AlfalfaGEDB | Msa0438690

M. sativa cultivar zhongmu-4 / Msa0438690

KEGG: K02871
GO: -
PFAM: PF00572.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438690	XP_003601535.2	92.000	200	3	1	1	187	1	200	1.07e-127	367

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438690	sp\|C1A3Z5\|RL13_GEMAT	46.218	119	50	2	25	129	14	132	9.47e-29	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438690	G7J8V5	92.000	200	3	1	1	187	1	200	5.13e-128	367

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0056470	Msa0438690	0.832432	9.486546e-56	-8.615850e-47
Msa0149200	Msa0438690	0.803394	3.560391e-49	-8.615850e-47
Msa0229760	Msa0438690	0.842694	2.211570e-58	-8.615850e-47
Msa0369450	Msa0438690	0.812153	4.891800e-51	-8.615850e-47
Msa0387730	Msa0438690	0.844695	6.446404e-59	-8.615850e-47
Msa0438690	Msa0518390	0.808762	2.641524e-50	-8.615850e-47
Msa0438690	Msa0647500	0.819166	1.339395e-52	-8.615850e-47
Msa0438690	Msa0661300	0.815336	9.739492e-52	-8.615850e-47
Msa0438690	Msa0750880	0.810410	1.168710e-50	-8.615850e-47
Msa0438690	Msa0784200	0.830246	3.272484e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438690	MtrunA17_Chr3g0120801	92.000	200	3	1	1	187	1	200	9.87e-132	367
Msa0438690	MtrunA17_Chr8g0359571	35.043	117	63	1	26	129	104	220	2.81e-16	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0438690	AT3G01790.1	75.281	178	31	1	8	172	14	191	8.78e-96	277
Msa0438690	AT3G01790.2	75.281	178	31	1	8	172	14	191	8.78e-96	277
Msa0438690	AT3G01790.3	73.333	120	19	1	8	114	14	133	1.82e-58	181
Msa0438690	AT1G78630.1	32.800	125	70	2	26	136	105	229	2.08e-14	69.3

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Find 60 sgRNAs with CRISPR-Local

