310107 Msa0471090:intron 60.0%
GAAACCAATGCCGCTGAGGG+AGG - chr3_3:73310093-73310112 Msa0471090:intron 60.0%
TGTTGGAGGGTAACCAGGGG+AGG - chr3_3:73310139-73310158 Msa0471090:intron 60.0%
TCCCCTGGTTACCCTCCAAC+AGG + chr3_3:73310138-73310157 Msa0471080:intron 60.0%
CCCTGTTGGAGGGTAACCAG+GGG - chr3_3:73310142-73310161 Msa0471090:intron 60.0%
CCCCTGGTTACCCTCCAACA+GGG + chr3_3:73310139-73310158 Msa0471080:intron 60.0%
GGACGCGCGAGAAAAGCCAT+AGG + chr3_3:73310495-73310514 Msa0471080:intron 60.0%
GCGCGAGAAAAGCCATAGGG+TGG + chr3_3:73310499-73310518 Msa0471080:intron 60.0%
ATGCCGCTGAGGGAGGTAGG+GGG - chr3_3:73310086-73310105 Msa0471090:intron 65.0%
CCAATGCCGCTGAGGGAGGT+AGG - chr3_3:73310089-73310108 Msa0471090:intron 65.0%
CCTACCTCCCTCAGCGGCAT+TGG + chr3_3:73310086-73310105 Msa0471080:intron 65.0%
TAACCAGGGGAGGAGGGGAG+AGG - chr3_3:73310129-73310148 Msa0471090:intron 65.0%
GAGGGTAACCAGGGGAGGAG+GGG - chr3_3:73310134-73310153 Msa0471090:intron 65.0%
GGAGGGTAACCAGGGGAGGA+GGG - chr3_3:73310135-73310154 Msa0471090:intron 65.0%
TGGAGGGTAACCAGGGGAGG+AGG - chr3_3:73310136-73310155 Msa0471090:intron 65.0%
GCACCCCCTACCTCCCTCAG+CGG + chr3_3:73310080-73310099 Msa0471080:intron 70.0%
CAGGGGAGGAGGGGAGAGGA+GGG - chr3_3:73310125-73310144 Msa0471090:intron 70.0%
GGAGGAGGGGAGAGGAGGGC+GGG - chr3_3:73310121-73310140 Msa0471090:intron 75.0%
GGGAGGAGGGGAGAGGAGGG+CGG - chr3_3:73310122-73310141 Msa0471090:intron 75.0%
CCAGGGGAGGAGGGGAGAGG+AGG - chr3_3:73310126-73310145 Msa0471090:intron 75.0%
CCTCCTCTCCCCTCCTCCCC+TGG + chr3_3:73310123-73310142 Msa0471080:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73299831 73310649 73299831 ID=Msa0471080;Name=Msa0471080
chr3_3 mRNA 73299831 73310649 73299831 ID=Msa0471080-mRNA-1;Parent=Msa0471080;Name=Msa0471080-mRNA-1;_AED=0.20;_eAED=0.20;_QI=504|0.90|0.91|1|0.72|0.58|12|2594|622
chr3_3 exon 73299831 73300080 73299831 ID=Msa0471080-mRNA-1:exon:18549;Parent=Msa0471080-mRNA-1
chr3_3 exon 73300423 73301702 73300423 ID=Msa0471080-mRNA-1:exon:18550;Parent=Msa0471080-mRNA-1
chr3_3 exon 73301803 73301922 73301803 ID=Msa0471080-mRNA-1:exon:18551;Parent=Msa0471080-mRNA-1
chr3_3 exon 73302207 73302255 73302207 ID=Msa0471080-mRNA-1:exon:18552;Parent=Msa0471080-mRNA-1
chr3_3 exon 73302441 73302655 73302441 ID=Msa0471080-mRNA-1:exon:18553;Parent=Msa0471080-mRNA-1
chr3_3 exon 73302778 73302846 73302778 ID=Msa0471080-mRNA-1:exon:18554;Parent=Msa0471080-mRNA-1
chr3_3 exon 73303110 73303207 73303110 ID=Msa0471080-mRNA-1:exon:18555;Parent=Msa0471080-mRNA-1
chr3_3 exon 73303627 73303720 73303627 ID=Msa0471080-mRNA-1:exon:18556;Parent=Msa0471080-mRNA-1
chr3_3 exon 73304282 73304477 73304282 ID=Msa0471080-mRNA-1:exon:18557;Parent=Msa0471080-mRNA-1
chr3_3 exon 73305742 73307697 73305742 ID=Msa0471080-mRNA-1:exon:18558;Parent=Msa0471080-mRNA-1
chr3_3 exon 73308572 73309100 73308572 ID=Msa0471080-mRNA-1:exon:18559;Parent=Msa0471080-mRNA-1
chr3_3 exon 73310539 73310649 73310539 ID=Msa0471080-mRNA-1:exon:18560;Parent=Msa0471080-mRNA-1
chr3_3 five_prime_UTR 73299831 73300080 73299831 ID=Msa0471080-mRNA-1:five_prime_utr;Parent=Msa0471080-mRNA-1
chr3_3 five_prime_UTR 73300423 73300676 73300423 ID=Msa0471080-mRNA-1:five_prime_utr;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73300677 73301702 73300677 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73301803 73301922 73301803 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73302207 73302255 73302207 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73302441 73302655 73302441 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73302778 73302846 73302778 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73303110 73303207 73303110 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73303627 73303720 73303627 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73304282 73304477 73304282 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 CDS 73305742 73305743 73305742 ID=Msa0471080-mRNA-1:cds;Parent=Msa0471080-mRNA-1
chr3_3 three_prime_UTR 73305744 73307697 73305744 ID=Msa0471080-mRNA-1:three_prime_utr;Parent=Msa0471080-mRNA-1
chr3_3 three_prime_UTR 73308572 73309100 73308572 ID=Msa0471080-mRNA-1:three_prime_utr;Parent=Msa0471080-mRNA-1
chr3_3 three_prime_UTR 73310539 73310649 73310539 ID=Msa0471080-mRNA-1:three_prime_utr;Parent=Msa0471080-mRNA-1
Gene Sequence

