Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440970 | XP_024633549.1 | 71.667 | 60 | 17 | 0 | 3 | 62 | 81 | 140 | 2.46e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440970 | A0A396IXC3 | 71.667 | 60 | 17 | 0 | 3 | 62 | 81 | 140 | 1.18e-15 | 79.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0180500 | Msa0440970 | 0.810633 | 1.046164e-50 | -8.615850e-47 |
| Msa0440970 | Msa0464680 | 0.805932 | 1.051131e-49 | -8.615850e-47 |
| Msa0440970 | Msa0657580 | 0.801303 | 9.594077e-49 | -8.615850e-47 |
| Msa0440970 | Msa0688480 | 0.807825 | 4.183562e-50 | -8.615850e-47 |
| Msa0440970 | Msa0731940 | 0.816877 | 4.408899e-52 | -8.615850e-47 |
| Msa0440970 | Msa0735170 | 0.810822 | 9.522424e-51 | -8.615850e-47 |
| Msa0440970 | Msa0766630 | 0.802066 | 6.691124e-49 | -8.615850e-47 |
| Msa0440970 | Msa0768290 | 0.802337 | 5.885049e-49 | -8.615850e-47 |
| Msa0440970 | Msa0810220 | 0.811189 | 7.927785e-51 | -8.615850e-47 |
| Msa0440970 | Msa0907950 | 0.820239 | 7.620153e-53 | -8.615850e-47 |
| Msa0440970 | Msa0925250 | 0.800860 | 1.181907e-48 | -8.615850e-47 |
| Msa0440970 | Msa0925290 | 0.808960 | 2.395808e-50 | -8.615850e-47 |
| Msa0440970 | Msa0927380 | 0.816102 | 6.574527e-52 | -8.615850e-47 |
| Msa0440970 | Msa0969520 | 0.800543 | 1.371936e-48 | -8.615850e-47 |
| Msa0440970 | Msa0974080 | 0.803597 | 3.231482e-49 | -8.615850e-47 |
| Msa0440970 | Msa0976670 | 0.800316 | 1.526001e-48 | -8.615850e-47 |
| Msa0440970 | Msa0998690 | 0.822373 | 2.452518e-53 | -8.615850e-47 |
| Msa0440970 | Msa1104090 | 0.806764 | 7.021532e-50 | -8.615850e-47 |
| Msa0440970 | Msa1113170 | 0.803025 | 4.244868e-49 | -8.615850e-47 |
| Msa0440970 | Msa1137570 | 0.815485 | 9.023700e-52 | -8.615850e-47 |
| Msa0440970 | Msa1238930 | 0.803718 | 3.050186e-49 | -8.615850e-47 |
| Msa0440970 | Msa1253020 | 0.801024 | 1.094391e-48 | -8.615850e-47 |
| Msa0440970 | Msa1284680 | 0.803846 | 2.869088e-49 | -8.615850e-47 |
| Msa0440970 | Msa1395900 | 0.813840 | 2.087416e-51 | -8.615850e-47 |
| Msa0440970 | Msa1409870 | 0.804106 | 2.532489e-49 | -8.615850e-47 |
| Msa0440970 | Msa1412530 | 0.800593 | 1.340078e-48 | -8.615850e-47 |
| Msa0283450 | Msa0440970 | 0.802086 | 6.629769e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440970 | MtrunA17_Chr3g0132901 | 71.667 | 60 | 17 | 0 | 3 | 62 | 81 | 140 | 2.26e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTCCATTCTTACTTAT+TGG | 0.111274 | 3_3:-9096273 | None:intergenic |
| CCTCTCCATTCTTACTTATT+GGG | 0.194221 | 3_3:-9096272 | None:intergenic |
| GTCTGAGTTGAAGAAGAAAC+TGG | 0.384229 | 3_3:+9094716 | Msa0440970:CDS |
| TTTCCTATGAGTTGAAAATT+GGG | 0.418572 | 3_3:-9094748 | None:intergenic |
| CTCTCCATTCTTACTTATTG+GGG | 0.431253 | 3_3:-9096271 | None:intergenic |
| AGGATTAGCAATGGGAATAT+AGG | 0.435497 | 3_3:+9096337 | Msa0440970:exon |
| TGTGCTCATGGTGGAATTGA+AGG | 0.459700 | 3_3:+9096317 | Msa0440970:CDS |
| TCAGAGTTTGAAAGCTCAGA+AGG | 0.511020 | 3_3:+9094809 | Msa0440970:CDS |
| GCAGCCCCAATAAGTAAGAA+TGG | 0.517864 | 3_3:+9096267 | Msa0440970:CDS |
| GGAATTGAAGGATTAGCAAT+GGG | 0.537586 | 3_3:+9096329 | Msa0440970:exon |
| AATGGGAATATAGGTGTGGC+GGG | 0.571670 | 3_3:+9096346 | Msa0440970:three_prime_UTR |
| CAATGGGAATATAGGTGTGG+CGG | 0.584546 | 3_3:+9096345 | Msa0440970:three_prime_UTR |
| TGGAATTGAAGGATTAGCAA+TGG | 0.594647 | 3_3:+9096328 | Msa0440970:exon |
| CCCAATAAGTAAGAATGGAG+AGG | 0.620757 | 3_3:+9096272 | Msa0440970:CDS |
| CTAATATTGTCAGATTTACG+AGG | 0.659122 | 3_3:+9096397 | Msa0440970:three_prime_UTR |
| TCTGAGTTGAAGAAGAAACT+GGG | 0.668222 | 3_3:+9094717 | Msa0440970:CDS |
| TAGCAATGGGAATATAGGTG+TGG | 0.669498 | 3_3:+9096342 | Msa0440970:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTTTAAATTTATT+AGG | - | chr3_3:9095737-9095756 | None:intergenic | 0.0% |
| !!! | AATTAATTTTTAAATTTATT+AGG | - | chr3_3:9095737-9095756 | None:intergenic | 0.0% |
| !!! | ATGATTTAGAAATATTTTAT+TGG | + | chr3_3:9096012-9096031 | Msa0440970:intron | 10.0% |
| !!! | ATGATTTAGAAATATTTTAT+TGG | + | chr3_3:9096012-9096031 | Msa0440970:intron | 10.0% |
| !! | AAAAAATACTAAAGAAGAAT+TGG | - | chr3_3:9094892-9094911 | None:intergenic | 15.0% |
| !! | AATAAATAATCAGCTTAAAA+AGG | + | chr3_3:9095215-9095234 | Msa0440970:intron | 15.0% |
| !! | TTTATATCAATACAAAGAAA+GGG | - | chr3_3:9095360-9095379 | None:intergenic | 15.0% |
| !!! | TTTTATATCAATACAAAGAA+AGG | - | chr3_3:9095361-9095380 | None:intergenic | 15.0% |
| !!! | TTTCTTTGTATTGATATAAA+AGG | + | chr3_3:9095360-9095379 | Msa0440970:intron | 15.0% |
| !!! | TTCTTTGTATTGATATAAAA+GGG | + | chr3_3:9095361-9095380 | Msa0440970:intron | 15.0% |
| !!! | TTAGATATTTGTGTATTTTT+TGG | + | chr3_3:9095510-9095529 | Msa0440970:intron | 15.0% |
| !! | AAATAAATCAGAAACAAAAA+TGG | - | chr3_3:9095796-9095815 | None:intergenic | 15.0% |
| !! | ATACAAATGAATTTATGAAA+CGG | - | chr3_3:9095943-9095962 | None:intergenic | 15.0% |
| !! | AAAAAATACTAAAGAAGAAT+TGG | - | chr3_3:9094892-9094911 | None:intergenic | 15.0% |
| !! | AATAAATAATCAGCTTAAAA+AGG | + | chr3_3:9095215-9095234 | Msa0440970:intron | 15.0% |
| !! | TTTATATCAATACAAAGAAA+GGG | - | chr3_3:9095360-9095379 | None:intergenic | 15.0% |