Find 544 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTAAATTTGAGGTACAA+CGG	0.637186	3_3:-3459602	None:intergenic
AACCTTATGTGATGCCTCCT+AGG	0.498050	3_3:+3463225	Msa0438690:CDS
AAGAACTCTGAAGGATCAGA+TGG	0.606577	3_3:+3461612	Msa0438690:CDS
AATAACATCTGTAGGGTCTT+TGG	0.350210	3_3:-3461635	None:intergenic
AATCCTTACCTTGAGGTTGA+AGG	0.443780	3_3:-3459803	None:intergenic
AATGATTCGAGCACAGAAAA+AGG	0.392832	3_3:+3463283	Msa0438690:CDS
AATGTATGTAGGACAGGGAC+CGG	0.545065	3_3:+3463150	Msa0438690:intron
ACATTCAGTCACCTGGCCCT+TGG	0.487414	3_3:-3460034	None:intergenic
AGAAGAAGAAGAAAGGATCT+TGG	0.462326	3_3:+3459575	Msa0438690:five_prime_UTR
AGAATGCCAAAATGGTAGTC+TGG	0.442610	3_3:-3463590	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAAGAAGAAGAAGAA+AGG	+	chr3_3:3459568-3459587	Msa0438690:five_prime_UTR	30.0%
GAAATAGAGTGTAGAAACAT+AGG	-	chr3_3:3459684-3459703	None:intergenic	30.0%
TTTGAAAAATCCTTACCTTG+AGG	-	chr3_3:3459813-3459832	None:intergenic	30.0%
GTACTAGTTAAAGAACAGTA+AGG	+	chr3_3:3460261-3460280	Msa0438690:intron	30.0%
TGATAGAAACTAGACTTAAG+TGG	+	chr3_3:3460480-3460499	Msa0438690:intron	30.0%
AAAGGACAAATGTAAAACAG+TGG	-	chr3_3:3460803-3460822	None:intergenic	30.0%
AATTGGCTATTCCTATTATG+AGG	-	chr3_3:3460842-3460861	None:intergenic	30.0%
GTCTAGATTATGAGTGAAAT+TGG	-	chr3_3:3460859-3460878	None:intergenic	30.0%
AATTAGTTACTTCTCTTGGA+AGG	+	chr3_3:3460958-3460977	Msa0438690:intron	30.0%
AGCCATGAATTATTTATTGG+CGG	+	chr3_3:3460984-3461003	Msa0438690:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	3459548	3463643	3459548	ID=Msa0438690;Name=Msa0438690
chr3_3	mRNA	3459548	3463643	3459548	ID=Msa0438690-mRNA-1;Parent=Msa0438690;Name=Msa0438690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=112\|0.8\|0.66\|1\|0.6\|0.66\|6\|261\|187
chr3_3	exon	3459548	3459627	3459548	ID=Msa0438690-mRNA-1:exon:764;Parent=Msa0438690-mRNA-1
chr3_3	exon	3459755	3459816	3459755	ID=Msa0438690-mRNA-1:exon:765;Parent=Msa0438690-mRNA-1
chr3_3	exon	3459973	3460044	3459973	ID=Msa0438690-mRNA-1:exon:766;Parent=Msa0438690-mRNA-1
chr3_3	exon	3461202	3461348	3461202	ID=Msa0438690-mRNA-1:exon:767;Parent=Msa0438690-mRNA-1
chr3_3	exon	3461610	3461702	3461610	ID=Msa0438690-mRNA-1:exon:768;Parent=Msa0438690-mRNA-1
chr3_3	exon	3463161	3463643	3463161	ID=Msa0438690-mRNA-1:exon:769;Parent=Msa0438690-mRNA-1
chr3_3	five_prime_UTR	3459548	3459627	3459548	ID=Msa0438690-mRNA-1:five_prime_utr;Parent=Msa0438690-mRNA-1
chr3_3	five_prime_UTR	3459755	3459786	3459755	ID=Msa0438690-mRNA-1:five_prime_utr;Parent=Msa0438690-mRNA-1
chr3_3	CDS	3459787	3459816	3459787	ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1
chr3_3	CDS	3459973	3460044	3459973	ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1
chr3_3	CDS	3461202	3461348	3461202	ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1
chr3_3	CDS	3461610	3461702	3461610	ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1
chr3_3	CDS	3463161	3463382	3463161	ID=Msa0438690-mRNA-1:cds;Parent=Msa0438690-mRNA-1
chr3_3	three_prime_UTR	3463383	3463643	3463383	ID=Msa0438690-mRNA-1:three_prime_utr;Parent=Msa0438690-mRNA-1

Gene Sequence

>Msa0438690

ATGAAGATGGTAAACTCCTTCAACCTCAAGAGAGCGGCAGCTGGAATTAAACGCATTAATCTTGATGGGCTCCGGTGGCGGGTTTTCGATGCCAAGGGCCAGGTTCTCGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTATGGGAAAGGATAAGCCAACTTATACTCCTAATCGTGACGATGGAGATATGTGCATTGTGCTTAATGCCAAGGATATTGCTGTGACTGGGAGGAAGCTGACAGACAAGCAAAGAACTCTGAAGGATCAGATGGCCAAAGACCCTACAGATGTTATTCGCAAAGCTATTCTGCGCATGATTCCTAAAAACAACTTACGTGATGACAGGGACCGGAAATTAAGGATCTTCCCTGGTAGTGAGCACCCCTTTGGTGATCGGCCACTAGAACCTTATGTGATGCCTCCTAGGACAGTACGAGAGATGAGACCACGAGCAAGGCGTGCAATGATTCGAGCACAGAAAAAGGCAGAGCAGCAACAAGAGAATGCTGAGCAGCGACAGAATGCTGAGGAAATGAAGAATAGCAAAAAGAGTGAAACATAG

Protein sequence

>Msa0438690

MKMVNSFNLKRAAAGIKRINLDGLRWRVFDAKGQVLGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKQRTLKDQMAKDPTDVIRKAILRMIPKNNLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEEMKNSKKSET*