Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793160 | XP_003592788.3 | 95.092 | 326 | 14 | 2 | 1 | 324 | 1 | 326 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793160 | sp|Q94JV5|NILP2_ARATH | 75.714 | 280 | 64 | 2 | 42 | 318 | 29 | 307 | 3.74e-159 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793160 | A0A396JWP0 | 95.092 | 326 | 14 | 2 | 1 | 324 | 1 | 326 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022230 | Msa0793160 | 0.806118 | 9.607492e-50 | -8.615850e-47 |
| Msa0030320 | Msa0793160 | 0.811817 | 5.790970e-51 | -8.615850e-47 |
| Msa0046000 | Msa0793160 | 0.971831 | 8.708479e-134 | -8.615850e-47 |
| Msa0079320 | Msa0793160 | 0.833951 | 3.970822e-56 | -8.615850e-47 |
| Msa0091300 | Msa0793160 | 0.822736 | 2.018941e-53 | -8.615850e-47 |
| Msa0614060 | Msa0793160 | 0.800524 | 1.384148e-48 | -8.615850e-47 |
| Msa0692710 | Msa0793160 | 0.806340 | 8.628264e-50 | -8.615850e-47 |
| Msa0697230 | Msa0793160 | 0.806213 | 9.176608e-50 | -8.615850e-47 |
| Msa0712100 | Msa0793160 | 0.809516 | 1.820643e-50 | -8.615850e-47 |
| Msa0721650 | Msa0793160 | 0.806648 | 7.427335e-50 | -8.615850e-47 |
| Msa0722660 | Msa0793160 | 0.803286 | 3.748918e-49 | -8.615850e-47 |
| Msa0793160 | Msa0898090 | 0.803502 | 3.380593e-49 | -8.615850e-47 |
| Msa0793160 | Msa0924690 | 0.808861 | 2.515276e-50 | -8.615850e-47 |
| Msa0793160 | Msa0963800 | 0.803916 | 2.774567e-49 | -8.615850e-47 |
| Msa0793160 | Msa1015020 | 0.801975 | 6.985166e-49 | -8.615850e-47 |
| Msa0793160 | Msa1081650 | 0.805835 | 1.101875e-49 | -8.615850e-47 |
| Msa0793160 | Msa1113780 | 0.805406 | 1.355433e-49 | -8.615850e-47 |
| Msa0793160 | Msa1160470 | 0.811015 | 8.649154e-51 | -8.615850e-47 |
| Msa0793160 | Msa1267390 | 0.804778 | 1.834734e-49 | -8.615850e-47 |
| Msa0793160 | Msa1269370 | 0.803958 | 2.718973e-49 | -8.615850e-47 |
| Msa0793160 | Msa1379360 | 0.809075 | 2.263360e-50 | -8.615850e-47 |
| Msa0170690 | Msa0793160 | 0.801222 | 9.968023e-49 | -8.615850e-47 |
| Msa0172110 | Msa0793160 | 0.852953 | 3.289883e-61 | -8.615850e-47 |
| Msa0174800 | Msa0793160 | 0.804573 | 2.024989e-49 | -8.615850e-47 |
| Msa0226580 | Msa0793160 | 0.803599 | 3.227699e-49 | -8.615850e-47 |
| Msa0434840 | Msa0793160 | 0.809476 | 1.857281e-50 | -8.615850e-47 |
| Msa0437850 | Msa0793160 | 0.945430 | 3.097722e-104 | -8.615850e-47 |
| Msa0471080 | Msa0793160 | 0.801192 | 1.011011e-48 | -8.615850e-47 |
| Msa0478750 | Msa0793160 | 0.805311 | 1.419503e-49 | -8.615850e-47 |
| Msa0362440 | Msa0793160 | 0.803742 | 3.015443e-49 | -8.615850e-47 |
| Msa0521190 | Msa0793160 | 0.818956 | 1.495589e-52 | -8.615850e-47 |
| Msa0522830 | Msa0793160 | 0.803391 | 3.564672e-49 | -8.615850e-47 |
| Msa0568810 | Msa0793160 | 0.811018 | 8.635432e-51 | -8.615850e-47 |
| Msa0575970 | Msa0793160 | 0.801018 | 1.097519e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793160 | MtrunA17_Chr1g0213231 | 95.092 | 326 | 14 | 2 | 1 | 324 | 1 | 326 | 0.0 | 624 |
| Msa0793160 | MtrunA17_Chr3g0136101 | 33.213 | 277 | 168 | 7 | 46 | 314 | 75 | 342 | 1.03e-44 | 156 |
| Msa0793160 | MtrunA17_Chr2g0321561 | 26.962 | 293 | 185 | 12 | 46 | 320 | 8 | 289 | 5.56e-23 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793160 | AT4G08790.1 | 75.714 | 280 | 64 | 2 | 42 | 318 | 29 | 307 | 3.80e-160 | 449 |
| Msa0793160 | AT5G12040.1 | 31.734 | 271 | 174 | 5 | 49 | 314 | 90 | 354 | 4.03e-44 | 155 |
| Msa0793160 | AT5G12040.2 | 33.981 | 206 | 127 | 4 | 49 | 249 | 90 | 291 | 2.99e-34 | 127 |
| Msa0793160 | AT2G27450.1 | 26.280 | 293 | 187 | 11 | 46 | 320 | 9 | 290 | 9.27e-23 | 96.7 |
| Msa0793160 | AT2G27450.3 | 26.027 | 219 | 137 | 9 | 116 | 320 | 4 | 211 | 2.27e-14 | 71.6 |
| Msa0793160 | AT5G22300.1 | 24.342 | 304 | 171 | 13 | 33 | 297 | 25 | 308 | 1.40e-12 | 68.2 |
| Msa0793160 | AT5G64370.1 | 23.684 | 304 | 200 | 6 | 29 | 306 | 72 | 369 | 2.78e-11 | 64.3 |
Find 88 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGGATGGACCTATTA+TGG | 0.195841 | 5_3:+5148791 | Msa0793160:CDS |
| ACGAGAGCAGGTGGAGAAAT+TGG | 0.233932 | 5_3:-5148569 | None:intergenic |
| GCTTCTCTATAGTACTTAAT+TGG | 0.237876 | 5_3:+5152292 | Msa0793160:exon |
| ATCCTCAGGATAATCAAATA+AGG | 0.266788 | 5_3:-5152392 | None:intergenic |
| CTTGGAGGCTTTCAAGAAAA+AGG | 0.272049 | 5_3:+5149307 | Msa0793160:CDS |
| TGGATTCTTAAAAGTATATA+TGG | 0.290031 | 5_3:+5148346 | Msa0793160:five_prime_UTR |
| ATGTGCCTGCTCCATGTTAA+AGG | 0.308191 | 5_3:+5152511 | Msa0793160:three_prime_UTR |