| !!! | TTTTATATCAATACAAAGAA+AGG | - | chr3_3:9095361-9095380 | None:intergenic | 15.0% |
| !!! | TTTCTTTGTATTGATATAAA+AGG | + | chr3_3:9095360-9095379 | Msa0440970:intron | 15.0% |
| !!! | TTCTTTGTATTGATATAAAA+GGG | + | chr3_3:9095361-9095380 | Msa0440970:intron | 15.0% |
| !!! | TTAGATATTTGTGTATTTTT+TGG | + | chr3_3:9095510-9095529 | Msa0440970:intron | 15.0% |
| !! | AAATAAATCAGAAACAAAAA+TGG | - | chr3_3:9095796-9095815 | None:intergenic | 15.0% |
| !! | ATACAAATGAATTTATGAAA+CGG | - | chr3_3:9095943-9095962 | None:intergenic | 15.0% |
| !! | CTATCAGTATATTTATCTTA+TGG | + | chr3_3:9095179-9095198 | Msa0440970:intron | 20.0% |
| !! | TTATATCAATACAAAGAAAG+GGG | - | chr3_3:9095359-9095378 | None:intergenic | 20.0% |
| !! | AATAATGACAAAAAGTAACT+CGG | - | chr3_3:9095897-9095916 | None:intergenic | 20.0% |
| !!! | TTACTTTTTGTCATTATTGT+TGG | + | chr3_3:9095899-9095918 | Msa0440970:intron | 20.0% |
| !! | TACAAATGAATTTATGAAAC+GGG | - | chr3_3:9095942-9095961 | None:intergenic | 20.0% |
| !! | CAAAAAACATAAAGAATTGT+TGG | - | chr3_3:9096061-9096080 | None:intergenic | 20.0% |
| !! | ATTTATCTTATACTTCTAAC+AGG | + | chr3_3:9096242-9096261 | Msa0440970:intron | 20.0% |
| !! | CTATCAGTATATTTATCTTA+TGG | + | chr3_3:9095179-9095198 | Msa0440970:intron | 20.0% |
| !! | TTATATCAATACAAAGAAAG+GGG | - | chr3_3:9095359-9095378 | None:intergenic | 20.0% |
| !! | AATAATGACAAAAAGTAACT+CGG | - | chr3_3:9095897-9095916 | None:intergenic | 20.0% |
| !!! | TTACTTTTTGTCATTATTGT+TGG | + | chr3_3:9095899-9095918 | Msa0440970:intron | 20.0% |
| !! | TACAAATGAATTTATGAAAC+GGG | - | chr3_3:9095942-9095961 | None:intergenic | 20.0% |
| !! | CAAAAAACATAAAGAATTGT+TGG | - | chr3_3:9096061-9096080 | None:intergenic | 20.0% |
| !! | ATTTATCTTATACTTCTAAC+AGG | + | chr3_3:9096242-9096261 | Msa0440970:intron | 20.0% |
| !! | TTTCCTATGAGTTGAAAATT+GGG | - | chr3_3:9094751-9094770 | None:intergenic | 25.0% |
| !!! | TTTTCCTATGAGTTGAAAAT+TGG | - | chr3_3:9094752-9094771 | None:intergenic | 25.0% |
| ! | GTTATTCAATGAATGAAACT+AGG | + | chr3_3:9095042-9095061 | Msa0440970:intron | 25.0% |
| ! | ATTGAGAAAAATCCTTCTAA+AGG | + | chr3_3:9095065-9095084 | Msa0440970:intron | 25.0% |
| ! | ATATATCCCTTTGGTATAAT+TGG | + | chr3_3:9095151-9095170 | Msa0440970:intron | 25.0% |
| ! | AAATAATCAGCTTAAAAAGG+AGG | + | chr3_3:9095218-9095237 | Msa0440970:intron | 25.0% |
| ! | AATAATCAGCTTAAAAAGGA+GGG | + | chr3_3:9095219-9095238 | Msa0440970:intron | 25.0% |
| ! | TTAGTTAGTGTTTCATATTG+TGG | + | chr3_3:9095534-9095553 | Msa0440970:intron | 25.0% |
| !!! | ACCGTCTTTGAAATAAATTT+GGG | - | chr3_3:9095703-9095722 | None:intergenic | 25.0% |
| !!! | TACCGTCTTTGAAATAAATT+TGG | - | chr3_3:9095704-9095723 | None:intergenic | 25.0% |
| ! | ACAAATGAATTTATGAAACG+GGG | - | chr3_3:9095941-9095960 | None:intergenic | 25.0% |
| ! | CACTAATGCATATATGATAA+AGG | + | chr3_3:9096195-9096214 | Msa0440970:intron | 25.0% |
| !! | TTTCCTATGAGTTGAAAATT+GGG | - | chr3_3:9094751-9094770 | None:intergenic | 25.0% |
| !!! | TTTTCCTATGAGTTGAAAAT+TGG | - | chr3_3:9094752-9094771 | None:intergenic | 25.0% |
| ! | GTTATTCAATGAATGAAACT+AGG | + | chr3_3:9095042-9095061 | Msa0440970:intron | 25.0% |
| ! | ATTGAGAAAAATCCTTCTAA+AGG | + | chr3_3:9095065-9095084 | Msa0440970:intron | 25.0% |
| ! | ATATATCCCTTTGGTATAAT+TGG | + | chr3_3:9095151-9095170 | Msa0440970:intron | 25.0% |
| ! | AAATAATCAGCTTAAAAAGG+AGG | + | chr3_3:9095218-9095237 | Msa0440970:intron | 25.0% |
| ! | AATAATCAGCTTAAAAAGGA+GGG | + | chr3_3:9095219-9095238 | Msa0440970:intron | 25.0% |
| ! | TTAGTTAGTGTTTCATATTG+TGG | + | chr3_3:9095534-9095553 | Msa0440970:intron | 25.0% |
| !!! | ACCGTCTTTGAAATAAATTT+GGG | - | chr3_3:9095703-9095722 | None:intergenic | 25.0% |
| !!! | TACCGTCTTTGAAATAAATT+TGG | - | chr3_3:9095704-9095723 | None:intergenic | 25.0% |
| ! | ACAAATGAATTTATGAAACG+GGG | - | chr3_3:9095941-9095960 | None:intergenic | 25.0% |
| ! | CACTAATGCATATATGATAA+AGG | + | chr3_3:9096195-9096214 | Msa0440970:intron | 25.0% |
| !!! | TTTTTTTCTTGTGTTGTTGC+AGG | + | chr3_3:9094692-9094711 | Msa0440970:intron | 30.0% |
| ! | AATCCCAATTTTCAACTCAT+AGG | + | chr3_3:9094745-9094764 | Msa0440970:CDS | 30.0% |
| TGGTAATATTTGAGTCTAGT+TGG | + | chr3_3:9095112-9095131 | Msa0440970:intron | 30.0% | |
| GTATCTAGTATATATCCCTT+TGG | + | chr3_3:9095142-9095161 | Msa0440970:intron | 30.0% | |
| TTTGTATGAGAAGAGATGAA+AGG | - | chr3_3:9095258-9095277 | None:intergenic | 30.0% | |
| AGAAATTAACTAACTCGTAG+TGG | - | chr3_3:9095330-9095349 | None:intergenic | 30.0% | |
| !!! | GATCTGACTTCAATTTTTTG+CGG | + | chr3_3:9095426-9095445 | Msa0440970:intron | 30.0% |
| GTGTTTCATATTGTGGTTAA+TGG | + | chr3_3:9095541-9095560 | Msa0440970:intron | 30.0% | |
| CAAATGTCAGAATGTGTAAT+TGG | - | chr3_3:9095573-9095592 | None:intergenic | 30.0% | |
| !! | CCGTCTTTGAAATAAATTTG+GGG | - | chr3_3:9095702-9095721 | None:intergenic | 30.0% |
| CCCCAAATTTATTTCAAAGA+CGG | + | chr3_3:9095699-9095718 | Msa0440970:intron | 30.0% | |
| AGGAAAATGAAGCAATTCAT+AGG | + | chr3_3:9095850-9095869 | Msa0440970:intron | 30.0% | |
| GGAAAATGAAGCAATTCATA+GGG | + | chr3_3:9095851-9095870 | Msa0440970:intron | 30.0% | |
| TACATTTCACATTGTTGCAT+TGG | + | chr3_3:9096116-9096135 | Msa0440970:intron | 30.0% | |
| TAGGTGAATTTGAAAACAGA+AGG | + | chr3_3:9096147-9096166 | Msa0440970:intron | 30.0% | |
| CTAATATTGTCAGATTTACG+AGG | + | chr3_3:9096397-9096416 | Msa0440970:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTCTTGTGTTGTTGC+AGG | + | chr3_3:9094692-9094711 | Msa0440970:intron | 30.0% |
| ! | AATCCCAATTTTCAACTCAT+AGG | + | chr3_3:9094745-9094764 | Msa0440970:CDS | 30.0% |
| TGGTAATATTTGAGTCTAGT+TGG | + | chr3_3:9095112-9095131 | Msa0440970:intron | 30.0% | |
| GTATCTAGTATATATCCCTT+TGG | + | chr3_3:9095142-9095161 | Msa0440970:intron | 30.0% | |
| TTTGTATGAGAAGAGATGAA+AGG | - | chr3_3:9095258-9095277 | None:intergenic | 30.0% | |
| AGAAATTAACTAACTCGTAG+TGG | - | chr3_3:9095330-9095349 | None:intergenic | 30.0% | |
| !!! | GATCTGACTTCAATTTTTTG+CGG | + | chr3_3:9095426-9095445 | Msa0440970:intron | 30.0% |
| GTGTTTCATATTGTGGTTAA+TGG | + | chr3_3:9095541-9095560 | Msa0440970:intron | 30.0% | |
| CAAATGTCAGAATGTGTAAT+TGG | - | chr3_3:9095573-9095592 | None:intergenic | 30.0% | |
| !! | CCGTCTTTGAAATAAATTTG+GGG | - | chr3_3:9095702-9095721 | None:intergenic | 30.0% |
| CCCCAAATTTATTTCAAAGA+CGG | + | chr3_3:9095699-9095718 | Msa0440970:intron | 30.0% | |
| AGGAAAATGAAGCAATTCAT+AGG | + | chr3_3:9095850-9095869 | Msa0440970:intron | 30.0% | |
| GGAAAATGAAGCAATTCATA+GGG | + | chr3_3:9095851-9095870 | Msa0440970:intron | 30.0% | |
| TACATTTCACATTGTTGCAT+TGG | + | chr3_3:9096116-9096135 | Msa0440970:intron | 30.0% | |
| TAGGTGAATTTGAAAACAGA+AGG | + | chr3_3:9096147-9096166 | Msa0440970:intron | 30.0% | |
| CTAATATTGTCAGATTTACG+AGG | + | chr3_3:9096397-9096416 | Msa0440970:three_prime_UTR | 30.0% | |
| ! | TCTGAGTTGAAGAAGAAACT+GGG | + | chr3_3:9094717-9094736 | Msa0440970:CDS | 35.0% |
| ATGAACTTGTGTCTACGTAT+AGG | + | chr3_3:9094912-9094931 | Msa0440970:intron | 35.0% | |
| ACTTGAAAAAGAAGTTCTGC+AGG | + | chr3_3:9094993-9095012 | Msa0440970:intron | 35.0% | |
| ACAGTGCTCAAGTATCTTAT+TGG | + | chr3_3:9095092-9095111 | Msa0440970:intron | 35.0% | |
| CAATACAAAGAAAGGGGAAA+AGG | - | chr3_3:9095353-9095372 | None:intergenic | 35.0% | |
| GTACACATCAACAACAACAT+AGG | - | chr3_3:9095616-9095635 | None:intergenic | 35.0% | |
| ATTGCCATTGTAACTTAGTG+TGG | + | chr3_3:9095961-9095980 | Msa0440970:intron | 35.0% | |
| CATTGTAACTTAGTGTGGTT+GGG | + | chr3_3:9095966-9095985 | Msa0440970:intron | 35.0% | |
| ATTGTAACTTAGTGTGGTTG+GGG | + | chr3_3:9095967-9095986 | Msa0440970:intron | 35.0% | |
| TCTTCCTTAAAAGTCACAGT+AGG | + | chr3_3:9096089-9096108 | Msa0440970:intron | 35.0% | |
