Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046000 | sp|Q94JV5|NILP2_ARATH | 75.714 | 280 | 64 | 2 | 38 | 314 | 29 | 307 | 2.33e-159 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007570 | Msa0046000 | 0.808626 | 2.824360e-50 | -8.615850e-47 |
| Msa0021570 | Msa0046000 | 0.807054 | 6.096870e-50 | -8.615850e-47 |
| Msa0022230 | Msa0046000 | 0.809508 | 1.827458e-50 | -8.615850e-47 |
| Msa0028940 | Msa0046000 | 0.811512 | 6.747128e-51 | -8.615850e-47 |
| Msa0039780 | Msa0046000 | 0.805629 | 1.217083e-49 | -8.615850e-47 |
| Msa0042500 | Msa0046000 | 0.802620 | 5.144710e-49 | -8.615850e-47 |
| Msa0046000 | Msa0050850 | 0.809395 | 1.933259e-50 | -8.615850e-47 |
| Msa0046000 | Msa0079320 | 0.843578 | 1.285591e-58 | -8.615850e-47 |
| Msa0046000 | Msa0087370 | 0.803693 | 3.085600e-49 | -8.615850e-47 |
| Msa0046000 | Msa0091300 | 0.817934 | 2.548483e-52 | -8.615850e-47 |
| Msa0046000 | Msa0093830 | 0.800259 | 1.567572e-48 | -8.615850e-47 |
| Msa0046000 | Msa0114960 | 0.811783 | 5.890444e-51 | -8.615850e-47 |
| Msa0046000 | Msa0118250 | 0.813868 | 2.057969e-51 | -8.615850e-47 |
| Msa0046000 | Msa0121080 | 0.802706 | 4.940176e-49 | -8.615850e-47 |
| Msa0046000 | Msa0128840 | 0.814095 | 1.833971e-51 | -8.615850e-47 |
| Msa0046000 | Msa0138340 | 0.808185 | 3.507146e-50 | -8.615850e-47 |
| Msa0046000 | Msa0147960 | 0.806031 | 1.002067e-49 | -8.615850e-47 |
| Msa0046000 | Msa0163170 | 0.811920 | 5.498742e-51 | -8.615850e-47 |
| Msa0046000 | Msa0164580 | 0.802120 | 6.524022e-49 | -8.615850e-47 |
| Msa0046000 | Msa0170690 | 0.821225 | 4.522114e-53 | -8.615850e-47 |
| Msa0046000 | Msa0172110 | 0.850948 | 1.220139e-60 | -8.615850e-47 |
| Msa0046000 | Msa0174800 | 0.809040 | 2.303060e-50 | -8.615850e-47 |
| Msa0046000 | Msa0186380 | 0.802175 | 6.356345e-49 | -8.615850e-47 |
| Msa0046000 | Msa0192890 | -0.803599 | 3.228040e-49 | -8.615850e-47 |
| Msa0046000 | Msa0194750 | 0.802273 | 6.067227e-49 | -8.615850e-47 |
| Msa0046000 | Msa0195850 | 0.814399 | 1.571621e-51 | -8.615850e-47 |
| Msa0046000 | Msa0196620 | 0.815226 | 1.030263e-51 | -8.615850e-47 |
| Msa0046000 | Msa0209590 | 0.802776 | 4.777282e-49 | -8.615850e-47 |
| Msa0046000 | Msa0224980 | 0.804161 | 2.466883e-49 | -8.615850e-47 |
| Msa0046000 | Msa0225030 | 0.811351 | 7.310372e-51 | -8.615850e-47 |
| Msa0046000 | Msa0238530 | 0.801309 | 9.567192e-49 | -8.615850e-47 |
| Msa0046000 | Msa0246470 | 0.811062 | 8.447722e-51 | -8.615850e-47 |
| Msa0046000 | Msa0249670 | 0.814889 | 1.224393e-51 | -8.615850e-47 |
| Msa0046000 | Msa0256120 | 0.800115 | 1.676449e-48 | -8.615850e-47 |
| Msa0046000 | Msa0269660 | 0.804525 | 2.072072e-49 | -8.615850e-47 |
| Msa0046000 | Msa0275260 | 0.818652 | 1.752867e-52 | -8.615850e-47 |
| Msa0046000 | Msa0304070 | 0.800508 | 1.394932e-48 | -8.615850e-47 |
| Msa0046000 | Msa0305810 | 0.809267 | 2.059179e-50 | -8.615850e-47 |
| Msa0046000 | Msa0315760 | 0.825558 | 4.391350e-54 | -8.615850e-47 |
| Msa0046000 | Msa0327990 | 0.805793 | 1.124653e-49 | -8.615850e-47 |
| Msa0046000 | Msa0341710 | 0.807506 | 4.890421e-50 | -8.615850e-47 |
| Msa0046000 | Msa0371050 | 0.804701 | 1.903772e-49 | -8.615850e-47 |
| Msa0046000 | Msa0378530 | 0.802496 | 5.458464e-49 | -8.615850e-47 |
| Msa0046000 | Msa0388000 | 0.806842 | 6.759434e-50 | -8.615850e-47 |
| Msa0046000 | Msa0390350 | 0.802201 | 6.277173e-49 | -8.615850e-47 |
| Msa0046000 | Msa0429500 | 0.804537 | 2.059578e-49 | -8.615850e-47 |
| Msa0046000 | Msa0431310 | 0.822036 | 2.935732e-53 | -8.615850e-47 |
| Msa0046000 | Msa0434840 | 0.803502 | 3.381035e-49 | -8.615850e-47 |
| Msa0046000 | Msa0437850 | 0.917087 | 8.129379e-86 | -8.615850e-47 |
| Msa0046000 | Msa0458130 | 0.800882 | 1.169734e-48 | -8.615850e-47 |
| Msa0046000 | Msa0474220 | 0.802610 | 5.169388e-49 | -8.615850e-47 |
| Msa0046000 | Msa0476490 | 0.804570 | 2.027694e-49 | -8.615850e-47 |
| Msa0046000 | Msa0478750 | 0.812749 | 3.624985e-51 | -8.615850e-47 |
| Msa0046000 | Msa0481580 | 0.811560 | 6.586232e-51 | -8.615850e-47 |
| Msa0046000 | Msa0484890 | 0.801082 | 1.064700e-48 | -8.615850e-47 |
| Msa0046000 | Msa0508620 | 0.801836 | 7.461803e-49 | -8.615850e-47 |
| Msa0046000 | Msa0508660 | 0.804114 | 2.523062e-49 | -8.615850e-47 |
| Msa0046000 | Msa0515400 | 0.802464 | 5.541293e-49 | -8.615850e-47 |
| Msa0046000 | Msa0521190 | 0.830001 | 3.754632e-55 | -8.615850e-47 |
| Msa0046000 | Msa0522830 | 0.809374 | 1.953309e-50 | -8.615850e-47 |
| Msa0046000 | Msa0523400 | 0.801061 | 1.075335e-48 | -8.615850e-47 |
| Msa0046000 | Msa0527210 | 0.805180 | 1.512051e-49 | -8.615850e-47 |
| Msa0046000 | Msa0527420 | 0.801897 | 7.247182e-49 | -8.615850e-47 |
| Msa0046000 | Msa0537960 | 0.806367 | 8.513014e-50 | -8.615850e-47 |
| Msa0046000 | Msa0538100 | 0.807450 | 5.023975e-50 | -8.615850e-47 |
| Msa0046000 | Msa0548230 | 0.809114 | 2.220132e-50 | -8.615850e-47 |
| Msa0046000 | Msa0550820 | 0.800251 | 1.572966e-48 | -8.615850e-47 |
| Msa0046000 | Msa0554700 | 0.803507 | 3.372913e-49 | -8.615850e-47 |
| Msa0046000 | Msa0558800 | 0.802026 | 6.818825e-49 | -8.615850e-47 |
| Msa0046000 | Msa0560010 | 0.817490 | 3.209596e-52 | -8.615850e-47 |
| Msa0046000 | Msa0562680 | 0.808847 | 2.532371e-50 | -8.615850e-47 |
| Msa0046000 | Msa0565930 | 0.823353 | 1.450278e-53 | -8.615850e-47 |
| Msa0046000 | Msa0567190 | 0.816286 | 5.980766e-52 | -8.615850e-47 |
| Msa0046000 | Msa0568810 | 0.818769 | 1.649056e-52 | -8.615850e-47 |
| Msa0046000 | Msa0575970 | 0.810398 | 1.175990e-50 | -8.615850e-47 |
| Msa0046000 | Msa0578400 | 0.805358 | 1.387598e-49 | -8.615850e-47 |
| Msa0046000 | Msa0583810 | 0.817194 | 3.742805e-52 | -8.615850e-47 |
| Msa0046000 | Msa0585770 | 0.806411 | 8.332789e-50 | -8.615850e-47 |
| Msa0046000 | Msa0585810 | 0.816532 | 5.268715e-52 | -8.615850e-47 |
| Msa0046000 | Msa0587060 | 0.805248 | 1.463277e-49 | -8.615850e-47 |
| Msa0046000 | Msa0614060 | 0.815613 | 8.453069e-52 | -8.615850e-47 |
| Msa0046000 | Msa0621870 | 0.809726 | 1.640718e-50 | -8.615850e-47 |
| Msa0046000 | Msa0623350 | 0.823938 | 1.057804e-53 | -8.615850e-47 |
| Msa0046000 | Msa0632040 | 0.804100 | 2.539862e-49 | -8.615850e-47 |
| Msa0046000 | Msa0638550 | 0.813330 | 2.702992e-51 | -8.615850e-47 |
| Msa0046000 | Msa0648410 | 0.803070 | 4.154279e-49 | -8.615850e-47 |
| Msa0046000 | Msa0660160 | 0.824209 | 9.135187e-54 | -8.615850e-47 |
| Msa0046000 | Msa0662670 | 0.802772 | 4.788209e-49 | -8.615850e-47 |
| Msa0046000 | Msa0663630 | 0.814764 | 1.304694e-51 | -8.615850e-47 |
| Msa0046000 | Msa0666380 | 0.820335 | 7.243656e-53 | -8.615850e-47 |
| Msa0046000 | Msa0677160 | 0.813253 | 2.811004e-51 | -8.615850e-47 |
| Msa0046000 | Msa0690920 | 0.808577 | 2.891963e-50 | -8.615850e-47 |
| Msa0046000 | Msa0692710 | 0.811115 | 8.225059e-51 | -8.615850e-47 |
| Msa0046000 | Msa0697230 | 0.820100 | 8.196921e-53 | -8.615850e-47 |
| Msa0046000 | Msa0703620 | 0.819547 | 1.096775e-52 | -8.615850e-47 |
| Msa0046000 | Msa0708450 | 0.815244 | 1.021181e-51 | -8.615850e-47 |
| Msa0046000 | Msa0708870 | 0.801890 | 7.273131e-49 | -8.615850e-47 |
| Msa0046000 | Msa0712100 | 0.822229 | 2.648935e-53 | -8.615850e-47 |
| Msa0046000 | Msa0712580 | 0.804234 | 2.382465e-49 | -8.615850e-47 |
| Msa0046000 | Msa0721650 | 0.814871 | 1.235323e-51 | -8.615850e-47 |
| Msa0046000 | Msa0733460 | 0.804320 | 2.285903e-49 | -8.615850e-47 |
| Msa0046000 | Msa0741710 | 0.802650 | 5.072709e-49 | -8.615850e-47 |
| Msa0046000 | Msa0761930 | 0.809142 | 2.190055e-50 | -8.615850e-47 |
| Msa0046000 | Msa0762390 | 0.805429 | 1.340840e-49 | -8.615850e-47 |
| Msa0046000 | Msa0762470 | 0.801790 | 7.624833e-49 | -8.615850e-47 |
| Msa0046000 | Msa0766540 | 0.808873 | 2.500589e-50 | -8.615850e-47 |
| Msa0046000 | Msa0779830 | 0.800705 | 1.271558e-48 | -8.615850e-47 |
| Msa0046000 | Msa0793160 | 0.971831 | 8.708479e-134 | -8.615850e-47 |
| Msa0046000 | Msa0807170 | 0.806924 | 6.494575e-50 | -8.615850e-47 |
| Msa0046000 | Msa0830830 | 0.806610 | 7.565011e-50 | -8.615850e-47 |
| Msa0046000 | Msa0842370 | 0.801282 | 9.692964e-49 | -8.615850e-47 |
| Msa0046000 | Msa0898090 | 0.802168 | 6.376775e-49 | -8.615850e-47 |
| Msa0046000 | Msa0929440 | 0.800005 | 1.765711e-48 | -8.615850e-47 |
| Msa0046000 | Msa0946570 | 0.808911 | 2.453668e-50 | -8.615850e-47 |
| Msa0046000 | Msa1015020 | 0.817049 | 4.034646e-52 | -8.615850e-47 |
| Msa0046000 | Msa1028960 | 0.800186 | 1.621982e-48 | -8.615850e-47 |
| Msa0046000 | Msa1031620 | 0.803352 | 3.631212e-49 | -8.615850e-47 |
| Msa0046000 | Msa1033460 | 0.818569 | 1.830650e-52 | -8.615850e-47 |
| Msa0046000 | Msa1040030 | 0.822705 | 2.053737e-53 | -8.615850e-47 |
| Msa0046000 | Msa1042420 | 0.802947 | 4.405685e-49 | -8.615850e-47 |
| Msa0046000 | Msa1078210 | 0.804447 | 2.151224e-49 | -8.615850e-47 |
| Msa0046000 | Msa1081650 | 0.818549 | 1.849455e-52 | -8.615850e-47 |
| Msa0046000 | Msa1113780 | 0.827075 | 1.910918e-54 | -8.615850e-47 |
| Msa0046000 | Msa1118870 | 0.810671 | 1.026351e-50 | -8.615850e-47 |
| Msa0046000 | Msa1118890 | 0.805180 | 1.512092e-49 | -8.615850e-47 |
| Msa0046000 | Msa1128230 | 0.800836 | 1.195646e-48 | -8.615850e-47 |
| Msa0046000 | Msa1151970 | 0.804311 | 2.295589e-49 | -8.615850e-47 |
| Msa0046000 | Msa1158540 | 0.803395 | 3.558276e-49 | -8.615850e-47 |
| Msa0046000 | Msa1160470 | 0.830030 | 3.694055e-55 | -8.615850e-47 |
| Msa0046000 | Msa1161550 | 0.804566 | 2.031124e-49 | -8.615850e-47 |
| Msa0046000 | Msa1165330 | 0.804687 | 1.916838e-49 | -8.615850e-47 |
| Msa0046000 | Msa1177300 | 0.829817 | 4.162728e-55 | -8.615850e-47 |
| Msa0046000 | Msa1182950 | 0.811254 | 7.676817e-51 | -8.615850e-47 |
| Msa0046000 | Msa1198280 | 0.809199 | 2.129660e-50 | -8.615850e-47 |
| Msa0046000 | Msa1223520 | 0.816995 | 4.148772e-52 | -8.615850e-47 |
| Msa0046000 | Msa1223600 | 0.814631 | 1.395987e-51 | -8.615850e-47 |
| Msa0046000 | Msa1227090 | 0.810395 | 1.177824e-50 | -8.615850e-47 |
| Msa0046000 | Msa1229880 | 0.831738 | 1.407850e-55 | -8.615850e-47 |
| Msa0046000 | Msa1235960 | 0.802305 | 5.975535e-49 | -8.615850e-47 |
| Msa0046000 | Msa1235990 | 0.805922 | 1.056342e-49 | -8.615850e-47 |
| Msa0046000 | Msa1251960 | 0.804758 | 1.852599e-49 | -8.615850e-47 |
| Msa0046000 | Msa1263460 | 0.802993 | 4.309055e-49 | -8.615850e-47 |
| Msa0046000 | Msa1263600 | 0.816600 | 5.085744e-52 | -8.615850e-47 |
| Msa0046000 | Msa1265990 | 0.803991 | 2.676688e-49 | -8.615850e-47 |
| Msa0046000 | Msa1267390 | 0.818053 | 2.396224e-52 | -8.615850e-47 |
| Msa0046000 | Msa1267800 | 0.803261 | 3.793872e-49 | -8.615850e-47 |
| Msa0046000 | Msa1269370 | 0.819277 | 1.263950e-52 | -8.615850e-47 |
| Msa0046000 | Msa1292610 | 0.804254 | 2.359560e-49 | -8.615850e-47 |
| Msa0046000 | Msa1310620 | 0.815350 | 9.672190e-52 | -8.615850e-47 |
| Msa0046000 | Msa1316090 | 0.810389 | 1.181146e-50 | -8.615850e-47 |
| Msa0046000 | Msa1317090 | 0.824769 | 6.744430e-54 | -8.615850e-47 |
| Msa0046000 | Msa1317340 | 0.812751 | 3.621525e-51 | -8.615850e-47 |
| Msa0046000 | Msa1342460 | 0.808758 | 2.646405e-50 | -8.615850e-47 |
| Msa0046000 | Msa1357090 | 0.801755 | 7.751605e-49 | -8.615850e-47 |
| Msa0046000 | Msa1357760 | 0.806037 | 9.989966e-50 | -8.615850e-47 |
| Msa0046000 | Msa1368800 | 0.814521 | 1.477174e-51 | -8.615850e-47 |
| Msa0046000 | Msa1369220 | 0.805003 | 1.646109e-49 | -8.615850e-47 |
| Msa0046000 | Msa1370830 | 0.813599 | 2.359045e-51 | -8.615850e-47 |
| Msa0046000 | Msa1371540 | 0.803778 | 2.963616e-49 | -8.615850e-47 |
| Msa0046000 | Msa1373310 | 0.816799 | 4.590114e-52 | -8.615850e-47 |
| Msa0046000 | Msa1374610 | 0.820011 | 8.592424e-53 | -8.615850e-47 |
| Msa0046000 | Msa1376390 | 0.811885 | 5.596851e-51 | -8.615850e-47 |
| Msa0046000 | Msa1379360 | 0.814729 | 1.328378e-51 | -8.615850e-47 |
| Msa0046000 | Msa1382100 | 0.801497 | 8.756797e-49 | -8.615850e-47 |
| Msa0046000 | Msa1387650 | 0.806685 | 7.296602e-50 | -8.615850e-47 |
| Msa0046000 | Msa1391600 | 0.802860 | 4.591172e-49 | -8.615850e-47 |
| Msa0046000 | Msa1398150 | 0.802862 | 4.586102e-49 | -8.615850e-47 |
| Msa0046000 | Msa1401640 | 0.803981 | 2.689629e-49 | -8.615850e-47 |
| Msa0046000 | Msa1405990 | 0.805421 | 1.346060e-49 | -8.615850e-47 |
| Msa0046000 | Msa1410360 | 0.809110 | 2.224336e-50 | -8.615850e-47 |
| Msa0046000 | Msa1416850 | 0.813066 | 3.089836e-51 | -8.615850e-47 |
| Msa0046000 | Msa1425600 | 0.811480 | 6.857036e-51 | -8.615850e-47 |
| Msa0046000 | Msa1426690 | 0.802113 | 6.544888e-49 | -8.615850e-47 |
| Msa0046000 | Msa1428050 | 0.813400 | 2.609114e-51 | -8.615850e-47 |
| Msa0046000 | Msa1449510 | 0.814825 | 1.264488e-51 | -8.615850e-47 |
| Msa0046000 | Msa1463890 | 0.812478 | 4.154630e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046000 | MtrunA17_Chr1g0213231 | 95.031 | 322 | 14 | 2 | 1 | 320 | 5 | 326 | 0.0 | 613 |
| Msa0046000 | MtrunA17_Chr3g0136101 | 33.213 | 277 | 168 | 7 | 42 | 310 | 75 | 342 | 1.12e-44 | 155 |
| Msa0046000 | MtrunA17_Chr2g0321561 | 26.962 | 293 | 185 | 12 | 42 | 316 | 8 | 289 | 5.03e-23 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046000 | AT4G08790.1 | 75.714 | 280 | 64 | 2 | 38 | 314 | 29 | 307 | 2.37e-160 | 450 |
| Msa0046000 | AT5G12040.1 | 31.734 | 271 | 174 | 5 | 45 | 310 | 90 | 354 | 3.46e-44 | 155 |
| Msa0046000 | AT5G12040.2 | 33.981 | 206 | 127 | 4 | 45 | 245 | 90 | 291 | 2.51e-34 | 127 |
| Msa0046000 | AT2G27450.1 | 26.280 | 293 | 187 | 11 | 42 | 316 | 9 | 290 | 1.05e-22 | 96.3 |
| Msa0046000 | AT2G27450.3 | 26.027 | 219 | 137 | 9 | 112 | 316 | 4 | 211 | 2.18e-14 | 71.6 |
| Msa0046000 | AT5G22300.1 | 24.342 | 304 | 171 | 13 | 29 | 293 | 25 | 308 | 1.17e-12 | 68.2 |
| Msa0046000 | AT5G64370.1 | 23.684 | 304 | 200 | 6 | 25 | 302 | 72 | 369 | 2.68e-11 | 64.3 |
Find 88 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGGATGGACCTATTA+TGG | 0.195841 | 1_1:-78010829 | Msa0046000:CDS |
| ACGAGAGCAGGTGGAGAAAT+TGG | 0.233932 | 1_1:+78011043 | None:intergenic |
| GCTTCTCTATAGTACTTAAT+TGG | 0.237876 | 1_1:-78007278 | Msa0046000:exon |
| ATCCTCAGGATAATCAAATA+AGG | 0.266788 | 1_1:+78007178 | None:intergenic |
| CTTGGAGGCTTTCAAGAAAA+AGG | 0.272049 | 1_1:-78010262 | Msa0046000:CDS |
| TGGATTCTTAAAAGTATATA+TGG | 0.290031 | 1_1:-78011268 | Msa0046000:five_prime_UTR |
| ATGTGCCTGCTCCATGTTAA+AGG | 0.308191 | 1_1:-78007059 | Msa0046000:three_prime_UTR |
| GACAGTCCTATTGGGCGTTT+GGG | 0.332728 | 1_1:-78008756 | Msa0046000:CDS |
| AGACAGTCCTATTGGGCGTT+TGG | 0.340805 | 1_1:-78008757 | Msa0046000:CDS |
| CACATTGATTATCGATCCTT+GGG | 0.353661 | 1_1:-78008052 | Msa0046000:CDS |
| AGGTTTGATGTGGATGTTCC+TGG | 0.357362 | 1_1:-78009209 | Msa0046000:CDS |
| TATTAGTATTGCTCAACCTT+TGG | 0.361087 | 1_1:-78010844 | Msa0046000:CDS |
| CAAATGATTACCTTAGCAAT+AGG | 0.366454 | 1_1:+78007491 | None:intergenic |
| ACCCCTTTGTGACTATTGAA+TGG | 0.378528 | 1_1:+78007253 | None:intergenic |
| GTTGCAGTAGACAGTCCTAT+TGG | 0.386112 | 1_1:-78008765 | Msa0046000:CDS |
| AAAGGAAGCCATTTGACTTC+TGG | 0.391324 | 1_1:-78007307 | Msa0046000:CDS |
| GAGCAGTATTGGTCCATAAT+AGG | 0.397134 | 1_1:+78010816 | None:intergenic |
| CTAAGGCCCAAACGCCCAAT+AGG | 0.406011 | 1_1:+78008750 | None:intergenic |
| GATGCAGAGAGTCAAGTATT+TGG | 0.408938 | 1_1:-78010291 | Msa0046000:intron |
| CCCACAAAAGAGAATGCTTC+AGG | 0.418744 | 1_1:+78010885 | None:intergenic |
| GTTTCAGATCGTTTGTCTAC+GGG | 0.424933 | 1_1:-78007569 | Msa0046000:intron |
| CCCCTTTGTGACTATTGAAT+GGG | 0.425634 | 1_1:+78007254 | None:intergenic |
| TTGCAGTAGACAGTCCTATT+GGG | 0.433163 | 1_1:-78008764 | Msa0046000:CDS |
| ACACATTGATTATCGATCCT+TGG | 0.433778 | 1_1:-78008053 | Msa0046000:CDS |
| TCAAAGGAAGCTGCATCAGC+TGG | 0.441637 | 1_1:-78010927 | Msa0046000:intron |
| AGTGACTGGTGAAGCACATT+GGG | 0.449806 | 1_1:-78008498 | Msa0046000:CDS |
| TGTTTCAGATCGTTTGTCTA+CGG | 0.457934 | 1_1:-78007570 | Msa0046000:intron |
| ACCAATACTGCTCTTTAGCC+AGG | 0.458330 | 1_1:-78010806 | Msa0046000:intron |
| TACTTTGACAAGACGAGAGC+AGG | 0.460604 | 1_1:+78011031 | None:intergenic |
| TCCTCAGGATAATCAAATAA+GGG | 0.460892 | 1_1:+78007179 | None:intergenic |
| TTATTTGATTATCCTGAGGA+TGG | 0.465319 | 1_1:-78007176 | Msa0046000:three_prime_UTR |
| AGTATTTGGTTGTCACTTGG+AGG | 0.473114 | 1_1:-78010277 | Msa0046000:CDS |
| ACTGTTGTTGGTCGCTTACC+AGG | 0.475755 | 1_1:-78008027 | Msa0046000:intron |
| GGCAACTCGGACTGAATTAG+TGG | 0.475966 | 1_1:+78011100 | None:intergenic |
| GCAGCTTTCCAGAAGTCAAA+TGG | 0.488007 | 1_1:+78007299 | None:intergenic |
| ATGTGGATGTTCCTGGTGGA+AGG | 0.489621 | 1_1:-78009202 | Msa0046000:CDS |
| GTGCATTGTCCAGATACTAT+TGG | 0.490967 | 1_1:-78008540 | Msa0046000:intron |
| TCAAGTATTTGGTTGTCACT+TGG | 0.491926 | 1_1:-78010280 | Msa0046000:CDS |
| CGGAGAGAGAGGCTTGTAAT+CGG | 0.494702 | 1_1:+78011147 | None:intergenic |
| GCCTCTCTCTCCGTCGTCGC+CGG | 0.500716 | 1_1:-78011137 | Msa0046000:CDS |
| ACCCATTCAATAGTCACAAA+GGG | 0.504051 | 1_1:-78007255 | Msa0046000:three_prime_UTR |
| ACCTGGCTAAAGAGCAGTAT+TGG | 0.506049 | 1_1:+78010805 | None:intergenic |
| AGGCTTGTAATCGGCGGCGA+CGG | 0.508563 | 1_1:+78011156 | None:intergenic |
| GTCATAGCTGCTGCACAAGC+TGG | 0.511906 | 1_1:-78008108 | Msa0046000:CDS |
| CGTCGCCGGCGAGTCAATCA+TGG | 0.512033 | 1_1:-78011123 | Msa0046000:CDS |
| AGTATTGCTCAACCTTTGGA+TGG | 0.516840 | 1_1:-78010840 | Msa0046000:CDS |
| ATTGGAAGCGAGGTCGGTGA+TGG | 0.517816 | 1_1:+78011061 | None:intergenic |
| CAGTTGTTGCGTTTCCAACA+TGG | 0.520574 | 1_1:-78008693 | Msa0046000:CDS |
| ATTTGTAACACCCTTTAACA+TGG | 0.527677 | 1_1:+78007048 | None:intergenic |
| CGCAACAACTGATAAAGCTC+AGG | 0.529790 | 1_1:+78008705 | None:intergenic |
| CTAATACCTGTGCTCCATGT+TGG | 0.546597 | 1_1:+78008679 | None:intergenic |
| TCATTTGAGCTGCGGCAACT+CGG | 0.547963 | 1_1:+78011087 | None:intergenic |
| AACACCCTTTAACATGGAGC+AGG | 0.548062 | 1_1:+78007054 | None:intergenic |
| GATTGACTCGCCGGCGACGA+CGG | 0.552241 | 1_1:+78011127 | None:intergenic |
| TATGATGCGATTGTCGTGTT+GGG | 0.553855 | 1_1:-78011216 | Msa0046000:CDS |
| TCGTTTGTCTACGGGAATTG+TGG | 0.555672 | 1_1:-78007561 | Msa0046000:CDS |
| TGTGCCTGCTCCATGTTAAA+GGG | 0.557169 | 1_1:-78007058 | Msa0046000:three_prime_UTR |
| TCAAATCATAGCAAACACTA+AGG | 0.560660 | 1_1:+78008733 | None:intergenic |
| AGAGAAGATGCCTATTGCTA+AGG | 0.563526 | 1_1:-78007501 | Msa0046000:intron |
| AATGACAAAAGAGAAAGTTA+TGG | 0.563585 | 1_1:-78008078 | Msa0046000:CDS |
| GCGTTTCCAACATGGAGCAC+AGG | 0.566309 | 1_1:-78008685 | Msa0046000:intron |
| TCCCTTATTTGATTATCCTG+AGG | 0.567134 | 1_1:-78007180 | Msa0046000:three_prime_UTR |
| GGAGAAATTGGAAGCGAGGT+CGG | 0.567271 | 1_1:+78011055 | None:intergenic |
| AGTGGCCATGATTGACTCGC+CGG | 0.569921 | 1_1:+78011118 | None:intergenic |
| ATATGATGCGATTGTCGTGT+TGG | 0.570150 | 1_1:-78011217 | Msa0046000:CDS |
| GCAGCATTCACTAAAGTGAC+TGG | 0.570698 | 1_1:-78008512 | Msa0046000:CDS |
| ACATTGTATACACCATCCTC+AGG | 0.580937 | 1_1:+78007164 | None:intergenic |
| GTCACTTTAGTGAATGCTGC+GGG | 0.582925 | 1_1:+78008515 | None:intergenic |
| AAGTGACTGGTGAAGCACAT+TGG | 0.586083 | 1_1:-78008499 | Msa0046000:CDS |
| GACCCATTCAATAGTCACAA+AGG | 0.598689 | 1_1:-78007256 | Msa0046000:three_prime_UTR |
| GCCGGCGACGACGGAGAGAG+AGG | 0.603051 | 1_1:+78011136 | None:intergenic |
| TGTGGATGTTCCTGGTGGAA+GGG | 0.603877 | 1_1:-78009201 | Msa0046000:CDS |
| CATGTTGTTGTAGATGACAC+TGG | 0.606125 | 1_1:-78010211 | Msa0046000:CDS |
| GAGGATGGTGTATACAATGT+TGG | 0.606536 | 1_1:-78007161 | Msa0046000:three_prime_UTR |
| TTTGACAAGACGAGAGCAGG+TGG | 0.616133 | 1_1:+78011034 | None:intergenic |
| GTAGTCTATTTCAATATGAG+AGG | 0.617071 | 1_1:-78007232 | Msa0046000:three_prime_UTR |
| TCTTTATATACCCTTCCACC+AGG | 0.630907 | 1_1:+78009191 | None:intergenic |
| AGGTGGAGAAATTGGAAGCG+AGG | 0.646802 | 1_1:+78011051 | None:intergenic |
| TCCATAATAGGTCCATCCAA+AGG | 0.658806 | 1_1:+78010828 | None:intergenic |
| AGTCACTTTAGTGAATGCTG+CGG | 0.666530 | 1_1:+78008514 | None:intergenic |
| TGTGTATTAAACAAATGTTG+AGG | 0.680661 | 1_1:+78010232 | None:intergenic |
| ACATTGATTATCGATCCTTG+GGG | 0.682126 | 1_1:-78008051 | Msa0046000:CDS |
| AGAGAGAGGCTTGTAATCGG+CGG | 0.684472 | 1_1:+78011150 | None:intergenic |
| GATGGATGTCATTTGAGCTG+CGG | 0.692126 | 1_1:+78011079 | None:intergenic |
| CATTGATTATCGATCCTTGG+GGG | 0.696086 | 1_1:-78008050 | Msa0046000:CDS |
| CCCATTCAATAGTCACAAAG+GGG | 0.702665 | 1_1:-78007254 | Msa0046000:three_prime_UTR |
| TTTGATGTGGATGTTCCTGG+TGG | 0.706744 | 1_1:-78009206 | Msa0046000:CDS |
| ATGTTGTTGTAGATGACACT+GGG | 0.710242 | 1_1:-78010210 | Msa0046000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATTAATA+AGG | + | chr1_1:78007658-78007677 | None:intergenic | 0.0% |
| !!! | AATTATTTATTTGTTTTCAA+AGG | - | chr1_1:78007370-78007389 | Msa0046000:intron | 10.0% |
| !!! | TTTCAATTAATTTTATTTGA+AGG | - | chr1_1:78009084-78009103 | Msa0046000:intron | 10.0% |
| !!! | ATATATCAACATATATTTTG+AGG | - | chr1_1:78007900-78007919 | Msa0046000:intron | 15.0% |
| !! | TAATTGAAAAACAATTAACT+GGG | + | chr1_1:78008865-78008884 | None:intergenic | 15.0% |
| !! | AAAATTTGAATAGTAAATGT+TGG | + | chr1_1:78010152-78010171 | None:intergenic | 15.0% |
| !! | ATGTACCAAAATAAAAAATA+TGG | - | chr1_1:78011107-78011126 | Msa0046000:CDS | 15.0% |
| !! | TGTACCAAAATAAAAAATAT+GGG | - | chr1_1:78011108-78011127 | Msa0046000:CDS | 15.0% |
| !!! | TGGATTCTTAAAAGTATATA+TGG | - | chr1_1:78007045-78007064 | Msa0046000:three_prime_UTR | 20.0% |
| !!! | TTTTCGGAAGAAAAAAAAAA+GGG | + | chr1_1:78008752-78008771 | None:intergenic | 20.0% |
| !! | AATTGAAAAACAATTAACTG+GGG | + | chr1_1:78008864-78008883 | None:intergenic | 20.0% |
| !! | CTAATTGAAAAACAATTAAC+TGG | + | chr1_1:78008866-78008885 | None:intergenic | 20.0% |
| !!! | TTTTTTGGGATAAAGAATTA+GGG | + | chr1_1:78008892-78008911 | None:intergenic | 20.0% |
| !!! | AAAAATGAGAAGTTTTGATT+AGG | + | chr1_1:78009230-78009249 | None:intergenic | 20.0% |
| !! | TAAAGAAGAGTAAAAAAAGA+CGG | + | chr1_1:78010706-78010725 | None:intergenic | 20.0% |
| ! | TCATAATAAGTCAATCCAAA+CGG | - | chr1_1:78007828-78007847 | Msa0046000:intron | 25.0% |
| ! | TTATAGTATTAAGATCCGTT+TGG | + | chr1_1:78007846-78007865 | None:intergenic | 25.0% |
| ! | TGTGTATTAAACAAATGTTG+AGG | + | chr1_1:78008084-78008103 | None:intergenic | 25.0% |
| !! | GATAAAGTTAATAGTCTTAC+AGG | + | chr1_1:78008158-78008177 | None:intergenic | 25.0% |
| ! | TTCTTAATCTAATGTGTGTT+TGG | - | chr1_1:78008685-78008704 | Msa0046000:intron | 25.0% |
| !! | GTTTTCGGAAGAAAAAAAAA+AGG | + | chr1_1:78008753-78008772 | None:intergenic | 25.0% |
| ! | ATTGAAAAACAATTAACTGG+GGG | + | chr1_1:78008863-78008882 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGATAAAGAATT+AGG | + | chr1_1:78008893-78008912 | None:intergenic | 25.0% |
| ! | ACATATAGCATAAGTTACTT+GGG | + | chr1_1:78009004-78009023 | None:intergenic | 25.0% |
| ! | AACATATAGCATAAGTTACT+TGG | + | chr1_1:78009005-78009024 | None:intergenic | 25.0% |
| !! | TCTTTCTGTTTGTCTTATTA+TGG | - | chr1_1:78009048-78009067 | Msa0046000:intron | 25.0% |
| !!! | TTTTATTTGAAGGTTTGATG+TGG | - | chr1_1:78009094-78009113 | Msa0046000:intron | 25.0% |
| !! | GAAAGTAATTTTACAGAATC+AGG | - | chr1_1:78009143-78009162 | Msa0046000:intron | 25.0% |