| GACAGTCCTATTGGGCGTTT+GGG | 0.332728 | 5_3:+5150813 | Msa0793160:CDS |
| AGACAGTCCTATTGGGCGTT+TGG | 0.340805 | 5_3:+5150812 | Msa0793160:CDS |
| CACATTGATTATCGATCCTT+GGG | 0.353661 | 5_3:+5151517 | Msa0793160:CDS |
| AGGTTTGATGTGGATGTTCC+TGG | 0.357362 | 5_3:+5150360 | Msa0793160:intron |
| TATTAGTATTGCTCAACCTT+TGG | 0.361087 | 5_3:+5148776 | Msa0793160:CDS |
| CAAATGATTACCTTAGCAAT+AGG | 0.366454 | 5_3:-5152079 | None:intergenic |
| ACCCCTTTGTGACTATTGAA+TGG | 0.378528 | 5_3:-5152317 | None:intergenic |
| GTTGCAGTAGACAGTCCTAT+TGG | 0.386112 | 5_3:+5150804 | Msa0793160:CDS |
| AAAGGAAGCCATTTGACTTC+TGG | 0.391324 | 5_3:+5152263 | Msa0793160:CDS |
| GAGCAGTATTGGTCCATAAT+AGG | 0.397134 | 5_3:-5148804 | None:intergenic |
| CTAAGGCCCAAACGCCCAAT+AGG | 0.406011 | 5_3:-5150819 | None:intergenic |
| GATGCAGAGAGTCAAGTATT+TGG | 0.408938 | 5_3:+5149278 | Msa0793160:intron |
| CCCACAAAAGAGAATGCTTC+AGG | 0.418744 | 5_3:-5148735 | None:intergenic |
| GTTTCAGATCGTTTGTCTAC+GGG | 0.424933 | 5_3:+5152001 | Msa0793160:intron |
| CCCCTTTGTGACTATTGAAT+GGG | 0.425634 | 5_3:-5152316 | None:intergenic |
| TTGCAGTAGACAGTCCTATT+GGG | 0.433163 | 5_3:+5150805 | Msa0793160:CDS |
| ACACATTGATTATCGATCCT+TGG | 0.433778 | 5_3:+5151516 | Msa0793160:CDS |
| TCAAAGGAAGCTGCATCAGC+TGG | 0.441637 | 5_3:+5148693 | Msa0793160:intron |
| AGTGACTGGTGAAGCACATT+GGG | 0.449806 | 5_3:+5151071 | Msa0793160:CDS |
| TGTTTCAGATCGTTTGTCTA+CGG | 0.457934 | 5_3:+5152000 | Msa0793160:intron |
| ACCAATACTGCTCTTTAGCC+AGG | 0.458330 | 5_3:+5148814 | Msa0793160:CDS |
| TACTTTGACAAGACGAGAGC+AGG | 0.460604 | 5_3:-5148581 | None:intergenic |
| TCCTCAGGATAATCAAATAA+GGG | 0.460892 | 5_3:-5152391 | None:intergenic |
| TTATTTGATTATCCTGAGGA+TGG | 0.465319 | 5_3:+5152394 | Msa0793160:three_prime_UTR |
| AGTATTTGGTTGTCACTTGG+AGG | 0.473114 | 5_3:+5149292 | Msa0793160:CDS |
| ACTGTTGTTGGTCGCTTACC+AGG | 0.475755 | 5_3:+5151542 | Msa0793160:CDS |
| GGCAACTCGGACTGAATTAG+TGG | 0.475966 | 5_3:-5148512 | None:intergenic |
| GCAGCTTTCCAGAAGTCAAA+TGG | 0.488007 | 5_3:-5152271 | None:intergenic |
| ATGTGGATGTTCCTGGTGGA+AGG | 0.489621 | 5_3:+5150367 | Msa0793160:CDS |
| GTGCATTGTCCAGATACTAT+TGG | 0.490967 | 5_3:+5151029 | Msa0793160:intron |
| TCAAGTATTTGGTTGTCACT+TGG | 0.491926 | 5_3:+5149289 | Msa0793160:CDS |
| CGGAGAGAGAGGCTTGTAAT+CGG | 0.494702 | 5_3:-5148465 | None:intergenic |
| GCCTCTCTCTCCGTCGTCGC+CGG | 0.500716 | 5_3:+5148475 | Msa0793160:CDS |
| ACCCATTCAATAGTCACAAA+GGG | 0.504051 | 5_3:+5152315 | Msa0793160:three_prime_UTR |
| ACCTGGCTAAAGAGCAGTAT+TGG | 0.506049 | 5_3:-5148815 | None:intergenic |
| AGGCTTGTAATCGGCGGCGA+CGG | 0.508563 | 5_3:-5148456 | None:intergenic |
| GTCATAGCTGCTGCACAAGC+TGG | 0.511906 | 5_3:+5151461 | Msa0793160:CDS |
| CGTCGCCGGCGAGTCAATCA+TGG | 0.512033 | 5_3:+5148489 | Msa0793160:CDS |
| CATGATGCGATTGTCGTGTT+GGG | 0.512782 | 5_3:+5148396 | Msa0793160:CDS |
| ACATGATGCGATTGTCGTGT+TGG | 0.515021 | 5_3:+5148395 | Msa0793160:CDS |
| AGTATTGCTCAACCTTTGGA+TGG | 0.516840 | 5_3:+5148780 | Msa0793160:CDS |
| ATTGGAAGCGAGGTCGGTGA+TGG | 0.517816 | 5_3:-5148551 | None:intergenic |
| CAGTTGTTGCGTTTCCAACA+TGG | 0.520574 | 5_3:+5150876 | Msa0793160:CDS |
| ATTTGTAACACCCTTTAACA+TGG | 0.527677 | 5_3:-5152522 | None:intergenic |
| CGCAACAACTGATAAAGCTC+AGG | 0.529790 | 5_3:-5150864 | None:intergenic |
| CTAATACCTGTGCTCCATGT+TGG | 0.546597 | 5_3:-5150890 | None:intergenic |
| TCATTTGAGCTGCGGCAACT+CGG | 0.547963 | 5_3:-5148525 | None:intergenic |
| AACACCCTTTAACATGGAGC+AGG | 0.548062 | 5_3:-5152516 | None:intergenic |
| GATTGACTCGCCGGCGACGA+CGG | 0.552241 | 5_3:-5148485 | None:intergenic |
| TCGTTTGTCTACGGGAATTG+TGG | 0.555672 | 5_3:+5152009 | Msa0793160:CDS |
| TGTGCCTGCTCCATGTTAAA+GGG | 0.557169 | 5_3:+5152512 | Msa0793160:three_prime_UTR |
| TCAAATCATAGCAAACACTA+AGG | 0.560660 | 5_3:-5150836 | None:intergenic |
| AGAGAAGATGCCTATTGCTA+AGG | 0.563526 | 5_3:+5152069 | Msa0793160:CDS |
| AATGACAAAAGAGAAAGTTA+TGG | 0.563585 | 5_3:+5151491 | Msa0793160:CDS |
| GCGTTTCCAACATGGAGCAC+AGG | 0.566309 | 5_3:+5150884 | Msa0793160:CDS |
| TCCCTTATTTGATTATCCTG+AGG | 0.567134 | 5_3:+5152390 | Msa0793160:three_prime_UTR |
| GGAGAAATTGGAAGCGAGGT+CGG | 0.567271 | 5_3:-5148557 | None:intergenic |
| AGTGGCCATGATTGACTCGC+CGG | 0.569921 | 5_3:-5148494 | None:intergenic |
| GCAGCATTCACTAAAGTGAC+TGG | 0.570698 | 5_3:+5151057 | Msa0793160:CDS |
| ACATTGTATACACCATCCTC+AGG | 0.580937 | 5_3:-5152406 | None:intergenic |
| GTCACTTTAGTGAATGCTGC+GGG | 0.582925 | 5_3:-5151054 | None:intergenic |
| AAGTGACTGGTGAAGCACAT+TGG | 0.586083 | 5_3:+5151070 | Msa0793160:CDS |
| GACCCATTCAATAGTCACAA+AGG | 0.598689 | 5_3:+5152314 | Msa0793160:three_prime_UTR |
| GCCGGCGACGACGGAGAGAG+AGG | 0.603051 | 5_3:-5148476 | None:intergenic |
| TGTGGATGTTCCTGGTGGAA+GGG | 0.603877 | 5_3:+5150368 | Msa0793160:CDS |
| CATGTTGTTGTAGATGACAC+TGG | 0.606125 | 5_3:+5149358 | Msa0793160:CDS |
| GAGGATGGTGTATACAATGT+TGG | 0.606536 | 5_3:+5152409 | Msa0793160:three_prime_UTR |
| TTTGACAAGACGAGAGCAGG+TGG | 0.616133 | 5_3:-5148578 | None:intergenic |
| GTAGTCTATTTCAATATGAG+AGG | 0.617071 | 5_3:+5152338 | Msa0793160:three_prime_UTR |
| TCTTTATATACCCTTCCACC+AGG | 0.630907 | 5_3:-5150378 | None:intergenic |
| AGGTGGAGAAATTGGAAGCG+AGG | 0.646802 | 5_3:-5148561 | None:intergenic |
| TCCATAATAGGTCCATCCAA+AGG | 0.658806 | 5_3:-5148792 | None:intergenic |
| AGTCACTTTAGTGAATGCTG+CGG | 0.666530 | 5_3:-5151055 | None:intergenic |
| TGTGTATTAAACAAATGTTG+AGG | 0.680661 | 5_3:-5149337 | None:intergenic |
| ACATTGATTATCGATCCTTG+GGG | 0.682126 | 5_3:+5151518 | Msa0793160:CDS |
| AGAGAGAGGCTTGTAATCGG+CGG | 0.684472 | 5_3:-5148462 | None:intergenic |
| GATGGATGTCATTTGAGCTG+CGG | 0.692126 | 5_3:-5148533 | None:intergenic |
| CATTGATTATCGATCCTTGG+GGG | 0.696086 | 5_3:+5151519 | Msa0793160:CDS |
| CCCATTCAATAGTCACAAAG+GGG | 0.702665 | 5_3:+5152316 | Msa0793160:three_prime_UTR |
| TTTGATGTGGATGTTCCTGG+TGG | 0.706744 | 5_3:+5150363 | Msa0793160:CDS |
| ATGTTGTTGTAGATGACACT+GGG | 0.710242 | 5_3:+5149359 | Msa0793160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAATTAATTAAA+AGG | - | chr5_3:5148662-5148681 | None:intergenic | 0.0% |
| !! | TATATATATATATATTAATA+AGG | - | chr5_3:5148972-5148991 | None:intergenic | 0.0% |
| !!! | ATTTATTTATTTGTTTTCAA+AGG | + | chr5_3:5148677-5148696 | Msa0793160:intron | 10.0% |
| !!! | TTTCAATTAATTTTATTTGA+AGG | + | chr5_3:5150340-5150359 | Msa0793160:intron | 10.0% |
| !!! | ATATATCAACATATATTTTG+AGG | + | chr5_3:5149156-5149175 | Msa0793160:intron | 15.0% |
| !! | TAATTGAAAAACAATTAACT+GGG | - | chr5_3:5150121-5150140 | None:intergenic | 15.0% |
| !! | AAAATTTGAATAGTAAATGT+TGG | - | chr5_3:5151408-5151427 | None:intergenic | 15.0% |
| !! | ATGTACCAAAATAAAAAATA+TGG | + | chr5_3:5152364-5152383 | Msa0793160:three_prime_UTR | 15.0% |
| !! | TGTACCAAAATAAAAAATAT+GGG | + | chr5_3:5152365-5152384 | Msa0793160:three_prime_UTR | 15.0% |
| !!! | TGGATTCTTAAAAGTATATA+TGG | + | chr5_3:5148346-5148365 | Msa0793160:five_prime_UTR | 20.0% |
| !!! | TTTTCGGAAGAAAAAAAAAA+GGG | - | chr5_3:5150008-5150027 | None:intergenic | 20.0% |
| !! | AATTGAAAAACAATTAACTG+GGG | - | chr5_3:5150120-5150139 | None:intergenic | 20.0% |
| !! | CTAATTGAAAAACAATTAAC+TGG | - | chr5_3:5150122-5150141 | None:intergenic | 20.0% |
| !!! | TTTTTTGGGATAAAGAATTA+GGG | - | chr5_3:5150148-5150167 | None:intergenic | 20.0% |
| !! | ACATATAGCATAAGTTATTT+GGG | - | chr5_3:5150260-5150279 | None:intergenic | 20.0% |
| !! | AACATATAGCATAAGTTATT+TGG | - | chr5_3:5150261-5150280 | None:intergenic | 20.0% |
| !!! | AAAAATGAGAAGTTTTGATT+AGG | - | chr5_3:5150486-5150505 | None:intergenic | 20.0% |
| !! | TTCATATCACATATAATTGA+AGG | - | chr5_3:5150715-5150734 | None:intergenic | 20.0% |
| !! | TAAAGAAGAGTAAAAAAAGA+CGG | - | chr5_3:5151963-5151982 | None:intergenic | 20.0% |
| ! | TCATAATAAGTCAATCCAAA+CGG | + | chr5_3:5149084-5149103 | Msa0793160:intron | 25.0% |
| ! | TTATAGTATTAAGATCCGTT+TGG | - | chr5_3:5149102-5149121 | None:intergenic | 25.0% |
| ! | TGTGTATTAAACAAATGTTG+AGG | - | chr5_3:5149340-5149359 | None:intergenic | 25.0% |
| !! | GATAAAGTTAATAGTCTTAC+AGG | - | chr5_3:5149414-5149433 | None:intergenic | 25.0% |
| ! | TTCTTAATCTAATGTGTGTT+TGG | + | chr5_3:5149941-5149960 | Msa0793160:intron | 25.0% |
| !! | GTTTTCGGAAGAAAAAAAAA+AGG | - | chr5_3:5150009-5150028 | None:intergenic | 25.0% |
| ! | ATTGAAAAACAATTAACTGG+GGG | - | chr5_3:5150119-5150138 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGATAAAGAATT+AGG | - | chr5_3:5150149-5150168 | None:intergenic | 25.0% |
| !! | TCTTTCTGTTTGTCTTATTA+TGG | + | chr5_3:5150304-5150323 | Msa0793160:intron | 25.0% |
| !!! | TTTTATTTGAAGGTTTGATG+TGG | + | chr5_3:5150350-5150369 | Msa0793160:intron | 25.0% |
| !! | GAAAGTAATTTTACAGAATC+AGG | + | chr5_3:5150399-5150418 | Msa0793160:CDS | 25.0% |
| !!! | AGAAGTTTTGATTAGGATTA+AGG | - | chr5_3:5150479-5150498 | None:intergenic | 25.0% |
| !! | CAGTTAAAGTTTTCAAATGT+CGG | + | chr5_3:5150594-5150613 | Msa0793160:intron | 25.0% |
| ! | AACACTTATCTATGATATGA+AGG | + | chr5_3:5150738-5150757 | Msa0793160:intron | 25.0% |
| !! | AGGATATTGTTTTCATATCT+TGG | + | chr5_3:5150758-5150777 | Msa0793160:intron | 25.0% |
| !!! | TTGCTTTTCTGCTTAAAATA+TGG | + | chr5_3:5150922-5150941 | Msa0793160:intron | 25.0% |
| !! | TGCTTTTCTGCTTAAAATAT+GGG | + | chr5_3:5150923-5150942 | Msa0793160:intron | 25.0% |
| !!! | TCCTAAACAGCATATTTTAA+GGG | - | chr5_3:5150990-5151009 | None:intergenic | 25.0% |
| !! | ATCCTAAACAGCATATTTTA+AGG | - | chr5_3:5150991-5151010 | None:intergenic | 25.0% |
| ! | GTAAGAATATACATGAAGAT+GGG | - | chr5_3:5151211-5151230 | None:intergenic | 25.0% |
| ! | AGTAAGAATATACATGAAGA+TGG | - | chr5_3:5151212-5151231 | None:intergenic | 25.0% |
| ! | AATGACAAAAGAGAAAGTTA+TGG | + | chr5_3:5151491-5151510 | Msa0793160:CDS | 25.0% |
| ! | GATCTTATATGATATTTCTC+AGG | - | chr5_3:5151701-5151720 | None:intergenic | 25.0% |
| !!! | TCCAATGAAGTTTTTTTTAG+TGG | + | chr5_3:5151864-5151883 | Msa0793160:intron | 25.0% |
| ! | ACCACTAAAAAAAACTTCAT+TGG | - | chr5_3:5151868-5151887 | None:intergenic | 25.0% |
| ! | GATGTATGCATCAATAATAA+AGG | - | chr5_3:5152224-5152243 | None:intergenic | 25.0% |
| !!! | GAGTCCCATATTTTTTATTT+TGG | - | chr5_3:5152372-5152391 | None:intergenic | 25.0% |
| TATTAGTATTGCTCAACCTT+TGG | + | chr5_3:5148776-5148795 | Msa0793160:CDS | 30.0% | |
| TATGAGTCTGTTTGGATAAA+TGG | + | chr5_3:5148875-5148894 | Msa0793160:intron | 30.0% | |
| GTTGATATATAGACACTGTT+TGG | - | chr5_3:5149146-5149165 | None:intergenic | 30.0% | |
| !! | TATATTTTGAGGACCTTACT+CGG | + | chr5_3:5149167-5149186 | Msa0793160:intron | 30.0% |
| AACTCAATATTAACCGAGTA+AGG | - | chr5_3:5149183-5149202 | None:intergenic | 30.0% | |
| !! | TTTCCATCTGAGTATTGATT+TGG | + | chr5_3:5149449-5149468 | Msa0793160:intron | 30.0% |
| ! | TAGTTGGATTTACTGTTTTG+AGG | - | chr5_3:5149726-5149745 | None:intergenic | 30.0% |
| AATTTATCCTCAAAGCAGAA+AGG | + | chr5_3:5149773-5149792 | Msa0793160:intron | 30.0% | |
| CAAATGACAATGAATGTGTT+TGG | - | chr5_3:5150078-5150097 | None:intergenic | 30.0% | |
| ATTTGATAAAAGCCGTAACA+TGG | + | chr5_3:5150093-5150112 | Msa0793160:intron | 30.0% | |
| !!! | TGGGTTTTGAGTTGTTTTTT+GGG | - | chr5_3:5150162-5150181 | None:intergenic | 30.0% |
| !!! | TTGGGTTTTGAGTTGTTTTT+TGG | - | chr5_3:5150163-5150182 | None:intergenic | 30.0% |
| CACTCTAGCTGATTAAATTT+GGG | - | chr5_3:5150181-5150200 | None:intergenic | 30.0% | |
| TCACTCTAGCTGATTAAATT+TGG | - | chr5_3:5150182-5150201 | None:intergenic | 30.0% | |
| !! | GAGTTGATAAACAAGTCAAT+AGG | - | chr5_3:5150238-5150257 | None:intergenic | 30.0% |
| TAAGACAAACAGAAAGAAGT+TGG | - | chr5_3:5150301-5150320 | None:intergenic | 30.0% | |
| ! | GTAATTTTACAGAATCAGGT+AGG | + | chr5_3:5150403-5150422 | Msa0793160:intron | 30.0% |
| TAGGATATTTACTCTTGACA+TGG | + | chr5_3:5150422-5150441 | Msa0793160:intron | 30.0% | |
| ATTTCACCCAAGAAAAATAG+AGG | + | chr5_3:5150530-5150549 | Msa0793160:intron | 30.0% | |
| TTTCACCCAAGAAAAATAGA+GGG | + | chr5_3:5150531-5150550 | Msa0793160:intron | 30.0% | |
| TCAAATCATAGCAAACACTA+AGG | - | chr5_3:5150839-5150858 | None:intergenic | 30.0% | |
| !! | CCTAAACAGCATATTTTAAG+GGG | - | chr5_3:5150989-5151008 | None:intergenic | 30.0% |
| GATTTAATGAATGCCTTATC+AGG | + | chr5_3:5151439-5151458 | Msa0793160:intron | 30.0% | |
| !!! | CTATTTTGACTATCATTACG+AGG | - | chr5_3:5151666-5151685 | None:intergenic | 30.0% |
| AAAAAAAGACGGTATCATTG+TGG | - | chr5_3:5151952-5151971 | None:intergenic | 30.0% | |
| CAAATGATTACCTTAGCAAT+AGG | - | chr5_3:5152082-5152101 | None:intergenic | 30.0% | |
| GCTTCTCTATAGTACTTAAT+TGG | + | chr5_3:5152292-5152311 | Msa0793160:exon | 30.0% | |
| GTAGTCTATTTCAATATGAG+AGG | + | chr5_3:5152338-5152357 | Msa0793160:three_prime_UTR | 30.0% | |
| TCCTCAGGATAATCAAATAA+GGG | - | chr5_3:5152394-5152413 | None:intergenic | 30.0% | |
| ATCCTCAGGATAATCAAATA+AGG | - | chr5_3:5152395-5152414 | None:intergenic | 30.0% | |
| TTATTTGATTATCCTGAGGA+TGG | + | chr5_3:5152394-5152413 | Msa0793160:three_prime_UTR | 30.0% | |
| ATTTGTAACACCCTTTAACA+TGG | - | chr5_3:5152525-5152544 | None:intergenic | 30.0% | |
| GTTCATGATATGAGTCTGTT+TGG | + | chr5_3:5148867-5148886 | Msa0793160:intron | 35.0% | |
| TAAGAGCTTATAATAGCACG+AGG | + | chr5_3:5148919-5148938 | Msa0793160:intron | 35.0% | |
| ACTATGAGCTTATTGACGTA+AGG | - | chr5_3:5148945-5148964 | None:intergenic | 35.0% | |
| TTAACCAACCACCTTTACAA+AGG | + | chr5_3:5149040-5149059 | Msa0793160:intron | 35.0% | |
| AACATAAGCCTTTGTAAAGG+TGG | - | chr5_3:5149051-5149070 | None:intergenic | 35.0% | |
| GCTAACATAAGCCTTTGTAA+AGG | - | chr5_3:5149054-5149073 | None:intergenic | 35.0% | |
| TCAAGTATTTGGTTGTCACT+TGG | + | chr5_3:5149289-5149308 | Msa0793160:CDS | 35.0% | |
| ATGTTGTTGTAGATGACACT+GGG | + | chr5_3:5149359-5149378 | Msa0793160:CDS | 35.0% | |
| ! | CAGGTGTATTTTTCTGTAAG+TGG | - | chr5_3:5149395-5149414 | None:intergenic | 35.0% |
| ACACCAAATCAATACTCAGA+TGG | - | chr5_3:5149455-5149474 | None:intergenic | 35.0% | |
| TGCATGAGAAGAATGAGAAA+TGG | + | chr5_3:5149625-5149644 | Msa0793160:intron | 35.0% | |
| AAATGATCCTTTCTGCTTTG+AGG | - | chr5_3:5149783-5149802 | None:intergenic | 35.0% | |
| ! | AAAATGTTGCTTCTGTGTCA+TGG | - | chr5_3:5149916-5149935 | None:intergenic | 35.0% |
| AACAAGTATTACCGCTATAG+CGG | + | chr5_3:5150210-5150229 | Msa0793160:intron | 35.0% | |
| ! | AGTTGGTTTCTGATTTCAAG+AGG | - | chr5_3:5150284-5150303 | None:intergenic | 35.0% |
| TTACTCTTGACATGGTATCA+AGG | + | chr5_3:5150430-5150449 | Msa0793160:intron | 35.0% | |
| ACATGGTATCAAGGCTAAAT+GGG | + | chr5_3:5150439-5150458 | Msa0793160:intron | 35.0% | |
| !! | AGGTTCCCTCTATTTTTCTT+GGG | - | chr5_3:5150539-5150558 | None:intergenic | 35.0% |
| !! | AAGGTTCCCTCTATTTTTCT+TGG | - | chr5_3:5150540-5150559 | None:intergenic | 35.0% |
| ! | AGTAAGGTTCTTTCTAGGAA+AGG | - | chr5_3:5150559-5150578 | None:intergenic | 35.0% |
| TTTCCTAGAAAGAACCTTAC+TGG | + | chr5_3:5150558-5150577 | Msa0793160:intron | 35.0% | |
| TTTCCAGTAAGGTTCTTTCT+AGG | - | chr5_3:5150564-5150583 | None:intergenic | 35.0% | |
| !! | CTGACTATGTTGTTTCTAAG+AGG | - | chr5_3:5150623-5150642 | None:intergenic | 35.0% |
| TTGAAGGAAACGTATATCGT+TGG | - | chr5_3:5150699-5150718 | None:intergenic | 35.0% | |
| !!! | CATATCTTGGTGATGTTTTC+AGG | + | chr5_3:5150771-5150790 | Msa0793160:intron | 35.0% |
| TTCTGCTTAAAATATGGGAG+TGG | + | chr5_3:5150928-5150947 | Msa0793160:intron | 35.0% | |
| ATCATCTCCAGTGAAAAAAC+TGG | + | chr5_3:5150951-5150970 | Msa0793160:intron | 35.0% | |
| !!! | ATTGTCTCCAGTTTTTTCAC+TGG | - | chr5_3:5150961-5150980 | None:intergenic | 35.0% |
| !! | AAACAGCATATTTTAAGGGG+AGG | - | chr5_3:5150986-5151005 | None:intergenic | 35.0% |
| ! | CCCCTTAAAATATGCTGTTT+AGG | + | chr5_3:5150986-5151005 | Msa0793160:intron | 35.0% |
| GGAGAGTTGAAGAAAGTAAT+TGG | - | chr5_3:5151359-5151378 | None:intergenic | 35.0% | |
| AGTTGTTAGAAACGTTAGTG+TGG | - | chr5_3:5151380-5151399 | None:intergenic | 35.0% | |
| ! | ACACATTGATTATCGATCCT+TGG | + | chr5_3:5151516-5151535 | Msa0793160:CDS | 35.0% |
| ! | CACATTGATTATCGATCCTT+GGG | + | chr5_3:5151517-5151536 | Msa0793160:CDS | 35.0% |
| ! | ACATTGATTATCGATCCTTG+GGG | + | chr5_3:5151518-5151537 | Msa0793160:CDS | 35.0% |
| ! | GAAGTATCAAGTTTCTTACC+TGG | - | chr5_3:5151563-5151582 | None:intergenic | 35.0% |
| TTACGAGGAAGAAAGAAACA+AGG | - | chr5_3:5151651-5151670 | None:intergenic | 35.0% | |
| AAGATCATATGTATGAGCTG+AGG | + | chr5_3:5151715-5151734 | Msa0793160:intron | 35.0% | |
| TGTTTCAGATCGTTTGTCTA+CGG | + | chr5_3:5152000-5152019 | Msa0793160:intron | 35.0% | |
| !! | TTCCATTCTCTAGTATTGGT+CGG | - | chr5_3:5152121-5152140 | None:intergenic | 35.0% |
| ACCAATACTAGAGAATGGAA+TGG | + | chr5_3:5152121-5152140 | Msa0793160:intron | 35.0% | |
| TCCATTCCATTCTCTAGTAT+TGG | - | chr5_3:5152125-5152144 | None:intergenic | 35.0% | |
| ACCCATTCAATAGTCACAAA+GGG | + | chr5_3:5152315-5152334 | Msa0793160:three_prime_UTR | 35.0% | |
| ! | TCCCTTATTTGATTATCCTG+AGG | + | chr5_3:5152390-5152409 | Msa0793160:three_prime_UTR | 35.0% |
| !! | TCCTGAAGCATTCTCTTTTG+TGG | + | chr5_3:5148734-5148753 | Msa0793160:CDS | 40.0% |
| !! | CCTGAAGCATTCTCTTTTGT+GGG | + | chr5_3:5148735-5148754 | Msa0793160:CDS | 40.0% |
| ! | TCTTTTGTGGGTGCTAAAGA+TGG | + | chr5_3:5148747-5148766 | Msa0793160:CDS | 40.0% |
| AGTATTGCTCAACCTTTGGA+TGG | + | chr5_3:5148780-5148799 | Msa0793160:CDS | 40.0% | |
| ACCTTTGGATGGACCTATTA+TGG | + | chr5_3:5148791-5148810 | Msa0793160:CDS | 40.0% | |
| TCCATAATAGGTCCATCCAA+AGG | - | chr5_3:5148795-5148814 | None:intergenic | 40.0% | |
| !! | GAGCAGTATTGGTCCATAAT+AGG | - | chr5_3:5148807-5148826 | None:intergenic | 40.0% |
| TAAAAGCAAGCAAGCAAACC+TGG | - | chr5_3:5148835-5148854 | None:intergenic | 40.0% | |
| TAAGCCTTTGTAAAGGTGGT+TGG | - | chr5_3:5149047-5149066 | None:intergenic | 40.0% | |
| GATGCAGAGAGTCAAGTATT+TGG | + | chr5_3:5149278-5149297 | Msa0793160:intron | 40.0% | |
| ! | AGTATTTGGTTGTCACTTGG+AGG | + | chr5_3:5149292-5149311 | Msa0793160:CDS | 40.0% |
| CTTGGAGGCTTTCAAGAAAA+AGG | + | chr5_3:5149307-5149326 | Msa0793160:CDS | 40.0% | |
| CATGTTGTTGTAGATGACAC+TGG | + | chr5_3:5149358-5149377 | Msa0793160:CDS | 40.0% | |
| GCAACACAAACGCAAGTAAA+CGG | + | chr5_3:5149553-5149572 | Msa0793160:intron | 40.0% | |
| ACGGTTGGAACAAGAGATTA+TGG | + | chr5_3:5149572-5149591 | Msa0793160:intron | 40.0% | |
| ACGAAGAAGTAGAGTAAGAG+AGG | + | chr5_3:5149597-5149616 | Msa0793160:intron | 40.0% | |
| CGAAGAAGTAGAGTAAGAGA+GGG | + | chr5_3:5149598-5149617 | Msa0793160:intron | 40.0% | |
| GAGAAGAATGAGAAATGGAG+CGG | + | chr5_3:5149630-5149649 | Msa0793160:intron | 40.0% | |
| AGAAGAATGAGAAATGGAGC+GGG | + | chr5_3:5149631-5149650 | Msa0793160:intron | 40.0% | |
| ATCCAACTACTCTGTGTGTT+TGG | + | chr5_3:5149737-5149756 | Msa0793160:intron | 40.0% | |
| TCCAACTACTCTGTGTGTTT+GGG | + | chr5_3:5149738-5149757 | Msa0793160:intron | 40.0% | |
| ! | GGAGCTCTCAATTGTGTTTT+CGG | - | chr5_3:5150024-5150043 | None:intergenic | 40.0% |
| TCTTTATATACCCTTCCACC+AGG | - | chr5_3:5150381-5150400 | None:intergenic | 40.0% | |
| GACATGGTATCAAGGCTAAA+TGG | + | chr5_3:5150438-5150457 | Msa0793160:intron | 40.0% | |
| GAACCTTACTGGAAAATCAG+AGG | + | chr5_3:5150569-5150588 | Msa0793160:intron | 40.0% | |
| ! | GAACCTCTGATTTTCCAGTA+AGG | - | chr5_3:5150575-5150594 | None:intergenic | 40.0% |
| TTGCAGTAGACAGTCCTATT+GGG | + | chr5_3:5150805-5150824 | Msa0793160:CDS | 40.0% | |
| GTGCATTGTCCAGATACTAT+TGG | + | chr5_3:5151029-5151048 | Msa0793160:intron | 40.0% | |
| ! | AGTCACTTTAGTGAATGCTG+CGG | - | chr5_3:5151058-5151077 | None:intergenic | 40.0% |
| AAGATGGGAATGATGAAAGC+AGG | - | chr5_3:5151196-5151215 | None:intergenic | 40.0% | |
| ! | CATTGATTATCGATCCTTGG+GGG | + | chr5_3:5151519-5151538 | Msa0793160:CDS | 40.0% |
| GAGGAAGAAAGAAACAAGGA+AGG | - | chr5_3:5151647-5151666 | None:intergenic | 40.0% | |
| TGTAATACACCCCACTTAGT+GGG | - | chr5_3:5151814-5151833 | None:intergenic | 40.0% | |
| GTTTCAGATCGTTTGTCTAC+GGG | + | chr5_3:5152001-5152020 | Msa0793160:intron | 40.0% | |
| AGAGAAGATGCCTATTGCTA+AGG | + | chr5_3:5152069-5152088 | Msa0793160:CDS | 40.0% | |
| !! | TCCATTCTCTAGTATTGGTC+GGG | - | chr5_3:5152120-5152139 | None:intergenic | 40.0% |
| ! | GTACCTTTTCGTTTCAGCAA+AGG | + | chr5_3:5152245-5152264 | Msa0793160:intron | 40.0% |
| CTTCCTTTGCTGAAACGAAA+AGG | - | chr5_3:5152251-5152270 | None:intergenic | 40.0% | |
| ! | AAAGGAAGCCATTTGACTTC+TGG | + | chr5_3:5152263-5152282 | Msa0793160:CDS | 40.0% |
| GACCCATTCAATAGTCACAA+AGG | + | chr5_3:5152314-5152333 | Msa0793160:three_prime_UTR | 40.0% | |
| CCCCTTTGTGACTATTGAAT+GGG | - | chr5_3:5152319-5152338 | None:intergenic | 40.0% | |
| CCCATTCAATAGTCACAAAG+GGG | + | chr5_3:5152316-5152335 | Msa0793160:three_prime_UTR | 40.0% | |
| ACCCCTTTGTGACTATTGAA+TGG | - | chr5_3:5152320-5152339 | None:intergenic | 40.0% | |
| ACATTGTATACACCATCCTC+AGG | - | chr5_3:5152409-5152428 | None:intergenic | 40.0% | |
| GAGGATGGTGTATACAATGT+TGG | + | chr5_3:5152409-5152428 | Msa0793160:three_prime_UTR | 40.0% | |
| ACATGATGCGATTGTCGTGT+TGG | + | chr5_3:5148395-5148414 | Msa0793160:CDS | 45.0% | |
| CATGATGCGATTGTCGTGTT+GGG | + | chr5_3:5148396-5148415 | Msa0793160:CDS | 45.0% | |
| ! | GATGGATGTCATTTGAGCTG+CGG | - | chr5_3:5148536-5148555 | None:intergenic | 45.0% |
| TACTTTGACAAGACGAGAGC+AGG | - | chr5_3:5148584-5148603 | None:intergenic | 45.0% | |
| CCCACAAAAGAGAATGCTTC+AGG | - | chr5_3:5148738-5148757 | None:intergenic | 45.0% | |
| ACCAATACTGCTCTTTAGCC+AGG | + | chr5_3:5148814-5148833 | Msa0793160:CDS | 45.0% | |
| ACCTGGCTAAAGAGCAGTAT+TGG | - | chr5_3:5148818-5148837 | None:intergenic | 45.0% | |
| CACAAACGCAAGTAAACGGT+TGG | + | chr5_3:5149557-5149576 | Msa0793160:intron | 45.0% | |
| GAAGAATGAGAAATGGAGCG+GGG | + | chr5_3:5149632-5149651 | Msa0793160:intron | 45.0% | |
| AAGAATGAGAAATGGAGCGG+GGG | + | chr5_3:5149633-5149652 | Msa0793160:intron | 45.0% | |
| ACCCAAACACACAGAGTAGT+TGG | - | chr5_3:5149742-5149761 | None:intergenic | 45.0% | |
| CAATTGAGAGCTCCATACAG+AGG | + | chr5_3:5150030-5150049 | Msa0793160:intron | 45.0% | |
| AAGAGCTCCTAACCTCTGTA+TGG | - | chr5_3:5150045-5150064 | None:intergenic | 45.0% | |
| ATTAACTGGGGGCCATGTTA+CGG | - | chr5_3:5150108-5150127 | None:intergenic | 45.0% | |
| AGGTTTGATGTGGATGTTCC+TGG | + | chr5_3:5150360-5150379 | Msa0793160:intron | 45.0% | |
| TTTGATGTGGATGTTCCTGG+TGG | + | chr5_3:5150363-5150382 | Msa0793160:CDS | 45.0% | |
| !!! | CTTGGTGATGTTTTCAGGCA+AGG | + | chr5_3:5150776-5150795 | Msa0793160:intron | 45.0% |
| GTTGCAGTAGACAGTCCTAT+TGG | + | chr5_3:5150804-5150823 | Msa0793160:CDS | 45.0% | |
| CGCAACAACTGATAAAGCTC+AGG | - | chr5_3:5150867-5150886 | None:intergenic | 45.0% | |
| CAGTTGTTGCGTTTCCAACA+TGG | + | chr5_3:5150876-5150895 | Msa0793160:CDS | 45.0% | |
| CTAATACCTGTGCTCCATGT+TGG | - | chr5_3:5150893-5150912 | None:intergenic | 45.0% | |
| ! | GTCACTTTAGTGAATGCTGC+GGG | - | chr5_3:5151057-5151076 | None:intergenic | 45.0% |
| GCAGCATTCACTAAAGTGAC+TGG | + | chr5_3:5151057-5151076 | Msa0793160:CDS | 45.0% | |
| AAGTGACTGGTGAAGCACAT+TGG | + | chr5_3:5151070-5151089 | Msa0793160:CDS | 45.0% | |
| AGTGACTGGTGAAGCACATT+GGG | + | chr5_3:5151071-5151090 | Msa0793160:CDS | 45.0% | |
| CCTAGCAATGCTTCTCTTCT+CGG | + | chr5_3:5151154-5151173 | Msa0793160:intron | 45.0% | |
| ACAGGACAGCAAAAACAACC+AGG | + | chr5_3:5151782-5151801 | Msa0793160:intron | 45.0% | |
| CTGTAATACACCCCACTTAG+TGG | - | chr5_3:5151815-5151834 | None:intergenic | 45.0% | |
| CACTAAGTGGGGTGTATTAC+AGG | + | chr5_3:5151813-5151832 | Msa0793160:intron | 45.0% | |
| AACAGTTTGAATCTCCAGCG+AGG | - | chr5_3:5151902-5151921 | None:intergenic | 45.0% | |
| TCGTTTGTCTACGGGAATTG+TGG | + | chr5_3:5152009-5152028 | Msa0793160:CDS | 45.0% | |
| ACCCGACCAATACTAGAGAA+TGG | + | chr5_3:5152116-5152135 | Msa0793160:intron | 45.0% | |
| GCAGCTTTCCAGAAGTCAAA+TGG | - | chr5_3:5152274-5152293 | None:intergenic | 45.0% | |
| ATGTGCCTGCTCCATGTTAA+AGG | + | chr5_3:5152511-5152530 | Msa0793160:three_prime_UTR | 45.0% | |
| TGTGCCTGCTCCATGTTAAA+GGG | + | chr5_3:5152512-5152531 | Msa0793160:three_prime_UTR | 45.0% | |
| AACACCCTTTAACATGGAGC+AGG | - | chr5_3:5152519-5152538 | None:intergenic | 45.0% | |
| AGAGAGAGGCTTGTAATCGG+CGG | - | chr5_3:5148465-5148484 | None:intergenic | 50.0% | |
| CGGAGAGAGAGGCTTGTAAT+CGG | - | chr5_3:5148468-5148487 | None:intergenic | 50.0% | |
| GGCAACTCGGACTGAATTAG+TGG | - | chr5_3:5148515-5148534 | None:intergenic | 50.0% | |
| TCATTTGAGCTGCGGCAACT+CGG | - | chr5_3:5148528-5148547 | None:intergenic | 50.0% | |
| GGAGAAATTGGAAGCGAGGT+CGG | - | chr5_3:5148560-5148579 | None:intergenic | 50.0% | |
| AGGTGGAGAAATTGGAAGCG+AGG | - | chr5_3:5148564-5148583 | None:intergenic | 50.0% | |
| ACGAGAGCAGGTGGAGAAAT+TGG | - | chr5_3:5148572-5148591 | None:intergenic | 50.0% | |
| TTTGACAAGACGAGAGCAGG+TGG | - | chr5_3:5148581-5148600 | None:intergenic | 50.0% | |
| TCAAAGGAAGCTGCATCAGC+TGG | + | chr5_3:5148693-5148712 | Msa0793160:intron | 50.0% | |
| GAGAGCTCCATACAGAGGTT+AGG | + | chr5_3:5150035-5150054 | Msa0793160:intron | 50.0% | |
| GTCAATAGGCTCCGCTATAG+CGG | - | chr5_3:5150224-5150243 | None:intergenic | 50.0% | |
| ATGTGGATGTTCCTGGTGGA+AGG | + | chr5_3:5150367-5150386 | Msa0793160:CDS | 50.0% | |
| TGTGGATGTTCCTGGTGGAA+GGG | + | chr5_3:5150368-5150387 | Msa0793160:CDS | 50.0% | |
| AGACAGTCCTATTGGGCGTT+TGG | + | chr5_3:5150812-5150831 | Msa0793160:CDS | 50.0% | |
| GACAGTCCTATTGGGCGTTT+GGG | + | chr5_3:5150813-5150832 | Msa0793160:CDS | 50.0% | |
| !! | CCGAGAAGAGAAGCATTGCT+AGG | - | chr5_3:5151157-5151176 | None:intergenic | 50.0% |
| GCAGCAGCTATGACCTGATA+AGG | - | chr5_3:5151455-5151474 | None:intergenic | 50.0% | |
| ACTGTTGTTGGTCGCTTACC+AGG | + | chr5_3:5151542-5151561 | Msa0793160:CDS | 50.0% | |
| GTATGAGCTGAGGCCTCATA+TGG | + | chr5_3:5151725-5151744 | Msa0793160:intron | 50.0% | |
| GCCTCATATGGCTTACCTCA+GGG | + | chr5_3:5151737-5151756 | Msa0793160:intron | 50.0% | |
| TCCCTGAGGTAAGCCATATG+AGG | - | chr5_3:5151741-5151760 | None:intergenic | 50.0% | |
| TATGGCTTACCTCAGGGAGA+TGG | + | chr5_3:5151743-5151762 | Msa0793160:intron | 50.0% | |
| ATGGCTTACCTCAGGGAGAT+GGG | + | chr5_3:5151744-5151763 | Msa0793160:intron | 50.0% | |
| ! | GGGGAAGGAGTGTGTATTAC+AGG | + | chr5_3:5151764-5151783 | Msa0793160:intron | 50.0% |
| ! | CAGGCCTTTTCCCACTAAGT+GGG | + | chr5_3:5151801-5151820 | Msa0793160:intron | 50.0% |
| ! | AGGCCTTTTCCCACTAAGTG+GGG | + | chr5_3:5151802-5151821 | Msa0793160:intron | 50.0% |
| ACACCCCACTTAGTGGGAAA+AGG | - | chr5_3:5151808-5151827 | None:intergenic | 50.0% | |
| GTGGGGTGTATTACAGGAGA+AGG | + | chr5_3:5151819-5151838 | Msa0793160:intron | 50.0% | |
| GGTGATTTCATTCTCCTCGC+TGG | + | chr5_3:5151885-5151904 | Msa0793160:intron | 50.0% | |
| !! | AGTGGCCATGATTGACTCGC+CGG | - | chr5_3:5148497-5148516 | None:intergenic | 55.0% |
| ATTGGAAGCGAGGTCGGTGA+TGG | - | chr5_3:5148554-5148573 | None:intergenic | 55.0% | |
| AATGAGAAATGGAGCGGGGG+TGG | + | chr5_3:5149636-5149655 | Msa0793160:intron | 55.0% | |
| ATGAGAAATGGAGCGGGGGT+GGG | + | chr5_3:5149637-5149656 | Msa0793160:intron | 55.0% | |
| CTAAGGCCCAAACGCCCAAT+AGG | - | chr5_3:5150822-5150841 | None:intergenic | 55.0% | |
| GCGTTTCCAACATGGAGCAC+AGG | + | chr5_3:5150884-5150903 | Msa0793160:CDS | 55.0% | |
| CTGCGGGCACCAATAGTATC+TGG | - | chr5_3:5151041-5151060 | None:intergenic | 55.0% | |
| GTCATAGCTGCTGCACAAGC+TGG | + | chr5_3:5151461-5151480 | Msa0793160:CDS | 55.0% | |
| GATCCTTGGGGGACTGTTGT+TGG | + | chr5_3:5151530-5151549 | Msa0793160:CDS | 55.0% | |
| GGCCTCATATGGCTTACCTC+AGG | + | chr5_3:5151736-5151755 | Msa0793160:intron | 55.0% | |
| TGGCTTACCTCAGGGAGATG+GGG | + | chr5_3:5151745-5151764 | Msa0793160:intron | 55.0% | |
| TTACCTCAGGGAGATGGGGA+AGG | + | chr5_3:5151749-5151768 | Msa0793160:intron | 55.0% | |
| CCACTTAGTGGGAAAAGGCC+TGG | - | chr5_3:5151803-5151822 | None:intergenic | 55.0% | |
| ! | CCAGGCCTTTTCCCACTAAG+TGG | + | chr5_3:5151800-5151819 | Msa0793160:intron | 55.0% |
| AGGCTTGTAATCGGCGGCGA+CGG | - | chr5_3:5148459-5148478 | None:intergenic | 60.0% | |
| TGAGAAATGGAGCGGGGGTG+GGG | + | chr5_3:5149638-5149657 | Msa0793160:intron | 60.0% | |
| CGACCAACAACAGTCCCCCA+AGG | - | chr5_3:5151536-5151555 | None:intergenic | 60.0% | |
| ACTCCTTCCCCATCTCCCTG+AGG | - | chr5_3:5151755-5151774 | None:intergenic | 60.0% | |
| !! | GATTGACTCGCCGGCGACGA+CGG | - | chr5_3:5148488-5148507 | None:intergenic | 65.0% |
| CGTCGCCGGCGAGTCAATCA+TGG | + | chr5_3:5148489-5148508 | Msa0793160:CDS | 65.0% | |
| GAGAAATGGAGCGGGGGTGG+GGG | + | chr5_3:5149639-5149658 | Msa0793160:intron | 65.0% | |
| GCCTCTCTCTCCGTCGTCGC+CGG | + | chr5_3:5148475-5148494 | Msa0793160:CDS | 70.0% | |
| AATGGAGCGGGGGTGGGGGT+TGG | + | chr5_3:5149643-5149662 | Msa0793160:intron | 70.0% | |
| GCCGGCGACGACGGAGAGAG+AGG | - | chr5_3:5148479-5148498 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5148346 | 5152547 | 5148346 | ID=Msa0793160;Name=Msa0793160 |
| chr5_3 | mRNA | 5148346 | 5152547 | 5148346 | ID=Msa0793160-mRNA-1;Parent=Msa0793160;Name=Msa0793160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39|1|1|1|0.87|1|9|244|324 |
| chr5_3 | exon | 5148346 | 5148600 | 5148346 | ID=Msa0793160-mRNA-1:exon:1932;Parent=Msa0793160-mRNA-1 |
| chr5_3 | exon | 5148699 | 5148835 | 5148699 | ID=Msa0793160-mRNA-1:exon:1933;Parent=Msa0793160-mRNA-1 |
| chr5_3 | exon | 5149285 | 5149413 | 5149285 | ID=Msa0793160-mRNA-1:exon:1934;Parent=Msa0793160-mRNA-1 |
| chr5_3 | exon | 5150362 | 5150420 | 5150362 | ID=Msa0793160-mRNA-1:exon:1935;Parent=Msa0793160-mRNA-1 |
| chr5_3 | exon | 5150793 | 5150905 | 5150793 | ID=Msa0793160-mRNA-1:exon:1936;Parent=Msa0793160-mRNA-1 |
| chr5_3 | exon | 5151042 | 5151134 | 5151042 | ID=Msa0793160-mRNA-1:exon:1937;Parent=Msa0793160-mRNA-1 |
| chr5_3 | exon | 5151461 | 5151563 | 5151461 | ID=Msa0793160-mRNA-1:exon:1938;Parent=Msa0793160-mRNA-1 |
| chr5_3 | exon | 5152008 | 5152090 | 5152008 | ID=Msa0793160-mRNA-1:exon:1939;Parent=Msa0793160-mRNA-1 |
| chr5_3 | exon | 5152262 | 5152547 | 5152262 | ID=Msa0793160-mRNA-1:exon:1940;Parent=Msa0793160-mRNA-1 |
| chr5_3 | five_prime_UTR | 5148346 | 5148384 | 5148346 | ID=Msa0793160-mRNA-1:five_prime_utr;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5148385 | 5148600 | 5148385 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5148699 | 5148835 | 5148699 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5149285 | 5149413 | 5149285 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5150362 | 5150420 | 5150362 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5150793 | 5150905 | 5150793 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5151042 | 5151134 | 5151042 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5151461 | 5151563 | 5151461 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5152008 | 5152090 | 5152008 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | CDS | 5152262 | 5152303 | 5152262 | ID=Msa0793160-mRNA-1:cds;Parent=Msa0793160-mRNA-1 |
| chr5_3 | three_prime_UTR | 5152304 | 5152547 | 5152304 | ID=Msa0793160-mRNA-1:three_prime_utr;Parent=Msa0793160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
