Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438690 | XP_003601535.2 | 92.000 | 200 | 3 | 1 | 1 | 187 | 1 | 200 | 1.07e-127 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438690 | sp|C1A3Z5|RL13_GEMAT | 46.218 | 119 | 50 | 2 | 25 | 129 | 14 | 132 | 9.47e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438690 | G7J8V5 | 92.000 | 200 | 3 | 1 | 1 | 187 | 1 | 200 | 5.13e-128 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056470 | Msa0438690 | 0.832432 | 9.486546e-56 | -8.615850e-47 |
| Msa0149200 | Msa0438690 | 0.803394 | 3.560391e-49 | -8.615850e-47 |
| Msa0229760 | Msa0438690 | 0.842694 | 2.211570e-58 | -8.615850e-47 |
| Msa0369450 | Msa0438690 | 0.812153 | 4.891800e-51 | -8.615850e-47 |
| Msa0387730 | Msa0438690 | 0.844695 | 6.446404e-59 | -8.615850e-47 |
| Msa0438690 | Msa0518390 | 0.808762 | 2.641524e-50 | -8.615850e-47 |
| Msa0438690 | Msa0647500 | 0.819166 | 1.339395e-52 | -8.615850e-47 |
| Msa0438690 | Msa0661300 | 0.815336 | 9.739492e-52 | -8.615850e-47 |
| Msa0438690 | Msa0750880 | 0.810410 | 1.168710e-50 | -8.615850e-47 |
| Msa0438690 | Msa0784200 | 0.830246 | 3.272484e-55 | -8.615850e-47 |
| Msa0438690 | Msa0818310 | 0.821466 | 3.978564e-53 | -8.615850e-47 |
| Msa0438690 | Msa0858770 | 0.839127 | 1.908007e-57 | -8.615850e-47 |
| Msa0438690 | Msa0968590 | 0.800641 | 1.310505e-48 | -8.615850e-47 |
| Msa0438690 | Msa1013400 | 0.808170 | 3.532108e-50 | -8.615850e-47 |
| Msa0438690 | Msa1081150 | 0.806474 | 8.082803e-50 | -8.615850e-47 |
| Msa0438690 | Msa1101600 | 0.854171 | 1.469856e-61 | -8.615850e-47 |
| Msa0438690 | Msa1126510 | 0.801785 | 7.641629e-49 | -8.615850e-47 |
| Msa0438690 | Msa1165940 | 0.846987 | 1.537179e-59 | -8.615850e-47 |
| Msa0438690 | Msa1218600 | 0.819165 | 1.340459e-52 | -8.615850e-47 |
| Msa0438690 | Msa1257510 | 0.815758 | 7.847174e-52 | -8.615850e-47 |
| Msa0438690 | Msa1353060 | 0.805201 | 1.496525e-49 | -8.615850e-47 |
| Msa0438690 | Msa1407460 | 0.808014 | 3.813672e-50 | -8.615850e-47 |
| Msa0438690 | Msa1443780 | 0.804874 | 1.752172e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438690 | MtrunA17_Chr3g0120801 | 92.000 | 200 | 3 | 1 | 1 | 187 | 1 | 200 | 9.87e-132 | 367 |
| Msa0438690 | MtrunA17_Chr8g0359571 | 35.043 | 117 | 63 | 1 | 26 | 129 | 104 | 220 | 2.81e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438690 | AT3G01790.1 | 75.281 | 178 | 31 | 1 | 8 | 172 | 14 | 191 | 8.78e-96 | 277 |
| Msa0438690 | AT3G01790.2 | 75.281 | 178 | 31 | 1 | 8 | 172 | 14 | 191 | 8.78e-96 | 277 |
| Msa0438690 | AT3G01790.3 | 73.333 | 120 | 19 | 1 | 8 | 114 | 14 | 133 | 1.82e-58 | 181 |
| Msa0438690 | AT1G78630.1 | 32.800 | 125 | 70 | 2 | 26 | 136 | 105 | 229 | 2.08e-14 | 69.3 |
Find 60 sgRNAs with CRISPR-Local
Find 544 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCAATATGACATTTAT+AGG | 0.198923 | 3_3:-3463451 | None:intergenic |
| TTCGAACCAGACTACCATTT+TGG | 0.239078 | 3_3:+3463584 | Msa0438690:three_prime_UTR |
| CAGGGAAGATCCTTAATTTC+CGG | 0.312788 | 3_3:-3463169 | None:intergenic |
| ATCTTGATGGGCTCCGGTGG+CGG | 0.315099 | 3_3:+3460001 | Msa0438690:CDS |
| ATTAAACGCATTAATCTTGA+TGG | 0.336783 | 3_3:+3459988 | Msa0438690:CDS |
| TCAAATAGCTACTGTAGTTA+TGG | 0.345393 | 3_3:+3461222 | Msa0438690:CDS |
| AATAACATCTGTAGGGTCTT+TGG | 0.350210 | 3_3:-3461635 | None:intergenic |
| AGGACAGGGACCGGAAATTA+AGG | 0.354593 | 3_3:+3463159 | Msa0438690:intron |
| TGGCATTCTAAAGGTACATT+TGG | 0.359024 | 3_3:+3463604 | Msa0438690:three_prime_UTR |
| TCTTGATGGGCTCCGGTGGC+GGG | 0.385945 | 3_3:+3460002 | Msa0438690:CDS |
| AATGATTCGAGCACAGAAAA+AGG | 0.392832 | 3_3:+3463283 | Msa0438690:CDS |
| CAAATAGCTACTGTAGTTAT+GGG | 0.396768 | 3_3:+3461223 | Msa0438690:CDS |
| GTACCTTTAGAATGCCAAAA+TGG | 0.398968 | 3_3:-3463598 | None:intergenic |
| ATGTTCCTCATGCAGGTTCT+CGG | 0.405648 | 3_3:+3461187 | Msa0438690:intron |
| CCTGGTAGTGAGCACCCCTT+TGG | 0.427762 | 3_3:+3463188 | Msa0438690:CDS |
| ATATCTCCATCGTCACGATT+AGG | 0.431994 | 3_3:-3461268 | None:intergenic |
| AGAATGCCAAAATGGTAGTC+TGG | 0.442610 | 3_3:-3463590 | None:intergenic |
| AATCCTTACCTTGAGGTTGA+AGG | 0.443780 | 3_3:-3459803 | None:intergenic |
| TTGTCATTTGAATGAGAAGT+AGG | 0.447814 | 3_3:+3463403 | Msa0438690:three_prime_UTR |
| CCAAAGGGGTGCTCACTACC+AGG | 0.457830 | 3_3:-3463188 | None:intergenic |
| AGAAGAAGAAGAAAGGATCT+TGG | 0.462326 | 3_3:+3459575 | Msa0438690:five_prime_UTR |
| TTCTTGACAATGTTCTTACT+AGG | 0.473885 | 3_3:-3463505 | None:intergenic |
| CATACTATAAATTAAATTTG+AGG | 0.475654 | 3_3:-3459610 | None:intergenic |
| ACATTCAGTCACCTGGCCCT+TGG | 0.487414 | 3_3:-3460034 | None:intergenic |
| GCCAAGGATATTGCTGTGAC+TGG | 0.487743 | 3_3:+3461307 | Msa0438690:CDS |
| CTCATCTCTCGTACTGTCCT+AGG | 0.490690 | 3_3:-3463242 | None:intergenic |
| GTCCTAGGAGGCATCACATA+AGG | 0.492669 | 3_3:-3463227 | None:intergenic |
| TGTTCCTCATGCAGGTTCTC+GGG | 0.496429 | 3_3:+3461188 | Msa0438690:intron |
| AACCTTATGTGATGCCTCCT+AGG | 0.498050 | 3_3:+3463225 | Msa0438690:CDS |
| GCTTTGCGAATAACATCTGT+AGG | 0.508354 | 3_3:-3461643 | None:intergenic |
| GCATTAATCTTGATGGGCTC+CGG | 0.515892 | 3_3:+3459995 | Msa0438690:CDS |
| GTGAGCACCCCTTTGGTGAT+CGG | 0.517843 | 3_3:+3463195 | Msa0438690:CDS |
| CCCAGTCACAGCAATATCCT+TGG | 0.518223 | 3_3:-3461308 | None:intergenic |
| TTCTAGTGGCCGATCACCAA+AGG | 0.519844 | 3_3:-3463204 | None:intergenic |
| AATGTATGTAGGACAGGGAC+CGG | 0.545065 | 3_3:+3463150 | Msa0438690:intron |
| TCTAGTGGCCGATCACCAAA+GGG | 0.547147 | 3_3:-3463203 | None:intergenic |
| AGCTACTGTAGTTATGGGAA+AGG | 0.547157 | 3_3:+3461228 | Msa0438690:CDS |
| TTAAACGCATTAATCTTGAT+GGG | 0.548352 | 3_3:+3459989 | Msa0438690:CDS |
| ATCATTGCACGCCTTGCTCG+TGG | 0.552038 | 3_3:-3463266 | None:intergenic |
| TGGCATCGAAAACCCGCCAC+CGG | 0.554361 | 3_3:-3460014 | None:intergenic |
| TCACGATTAGGAGTATAAGT+TGG | 0.572405 | 3_3:-3461256 | None:intergenic |
| GGTAAACTCCTTCAACCTCA+AGG | 0.594941 | 3_3:+3459795 | Msa0438690:CDS |
| CCTTAAGCAAAGAACTCTGA+AGG | 0.596688 | 3_3:+3461603 | Msa0438690:intron |
| CGGAAATTAAGGATCTTCCC+TGG | 0.598071 | 3_3:+3463170 | Msa0438690:CDS |
| AAGAACTCTGAAGGATCAGA+TGG | 0.606577 | 3_3:+3461612 | Msa0438690:CDS |
| TTAATCTTGATGGGCTCCGG+TGG | 0.608778 | 3_3:+3459998 | Msa0438690:CDS |
| GGCATCACATAAGGTTCTAG+TGG | 0.614175 | 3_3:-3463218 | None:intergenic |
| CTTTGCGAATAACATCTGTA+GGG | 0.616003 | 3_3:-3461642 | None:intergenic |
| TCCTCATGCAGGTTCTCGGG+AGG | 0.625821 | 3_3:+3461191 | Msa0438690:intron |
| TATACTCCTAATCGTGACGA+TGG | 0.626802 | 3_3:+3461262 | Msa0438690:CDS |
| CCAAGGATATTGCTGTGACT+GGG | 0.629076 | 3_3:+3461308 | Msa0438690:CDS |
| GAGAGATGAGACCACGAGCA+AGG | 0.633625 | 3_3:+3463255 | Msa0438690:CDS |
| AAATTAAATTTGAGGTACAA+CGG | 0.637186 | 3_3:-3459602 | None:intergenic |
| GTGCATTGTGCTTAATGCCA+AGG | 0.638542 | 3_3:+3461291 | Msa0438690:CDS |
| AGGATATTGCTGTGACTGGG+AGG | 0.647448 | 3_3:+3461311 | Msa0438690:CDS |
| TGGGAGGAAGCTGACAGACA+AGG | 0.650353 | 3_3:+3461327 | Msa0438690:CDS |
| ATCTCTCGTACTGTCCTAGG+AGG | 0.665987 | 3_3:-3463239 | None:intergenic |
| CAAAGGGGTGCTCACTACCA+GGG | 0.686267 | 3_3:-3463187 | None:intergenic |
| TGAGCAGCGACAGAATGCTG+AGG | 0.718134 | 3_3:+3463328 | Msa0438690:CDS |
| CTAGTGGCCGATCACCAAAG+GGG | 0.770452 | 3_3:-3463202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTAAGTTTATTTTATTTT+AGG | + | chr3_3:3460748-3460767 | Msa0438690:intron | 10.0% |
| !! | TAAAATTATAAATACTACTT+TGG | - | chr3_3:3461414-3461433 | None:intergenic | 10.0% |
| !!! | AAAGTAGTATTTATAATTTT+AGG | + | chr3_3:3461413-3461432 | Msa0438690:intron | 10.0% |
| !!! | AAAATACAAATTTTTAAATC+AGG | + | chr3_3:3462091-3462110 | Msa0438690:intron | 10.0% |
| !!! | AAAAGTTTTTTAAGAAATTA+AGG | - | chr3_3:3462476-3462495 | None:intergenic | 10.0% |
| !! | ATAACTAATTAAAAAGAATA+AGG | - | chr3_3:3463080-3463099 | None:intergenic | 10.0% |
| !!! | CTTTAAGTTTATTTTATTTT+AGG | + | chr3_3:3460748-3460767 | Msa0438690:intron | 10.0% |
| !! | TAAAATTATAAATACTACTT+TGG | - | chr3_3:3461414-3461433 | None:intergenic | 10.0% |
| !!! | AAAGTAGTATTTATAATTTT+AGG | + | chr3_3:3461413-3461432 | Msa0438690:intron | 10.0% |
| !!! | AAAATACAAATTTTTAAATC+AGG | + | chr3_3:3462091-3462110 | Msa0438690:intron | 10.0% |
| !!! | AAAAGTTTTTTAAGAAATTA+AGG | - | chr3_3:3462476-3462495 | None:intergenic | 10.0% |
| !! | ATAACTAATTAAAAAGAATA+AGG | - | chr3_3:3463080-3463099 | None:intergenic | 10.0% |
| !! | CATACTATAAATTAAATTTG+AGG | - | chr3_3:3459613-3459632 | None:intergenic | 15.0% |
| !! | TATATCATAAATAATGACAA+GGG | - | chr3_3:3459838-3459857 | None:intergenic | 15.0% |
| !! | ACATTAAAATCATAATTTCA+TGG | - | chr3_3:3460062-3460081 | None:intergenic | 15.0% |
| !!! | ACATTTTGAAACAATTTATT+GGG | + | chr3_3:3461008-3461027 | Msa0438690:intron | 15.0% |
| !!! | TATAATTGTTGTTTTGTATA+TGG | + | chr3_3:3461505-3461524 | Msa0438690:intron | 15.0% |
| !!! | AAAGTATTGAATTAAATTAC+TGG | + | chr3_3:3461745-3461764 | Msa0438690:intron | 15.0% |
| !! | ATGAAAAAAAATAATCATTC+TGG | - | chr3_3:3461774-3461793 | None:intergenic | 15.0% |
| !!! | TGATTATTTTTTTTCATTGT+TGG | + | chr3_3:3461777-3461796 | Msa0438690:intron | 15.0% |
| !!! | TATTCTTTTGAATTGTAATT+TGG | - | chr3_3:3462178-3462197 | None:intergenic | 15.0% |
| !! | AAGAATAAAAGAAAATAATG+AGG | + | chr3_3:3462191-3462210 | Msa0438690:intron | 15.0% |
| !!! | AAATTTTTCACAATTGTAAA+CGG | + | chr3_3:3462245-3462264 | Msa0438690:intron | 15.0% |
| !! | TATATAAAATAAAATTCACC+AGG | + | chr3_3:3462942-3462961 | Msa0438690:intron | 15.0% |
| !! | CATACTATAAATTAAATTTG+AGG | - | chr3_3:3459613-3459632 | None:intergenic | 15.0% |
| !! | TATATCATAAATAATGACAA+GGG | - | chr3_3:3459838-3459857 | None:intergenic | 15.0% |
| !! | ACATTAAAATCATAATTTCA+TGG | - | chr3_3:3460062-3460081 | None:intergenic | 15.0% |
| !!! | ACATTTTGAAACAATTTATT+GGG | + | chr3_3:3461008-3461027 | Msa0438690:intron | 15.0% |
| !!! | TATAATTGTTGTTTTGTATA+TGG | + | chr3_3:3461505-3461524 | Msa0438690:intron | 15.0% |
| !!! | AAAGTATTGAATTAAATTAC+TGG | + | chr3_3:3461745-3461764 | Msa0438690:intron | 15.0% |
| !! | ATGAAAAAAAATAATCATTC+TGG | - | chr3_3:3461774-3461793 | None:intergenic | 15.0% |
| !!! | TGATTATTTTTTTTCATTGT+TGG | + | chr3_3:3461777-3461796 | Msa0438690:intron | 15.0% |
| !!! | TATTCTTTTGAATTGTAATT+TGG | - | chr3_3:3462178-3462197 | None:intergenic | 15.0% |
| !! | AAGAATAAAAGAAAATAATG+AGG | + | chr3_3:3462191-3462210 | Msa0438690:intron | 15.0% |
| !!! | AAATTTTTCACAATTGTAAA+CGG | + | chr3_3:3462245-3462264 | Msa0438690:intron | 15.0% |
| !! | TATATAAAATAAAATTCACC+AGG | + | chr3_3:3462942-3462961 | Msa0438690:intron | 15.0% |
| !!! | AAATTAAATTTGAGGTACAA+CGG | - | chr3_3:3459605-3459624 | None:intergenic | 20.0% |
| !!! | TATTTTTTTGAATAGGAAGA+AGG | + | chr3_3:3459740-3459759 | Msa0438690:intron | 20.0% |
| !! | ATATCATAAATAATGACAAG+GGG | - | chr3_3:3459837-3459856 | None:intergenic | 20.0% |
| !! | CTATATCATAAATAATGACA+AGG | - | chr3_3:3459839-3459858 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTTGAAGTATG+TGG | + | chr3_3:3460090-3460109 | Msa0438690:intron | 20.0% |
| !! | ATGAAAATATTAGAGAGATT+TGG | + | chr3_3:3460434-3460453 | Msa0438690:intron | 20.0% |
| !! | TGAAAATATTAGAGAGATTT+GGG | + | chr3_3:3460435-3460454 | Msa0438690:intron | 20.0% |
| !!! | GACATTTTGAAACAATTTAT+TGG | + | chr3_3:3461007-3461026 | Msa0438690:intron | 20.0% |
| !! | CAAAACAACAATTATAAAAC+TGG | - | chr3_3:3461501-3461520 | None:intergenic | 20.0% |
| !!! | TTTTTCTATGGATTCTAAAA+TGG | + | chr3_3:3462339-3462358 | Msa0438690:intron | 20.0% |
| !!! | TTGCCCAATTTTTTAAAATT+CGG | + | chr3_3:3462643-3462662 | Msa0438690:intron | 20.0% |
| !!! | TTGTTTCTTCTTTTTATCAT+AGG | + | chr3_3:3462835-3462854 | Msa0438690:intron | 20.0% |
| !!! | AAATTAAATTTGAGGTACAA+CGG | - | chr3_3:3459605-3459624 | None:intergenic | 20.0% |
| !!! | TATTTTTTTGAATAGGAAGA+AGG | + | chr3_3:3459740-3459759 | Msa0438690:intron | 20.0% |
| !! | ATATCATAAATAATGACAAG+GGG | - | chr3_3:3459837-3459856 | None:intergenic | 20.0% |
| !! | CTATATCATAAATAATGACA+AGG | - | chr3_3:3459839-3459858 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTTGAAGTATG+TGG | + | chr3_3:3460090-3460109 | Msa0438690:intron | 20.0% |
| !! | ATGAAAATATTAGAGAGATT+TGG | + | chr3_3:3460434-3460453 | Msa0438690:intron | 20.0% |
| !! | TGAAAATATTAGAGAGATTT+GGG | + | chr3_3:3460435-3460454 | Msa0438690:intron | 20.0% |
| !!! | GACATTTTGAAACAATTTAT+TGG | + | chr3_3:3461007-3461026 | Msa0438690:intron | 20.0% |
| !! | CAAAACAACAATTATAAAAC+TGG | - | chr3_3:3461501-3461520 | None:intergenic | 20.0% |
| !!! | TTTTTCTATGGATTCTAAAA+TGG | + | chr3_3:3462339-3462358 | Msa0438690:intron | 20.0% |
| !!! | TTGCCCAATTTTTTAAAATT+CGG | + | chr3_3:3462643-3462662 | Msa0438690:intron | 20.0% |
| !!! | TTGTTTCTTCTTTTTATCAT+AGG | + | chr3_3:3462835-3462854 | Msa0438690:intron | 20.0% |
| !!! | GTTAAAAATGGAGTCTTTTT+TGG | + | chr3_3:3459913-3459932 | Msa0438690:intron | 25.0% |
| ! | ATTAAACGCATTAATCTTGA+TGG | + | chr3_3:3459988-3460007 | Msa0438690:CDS | 25.0% |
| ! | TTAAACGCATTAATCTTGAT+GGG | + | chr3_3:3459989-3460008 | Msa0438690:CDS | 25.0% |
| ! | TAGACTTGTAGAATATCTTA+TGG | + | chr3_3:3460132-3460151 | Msa0438690:intron | 25.0% |
| !!! | TATCTTATGGTTTTACGTTT+TGG | + | chr3_3:3460145-3460164 | Msa0438690:intron | 25.0% |
| ! | AGAATAAAATGCGAGATAAT+AGG | + | chr3_3:3460179-3460198 | Msa0438690:intron | 25.0% |
| ! | GAGATAATAGGTTTATGAAA+TGG | + | chr3_3:3460191-3460210 | Msa0438690:intron | 25.0% |
| ! | TATAGTATTCACATCTGTAT+TGG | - | chr3_3:3460343-3460362 | None:intergenic | 25.0% |
| !!! | ATAGTTTCTCTAGTTTTTCT+AGG | - | chr3_3:3460596-3460615 | None:intergenic | 25.0% |
| !!! | GGATACAACACATTTTAATT+AGG | - | chr3_3:3460782-3460801 | None:intergenic | 25.0% |
| !! | GTTTTACATTTGTCCTTTTT+AGG | + | chr3_3:3460805-3460824 | Msa0438690:intron | 25.0% |
| ! | TGAAAAGTTATCCTCATAAT+AGG | + | chr3_3:3460828-3460847 | Msa0438690:intron | 25.0% |
| ! | AAGTAATTAGTTACTTCTCT+TGG | + | chr3_3:3460954-3460973 | Msa0438690:intron | 25.0% |
| ! | TTGAGCCATGAATTATTTAT+TGG | + | chr3_3:3460981-3461000 | Msa0438690:intron | 25.0% |
| ! | TAGGCTTCTTATAAATCAAA+TGG | + | chr3_3:3461432-3461451 | Msa0438690:intron | 25.0% |
| !! | GGTAAAATTTCTAAGAAGAT+AGG | - | chr3_3:3461477-3461496 | None:intergenic | 25.0% |
| ! | AACAACAATTATAAAACTGG+AGG | - | chr3_3:3461498-3461517 | None:intergenic | 25.0% |
| !! | ACTTTATAGACCAATGTTTT+TGG | + | chr3_3:3461709-3461728 | Msa0438690:intron | 25.0% |
| !!! | AAAAGCATTTCCAAAAACAT+TGG | - | chr3_3:3461722-3461741 | None:intergenic | 25.0% |
| ! | GTATTGAATTAAATTACTGG+TGG | + | chr3_3:3461748-3461767 | Msa0438690:intron | 25.0% |
| !!! | TTCTATTTTTGGTCTCAAAT+AGG | - | chr3_3:3461826-3461845 | None:intergenic | 25.0% |
| !! | TGTTCGGAATTTTCTATTTT+TGG | - | chr3_3:3461837-3461856 | None:intergenic | 25.0% |
| !!! | TTAGGGTCTTTTGATTATTT+TGG | - | chr3_3:3462071-3462090 | None:intergenic | 25.0% |
| ! | ATCCATTCTAAACTGTAAAT+TGG | + | chr3_3:3462398-3462417 | Msa0438690:intron | 25.0% |
| ! | TCCATTCTAAACTGTAAATT+GGG | + | chr3_3:3462399-3462418 | Msa0438690:intron | 25.0% |
| ! | TTTGTTACATTATTCAAGCA+AGG | - | chr3_3:3462524-3462543 | None:intergenic | 25.0% |
| ! | TAGGAATGTTAATTATGCTA+TGG | - | chr3_3:3462565-3462584 | None:intergenic | 25.0% |
| !! | AATTCTTCAAGTTCATCATT+AGG | - | chr3_3:3462584-3462603 | None:intergenic | 25.0% |
| !! | CTTGAAGAATTACATTTTAG+AGG | + | chr3_3:3462593-3462612 | Msa0438690:intron | 25.0% |
| !!! | TGCCCAATTTTTTAAAATTC+GGG | + | chr3_3:3462644-3462663 | Msa0438690:intron | 25.0% |
| ! | ATACTACTCAAGTTAAACAT+TGG | - | chr3_3:3462863-3462882 | None:intergenic | 25.0% |
| ! | TTTCGATTATGAAAGAAAGA+AGG | + | chr3_3:3462894-3462913 | Msa0438690:intron | 25.0% |
| ! | TTCGATTATGAAAGAAAGAA+GGG | + | chr3_3:3462895-3462914 | Msa0438690:intron | 25.0% |
| ! | ATAAGCTATAACAAGATGAA+AGG | - | chr3_3:3463056-3463075 | None:intergenic | 25.0% |
| ! | ATGCAATATTGAAGAATTGA+TGG | + | chr3_3:3463098-3463117 | Msa0438690:intron | 25.0% |
| ! | CAACTCAATATGACATTTAT+AGG | - | chr3_3:3463454-3463473 | None:intergenic | 25.0% |
| !!! | GTTAAAAATGGAGTCTTTTT+TGG | + | chr3_3:3459913-3459932 | Msa0438690:intron | 25.0% |
| ! | ATTAAACGCATTAATCTTGA+TGG | + | chr3_3:3459988-3460007 | Msa0438690:CDS | 25.0% |
| ! | TTAAACGCATTAATCTTGAT+GGG | + | chr3_3:3459989-3460008 | Msa0438690:CDS | 25.0% |
| ! | TAGACTTGTAGAATATCTTA+TGG | + | chr3_3:3460132-3460151 | Msa0438690:intron | 25.0% |
| !!! | TATCTTATGGTTTTACGTTT+TGG | + | chr3_3:3460145-3460164 | Msa0438690:intron | 25.0% |
| ! | AGAATAAAATGCGAGATAAT+AGG | + | chr3_3:3460179-3460198 | Msa0438690:intron | 25.0% |
| ! | GAGATAATAGGTTTATGAAA+TGG | + | chr3_3:3460191-3460210 | Msa0438690:intron | 25.0% |
| ! | TATAGTATTCACATCTGTAT+TGG | - | chr3_3:3460343-3460362 | None:intergenic | 25.0% |
| !!! | ATAGTTTCTCTAGTTTTTCT+AGG | - | chr3_3:3460596-3460615 | None:intergenic | 25.0% |
| !!! | GGATACAACACATTTTAATT+AGG | - | chr3_3:3460782-3460801 | None:intergenic | 25.0% |
| !! | GTTTTACATTTGTCCTTTTT+AGG | + | chr3_3:3460805-3460824 | Msa0438690:intron | 25.0% |
| ! | TGAAAAGTTATCCTCATAAT+AGG | + | chr3_3:3460828-3460847 | Msa0438690:intron | 25.0% |
| ! | AAGTAATTAGTTACTTCTCT+TGG | + | chr3_3:3460954-3460973 | Msa0438690:intron | 25.0% |
| ! | TTGAGCCATGAATTATTTAT+TGG | + | chr3_3:3460981-3461000 | Msa0438690:intron | 25.0% |
| ! | TAGGCTTCTTATAAATCAAA+TGG | + | chr3_3:3461432-3461451 | Msa0438690:intron | 25.0% |
| !! | GGTAAAATTTCTAAGAAGAT+AGG | - | chr3_3:3461477-3461496 | None:intergenic | 25.0% |
| ! | AACAACAATTATAAAACTGG+AGG | - | chr3_3:3461498-3461517 | None:intergenic | 25.0% |
| !! | ACTTTATAGACCAATGTTTT+TGG | + | chr3_3:3461709-3461728 | Msa0438690:intron | 25.0% |
| !!! | AAAAGCATTTCCAAAAACAT+TGG | - | chr3_3:3461722-3461741 | None:intergenic | 25.0% |
| ! | GTATTGAATTAAATTACTGG+TGG | + | chr3_3:3461748-3461767 | Msa0438690:intron | 25.0% |
| !!! | TTCTATTTTTGGTCTCAAAT+AGG | - | chr3_3:3461826-3461845 | None:intergenic | 25.0% |
| !! | TGTTCGGAATTTTCTATTTT+TGG | - | chr3_3:3461837-3461856 | None:intergenic | 25.0% |
| !!! | TTAGGGTCTTTTGATTATTT+TGG | - | chr3_3:3462071-3462090 | None:intergenic | 25.0% |
| ! | ATCCATTCTAAACTGTAAAT+TGG | + | chr3_3:3462398-3462417 | Msa0438690:intron | 25.0% |
| ! | TCCATTCTAAACTGTAAATT+GGG | + | chr3_3:3462399-3462418 | Msa0438690:intron | 25.0% |
| ! | TTTGTTACATTATTCAAGCA+AGG | - | chr3_3:3462524-3462543 | None:intergenic | 25.0% |
| ! | TAGGAATGTTAATTATGCTA+TGG | - | chr3_3:3462565-3462584 | None:intergenic | 25.0% |
| !! | AATTCTTCAAGTTCATCATT+AGG | - | chr3_3:3462584-3462603 | None:intergenic | 25.0% |
| !! | CTTGAAGAATTACATTTTAG+AGG | + | chr3_3:3462593-3462612 | Msa0438690:intron | 25.0% |
| !!! | TGCCCAATTTTTTAAAATTC+GGG | + | chr3_3:3462644-3462663 | Msa0438690:intron | 25.0% |
| ! | ATACTACTCAAGTTAAACAT+TGG | - | chr3_3:3462863-3462882 | None:intergenic | 25.0% |
| ! | TTTCGATTATGAAAGAAAGA+AGG | + | chr3_3:3462894-3462913 | Msa0438690:intron | 25.0% |
| ! | TTCGATTATGAAAGAAAGAA+GGG | + | chr3_3:3462895-3462914 | Msa0438690:intron | 25.0% |
| ! | ATAAGCTATAACAAGATGAA+AGG | - | chr3_3:3463056-3463075 | None:intergenic | 25.0% |
| ! | ATGCAATATTGAAGAATTGA+TGG | + | chr3_3:3463098-3463117 | Msa0438690:intron | 25.0% |
| ! | CAACTCAATATGACATTTAT+AGG | - | chr3_3:3463454-3463473 | None:intergenic | 25.0% |
| AAAGAGAAGAAGAAGAAGAA+AGG | + | chr3_3:3459568-3459587 | Msa0438690:five_prime_UTR | 30.0% | |
| GAAATAGAGTGTAGAAACAT+AGG | - | chr3_3:3459684-3459703 | None:intergenic | 30.0% | |
| ! | ATCTGAAGCAAAAATGAAGA+TGG | + | chr3_3:3459774-3459793 | Msa0438690:exon | 30.0% |
| TTTGAAAAATCCTTACCTTG+AGG | - | chr3_3:3459813-3459832 | None:intergenic | 30.0% | |
| !! | TGTTCTGGGTTAGTTAAAAA+TGG | + | chr3_3:3459901-3459920 | Msa0438690:intron | 30.0% |
| GTACTAGTTAAAGAACAGTA+AGG | + | chr3_3:3460261-3460280 | Msa0438690:intron | 30.0% | |
| TGATAGAAACTAGACTTAAG+TGG | + | chr3_3:3460480-3460499 | Msa0438690:intron | 30.0% | |
| AAAGGACAAATGTAAAACAG+TGG | - | chr3_3:3460803-3460822 | None:intergenic | 30.0% | |
| ! | GGATAACTTTTCACCTAAAA+AGG | - | chr3_3:3460821-3460840 | None:intergenic | 30.0% |
| AATTGGCTATTCCTATTATG+AGG | - | chr3_3:3460842-3460861 | None:intergenic | 30.0% | |
| GTCTAGATTATGAGTGAAAT+TGG | - | chr3_3:3460859-3460878 | None:intergenic | 30.0% | |
| AATTAGTTACTTCTCTTGGA+AGG | + | chr3_3:3460958-3460977 | Msa0438690:intron | 30.0% | |
| AGCCATGAATTATTTATTGG+CGG | + | chr3_3:3460984-3461003 | Msa0438690:intron | 30.0% | |
| TTCATAAAATGTCCAAAGCT+CGG | - | chr3_3:3461080-3461099 | None:intergenic | 30.0% | |
| TCAAATAGCTACTGTAGTTA+TGG | + | chr3_3:3461222-3461241 | Msa0438690:CDS | 30.0% | |
| CAAATAGCTACTGTAGTTAT+GGG | + | chr3_3:3461223-3461242 | Msa0438690:CDS | 30.0% | |
| TGAATAATGCCAAAAGATTG+TGG | - | chr3_3:3461540-3461559 | None:intergenic | 30.0% | |
| ACTATTCTGACATAAAGTAG+TGG | + | chr3_3:3461561-3461580 | Msa0438690:intron | 30.0% | |
| !!! | ACATCACGTAAGTTGTTTTT+AGG | - | chr3_3:3461685-3461704 | None:intergenic | 30.0% |
| TTAGACTTGATTCTTATGGT+AGG | - | chr3_3:3461911-3461930 | None:intergenic | 30.0% | |
| TACCATAAGAATCAAGTCTA+AGG | + | chr3_3:3461910-3461929 | Msa0438690:intron | 30.0% | |
| TTCCTTAGACTTGATTCTTA+TGG | - | chr3_3:3461915-3461934 | None:intergenic | 30.0% | |
| TGGAGAACAAAATTGAACTT+GGG | + | chr3_3:3461957-3461976 | Msa0438690:intron | 30.0% | |
| !!! | CACTGTTTTGAAAAACCATT+AGG | - | chr3_3:3461989-3462008 | None:intergenic | 30.0% |
| ! | TTGTTATAATGCTACTTGCA+GGG | - | chr3_3:3462012-3462031 | None:intergenic | 30.0% |
| AGTAGCATTATAACAACTTG+TGG | + | chr3_3:3462016-3462035 | Msa0438690:intron | 30.0% | |
| TCTTATAGTCTAACCCATAA+AGG | + | chr3_3:3462135-3462154 | Msa0438690:intron | 30.0% | |
| TTGCTCATATTAGATTGATG+TGG | - | chr3_3:3462450-3462469 | None:intergenic | 30.0% | |
| ATTATTCAAGCAAGGTTTAC+CGG | - | chr3_3:3462516-3462535 | None:intergenic | 30.0% | |
| !!! | GCCCAATTTTTTAAAATTCG+GGG | + | chr3_3:3462645-3462664 | Msa0438690:intron | 30.0% |
| !! | GCCCCGAATTTTAAAAAATT+GGG | - | chr3_3:3462649-3462668 | None:intergenic | 30.0% |
| !! | TGCCCCGAATTTTAAAAAAT+TGG | - | chr3_3:3462650-3462669 | None:intergenic | 30.0% |
| GAAACAACAAATCATGAAGT+TGG | - | chr3_3:3462822-3462841 | None:intergenic | 30.0% | |
| GAAAACAATTCTTGAGCAAT+AGG | - | chr3_3:3463005-3463024 | None:intergenic | 30.0% | |
| GCATTATTGCTAATGTATGT+AGG | + | chr3_3:3463139-3463158 | Msa0438690:intron | 30.0% | |
| TAGCAAAAAGAGTGAAACAT+AGG | + | chr3_3:3463361-3463380 | Msa0438690:CDS | 30.0% | |
| ! | TTGTCATTTGAATGAGAAGT+AGG | + | chr3_3:3463403-3463422 | Msa0438690:three_prime_UTR | 30.0% |
| TTCTTGACAATGTTCTTACT+AGG | - | chr3_3:3463508-3463527 | None:intergenic | 30.0% | |
| AAAGAGAAGAAGAAGAAGAA+AGG | + | chr3_3:3459568-3459587 | Msa0438690:five_prime_UTR | 30.0% | |
| GAAATAGAGTGTAGAAACAT+AGG | - | chr3_3:3459684-3459703 | None:intergenic | 30.0% | |
| ! | ATCTGAAGCAAAAATGAAGA+TGG | + | chr3_3:3459774-3459793 | Msa0438690:exon | 30.0% |
| TTTGAAAAATCCTTACCTTG+AGG | - | chr3_3:3459813-3459832 | None:intergenic | 30.0% | |
| !! | TGTTCTGGGTTAGTTAAAAA+TGG | + | chr3_3:3459901-3459920 | Msa0438690:intron | 30.0% |
| GTACTAGTTAAAGAACAGTA+AGG | + | chr3_3:3460261-3460280 | Msa0438690:intron | 30.0% | |
| TGATAGAAACTAGACTTAAG+TGG | + | chr3_3:3460480-3460499 | Msa0438690:intron | 30.0% | |
| AAAGGACAAATGTAAAACAG+TGG | - | chr3_3:3460803-3460822 | None:intergenic | 30.0% | |
| ! | GGATAACTTTTCACCTAAAA+AGG | - | chr3_3:3460821-3460840 | None:intergenic | 30.0% |
| AATTGGCTATTCCTATTATG+AGG | - | chr3_3:3460842-3460861 | None:intergenic | 30.0% | |
| GTCTAGATTATGAGTGAAAT+TGG | - | chr3_3:3460859-3460878 | None:intergenic | 30.0% | |
| AATTAGTTACTTCTCTTGGA+AGG | + | chr3_3:3460958-3460977 | Msa0438690:intron | 30.0% | |
| AGCCATGAATTATTTATTGG+CGG | + | chr3_3:3460984-3461003 | Msa0438690:intron | 30.0% | |
| TTCATAAAATGTCCAAAGCT+CGG | - | chr3_3:3461080-3461099 | None:intergenic | 30.0% | |
| TCAAATAGCTACTGTAGTTA+TGG | + | chr3_3:3461222-3461241 | Msa0438690:CDS | 30.0% | |
| CAAATAGCTACTGTAGTTAT+GGG | + | chr3_3:3461223-3461242 | Msa0438690:CDS | 30.0% | |
| TGAATAATGCCAAAAGATTG+TGG | - | chr3_3:3461540-3461559 | None:intergenic | 30.0% | |
| ACTATTCTGACATAAAGTAG+TGG | + | chr3_3:3461561-3461580 | Msa0438690:intron | 30.0% | |
| !!! | ACATCACGTAAGTTGTTTTT+AGG | - | chr3_3:3461685-3461704 | None:intergenic | 30.0% |
| TTAGACTTGATTCTTATGGT+AGG | - | chr3_3:3461911-3461930 | None:intergenic | 30.0% | |
| TACCATAAGAATCAAGTCTA+AGG | + | chr3_3:3461910-3461929 | Msa0438690:intron | 30.0% | |
| TTCCTTAGACTTGATTCTTA+TGG | - | chr3_3:3461915-3461934 | None:intergenic | 30.0% | |
| TGGAGAACAAAATTGAACTT+GGG | + | chr3_3:3461957-3461976 | Msa0438690:intron | 30.0% | |
| !!! | CACTGTTTTGAAAAACCATT+AGG | - | chr3_3:3461989-3462008 | None:intergenic | 30.0% |
| ! | TTGTTATAATGCTACTTGCA+GGG | - | chr3_3:3462012-3462031 | None:intergenic | 30.0% |
| AGTAGCATTATAACAACTTG+TGG | + | chr3_3:3462016-3462035 | Msa0438690:intron | 30.0% | |
| TCTTATAGTCTAACCCATAA+AGG | + | chr3_3:3462135-3462154 | Msa0438690:intron | 30.0% | |
| TTGCTCATATTAGATTGATG+TGG | - | chr3_3:3462450-3462469 | None:intergenic | 30.0% | |
| ATTATTCAAGCAAGGTTTAC+CGG | - | chr3_3:3462516-3462535 | None:intergenic | 30.0% | |
| !!! | GCCCAATTTTTTAAAATTCG+GGG | + | chr3_3:3462645-3462664 | Msa0438690:intron | 30.0% |
| !! | GCCCCGAATTTTAAAAAATT+GGG | - | chr3_3:3462649-3462668 | None:intergenic | 30.0% |
| !! | TGCCCCGAATTTTAAAAAAT+TGG | - | chr3_3:3462650-3462669 | None:intergenic | 30.0% |
| GAAACAACAAATCATGAAGT+TGG | - | chr3_3:3462822-3462841 | None:intergenic | 30.0% | |
| GAAAACAATTCTTGAGCAAT+AGG | - | chr3_3:3463005-3463024 | None:intergenic | 30.0% | |
| GCATTATTGCTAATGTATGT+AGG | + | chr3_3:3463139-3463158 | Msa0438690:intron | 30.0% | |
| TAGCAAAAAGAGTGAAACAT+AGG | + | chr3_3:3463361-3463380 | Msa0438690:CDS | 30.0% | |
| ! | TTGTCATTTGAATGAGAAGT+AGG | + | chr3_3:3463403-3463422 | Msa0438690:three_prime_UTR | 30.0% |
| TTCTTGACAATGTTCTTACT+AGG | - | chr3_3:3463508-3463527 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAAGGATCT+TGG | + | chr3_3:3459575-3459594 | Msa0438690:five_prime_UTR | 35.0% | |
| ! | GTTGCATTTTCACAAACACT+TGG | - | chr3_3:3459880-3459899 | None:intergenic | 35.0% |
| ! | TGTGAAAATGCAACTTGTTC+TGG | + | chr3_3:3459886-3459905 | Msa0438690:intron | 35.0% |
| ! | GTGAAAATGCAACTTGTTCT+GGG | + | chr3_3:3459887-3459906 | Msa0438690:intron | 35.0% |
| ! | GTTTTTGTGTTTTCAGAGAG+CGG | + | chr3_3:3459957-3459976 | Msa0438690:intron | 35.0% |
| ATGCCTGTGTCTATATTGAA+TGG | + | chr3_3:3460391-3460410 | Msa0438690:intron | 35.0% | |
| ACTTAAGTGGTTTATGCATG+TGG | + | chr3_3:3460493-3460512 | Msa0438690:intron | 35.0% | |
| AGATCTAGAGATCAATGAGA+TGG | + | chr3_3:3460622-3460641 | Msa0438690:intron | 35.0% | |
| CAATGAGATGGAGAAAGATA+TGG | + | chr3_3:3460634-3460653 | Msa0438690:intron | 35.0% | |
| TCATGTAGGGGAATAAGATT+TGG | + | chr3_3:3460688-3460707 | Msa0438690:intron | 35.0% | |
| ! | GATGTTGATGTTGTCTCTTT+TGG | + | chr3_3:3460713-3460732 | Msa0438690:intron | 35.0% |
| ! | TGATGTTGTCTCTTTTGGTA+AGG | + | chr3_3:3460718-3460737 | Msa0438690:intron | 35.0% |
| GCCATGAATTATTTATTGGC+GGG | + | chr3_3:3460985-3461004 | Msa0438690:intron | 35.0% | |
| TCCCGCCAATAAATAATTCA+TGG | - | chr3_3:3460989-3461008 | None:intergenic | 35.0% | |
| TCATAAAATGTCCAAAGCTC+GGG | - | chr3_3:3461079-3461098 | None:intergenic | 35.0% | |
| !! | ATGAACTTTTGTTTAGCGTC+TGG | + | chr3_3:3461095-3461114 | Msa0438690:intron | 35.0% |
| ! | TCACGATTAGGAGTATAAGT+TGG | - | chr3_3:3461259-3461278 | None:intergenic | 35.0% |
| ! | TTTCTTGTGCCACAATCTTT+TGG | + | chr3_3:3461528-3461547 | Msa0438690:intron | 35.0% |
| AATAACATCTGTAGGGTCTT+TGG | - | chr3_3:3461638-3461657 | None:intergenic | 35.0% | |
| CTTTGCGAATAACATCTGTA+GGG | - | chr3_3:3461645-3461664 | None:intergenic | 35.0% | |
| CGATCTCATTTCATACTGTT+CGG | - | chr3_3:3461853-3461872 | None:intergenic | 35.0% | |
| CAGTATGAAATGAGATCGTA+AGG | + | chr3_3:3461855-3461874 | Msa0438690:intron | 35.0% | |
| GTGGAGAACAAAATTGAACT+TGG | + | chr3_3:3461956-3461975 | Msa0438690:intron | 35.0% | |
| GGAGAACAAAATTGAACTTG+GGG | + | chr3_3:3461958-3461977 | Msa0438690:intron | 35.0% | |
| AACAAAATTGAACTTGGGGT+AGG | + | chr3_3:3461962-3461981 | Msa0438690:intron | 35.0% | |
| ! | GTTGTTATAATGCTACTTGC+AGG | - | chr3_3:3462013-3462032 | None:intergenic | 35.0% |
| AATTGTAATTTGGCCCCAAA+TGG | - | chr3_3:3462168-3462187 | None:intergenic | 35.0% | |
| AACTATTCATCCTATGTTGC+TGG | + | chr3_3:3462298-3462317 | Msa0438690:intron | 35.0% | |
| !! | TCTCTTGACTCGTTTTTCTA+TGG | + | chr3_3:3462327-3462346 | Msa0438690:intron | 35.0% |
| AAGTTCAACAGAGTCATTAG+AGG | - | chr3_3:3462369-3462388 | None:intergenic | 35.0% | |
| GCCCAATTTACAGTTTAGAA+TGG | - | chr3_3:3462403-3462422 | None:intergenic | 35.0% | |
| TTGATGTGGAATGATGAAAG+TGG | - | chr3_3:3462436-3462455 | None:intergenic | 35.0% | |
| ! | AGGCCAAGTGAAAGTTTTTA+GGG | + | chr3_3:3462613-3462632 | Msa0438690:intron | 35.0% |
| TCTCCCTAAAAACTTTCACT+TGG | - | chr3_3:3462619-3462638 | None:intergenic | 35.0% | |
| ! | TATGAAAGAAAGAAGGGCAT+TGG | + | chr3_3:3462901-3462920 | Msa0438690:intron | 35.0% |
| !! | ATGAAAGAAAGAAGGGCATT+GGG | + | chr3_3:3462902-3462921 | Msa0438690:intron | 35.0% |
| ATTGCTAATGTATGTAGGAC+AGG | + | chr3_3:3463144-3463163 | Msa0438690:intron | 35.0% | |
| TTGCTAATGTATGTAGGACA+GGG | + | chr3_3:3463145-3463164 | Msa0438690:intron | 35.0% | |
| AATGATTCGAGCACAGAAAA+AGG | + | chr3_3:3463283-3463302 | Msa0438690:CDS | 35.0% | |
| !! | CTACCATTTTGGCATTCTAA+AGG | + | chr3_3:3463595-3463614 | Msa0438690:three_prime_UTR | 35.0% |
| !! | GTACCTTTAGAATGCCAAAA+TGG | - | chr3_3:3463601-3463620 | None:intergenic | 35.0% |
| ! | TGGCATTCTAAAGGTACATT+TGG | + | chr3_3:3463604-3463623 | Msa0438690:three_prime_UTR | 35.0% |
| AGAAGAAGAAGAAAGGATCT+TGG | + | chr3_3:3459575-3459594 | Msa0438690:five_prime_UTR | 35.0% | |
| ! | GTTGCATTTTCACAAACACT+TGG | - | chr3_3:3459880-3459899 | None:intergenic | 35.0% |
| ! | TGTGAAAATGCAACTTGTTC+TGG | + | chr3_3:3459886-3459905 | Msa0438690:intron | 35.0% |
| ! | GTGAAAATGCAACTTGTTCT+GGG | + | chr3_3:3459887-3459906 | Msa0438690:intron | 35.0% |
| ! | GTTTTTGTGTTTTCAGAGAG+CGG | + | chr3_3:3459957-3459976 | Msa0438690:intron | 35.0% |
| ATGCCTGTGTCTATATTGAA+TGG | + | chr3_3:3460391-3460410 | Msa0438690:intron | 35.0% | |
| ACTTAAGTGGTTTATGCATG+TGG | + | chr3_3:3460493-3460512 | Msa0438690:intron | 35.0% | |
| AGATCTAGAGATCAATGAGA+TGG | + | chr3_3:3460622-3460641 | Msa0438690:intron | 35.0% | |
| CAATGAGATGGAGAAAGATA+TGG | + | chr3_3:3460634-3460653 | Msa0438690:intron | 35.0% | |
| TCATGTAGGGGAATAAGATT+TGG | + | chr3_3:3460688-3460707 | Msa0438690:intron | 35.0% | |
| ! | GATGTTGATGTTGTCTCTTT+TGG | + | chr3_3:3460713-3460732 | Msa0438690:intron | 35.0% |
| ! | TGATGTTGTCTCTTTTGGTA+AGG | + | chr3_3:3460718-3460737 | Msa0438690:intron | 35.0% |
| GCCATGAATTATTTATTGGC+GGG | + | chr3_3:3460985-3461004 | Msa0438690:intron | 35.0% | |
| TCCCGCCAATAAATAATTCA+TGG | - | chr3_3:3460989-3461008 | None:intergenic | 35.0% | |
| TCATAAAATGTCCAAAGCTC+GGG | - | chr3_3:3461079-3461098 | None:intergenic | 35.0% | |
| !! | ATGAACTTTTGTTTAGCGTC+TGG | + | chr3_3:3461095-3461114 | Msa0438690:intron | 35.0% |
| ! | TCACGATTAGGAGTATAAGT+TGG | - | chr3_3:3461259-3461278 | None:intergenic | 35.0% |
| ! | TTTCTTGTGCCACAATCTTT+TGG | + | chr3_3:3461528-3461547 | Msa0438690:intron | 35.0% |
| AATAACATCTGTAGGGTCTT+TGG | - | chr3_3:3461638-3461657 | None:intergenic | 35.0% | |
| CTTTGCGAATAACATCTGTA+GGG | - | chr3_3:3461645-3461664 | None:intergenic | 35.0% | |
| CGATCTCATTTCATACTGTT+CGG | - | chr3_3:3461853-3461872 | None:intergenic | 35.0% | |
| CAGTATGAAATGAGATCGTA+AGG | + | chr3_3:3461855-3461874 | Msa0438690:intron | 35.0% | |
| GTGGAGAACAAAATTGAACT+TGG | + | chr3_3:3461956-3461975 | Msa0438690:intron | 35.0% | |
| GGAGAACAAAATTGAACTTG+GGG | + | chr3_3:3461958-3461977 | Msa0438690:intron | 35.0% | |
| AACAAAATTGAACTTGGGGT+AGG | + | chr3_3:3461962-3461981 | Msa0438690:intron | 35.0% | |
| ! | GTTGTTATAATGCTACTTGC+AGG | - | chr3_3:3462013-3462032 | None:intergenic | 35.0% |
| AATTGTAATTTGGCCCCAAA+TGG | - | chr3_3:3462168-3462187 | None:intergenic | 35.0% | |
| AACTATTCATCCTATGTTGC+TGG | + | chr3_3:3462298-3462317 | Msa0438690:intron | 35.0% | |
| !! | TCTCTTGACTCGTTTTTCTA+TGG | + | chr3_3:3462327-3462346 | Msa0438690:intron | 35.0% |
| AAGTTCAACAGAGTCATTAG+AGG | - | chr3_3:3462369-3462388 | None:intergenic | 35.0% | |
| GCCCAATTTACAGTTTAGAA+TGG | - | chr3_3:3462403-3462422 | None:intergenic | 35.0% | |
| TTGATGTGGAATGATGAAAG+TGG | - | chr3_3:3462436-3462455 | None:intergenic | 35.0% | |
| ! | AGGCCAAGTGAAAGTTTTTA+GGG | + | chr3_3:3462613-3462632 | Msa0438690:intron | 35.0% |
| TCTCCCTAAAAACTTTCACT+TGG | - | chr3_3:3462619-3462638 | None:intergenic | 35.0% | |
| ! | TATGAAAGAAAGAAGGGCAT+TGG | + | chr3_3:3462901-3462920 | Msa0438690:intron | 35.0% |
| !! | ATGAAAGAAAGAAGGGCATT+GGG | + | chr3_3:3462902-3462921 | Msa0438690:intron | 35.0% |
| ATTGCTAATGTATGTAGGAC+AGG | + | chr3_3:3463144-3463163 | Msa0438690:intron | 35.0% | |
| TTGCTAATGTATGTAGGACA+GGG | + | chr3_3:3463145-3463164 | Msa0438690:intron | 35.0% | |
| AATGATTCGAGCACAGAAAA+AGG | + | chr3_3:3463283-3463302 | Msa0438690:CDS | 35.0% | |
| !! | CTACCATTTTGGCATTCTAA+AGG | + | chr3_3:3463595-3463614 | Msa0438690:three_prime_UTR | 35.0% |
| !! | GTACCTTTAGAATGCCAAAA+TGG | - | chr3_3:3463601-3463620 | None:intergenic | 35.0% |
| ! | TGGCATTCTAAAGGTACATT+TGG | + | chr3_3:3463604-3463623 | Msa0438690:three_prime_UTR | 35.0% |
| AATCCTTACCTTGAGGTTGA+AGG | - | chr3_3:3459806-3459825 | None:intergenic | 40.0% | |
| GTTCCCATTTCCCAAACATT+TGG | + | chr3_3:3460213-3460232 | Msa0438690:intron | 40.0% | |
| CAGCCAAATGTTTGGGAAAT+GGG | - | chr3_3:3460219-3460238 | None:intergenic | 40.0% | |
| TCAGCCAAATGTTTGGGAAA+TGG | - | chr3_3:3460220-3460239 | None:intergenic | 40.0% | |
| TTCCCAAACATTTGGCTGAT+TGG | + | chr3_3:3460221-3460240 | Msa0438690:intron | 40.0% | |
| AGCCAATCAGCCAAATGTTT+GGG | - | chr3_3:3460226-3460245 | None:intergenic | 40.0% | |
| AAGCCAATCAGCCAAATGTT+TGG | - | chr3_3:3460227-3460246 | None:intergenic | 40.0% | |
| ACGCCATTCAATATAGACAC+AGG | - | chr3_3:3460397-3460416 | None:intergenic | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr3_3:3460538-3460557 | Msa0438690:intron | 40.0% | |
| TGACGTCGTTTGATTCATGT+AGG | + | chr3_3:3460674-3460693 | Msa0438690:intron | 40.0% | |
| GACGTCGTTTGATTCATGTA+GGG | + | chr3_3:3460675-3460694 | Msa0438690:intron | 40.0% | |
| ACGTCGTTTGATTCATGTAG+GGG | + | chr3_3:3460676-3460695 | Msa0438690:intron | 40.0% | |
| GATTCATATGTTCCTCATGC+AGG | + | chr3_3:3461180-3461199 | Msa0438690:intron | 40.0% | |
| AGCTACTGTAGTTATGGGAA+AGG | + | chr3_3:3461228-3461247 | Msa0438690:CDS | 40.0% | |
| TATACTCCTAATCGTGACGA+TGG | + | chr3_3:3461262-3461281 | Msa0438690:CDS | 40.0% | |
| ATATCTCCATCGTCACGATT+AGG | - | chr3_3:3461271-3461290 | None:intergenic | 40.0% | |
| GACATAAAGTAGTGGCATGT+AGG | + | chr3_3:3461569-3461588 | Msa0438690:intron | 40.0% | |
| TCAGAGTTCTTTGCTTAAGG+TGG | - | chr3_3:3461603-3461622 | None:intergenic | 40.0% | |
| CCTTCAGAGTTCTTTGCTTA+AGG | - | chr3_3:3461606-3461625 | None:intergenic | 40.0% | |
| CCTTAAGCAAAGAACTCTGA+AGG | + | chr3_3:3461603-3461622 | Msa0438690:intron | 40.0% | |
| ! | AAGAACTCTGAAGGATCAGA+TGG | + | chr3_3:3461612-3461631 | Msa0438690:CDS | 40.0% |
| GCTTTGCGAATAACATCTGT+AGG | - | chr3_3:3461646-3461665 | None:intergenic | 40.0% | |
| AGTCTAAGGAAAGTGACTTG+AGG | + | chr3_3:3461924-3461943 | Msa0438690:intron | 40.0% | |
| GTCTAAGGAAAGTGACTTGA+GGG | + | chr3_3:3461925-3461944 | Msa0438690:intron | 40.0% | |
| !! | TGACTTGAGGGTATCTTTAG+TGG | + | chr3_3:3461937-3461956 | Msa0438690:intron | 40.0% |
| AAATGGTCATGGGCCTTTAT+GGG | - | chr3_3:3462151-3462170 | None:intergenic | 40.0% | |
| ATAAAGGCCCATGACCATTT+GGG | + | chr3_3:3462151-3462170 | Msa0438690:intron | 40.0% | |
| TGTCTCGTAAACGAAATAGC+TGG | - | chr3_3:3462275-3462294 | None:intergenic | 40.0% | |