>Msa0471080

ATGGTACCTCCAGGACCAGGGCCACCAACTCCTATTGGCGGTGCTCAGTCTATCTCGCCTTCTTTGATGAGATCAAATTCAGGAATGTTAGGAGCTCAAGGGGCTCCAATGTCTTCGCTTGTGTCTCCTCGTACTCAGTTCAACAACATGAACATTCTAGGAAATATGTCCAATATAACTTCTATGCTGAATCAATCTTTCCCAAATGGAGTTCCAAACCATGGGCTTACTGGTCAAGGAAGTAGCCAGCGTGGAGGAATTGAAACTGGAAGTGACATAGGCCAACTTTCCAGTGTTGGCAATGGAACAAGCTTCCCTAATTCTCCATCCTCATTTGGACAATCAAATATGACGAGTGCGGGTTCCTCTGGTCAAGTTCAGGGTCAACAATTTTCCAACTCTTCTACAAACCAACTGTTGCCAGATCATCAGCATTCTCAACAGCTTGATCCTCAAAATTTCCAACACAGCCAGCAGTCAATGCAACAGTTCTCTTCTCCTCTGAATACACAGCAGCAACAGCATTTTCAATCAATGCGAGGAATAGGTGGAATGGGACCAGTGAAGTTAGAGCCCCAGCTAAATAATGACCAACTTGGACAGCAGCAGCTGCAATCAATGAGGAATCTTCCTCCTGTGAAATTGGAACAACAACAAATTCAAACAATGAGATCTCTGGCACCAGTTAAAATGGAGCCCCAACATTGTGATCAACCGTTATTTTTGCAGCAGCAACAGCAGCAACAACAACAACAACAATTCCTCCACATGTCGAGACAATCTTCGCAGGCTACTGCTGCTCAGATCAATCTTTTGAACCATCACAGGCTTTTACAGCTACAACAACACCAGCAGCAGCAGCAGCAACAACTCTTAAAGGCAATGCCTCAGCAACGGTCTCAATTACCACAACAATTTCAACAGCAAAATATGCCTATGAGGTCTCCTGTGAAACCGGCATATGAACCAGGGATGTGTGCGAGGCGGCTGACACACTACATGTATCAGCAACAACATAGACCTGAAGATAACAACATCGAGTTTTGGAGGAAGTTTGTTGCCGAGTATTATGCTCCTAATGCCAAGAAGAAGTGGTGTGTTTCGATGTATGGAAGTAGCAGACAAACAACTGGAGTTTTCCCTCAGGATGTATGGCACTGCGAAATATGTAATCGGAAACCTGGCCGTGGGTTTGAAGCAACTGTTGAGGTTCTTCCTAGGCTTTTCAAGATAAAGTATGAAAGTGGCACTCTGGAAGAGCTACTTTATGTTGACATGCCCCGTGAATATCATAATTCCTCTGGCCAGATTGTTCTAGACTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATATGCTCTTGGGAATTTTGTGCTCGGCGCCATGAAGAGCTCATCCCCAGAAGATTGTTAATACCTCAGGTTAGTCAGATTGGAGCGGTTGCCCAGAAATACCAGGCTTTAACTCAAAATGCAACACCCAATGCATCTGCTCCAGAGTTACAAAATAATTGCAATATGTTTGTCGCATCAGCCCGTCAATTGGCTAAAGCCCTAGAAGTTCCATTAGTTAATGATTTAGGATATACAAAGAGATATGTGCGCTGCCTACAGATATCAGAAGTGGTAAATAGCATGAAAGACTTGATAGATTACAGCAGAGAAACTGGGACCGGGCCTATGGGTAAGTTCATAGTTTACGTGCTTGATTCTTCATATGCAAGTATAGATATGAATGTGAAAGTTGAGTATTGTTTTATTGAGGAGAGTTCAACTGTTCACATGTACCGTTTCTATGTTGATTCACGATAG
Protein sequence

>Msa0471080

MVPPGPGPPTPIGGAQSISPSLMRSNSGMLGAQGAPMSSLVSPRTQFNNMNILGNMSNITSMLNQSFPNGVPNHGLTGQGSSQRGGIETGSDIGQLSSVGNGTSFPNSPSSFGQSNMTSAGSSGQVQGQQFSNSSTNQLLPDHQHSQQLDPQNFQHSQQSMQQFSSPLNTQQQQHFQSMRGIGGMGPVKLEPQLNNDQLGQQQLQSMRNLPPVKLEQQQIQTMRSLAPVKMEPQHCDQPLFLQQQQQQQQQQQFLHMSRQSSQATAAQINLLNHHRLLQLQQHQQQQQQQLLKAMPQQRSQLPQQFQQQNMPMRSPVKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYYAPNAKKKWCVSMYGSSRQTTGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQIGAVAQKYQALTQNATPNASAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMGKFIVYVLDSSYASIDMNVKVEYCFIEESSTVHMYRFYVDSR*