| !!! | AGAAGTTTTGATTAGGATTA+AGG | + | chr1_1:78009223-78009242 | None:intergenic | 25.0% |
| !! | CAGTTAAAGTTTTCAAATGT+CGG | - | chr1_1:78009338-78009357 | Msa0046000:intron | 25.0% |
| ! | TTCATATCGCATATAATTGA+AGG | + | chr1_1:78009459-78009478 | None:intergenic | 25.0% |
| ! | AACACTTATCTATGATATGA+AGG | - | chr1_1:78009482-78009501 | Msa0046000:intron | 25.0% |
| !! | AGGATATTGTTTTCATATCT+TGG | - | chr1_1:78009502-78009521 | Msa0046000:intron | 25.0% |
| !!! | TTGCTTTTCTGCTTAAAATA+TGG | - | chr1_1:78009666-78009685 | Msa0046000:intron | 25.0% |
| !! | TGCTTTTCTGCTTAAAATAT+GGG | - | chr1_1:78009667-78009686 | Msa0046000:intron | 25.0% |
| !!! | TCCTAAACAGCATATTTTAA+GGG | + | chr1_1:78009734-78009753 | None:intergenic | 25.0% |
| !! | ATCCTAAACAGCATATTTTA+AGG | + | chr1_1:78009735-78009754 | None:intergenic | 25.0% |
| ! | GTAAGAATATACATGAAGAT+GGG | + | chr1_1:78009955-78009974 | None:intergenic | 25.0% |
| ! | AGTAAGAATATACATGAAGA+TGG | + | chr1_1:78009956-78009975 | None:intergenic | 25.0% |
| ! | AATGACAAAAGAGAAAGTTA+TGG | - | chr1_1:78010235-78010254 | Msa0046000:CDS | 25.0% |
| ! | GATCTTATATGATATTTCTC+AGG | + | chr1_1:78010445-78010464 | None:intergenic | 25.0% |
| !!! | TCCAATGAAGTTTTTTTTAG+TGG | - | chr1_1:78010608-78010627 | Msa0046000:intron | 25.0% |
| ! | ACCACTAAAAAAAACTTCAT+TGG | + | chr1_1:78010612-78010631 | None:intergenic | 25.0% |
| ! | GATGTATGCATCAATAATAA+AGG | + | chr1_1:78010967-78010986 | None:intergenic | 25.0% |
| !!! | GAGTCCCATATTTTTTATTT+TGG | + | chr1_1:78011115-78011134 | None:intergenic | 25.0% |
| TATTAGTATTGCTCAACCTT+TGG | - | chr1_1:78007469-78007488 | Msa0046000:intron | 30.0% | |
| TATGAGTCTGTTTGGATAAA+TGG | - | chr1_1:78007564-78007583 | Msa0046000:CDS | 30.0% | |
| GTTGATATATAGACACTGTT+TGG | + | chr1_1:78007890-78007909 | None:intergenic | 30.0% | |
| !! | TATATTTTGAGGACCTTACT+CGG | - | chr1_1:78007911-78007930 | Msa0046000:intron | 30.0% |
| AACTCAATATTAACCGAGTA+AGG | + | chr1_1:78007927-78007946 | None:intergenic | 30.0% | |
| !! | TTTCCATCTGAGTATTGATT+TGG | - | chr1_1:78008193-78008212 | Msa0046000:intron | 30.0% |
| ! | TAGTTGGATTTACTGTTTTG+AGG | + | chr1_1:78008470-78008489 | None:intergenic | 30.0% |
| AATTTATCCTCAAAGCAGAA+AGG | - | chr1_1:78008517-78008536 | Msa0046000:CDS | 30.0% | |
| CAAATGACAATGAATGTGTT+TGG | + | chr1_1:78008822-78008841 | None:intergenic | 30.0% | |
| ATTTGATAAAAGCCGTAACA+TGG | - | chr1_1:78008837-78008856 | Msa0046000:intron | 30.0% | |
| !!! | TGGGTTTTGAGTTGTTTTTT+GGG | + | chr1_1:78008906-78008925 | None:intergenic | 30.0% |
| !!! | TTGGGTTTTGAGTTGTTTTT+TGG | + | chr1_1:78008907-78008926 | None:intergenic | 30.0% |
| CACTCTAGCTGATTAAATTT+GGG | + | chr1_1:78008925-78008944 | None:intergenic | 30.0% | |
| TCACTCTAGCTGATTAAATT+TGG | + | chr1_1:78008926-78008945 | None:intergenic | 30.0% | |
| !! | GAGTTGATAAACAAGTCAAT+AGG | + | chr1_1:78008982-78009001 | None:intergenic | 30.0% |
| TAAGACAAACAGAAAGAAGT+TGG | + | chr1_1:78009045-78009064 | None:intergenic | 30.0% | |
| ! | GTAATTTTACAGAATCAGGT+AGG | - | chr1_1:78009147-78009166 | Msa0046000:intron | 30.0% |
| TAGGATATTTACTCTTGACA+TGG | - | chr1_1:78009166-78009185 | Msa0046000:intron | 30.0% | |
| ATTTCACCCAAGAAAAATAG+AGG | - | chr1_1:78009274-78009293 | Msa0046000:intron | 30.0% | |
| TTTCACCCAAGAAAAATAGA+GGG | - | chr1_1:78009275-78009294 | Msa0046000:intron | 30.0% | |
| TCAAATCATAGCAAACACTA+AGG | + | chr1_1:78009583-78009602 | None:intergenic | 30.0% | |
| !! | CCTAAACAGCATATTTTAAG+GGG | + | chr1_1:78009733-78009752 | None:intergenic | 30.0% |
| GATTTAATGAATGCCTTATC+AGG | - | chr1_1:78010183-78010202 | Msa0046000:CDS | 30.0% | |
| !!! | CTATTTTGACTATCATTACG+AGG | + | chr1_1:78010410-78010429 | None:intergenic | 30.0% |
| AAAAAAAGACGGTATCATTG+TGG | + | chr1_1:78010695-78010714 | None:intergenic | 30.0% | |
| CAAATGATTACCTTAGCAAT+AGG | + | chr1_1:78010825-78010844 | None:intergenic | 30.0% | |
| GCTTCTCTATAGTACTTAAT+TGG | - | chr1_1:78011035-78011054 | Msa0046000:CDS | 30.0% | |
| GTAGTCTATTTCAATATGAG+AGG | - | chr1_1:78011081-78011100 | Msa0046000:CDS | 30.0% | |
| TCCTCAGGATAATCAAATAA+GGG | + | chr1_1:78011137-78011156 | None:intergenic | 30.0% | |
| ATCCTCAGGATAATCAAATA+AGG | + | chr1_1:78011138-78011157 | None:intergenic | 30.0% | |
| TTATTTGATTATCCTGAGGA+TGG | - | chr1_1:78011137-78011156 | Msa0046000:CDS | 30.0% | |
| ATTTGTAACACCCTTTAACA+TGG | + | chr1_1:78011268-78011287 | None:intergenic | 30.0% | |
| AGAATAAAAGCAAGCAAACC+TGG | + | chr1_1:78007528-78007547 | None:intergenic | 35.0% | |
| GTTCATGATATGAGTCTGTT+TGG | - | chr1_1:78007556-78007575 | Msa0046000:CDS | 35.0% | |
| ACTATGAGCTTATTGACGTA+AGG | + | chr1_1:78007631-78007650 | None:intergenic | 35.0% | |
| TTAACCAACCACCTTTACAA+AGG | - | chr1_1:78007784-78007803 | Msa0046000:intron | 35.0% | |
| AACATAAGCCTTTGTAAAGG+TGG | + | chr1_1:78007795-78007814 | None:intergenic | 35.0% | |
| GCTAACATAAGCCTTTGTAA+AGG | + | chr1_1:78007798-78007817 | None:intergenic | 35.0% | |
| TCAAGTATTTGGTTGTCACT+TGG | - | chr1_1:78008033-78008052 | Msa0046000:CDS | 35.0% | |
| ATGTTGTTGTAGATGACACT+GGG | - | chr1_1:78008103-78008122 | Msa0046000:CDS | 35.0% | |
| ! | CAGGTGTATTTTTCTGTAAG+TGG | + | chr1_1:78008139-78008158 | None:intergenic | 35.0% |
| ACACCAAATCAATACTCAGA+TGG | + | chr1_1:78008199-78008218 | None:intergenic | 35.0% | |
| TGCATGAGAAGAATGAGAAA+TGG | - | chr1_1:78008369-78008388 | Msa0046000:intron | 35.0% | |
| AAATGATCCTTTCTGCTTTG+AGG | + | chr1_1:78008527-78008546 | None:intergenic | 35.0% | |
| ! | AAAATGTTGCTTCTGTGTCA+TGG | + | chr1_1:78008660-78008679 | None:intergenic | 35.0% |
| AACAAGTATTACCGCTATAG+CGG | - | chr1_1:78008954-78008973 | Msa0046000:intron | 35.0% | |
| ! | AGTTGGTTTCTGATTTCAAG+AGG | + | chr1_1:78009028-78009047 | None:intergenic | 35.0% |
| TTACTCTTGACATGGTATCA+AGG | - | chr1_1:78009174-78009193 | Msa0046000:CDS | 35.0% | |
| ACATGGTATCAAGGCTAAAT+GGG | - | chr1_1:78009183-78009202 | Msa0046000:CDS | 35.0% | |
| !! | AGGTTCCCTCTATTTTTCTT+GGG | + | chr1_1:78009283-78009302 | None:intergenic | 35.0% |
| !! | AAGGTTCCCTCTATTTTTCT+TGG | + | chr1_1:78009284-78009303 | None:intergenic | 35.0% |
| ! | AGTAAGGTTCTTTCTAGGAA+AGG | + | chr1_1:78009303-78009322 | None:intergenic | 35.0% |
| TTTCCTAGAAAGAACCTTAC+TGG | - | chr1_1:78009302-78009321 | Msa0046000:intron | 35.0% | |
| TTTCCAGTAAGGTTCTTTCT+AGG | + | chr1_1:78009308-78009327 | None:intergenic | 35.0% | |
| !! | CTGACTATGTTGTTTCTAAG+AGG | + | chr1_1:78009367-78009386 | None:intergenic | 35.0% |
| TTGAAGGAAACGTATATCGT+TGG | + | chr1_1:78009443-78009462 | None:intergenic | 35.0% | |
| !!! | CATATCTTGGTGATGTTTTC+AGG | - | chr1_1:78009515-78009534 | Msa0046000:intron | 35.0% |
| TTCTGCTTAAAATATGGGAG+TGG | - | chr1_1:78009672-78009691 | Msa0046000:intron | 35.0% | |
| ATCATCTCCAGTGAAAAAAC+TGG | - | chr1_1:78009695-78009714 | Msa0046000:intron | 35.0% | |
| !!! | ATTGTCTCCAGTTTTTTCAC+TGG | + | chr1_1:78009705-78009724 | None:intergenic | 35.0% |
| !! | AAACAGCATATTTTAAGGGG+AGG | + | chr1_1:78009730-78009749 | None:intergenic | 35.0% |
| ! | CCCCTTAAAATATGCTGTTT+AGG | - | chr1_1:78009730-78009749 | Msa0046000:intron | 35.0% |
| GGAGAGTTGAAGAAAGTAAT+TGG | + | chr1_1:78010103-78010122 | None:intergenic | 35.0% | |
| AGTTGTTAGAAACGTTAGTG+TGG | + | chr1_1:78010124-78010143 | None:intergenic | 35.0% | |
| ! | ACACATTGATTATCGATCCT+TGG | - | chr1_1:78010260-78010279 | Msa0046000:CDS | 35.0% |
| ! | CACATTGATTATCGATCCTT+GGG | - | chr1_1:78010261-78010280 | Msa0046000:CDS | 35.0% |
| ! | ACATTGATTATCGATCCTTG+GGG | - | chr1_1:78010262-78010281 | Msa0046000:CDS | 35.0% |
| ! | GAAGTATCAAGTTTCTTACC+TGG | + | chr1_1:78010307-78010326 | None:intergenic | 35.0% |
| TTACGAGGAAGAAAGAAACA+AGG | + | chr1_1:78010395-78010414 | None:intergenic | 35.0% | |
| AAGATCATATGTATGAGCTG+AGG | - | chr1_1:78010459-78010478 | Msa0046000:intron | 35.0% | |
| TGTTTCAGATCGTTTGTCTA+CGG | - | chr1_1:78010743-78010762 | Msa0046000:intron | 35.0% | |
| !! | TTCCATTCTCTAGTATTGGT+CGG | + | chr1_1:78010864-78010883 | None:intergenic | 35.0% |
| ACCAATACTAGAGAATGGAA+TGG | - | chr1_1:78010864-78010883 | Msa0046000:CDS | 35.0% | |
| TCCATTCCATTCTCTAGTAT+TGG | + | chr1_1:78010868-78010887 | None:intergenic | 35.0% | |
| ACCCATTCAATAGTCACAAA+GGG | - | chr1_1:78011058-78011077 | Msa0046000:CDS | 35.0% | |
| ! | TCCCTTATTTGATTATCCTG+AGG | - | chr1_1:78011133-78011152 | Msa0046000:CDS | 35.0% |
| ATATGATGCGATTGTCGTGT+TGG | - | chr1_1:78007096-78007115 | Msa0046000:three_prime_UTR | 40.0% | |
| TATGATGCGATTGTCGTGTT+GGG | - | chr1_1:78007097-78007116 | Msa0046000:three_prime_UTR | 40.0% | |
| !! | TCCTGAAGCATTCTCTTTTG+TGG | - | chr1_1:78007427-78007446 | Msa0046000:intron | 40.0% |
| !! | CCTGAAGCATTCTCTTTTGT+GGG | - | chr1_1:78007428-78007447 | Msa0046000:intron | 40.0% |
| ! | TCTTTTGTGGGTGCTAAAGA+TGG | - | chr1_1:78007440-78007459 | Msa0046000:intron | 40.0% |
| AGTATTGCTCAACCTTTGGA+TGG | - | chr1_1:78007473-78007492 | Msa0046000:intron | 40.0% | |
| ACCTTTGGATGGACCTATTA+TGG | - | chr1_1:78007484-78007503 | Msa0046000:intron | 40.0% | |
| TCCATAATAGGTCCATCCAA+AGG | + | chr1_1:78007488-78007507 | None:intergenic | 40.0% | |
| !! | GAGCAGTATTGGTCCATAAT+AGG | + | chr1_1:78007500-78007519 | None:intergenic | 40.0% |
| ACATAAGAGCTTATAGCACG+AGG | - | chr1_1:78007605-78007624 | Msa0046000:intron | 40.0% | |
| TAAGCCTTTGTAAAGGTGGT+TGG | + | chr1_1:78007791-78007810 | None:intergenic | 40.0% | |
| GATGCAGAGAGTCAAGTATT+TGG | - | chr1_1:78008022-78008041 | Msa0046000:intron | 40.0% | |
| ! | AGTATTTGGTTGTCACTTGG+AGG | - | chr1_1:78008036-78008055 | Msa0046000:CDS | 40.0% |
| CTTGGAGGCTTTCAAGAAAA+AGG | - | chr1_1:78008051-78008070 | Msa0046000:CDS | 40.0% | |
| CATGTTGTTGTAGATGACAC+TGG | - | chr1_1:78008102-78008121 | Msa0046000:CDS | 40.0% | |
| GCAACACAAACGCAAGTAAA+CGG | - | chr1_1:78008297-78008316 | Msa0046000:intron | 40.0% | |
| ACGGTTGGAACAAGAGATTA+TGG | - | chr1_1:78008316-78008335 | Msa0046000:intron | 40.0% | |
| ACGAAGAAGTAGAGTAAGAG+AGG | - | chr1_1:78008341-78008360 | Msa0046000:intron | 40.0% | |
| CGAAGAAGTAGAGTAAGAGA+GGG | - | chr1_1:78008342-78008361 | Msa0046000:intron | 40.0% | |
| GAGAAGAATGAGAAATGGAG+CGG | - | chr1_1:78008374-78008393 | Msa0046000:intron | 40.0% | |
| AGAAGAATGAGAAATGGAGC+GGG | - | chr1_1:78008375-78008394 | Msa0046000:intron | 40.0% | |
| ATCCAACTACTCTGTGTGTT+TGG | - | chr1_1:78008481-78008500 | Msa0046000:CDS | 40.0% | |
| TCCAACTACTCTGTGTGTTT+GGG | - | chr1_1:78008482-78008501 | Msa0046000:CDS | 40.0% | |
| ! | GGAGCTCTCAATTGTGTTTT+CGG | + | chr1_1:78008768-78008787 | None:intergenic | 40.0% |
| TCTTTATATACCCTTCCACC+AGG | + | chr1_1:78009125-78009144 | None:intergenic | 40.0% | |
| GACATGGTATCAAGGCTAAA+TGG | - | chr1_1:78009182-78009201 | Msa0046000:CDS | 40.0% | |
| GAACCTTACTGGAAAATCAG+AGG | - | chr1_1:78009313-78009332 | Msa0046000:intron | 40.0% | |
| ! | GAACCTCTGATTTTCCAGTA+AGG | + | chr1_1:78009319-78009338 | None:intergenic | 40.0% |
| TTGCAGTAGACAGTCCTATT+GGG | - | chr1_1:78009549-78009568 | Msa0046000:intron | 40.0% | |
| GTGCATTGTCCAGATACTAT+TGG | - | chr1_1:78009773-78009792 | Msa0046000:intron | 40.0% | |
| ! | AGTCACTTTAGTGAATGCTG+CGG | + | chr1_1:78009802-78009821 | None:intergenic | 40.0% |
| AAGATGGGAATGATGAAAGC+AGG | + | chr1_1:78009940-78009959 | None:intergenic | 40.0% | |
| ! | CATTGATTATCGATCCTTGG+GGG | - | chr1_1:78010263-78010282 | Msa0046000:CDS | 40.0% |
| GAGGAAGAAAGAAACAAGGA+AGG | + | chr1_1:78010391-78010410 | None:intergenic | 40.0% | |
| TGTAATACACCCCACTTAGT+GGG | + | chr1_1:78010558-78010577 | None:intergenic | 40.0% | |
| GTTTCAGATCGTTTGTCTAC+GGG | - | chr1_1:78010744-78010763 | Msa0046000:intron | 40.0% | |
| AGAGAAGATGCCTATTGCTA+AGG | - | chr1_1:78010812-78010831 | Msa0046000:CDS | 40.0% | |
| !! | TCCATTCTCTAGTATTGGTC+GGG | + | chr1_1:78010863-78010882 | None:intergenic | 40.0% |
| ! | GTACCTTTTCGTTTCAGCAA+AGG | - | chr1_1:78010988-78011007 | Msa0046000:intron | 40.0% |
| CTTCCTTTGCTGAAACGAAA+AGG | + | chr1_1:78010994-78011013 | None:intergenic | 40.0% | |
| ! | AAAGGAAGCCATTTGACTTC+TGG | - | chr1_1:78011006-78011025 | Msa0046000:intron | 40.0% |
| GACCCATTCAATAGTCACAA+AGG | - | chr1_1:78011057-78011076 | Msa0046000:CDS | 40.0% | |
| CCCCTTTGTGACTATTGAAT+GGG | + | chr1_1:78011062-78011081 | None:intergenic | 40.0% | |
| CCCATTCAATAGTCACAAAG+GGG | - | chr1_1:78011059-78011078 | Msa0046000:CDS | 40.0% | |
| ACCCCTTTGTGACTATTGAA+TGG | + | chr1_1:78011063-78011082 | None:intergenic | 40.0% | |
| ACATTGTATACACCATCCTC+AGG | + | chr1_1:78011152-78011171 | None:intergenic | 40.0% | |
| GAGGATGGTGTATACAATGT+TGG | - | chr1_1:78011152-78011171 | Msa0046000:CDS | 40.0% | |
| ! | GATGGATGTCATTTGAGCTG+CGG | + | chr1_1:78007237-78007256 | None:intergenic | 45.0% |
| TACTTTGACAAGACGAGAGC+AGG | + | chr1_1:78007285-78007304 | None:intergenic | 45.0% | |
| CCCACAAAAGAGAATGCTTC+AGG | + | chr1_1:78007431-78007450 | None:intergenic | 45.0% | |
| ACCAATACTGCTCTTTAGCC+AGG | - | chr1_1:78007507-78007526 | Msa0046000:CDS | 45.0% | |
| ACCTGGCTAAAGAGCAGTAT+TGG | + | chr1_1:78007511-78007530 | None:intergenic | 45.0% | |
| CACAAACGCAAGTAAACGGT+TGG | - | chr1_1:78008301-78008320 | Msa0046000:intron | 45.0% | |
| GAAGAATGAGAAATGGAGCG+GGG | - | chr1_1:78008376-78008395 | Msa0046000:intron | 45.0% | |
| AAGAATGAGAAATGGAGCGG+GGG | - | chr1_1:78008377-78008396 | Msa0046000:intron | 45.0% | |
| ACCCAAACACACAGAGTAGT+TGG | + | chr1_1:78008486-78008505 | None:intergenic | 45.0% | |
| CAATTGAGAGCTCCATACAG+AGG | - | chr1_1:78008774-78008793 | Msa0046000:CDS | 45.0% | |
| AAGAGCTCCTAACCTCTGTA+TGG | + | chr1_1:78008789-78008808 | None:intergenic | 45.0% | |
| ATTAACTGGGGGCCATGTTA+CGG | + | chr1_1:78008852-78008871 | None:intergenic | 45.0% | |
| AGGTTTGATGTGGATGTTCC+TGG | - | chr1_1:78009104-78009123 | Msa0046000:intron | 45.0% | |
| TTTGATGTGGATGTTCCTGG+TGG | - | chr1_1:78009107-78009126 | Msa0046000:intron | 45.0% | |
| !!! | CTTGGTGATGTTTTCAGGCA+AGG | - | chr1_1:78009520-78009539 | Msa0046000:intron | 45.0% |
| GTTGCAGTAGACAGTCCTAT+TGG | - | chr1_1:78009548-78009567 | Msa0046000:intron | 45.0% | |
| CGCAACAACTGATAAAGCTC+AGG | + | chr1_1:78009611-78009630 | None:intergenic | 45.0% | |
| CAGTTGTTGCGTTTCCAACA+TGG | - | chr1_1:78009620-78009639 | Msa0046000:intron | 45.0% | |
| CTAATACCTGTGCTCCATGT+TGG | + | chr1_1:78009637-78009656 | None:intergenic | 45.0% | |
| ! | GTCACTTTAGTGAATGCTGC+GGG | + | chr1_1:78009801-78009820 | None:intergenic | 45.0% |
| GCAGCATTCACTAAAGTGAC+TGG | - | chr1_1:78009801-78009820 | Msa0046000:intron | 45.0% | |
| AAGTGACTGGTGAAGCACAT+TGG | - | chr1_1:78009814-78009833 | Msa0046000:intron | 45.0% | |
| AGTGACTGGTGAAGCACATT+GGG | - | chr1_1:78009815-78009834 | Msa0046000:intron | 45.0% | |
| CCTAGCAATGCTTCTCTTCT+CGG | - | chr1_1:78009898-78009917 | Msa0046000:intron | 45.0% | |
| ACAGGACAGCAAAAACAACC+AGG | - | chr1_1:78010526-78010545 | Msa0046000:intron | 45.0% | |
| CTGTAATACACCCCACTTAG+TGG | + | chr1_1:78010559-78010578 | None:intergenic | 45.0% | |
| CACTAAGTGGGGTGTATTAC+AGG | - | chr1_1:78010557-78010576 | Msa0046000:intron | 45.0% | |
| AACAGTTTGAATCTCCAGCG+AGG | + | chr1_1:78010646-78010665 | None:intergenic | 45.0% | |
| TCGTTTGTCTACGGGAATTG+TGG | - | chr1_1:78010752-78010771 | Msa0046000:intron | 45.0% | |
| ACCCGACCAATACTAGAGAA+TGG | - | chr1_1:78010859-78010878 | Msa0046000:CDS | 45.0% | |
| GCAGCTTTCCAGAAGTCAAA+TGG | + | chr1_1:78011017-78011036 | None:intergenic | 45.0% | |
| ATGTGCCTGCTCCATGTTAA+AGG | - | chr1_1:78011254-78011273 | Msa0046000:five_prime_UTR | 45.0% | |
| TGTGCCTGCTCCATGTTAAA+GGG | - | chr1_1:78011255-78011274 | Msa0046000:five_prime_UTR | 45.0% | |
| AACACCCTTTAACATGGAGC+AGG | + | chr1_1:78011262-78011281 | None:intergenic | 45.0% | |
| !! | CAAATAAATAATTAATTAAA+AGG | + | chr1_1:78007363-78007382 | None:intergenic | 5.0% |
| AGAGAGAGGCTTGTAATCGG+CGG | + | chr1_1:78007166-78007185 | None:intergenic | 50.0% | |
| CGGAGAGAGAGGCTTGTAAT+CGG | + | chr1_1:78007169-78007188 | None:intergenic | 50.0% | |
| GGCAACTCGGACTGAATTAG+TGG | + | chr1_1:78007216-78007235 | None:intergenic | 50.0% | |
| TCATTTGAGCTGCGGCAACT+CGG | + | chr1_1:78007229-78007248 | None:intergenic | 50.0% | |
| GGAGAAATTGGAAGCGAGGT+CGG | + | chr1_1:78007261-78007280 | None:intergenic | 50.0% | |
| AGGTGGAGAAATTGGAAGCG+AGG | + | chr1_1:78007265-78007284 | None:intergenic | 50.0% | |
| ACGAGAGCAGGTGGAGAAAT+TGG | + | chr1_1:78007273-78007292 | None:intergenic | 50.0% | |
| TTTGACAAGACGAGAGCAGG+TGG | + | chr1_1:78007282-78007301 | None:intergenic | 50.0% | |
| TCAAAGGAAGCTGCATCAGC+TGG | - | chr1_1:78007386-78007405 | Msa0046000:intron | 50.0% | |
| GAGAGCTCCATACAGAGGTT+AGG | - | chr1_1:78008779-78008798 | Msa0046000:CDS | 50.0% | |
| GTCAATAGGCTCCGCTATAG+CGG | + | chr1_1:78008968-78008987 | None:intergenic | 50.0% | |
| ATGTGGATGTTCCTGGTGGA+AGG | - | chr1_1:78009111-78009130 | Msa0046000:intron | 50.0% | |
| TGTGGATGTTCCTGGTGGAA+GGG | - | chr1_1:78009112-78009131 | Msa0046000:intron | 50.0% | |
| AGACAGTCCTATTGGGCGTT+TGG | - | chr1_1:78009556-78009575 | Msa0046000:intron | 50.0% | |
| GACAGTCCTATTGGGCGTTT+GGG | - | chr1_1:78009557-78009576 | Msa0046000:intron | 50.0% | |
| !! | CCGAGAAGAGAAGCATTGCT+AGG | + | chr1_1:78009901-78009920 | None:intergenic | 50.0% |
| GCAGCAGCTATGACCTGATA+AGG | + | chr1_1:78010199-78010218 | None:intergenic | 50.0% | |
| ACTGTTGTTGGTCGCTTACC+AGG | - | chr1_1:78010286-78010305 | Msa0046000:CDS | 50.0% | |
| GTATGAGCTGAGGCCTCATA+TGG | - | chr1_1:78010469-78010488 | Msa0046000:intron | 50.0% | |
| GCCTCATATGGCTTACCTCA+GGG | - | chr1_1:78010481-78010500 | Msa0046000:intron | 50.0% | |
| TCCCTGAGGTAAGCCATATG+AGG | + | chr1_1:78010485-78010504 | None:intergenic | 50.0% | |
| TATGGCTTACCTCAGGGAGA+TGG | - | chr1_1:78010487-78010506 | Msa0046000:intron | 50.0% | |
| ATGGCTTACCTCAGGGAGAT+GGG | - | chr1_1:78010488-78010507 | Msa0046000:intron | 50.0% | |
| ! | GGGGAAGGAGTGTGTATTAC+AGG | - | chr1_1:78010508-78010527 | Msa0046000:intron | 50.0% |
| ! | CAGGCCTTTTCCCACTAAGT+GGG | - | chr1_1:78010545-78010564 | Msa0046000:intron | 50.0% |
| ! | AGGCCTTTTCCCACTAAGTG+GGG | - | chr1_1:78010546-78010565 | Msa0046000:intron | 50.0% |
| ACACCCCACTTAGTGGGAAA+AGG | + | chr1_1:78010552-78010571 | None:intergenic | 50.0% | |
| GTGGGGTGTATTACAGGAGA+AGG | - | chr1_1:78010563-78010582 | Msa0046000:intron | 50.0% | |
| GGTGATTTCATTCTCCTCGC+TGG | - | chr1_1:78010629-78010648 | Msa0046000:intron | 50.0% | |
| !! | AGTGGCCATGATTGACTCGC+CGG | + | chr1_1:78007198-78007217 | None:intergenic | 55.0% |
| ATTGGAAGCGAGGTCGGTGA+TGG | + | chr1_1:78007255-78007274 | None:intergenic | 55.0% | |
| AATGAGAAATGGAGCGGGGG+TGG | - | chr1_1:78008380-78008399 | Msa0046000:intron | 55.0% | |
| ATGAGAAATGGAGCGGGGGT+GGG | - | chr1_1:78008381-78008400 | Msa0046000:intron | 55.0% | |
| CTAAGGCCCAAACGCCCAAT+AGG | + | chr1_1:78009566-78009585 | None:intergenic | 55.0% | |
| GCGTTTCCAACATGGAGCAC+AGG | - | chr1_1:78009628-78009647 | Msa0046000:intron | 55.0% | |
| CTGCGGGCACCAATAGTATC+TGG | + | chr1_1:78009785-78009804 | None:intergenic | 55.0% | |
| GTCATAGCTGCTGCACAAGC+TGG | - | chr1_1:78010205-78010224 | Msa0046000:CDS | 55.0% | |
| GATCCTTGGGGGACTGTTGT+TGG | - | chr1_1:78010274-78010293 | Msa0046000:CDS | 55.0% | |
| GGCCTCATATGGCTTACCTC+AGG | - | chr1_1:78010480-78010499 | Msa0046000:intron | 55.0% | |
| TGGCTTACCTCAGGGAGATG+GGG | - | chr1_1:78010489-78010508 | Msa0046000:intron | 55.0% | |
| TTACCTCAGGGAGATGGGGA+AGG | - | chr1_1:78010493-78010512 | Msa0046000:intron | 55.0% | |
| CCACTTAGTGGGAAAAGGCC+TGG | + | chr1_1:78010547-78010566 | None:intergenic | 55.0% | |
| ! | CCAGGCCTTTTCCCACTAAG+TGG | - | chr1_1:78010544-78010563 | Msa0046000:intron | 55.0% |
| AGGCTTGTAATCGGCGGCGA+CGG | + | chr1_1:78007160-78007179 | None:intergenic | 60.0% | |
| TGAGAAATGGAGCGGGGGTG+GGG | - | chr1_1:78008382-78008401 | Msa0046000:intron | 60.0% | |
| CGACCAACAACAGTCCCCCA+AGG | + | chr1_1:78010280-78010299 | None:intergenic | 60.0% | |
| ACTCCTTCCCCATCTCCCTG+AGG | + | chr1_1:78010499-78010518 | None:intergenic | 60.0% | |
| !! | GATTGACTCGCCGGCGACGA+CGG | + | chr1_1:78007189-78007208 | None:intergenic | 65.0% |
| CGTCGCCGGCGAGTCAATCA+TGG | - | chr1_1:78007190-78007209 | Msa0046000:three_prime_UTR | 65.0% | |
| GAGAAATGGAGCGGGGGTGG+GGG | - | chr1_1:78008383-78008402 | Msa0046000:intron | 65.0% | |
| GCCTCTCTCTCCGTCGTCGC+CGG | - | chr1_1:78007176-78007195 | Msa0046000:three_prime_UTR | 70.0% | |
| AATGGAGCGGGGGTGGGGGT+TGG | - | chr1_1:78008387-78008406 | Msa0046000:intron | 70.0% | |
| GCCGGCGACGACGGAGAGAG+AGG | + | chr1_1:78007180-78007199 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78007045 | 78011290 | 78007045 | ID=Msa0046000;Name=Msa0046000 |
| chr1_1 | mRNA | 78007045 | 78011290 | 78007045 | ID=Msa0046000-mRNA-1;Parent=Msa0046000;Name=Msa0046000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=53|1|1|1|1|1|9|244|320 |
| chr1_1 | exon | 78007045 | 78007330 | 78007045 | ID=Msa0046000-mRNA-1:exon:26785;Parent=Msa0046000-mRNA-1 |
| chr1_1 | exon | 78007502 | 78007584 | 78007502 | ID=Msa0046000-mRNA-1:exon:26784;Parent=Msa0046000-mRNA-1 |
| chr1_1 | exon | 78008028 | 78008130 | 78008028 | ID=Msa0046000-mRNA-1:exon:26783;Parent=Msa0046000-mRNA-1 |
| chr1_1 | exon | 78008457 | 78008549 | 78008457 | ID=Msa0046000-mRNA-1:exon:26782;Parent=Msa0046000-mRNA-1 |
| chr1_1 | exon | 78008686 | 78008798 | 78008686 | ID=Msa0046000-mRNA-1:exon:26781;Parent=Msa0046000-mRNA-1 |
| chr1_1 | exon | 78009171 | 78009229 | 78009171 | ID=Msa0046000-mRNA-1:exon:26780;Parent=Msa0046000-mRNA-1 |
| chr1_1 | exon | 78010178 | 78010306 | 78010178 | ID=Msa0046000-mRNA-1:exon:26779;Parent=Msa0046000-mRNA-1 |
| chr1_1 | exon | 78010807 | 78010943 | 78010807 | ID=Msa0046000-mRNA-1:exon:26778;Parent=Msa0046000-mRNA-1 |
| chr1_1 | exon | 78011034 | 78011290 | 78011034 | ID=Msa0046000-mRNA-1:exon:26777;Parent=Msa0046000-mRNA-1 |
| chr1_1 | five_prime_UTR | 78011238 | 78011290 | 78011238 | ID=Msa0046000-mRNA-1:five_prime_utr;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78011034 | 78011237 | 78011034 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78010807 | 78010943 | 78010807 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78010178 | 78010306 | 78010178 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78009171 | 78009229 | 78009171 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78008686 | 78008798 | 78008686 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78008457 | 78008549 | 78008457 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78008028 | 78008130 | 78008028 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78007502 | 78007584 | 78007502 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | CDS | 78007289 | 78007330 | 78007289 | ID=Msa0046000-mRNA-1:cds;Parent=Msa0046000-mRNA-1 |
| chr1_1 | three_prime_UTR | 78007045 | 78007288 | 78007045 | ID=Msa0046000-mRNA-1:three_prime_utr;Parent=Msa0046000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