| GAGATTTACTCCAGCAACAT+AGG | - | chr3_3:3462311-3462330 | None:intergenic | 40.0% | |
| ! | AGTTTAGAATGGATGACAGC+AGG | - | chr3_3:3462392-3462411 | None:intergenic | 40.0% |
| TTCACCACCAAAACTTTCAC+CGG | + | chr3_3:3462494-3462513 | Msa0438690:intron | 40.0% | |
| !! | TTTACCGGTGAAAGTTTTGG+TGG | - | chr3_3:3462501-3462520 | None:intergenic | 40.0% |
| ! | AGGTTTACCGGTGAAAGTTT+TGG | - | chr3_3:3462504-3462523 | None:intergenic | 40.0% |
| ! | GAGGCCAAGTGAAAGTTTTT+AGG | + | chr3_3:3462612-3462631 | Msa0438690:intron | 40.0% |
| CCATTCTACGTCATCACAAA+AGG | - | chr3_3:3462682-3462701 | None:intergenic | 40.0% | |
| !! | CCTTTTGTGATGACGTAGAA+TGG | + | chr3_3:3462679-3462698 | Msa0438690:intron | 40.0% |
| TCCTGTAGCTGGACATTAAT+TGG | - | chr3_3:3462722-3462741 | None:intergenic | 40.0% | |
| TTAATGTCCAGCTACAGGAA+TGG | + | chr3_3:3462723-3462742 | Msa0438690:intron | 40.0% | |
| CAACAAATCATGAAGTTGGC+TGG | - | chr3_3:3462818-3462837 | None:intergenic | 40.0% | |
| !! | TGAAAGAAAGAAGGGCATTG+GGG | + | chr3_3:3462903-3462922 | Msa0438690:intron | 40.0% |
| GCACATGTATGAAAATGACC+TGG | - | chr3_3:3462963-3462982 | None:intergenic | 40.0% | |
| TCATACATGTGCAGAGATGA+AGG | + | chr3_3:3462971-3462990 | Msa0438690:intron | 40.0% | |
| CAGGGAAGATCCTTAATTTC+CGG | - | chr3_3:3463172-3463191 | None:intergenic | 40.0% | |
| ! | TTCGAACCAGACTACCATTT+TGG | + | chr3_3:3463584-3463603 | Msa0438690:three_prime_UTR | 40.0% |
| AGAATGCCAAAATGGTAGTC+TGG | - | chr3_3:3463593-3463612 | None:intergenic | 40.0% | |
| AATCCTTACCTTGAGGTTGA+AGG | - | chr3_3:3459806-3459825 | None:intergenic | 40.0% | |
| GTTCCCATTTCCCAAACATT+TGG | + | chr3_3:3460213-3460232 | Msa0438690:intron | 40.0% | |
| CAGCCAAATGTTTGGGAAAT+GGG | - | chr3_3:3460219-3460238 | None:intergenic | 40.0% | |
| TCAGCCAAATGTTTGGGAAA+TGG | - | chr3_3:3460220-3460239 | None:intergenic | 40.0% | |
| TTCCCAAACATTTGGCTGAT+TGG | + | chr3_3:3460221-3460240 | Msa0438690:intron | 40.0% | |
| AGCCAATCAGCCAAATGTTT+GGG | - | chr3_3:3460226-3460245 | None:intergenic | 40.0% | |
| AAGCCAATCAGCCAAATGTT+TGG | - | chr3_3:3460227-3460246 | None:intergenic | 40.0% | |
| ACGCCATTCAATATAGACAC+AGG | - | chr3_3:3460397-3460416 | None:intergenic | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr3_3:3460538-3460557 | Msa0438690:intron | 40.0% | |
| TGACGTCGTTTGATTCATGT+AGG | + | chr3_3:3460674-3460693 | Msa0438690:intron | 40.0% | |
| GACGTCGTTTGATTCATGTA+GGG | + | chr3_3:3460675-3460694 | Msa0438690:intron | 40.0% | |
| ACGTCGTTTGATTCATGTAG+GGG | + | chr3_3:3460676-3460695 | Msa0438690:intron | 40.0% | |
| GATTCATATGTTCCTCATGC+AGG | + | chr3_3:3461180-3461199 | Msa0438690:intron | 40.0% | |
| AGCTACTGTAGTTATGGGAA+AGG | + | chr3_3:3461228-3461247 | Msa0438690:CDS | 40.0% | |
| TATACTCCTAATCGTGACGA+TGG | + | chr3_3:3461262-3461281 | Msa0438690:CDS | 40.0% | |
| ATATCTCCATCGTCACGATT+AGG | - | chr3_3:3461271-3461290 | None:intergenic | 40.0% | |
| GACATAAAGTAGTGGCATGT+AGG | + | chr3_3:3461569-3461588 | Msa0438690:intron | 40.0% | |
| TCAGAGTTCTTTGCTTAAGG+TGG | - | chr3_3:3461603-3461622 | None:intergenic | 40.0% | |
| CCTTCAGAGTTCTTTGCTTA+AGG | - | chr3_3:3461606-3461625 | None:intergenic | 40.0% | |
| CCTTAAGCAAAGAACTCTGA+AGG | + | chr3_3:3461603-3461622 | Msa0438690:intron | 40.0% | |
| ! | AAGAACTCTGAAGGATCAGA+TGG | + | chr3_3:3461612-3461631 | Msa0438690:CDS | 40.0% |
| GCTTTGCGAATAACATCTGT+AGG | - | chr3_3:3461646-3461665 | None:intergenic | 40.0% | |
| AGTCTAAGGAAAGTGACTTG+AGG | + | chr3_3:3461924-3461943 | Msa0438690:intron | 40.0% | |
| GTCTAAGGAAAGTGACTTGA+GGG | + | chr3_3:3461925-3461944 | Msa0438690:intron | 40.0% | |
| !! | TGACTTGAGGGTATCTTTAG+TGG | + | chr3_3:3461937-3461956 | Msa0438690:intron | 40.0% |
| AAATGGTCATGGGCCTTTAT+GGG | - | chr3_3:3462151-3462170 | None:intergenic | 40.0% | |
| ATAAAGGCCCATGACCATTT+GGG | + | chr3_3:3462151-3462170 | Msa0438690:intron | 40.0% | |
| TGTCTCGTAAACGAAATAGC+TGG | - | chr3_3:3462275-3462294 | None:intergenic | 40.0% | |
| GAGATTTACTCCAGCAACAT+AGG | - | chr3_3:3462311-3462330 | None:intergenic | 40.0% | |
| ! | AGTTTAGAATGGATGACAGC+AGG | - | chr3_3:3462392-3462411 | None:intergenic | 40.0% |
| TTCACCACCAAAACTTTCAC+CGG | + | chr3_3:3462494-3462513 | Msa0438690:intron | 40.0% | |
| !! | TTTACCGGTGAAAGTTTTGG+TGG | - | chr3_3:3462501-3462520 | None:intergenic | 40.0% |
| ! | AGGTTTACCGGTGAAAGTTT+TGG | - | chr3_3:3462504-3462523 | None:intergenic | 40.0% |
| ! | GAGGCCAAGTGAAAGTTTTT+AGG | + | chr3_3:3462612-3462631 | Msa0438690:intron | 40.0% |
| CCATTCTACGTCATCACAAA+AGG | - | chr3_3:3462682-3462701 | None:intergenic | 40.0% | |
| !! | CCTTTTGTGATGACGTAGAA+TGG | + | chr3_3:3462679-3462698 | Msa0438690:intron | 40.0% |
| TCCTGTAGCTGGACATTAAT+TGG | - | chr3_3:3462722-3462741 | None:intergenic | 40.0% | |
| TTAATGTCCAGCTACAGGAA+TGG | + | chr3_3:3462723-3462742 | Msa0438690:intron | 40.0% | |
| CAACAAATCATGAAGTTGGC+TGG | - | chr3_3:3462818-3462837 | None:intergenic | 40.0% | |
| !! | TGAAAGAAAGAAGGGCATTG+GGG | + | chr3_3:3462903-3462922 | Msa0438690:intron | 40.0% |
| GCACATGTATGAAAATGACC+TGG | - | chr3_3:3462963-3462982 | None:intergenic | 40.0% | |
| TCATACATGTGCAGAGATGA+AGG | + | chr3_3:3462971-3462990 | Msa0438690:intron | 40.0% | |
| CAGGGAAGATCCTTAATTTC+CGG | - | chr3_3:3463172-3463191 | None:intergenic | 40.0% | |
| ! | TTCGAACCAGACTACCATTT+TGG | + | chr3_3:3463584-3463603 | Msa0438690:three_prime_UTR | 40.0% |
| AGAATGCCAAAATGGTAGTC+TGG | - | chr3_3:3463593-3463612 | None:intergenic | 40.0% | |
| GGTAAACTCCTTCAACCTCA+AGG | + | chr3_3:3459795-3459814 | Msa0438690:CDS | 45.0% | |
| ACTCCTTCAACCTCAAGGTA+AGG | + | chr3_3:3459800-3459819 | Msa0438690:intron | 45.0% | |
| !! | GCATTAATCTTGATGGGCTC+CGG | + | chr3_3:3459995-3460014 | Msa0438690:CDS | 45.0% |
| TCCCAAATCCGACACAGATA+CGG | + | chr3_3:3460313-3460332 | Msa0438690:intron | 45.0% | |
| ACCGTATCTGTGTCGGATTT+GGG | - | chr3_3:3460317-3460336 | None:intergenic | 45.0% | |
| TTGGTAGACCGTATCTGTGT+CGG | - | chr3_3:3460324-3460343 | None:intergenic | 45.0% | |
| GCATGTGGATAGAAGTCATG+TGG | + | chr3_3:3460508-3460527 | Msa0438690:intron | 45.0% | |
| GGATAGAAGTCATGTGGATG+TGG | + | chr3_3:3460514-3460533 | Msa0438690:intron | 45.0% | |
| GTCATGTGGATGTGGTAGTA+AGG | + | chr3_3:3460522-3460541 | Msa0438690:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+AGG | + | chr3_3:3460542-3460561 | Msa0438690:intron | 45.0% | |
| GGAGAGTAGATCAGATGGAA+GGG | + | chr3_3:3460543-3460562 | Msa0438690:intron | 45.0% | |
| GAGGCAAATCACTAGAGGTA+GGG | + | chr3_3:3460565-3460584 | Msa0438690:intron | 45.0% | |
| AGGCAAATCACTAGAGGTAG+GGG | + | chr3_3:3460566-3460585 | Msa0438690:intron | 45.0% | |
| TGTAGAAGATTCCCGAGCTT+TGG | + | chr3_3:3461065-3461084 | Msa0438690:intron | 45.0% | |
| TTTGTTTAGCGTCTGGACTC+TGG | + | chr3_3:3461102-3461121 | Msa0438690:intron | 45.0% | |
| ATGTTCCTCATGCAGGTTCT+CGG | + | chr3_3:3461187-3461206 | Msa0438690:intron | 45.0% | |
| GTGCATTGTGCTTAATGCCA+AGG | + | chr3_3:3461291-3461310 | Msa0438690:CDS | 45.0% | |
| CCAAGGATATTGCTGTGACT+GGG | + | chr3_3:3461308-3461327 | Msa0438690:CDS | 45.0% | |
| TGACAGACAAGGTCTACTAC+TGG | + | chr3_3:3461338-3461357 | Msa0438690:intron | 45.0% | |
| AAGGTCTACTACTGGCATAC+AGG | + | chr3_3:3461346-3461365 | Msa0438690:intron | 45.0% | |
| AGGTCTACTACTGGCATACA+GGG | + | chr3_3:3461347-3461366 | Msa0438690:intron | 45.0% | |
| AGTAGTGGCATGTAGGTATG+TGG | + | chr3_3:3461576-3461595 | Msa0438690:intron | 45.0% | |
| GTAGTGGCATGTAGGTATGT+GGG | + | chr3_3:3461577-3461596 | Msa0438690:intron | 45.0% | |
| CTTATGGTAGGAAGCAGTTC+TGG | - | chr3_3:3461899-3461918 | None:intergenic | 45.0% | |
| CAAATGGTCATGGGCCTTTA+TGG | - | chr3_3:3462152-3462171 | None:intergenic | 45.0% | |
| CATAAAGGCCCATGACCATT+TGG | + | chr3_3:3462150-3462169 | Msa0438690:intron | 45.0% | |
| TAAAGGCCCATGACCATTTG+GGG | + | chr3_3:3462152-3462171 | Msa0438690:intron | 45.0% | |
| ATTTGGCCCCAAATGGTCAT+GGG | - | chr3_3:3462161-3462180 | None:intergenic | 45.0% | |
| AATTTGGCCCCAAATGGTCA+TGG | - | chr3_3:3462162-3462181 | None:intergenic | 45.0% | |
| CGTCATCACAAAAGGCTTGT+GGG | - | chr3_3:3462674-3462693 | None:intergenic | 45.0% | |
| ACGTCATCACAAAAGGCTTG+TGG | - | chr3_3:3462675-3462694 | None:intergenic | 45.0% | |
| GTAGCTGGACATTAATTGGC+AGG | - | chr3_3:3462718-3462737 | None:intergenic | 45.0% | |
| GCCAATTAATGTCCAGCTAC+AGG | + | chr3_3:3462718-3462737 | Msa0438690:intron | 45.0% | |
| ACATGTTCAGCTCATGTTGG+AGG | - | chr3_3:3462757-3462776 | None:intergenic | 45.0% | |
| GTGACATGTTCAGCTCATGT+TGG | - | chr3_3:3462760-3462779 | None:intergenic | 45.0% | |
| AATGTATGTAGGACAGGGAC+CGG | + | chr3_3:3463150-3463169 | Msa0438690:intron | 45.0% | |
| CGGAAATTAAGGATCTTCCC+TGG | + | chr3_3:3463170-3463189 | Msa0438690:CDS | 45.0% | |
| ! | GGCATCACATAAGGTTCTAG+TGG | - | chr3_3:3463221-3463240 | None:intergenic | 45.0% |
| AACCTTATGTGATGCCTCCT+AGG | + | chr3_3:3463225-3463244 | Msa0438690:CDS | 45.0% | |
| GGTAAACTCCTTCAACCTCA+AGG | + | chr3_3:3459795-3459814 | Msa0438690:CDS | 45.0% | |
| ACTCCTTCAACCTCAAGGTA+AGG | + | chr3_3:3459800-3459819 | Msa0438690:intron | 45.0% | |
| !! | GCATTAATCTTGATGGGCTC+CGG | + | chr3_3:3459995-3460014 | Msa0438690:CDS | 45.0% |
| TCCCAAATCCGACACAGATA+CGG | + | chr3_3:3460313-3460332 | Msa0438690:intron | 45.0% | |
| ACCGTATCTGTGTCGGATTT+GGG | - | chr3_3:3460317-3460336 | None:intergenic | 45.0% | |
| TTGGTAGACCGTATCTGTGT+CGG | - | chr3_3:3460324-3460343 | None:intergenic | 45.0% | |
| GCATGTGGATAGAAGTCATG+TGG | + | chr3_3:3460508-3460527 | Msa0438690:intron | 45.0% | |
| GGATAGAAGTCATGTGGATG+TGG | + | chr3_3:3460514-3460533 | Msa0438690:intron | 45.0% | |
| GTCATGTGGATGTGGTAGTA+AGG | + | chr3_3:3460522-3460541 | Msa0438690:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+AGG | + | chr3_3:3460542-3460561 | Msa0438690:intron | 45.0% | |
| GGAGAGTAGATCAGATGGAA+GGG | + | chr3_3:3460543-3460562 | Msa0438690:intron | 45.0% | |
| GAGGCAAATCACTAGAGGTA+GGG | + | chr3_3:3460565-3460584 | Msa0438690:intron | 45.0% | |
| AGGCAAATCACTAGAGGTAG+GGG | + | chr3_3:3460566-3460585 | Msa0438690:intron | 45.0% | |
| TGTAGAAGATTCCCGAGCTT+TGG | + | chr3_3:3461065-3461084 | Msa0438690:intron | 45.0% | |
| TTTGTTTAGCGTCTGGACTC+TGG | + | chr3_3:3461102-3461121 | Msa0438690:intron | 45.0% | |
| ATGTTCCTCATGCAGGTTCT+CGG | + | chr3_3:3461187-3461206 | Msa0438690:intron | 45.0% | |
| GTGCATTGTGCTTAATGCCA+AGG | + | chr3_3:3461291-3461310 | Msa0438690:CDS | 45.0% | |
| CCAAGGATATTGCTGTGACT+GGG | + | chr3_3:3461308-3461327 | Msa0438690:CDS | 45.0% | |
| TGACAGACAAGGTCTACTAC+TGG | + | chr3_3:3461338-3461357 | Msa0438690:intron | 45.0% | |
| AAGGTCTACTACTGGCATAC+AGG | + | chr3_3:3461346-3461365 | Msa0438690:intron | 45.0% | |
| AGGTCTACTACTGGCATACA+GGG | + | chr3_3:3461347-3461366 | Msa0438690:intron | 45.0% | |
| AGTAGTGGCATGTAGGTATG+TGG | + | chr3_3:3461576-3461595 | Msa0438690:intron | 45.0% | |
| GTAGTGGCATGTAGGTATGT+GGG | + | chr3_3:3461577-3461596 | Msa0438690:intron | 45.0% | |
| CTTATGGTAGGAAGCAGTTC+TGG | - | chr3_3:3461899-3461918 | None:intergenic | 45.0% | |
| CAAATGGTCATGGGCCTTTA+TGG | - | chr3_3:3462152-3462171 | None:intergenic | 45.0% | |
| CATAAAGGCCCATGACCATT+TGG | + | chr3_3:3462150-3462169 | Msa0438690:intron | 45.0% | |
| TAAAGGCCCATGACCATTTG+GGG | + | chr3_3:3462152-3462171 | Msa0438690:intron | 45.0% | |
| ATTTGGCCCCAAATGGTCAT+GGG | - | chr3_3:3462161-3462180 | None:intergenic | 45.0% | |
| AATTTGGCCCCAAATGGTCA+TGG | - | chr3_3:3462162-3462181 | None:intergenic | 45.0% | |
| CGTCATCACAAAAGGCTTGT+GGG | - | chr3_3:3462674-3462693 | None:intergenic | 45.0% | |
| ACGTCATCACAAAAGGCTTG+TGG | - | chr3_3:3462675-3462694 | None:intergenic | 45.0% | |
| GTAGCTGGACATTAATTGGC+AGG | - | chr3_3:3462718-3462737 | None:intergenic | 45.0% | |
| GCCAATTAATGTCCAGCTAC+AGG | + | chr3_3:3462718-3462737 | Msa0438690:intron | 45.0% | |
| ACATGTTCAGCTCATGTTGG+AGG | - | chr3_3:3462757-3462776 | None:intergenic | 45.0% | |
| GTGACATGTTCAGCTCATGT+TGG | - | chr3_3:3462760-3462779 | None:intergenic | 45.0% | |
| AATGTATGTAGGACAGGGAC+CGG | + | chr3_3:3463150-3463169 | Msa0438690:intron | 45.0% | |
| CGGAAATTAAGGATCTTCCC+TGG | + | chr3_3:3463170-3463189 | Msa0438690:CDS | 45.0% | |
| ! | GGCATCACATAAGGTTCTAG+TGG | - | chr3_3:3463221-3463240 | None:intergenic | 45.0% |
| AACCTTATGTGATGCCTCCT+AGG | + | chr3_3:3463225-3463244 | Msa0438690:CDS | 45.0% | |
| !! | ATAAAATAAAATAAAATTGA+AGG | - | chr3_3:3459723-3459742 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTTTTGAAT+AGG | + | chr3_3:3459733-3459752 | Msa0438690:intron | 5.0% |
| !!! | TTAAAAATTTGTATTTTTTA+GGG | - | chr3_3:3462088-3462107 | None:intergenic | 5.0% |
| !!! | TTTAAAAATTTGTATTTTTT+AGG | - | chr3_3:3462089-3462108 | None:intergenic | 5.0% |
| !! | ATAAAATAAAATAAAATTGA+AGG | - | chr3_3:3459723-3459742 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTTTTGAAT+AGG | + | chr3_3:3459733-3459752 | Msa0438690:intron | 5.0% |
| !!! | TTAAAAATTTGTATTTTTTA+GGG | - | chr3_3:3462088-3462107 | None:intergenic | 5.0% |
| !!! | TTTAAAAATTTGTATTTTTT+AGG | - | chr3_3:3462089-3462108 | None:intergenic | 5.0% |
| !! | TTAATCTTGATGGGCTCCGG+TGG | + | chr3_3:3459998-3460017 | Msa0438690:CDS | 50.0% |
| CATGGTCACATTCAGTCACC+TGG | - | chr3_3:3460044-3460063 | None:intergenic | 50.0% | |
| GACCGTATCTGTGTCGGATT+TGG | - | chr3_3:3460318-3460337 | None:intergenic | 50.0% | |
| GAGTAGATCAGATGGAAGGG+AGG | + | chr3_3:3460546-3460565 | Msa0438690:intron | 50.0% | |
| GAAGGGAGGCAAATCACTAG+AGG | + | chr3_3:3460560-3460579 | Msa0438690:intron | 50.0% | |
| GGAGGCAAATCACTAGAGGT+AGG | + | chr3_3:3460564-3460583 | Msa0438690:intron | 50.0% | |
| TGTTCCTCATGCAGGTTCTC+GGG | + | chr3_3:3461188-3461207 | Msa0438690:intron | 50.0% | |
| GCCAAGGATATTGCTGTGAC+TGG | + | chr3_3:3461307-3461326 | Msa0438690:CDS | 50.0% | |
| CCCAGTCACAGCAATATCCT+TGG | - | chr3_3:3461311-3461330 | None:intergenic | 50.0% | |
| AGGATATTGCTGTGACTGGG+AGG | + | chr3_3:3461311-3461330 | Msa0438690:CDS | 50.0% | |
| GAACTTGGGGTAGGACCTAA+TGG | + | chr3_3:3461971-3461990 | Msa0438690:intron | 50.0% | |
| CAGCTACAGGAATGGAATCG+CGG | + | chr3_3:3462731-3462750 | Msa0438690:intron | 50.0% | |
| AGGACAGGGACCGGAAATTA+AGG | + | chr3_3:3463159-3463178 | Msa0438690:intron | 50.0% | |
| TCTAGTGGCCGATCACCAAA+GGG | - | chr3_3:3463206-3463225 | None:intergenic | 50.0% | |
| TTCTAGTGGCCGATCACCAA+AGG | - | chr3_3:3463207-3463226 | None:intergenic | 50.0% | |
| !! | GTCCTAGGAGGCATCACATA+AGG | - | chr3_3:3463230-3463249 | None:intergenic | 50.0% |
| ATCTCTCGTACTGTCCTAGG+AGG | - | chr3_3:3463242-3463261 | None:intergenic | 50.0% | |
| CTCATCTCTCGTACTGTCCT+AGG | - | chr3_3:3463245-3463264 | None:intergenic | 50.0% | |
| !! | TTAATCTTGATGGGCTCCGG+TGG | + | chr3_3:3459998-3460017 | Msa0438690:CDS | 50.0% |
| CATGGTCACATTCAGTCACC+TGG | - | chr3_3:3460044-3460063 | None:intergenic | 50.0% | |
| GACCGTATCTGTGTCGGATT+TGG | - | chr3_3:3460318-3460337 | None:intergenic | 50.0% | |
| GAGTAGATCAGATGGAAGGG+AGG | + | chr3_3:3460546-3460565 | Msa0438690:intron | 50.0% | |
| GAAGGGAGGCAAATCACTAG+AGG | + | chr3_3:3460560-3460579 | Msa0438690:intron | 50.0% | |
| GGAGGCAAATCACTAGAGGT+AGG | + | chr3_3:3460564-3460583 | Msa0438690:intron | 50.0% | |
| TGTTCCTCATGCAGGTTCTC+GGG | + | chr3_3:3461188-3461207 | Msa0438690:intron | 50.0% | |
| GCCAAGGATATTGCTGTGAC+TGG | + | chr3_3:3461307-3461326 | Msa0438690:CDS | 50.0% | |
| CCCAGTCACAGCAATATCCT+TGG | - | chr3_3:3461311-3461330 | None:intergenic | 50.0% | |
| AGGATATTGCTGTGACTGGG+AGG | + | chr3_3:3461311-3461330 | Msa0438690:CDS | 50.0% | |
| GAACTTGGGGTAGGACCTAA+TGG | + | chr3_3:3461971-3461990 | Msa0438690:intron | 50.0% | |
| CAGCTACAGGAATGGAATCG+CGG | + | chr3_3:3462731-3462750 | Msa0438690:intron | 50.0% | |
| AGGACAGGGACCGGAAATTA+AGG | + | chr3_3:3463159-3463178 | Msa0438690:intron | 50.0% | |
| TCTAGTGGCCGATCACCAAA+GGG | - | chr3_3:3463206-3463225 | None:intergenic | 50.0% | |
| TTCTAGTGGCCGATCACCAA+AGG | - | chr3_3:3463207-3463226 | None:intergenic | 50.0% | |
| !! | GTCCTAGGAGGCATCACATA+AGG | - | chr3_3:3463230-3463249 | None:intergenic | 50.0% |
| ATCTCTCGTACTGTCCTAGG+AGG | - | chr3_3:3463242-3463261 | None:intergenic | 50.0% | |
| CTCATCTCTCGTACTGTCCT+AGG | - | chr3_3:3463245-3463264 | None:intergenic | 50.0% | |
| ! | TGTTTTCAGAGAGCGGCAGC+TGG | + | chr3_3:3459964-3459983 | Msa0438690:intron | 55.0% |
| !!! | TGGCGGGTTTTCGATGCCAA+GGG | + | chr3_3:3460018-3460037 | Msa0438690:CDS | 55.0% |
| ACATTCAGTCACCTGGCCCT+TGG | - | chr3_3:3460037-3460056 | None:intergenic | 55.0% | |
| TGGGAGGAAGCTGACAGACA+AGG | + | chr3_3:3461327-3461346 | Msa0438690:CDS | 55.0% | |
| CGCGATTCCATTCCTGTAGC+TGG | - | chr3_3:3462733-3462752 | None:intergenic | 55.0% | |
| !! | CAAAGGGGTGCTCACTACCA+GGG | - | chr3_3:3463190-3463209 | None:intergenic | 55.0% |
| ! | GTGAGCACCCCTTTGGTGAT+CGG | + | chr3_3:3463195-3463214 | Msa0438690:CDS | 55.0% |
| CTAGTGGCCGATCACCAAAG+GGG | - | chr3_3:3463205-3463224 | None:intergenic | 55.0% | |
| GAGAGATGAGACCACGAGCA+AGG | + | chr3_3:3463255-3463274 | Msa0438690:CDS | 55.0% | |
| ATCATTGCACGCCTTGCTCG+TGG | - | chr3_3:3463269-3463288 | None:intergenic | 55.0% | |
| TGAGCAGCGACAGAATGCTG+AGG | + | chr3_3:3463328-3463347 | Msa0438690:CDS | 55.0% | |
| ! | TGTTTTCAGAGAGCGGCAGC+TGG | + | chr3_3:3459964-3459983 | Msa0438690:intron | 55.0% |
| !!! | TGGCGGGTTTTCGATGCCAA+GGG | + | chr3_3:3460018-3460037 | Msa0438690:CDS | 55.0% |
| ACATTCAGTCACCTGGCCCT+TGG | - | chr3_3:3460037-3460056 | None:intergenic | 55.0% | |
| TGGGAGGAAGCTGACAGACA+AGG | + | chr3_3:3461327-3461346 | Msa0438690:CDS | 55.0% | |
| CGCGATTCCATTCCTGTAGC+TGG | - | chr3_3:3462733-3462752 | None:intergenic | 55.0% | |
| !! | CAAAGGGGTGCTCACTACCA+GGG | - | chr3_3:3463190-3463209 | None:intergenic | 55.0% |
| ! | GTGAGCACCCCTTTGGTGAT+CGG | + | chr3_3:3463195-3463214 | Msa0438690:CDS | 55.0% |
| CTAGTGGCCGATCACCAAAG+GGG | - | chr3_3:3463205-3463224 | None:intergenic | 55.0% | |
| GAGAGATGAGACCACGAGCA+AGG | + | chr3_3:3463255-3463274 | Msa0438690:CDS | 55.0% | |
| ATCATTGCACGCCTTGCTCG+TGG | - | chr3_3:3463269-3463288 | None:intergenic | 55.0% | |
| TGAGCAGCGACAGAATGCTG+AGG | + | chr3_3:3463328-3463347 | Msa0438690:CDS | 55.0% | |
| !! | ATCTTGATGGGCTCCGGTGG+CGG | + | chr3_3:3460001-3460020 | Msa0438690:CDS | 60.0% |
| ! | TGGCATCGAAAACCCGCCAC+CGG | - | chr3_3:3460017-3460036 | None:intergenic | 60.0% |
| !!! | GTGGCGGGTTTTCGATGCCA+AGG | + | chr3_3:3460017-3460036 | Msa0438690:CDS | 60.0% |
| ! | GGTTTTCGATGCCAAGGGCC+AGG | + | chr3_3:3460023-3460042 | Msa0438690:CDS | 60.0% |
| TCCTCATGCAGGTTCTCGGG+AGG | + | chr3_3:3461191-3461210 | Msa0438690:intron | 60.0% | |
| ACCTCCCGAGAACCTGCATG+AGG | - | chr3_3:3461195-3461214 | None:intergenic | 60.0% | |
| !! | CCAAAGGGGTGCTCACTACC+AGG | - | chr3_3:3463191-3463210 | None:intergenic | 60.0% |
| ! | CCTGGTAGTGAGCACCCCTT+TGG | + | chr3_3:3463188-3463207 | Msa0438690:CDS | 60.0% |
| !! | ATCTTGATGGGCTCCGGTGG+CGG | + | chr3_3:3460001-3460020 | Msa0438690:CDS | 60.0% |
| ! | TGGCATCGAAAACCCGCCAC+CGG | - | chr3_3:3460017-3460036 | None:intergenic | 60.0% |
| !!! | GTGGCGGGTTTTCGATGCCA+AGG | + | chr3_3:3460017-3460036 | Msa0438690:CDS | 60.0% |
| ! | GGTTTTCGATGCCAAGGGCC+AGG | + | chr3_3:3460023-3460042 | Msa0438690:CDS | 60.0% |
| TCCTCATGCAGGTTCTCGGG+AGG | + | chr3_3:3461191-3461210 | Msa0438690:intron | 60.0% | |
| ACCTCCCGAGAACCTGCATG+AGG | - | chr3_3:3461195-3461214 | None:intergenic | 60.0% | |
| !! | CCAAAGGGGTGCTCACTACC+AGG | - | chr3_3:3463191-3463210 | None:intergenic | 60.0% |
| ! | CCTGGTAGTGAGCACCCCTT+TGG | + | chr3_3:3463188-3463207 | Msa0438690:CDS | 60.0% |
| !! | TCTTGATGGGCTCCGGTGGC+GGG | + | chr3_3:3460002-3460021 | Msa0438690:CDS | 65.0% |
| !! | TCTTGATGGGCTCCGGTGGC+GGG | + | chr3_3:3460002-3460021 | Msa0438690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 3459548 | 3463643 | 3459548 | ID=Msa0438690;Name=Msa0438690 |
| chr3_3 | mRNA | 3459548 | 3463643 | 3459548 | ID=Msa0438690-mRNA-1;Parent=Msa0438690;Name=Msa0438690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=112|0.8|0.66|1|0.6|0.66|6|261|187 |
| chr3_3 | exon | 3459548 | 3459627 | 3459548 | ID=Msa0438690-mRNA-1:exon:764;Parent=Msa0438690-mRNA-1 |
| chr3_3 | exon | 3459755 | 3459816 | 3459755 | ID=Msa0438690-mRNA-1:exon:765;Parent=Msa0438690-mRNA-1 |
| chr3_3 | exon | 3459973 | 3460044 | 3459973 | ID=Msa0438690-mRNA-1:exon:766;Parent=Msa0438690-mRNA-1 |
| chr3_3 | exon | 3461202 | 3461348 | 3461202 | ID=Msa0438690-mRNA-1:exon:767;Parent=Msa0438690-mRNA-1 |
| chr3_3 | exon | 3461610 | 3461702 | 3461610 | ID=Msa0438690-mRNA-1:exon:768;Parent=Msa0438690-mRNA-1 |
| chr3_3 | exon | 3463161 | 3463643 | 3463161 | ID=Msa0438690-mRNA-1:exon:769;Parent=Msa0438690-mRNA-1 |
| chr3_3 | five_prime_UTR | 3459548 | 3459627 | 3459548 | ID=Msa0438690-mRNA-1:five_prime_utr;Parent=Msa0438690-mRNA-1 |
| chr3_3 | five_prime_UTR | 3459755 | 3459786 | 3459755 | ID=Msa0438690-mRNA-1:five_prime_utr;Parent=Msa0438690-mRNA-1 |
| chr3_3 | CDS | 3459787 | 3459816 | 3459787 | ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1 |
| chr3_3 | CDS | 3459973 | 3460044 | 3459973 | ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1 |
| chr3_3 | CDS | 3461202 | 3461348 | 3461202 | ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1 |
| chr3_3 | CDS | 3461610 | 3461702 | 3461610 | ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1 |
| chr3_3 | CDS | 3463161 | 3463382 | 3463161 | ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1 |
| chr3_3 | three_prime_UTR | 3463383 | 3463643 | 3463383 | ID=Msa0438690-mRNA-1:three_prime_utr;Parent=Msa0438690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