| CTCTCCATTCTTACTTATTG+GGG | - | chr3_3:9096274-9096293 | None:intergenic | 35.0% | |
| CCTCTCCATTCTTACTTATT+GGG | - | chr3_3:9096275-9096294 | None:intergenic | 35.0% | |
| TCCTCTCCATTCTTACTTAT+TGG | - | chr3_3:9096276-9096295 | None:intergenic | 35.0% | |
| ! | TAACAACTGTTTTGTGCTCA+TGG | + | chr3_3:9096305-9096324 | Msa0440970:CDS | 35.0% |
| ! | TGGAATTGAAGGATTAGCAA+TGG | + | chr3_3:9096328-9096347 | Msa0440970:exon | 35.0% |
| ! | GGAATTGAAGGATTAGCAAT+GGG | + | chr3_3:9096329-9096348 | Msa0440970:exon | 35.0% |
| ! | AGGATTAGCAATGGGAATAT+AGG | + | chr3_3:9096337-9096356 | Msa0440970:exon | 35.0% |
| ! | TCTGAGTTGAAGAAGAAACT+GGG | + | chr3_3:9094717-9094736 | Msa0440970:CDS | 35.0% |
| ATGAACTTGTGTCTACGTAT+AGG | + | chr3_3:9094912-9094931 | Msa0440970:intron | 35.0% | |
| ACTTGAAAAAGAAGTTCTGC+AGG | + | chr3_3:9094993-9095012 | Msa0440970:intron | 35.0% | |
| ACAGTGCTCAAGTATCTTAT+TGG | + | chr3_3:9095092-9095111 | Msa0440970:intron | 35.0% | |
| CAATACAAAGAAAGGGGAAA+AGG | - | chr3_3:9095353-9095372 | None:intergenic | 35.0% | |
| GTACACATCAACAACAACAT+AGG | - | chr3_3:9095616-9095635 | None:intergenic | 35.0% | |
| ATTGCCATTGTAACTTAGTG+TGG | + | chr3_3:9095961-9095980 | Msa0440970:intron | 35.0% | |
| CATTGTAACTTAGTGTGGTT+GGG | + | chr3_3:9095966-9095985 | Msa0440970:intron | 35.0% | |
| ATTGTAACTTAGTGTGGTTG+GGG | + | chr3_3:9095967-9095986 | Msa0440970:intron | 35.0% | |
| TCTTCCTTAAAAGTCACAGT+AGG | + | chr3_3:9096089-9096108 | Msa0440970:intron | 35.0% | |
| CTCTCCATTCTTACTTATTG+GGG | - | chr3_3:9096274-9096293 | None:intergenic | 35.0% | |
| CCTCTCCATTCTTACTTATT+GGG | - | chr3_3:9096275-9096294 | None:intergenic | 35.0% | |
| TCCTCTCCATTCTTACTTAT+TGG | - | chr3_3:9096276-9096295 | None:intergenic | 35.0% | |
| ! | TAACAACTGTTTTGTGCTCA+TGG | + | chr3_3:9096305-9096324 | Msa0440970:CDS | 35.0% |
| ! | TGGAATTGAAGGATTAGCAA+TGG | + | chr3_3:9096328-9096347 | Msa0440970:exon | 35.0% |
| ! | GGAATTGAAGGATTAGCAAT+GGG | + | chr3_3:9096329-9096348 | Msa0440970:exon | 35.0% |
| ! | AGGATTAGCAATGGGAATAT+AGG | + | chr3_3:9096337-9096356 | Msa0440970:exon | 35.0% |
| ! | GTCTGAGTTGAAGAAGAAAC+TGG | + | chr3_3:9094716-9094735 | Msa0440970:CDS | 40.0% |
| TCAGAGTTTGAAAGCTCAGA+AGG | + | chr3_3:9094809-9094828 | Msa0440970:CDS | 40.0% | |
| TGTGCGATTCAGATTATGCA+AGG | + | chr3_3:9094966-9094985 | Msa0440970:intron | 40.0% | |
| AGCACTGTTACACCTTTAGA+AGG | - | chr3_3:9095080-9095099 | None:intergenic | 40.0% | |
| GCAGCACCAATTATACCAAA+GGG | - | chr3_3:9095160-9095179 | None:intergenic | 40.0% | |
| AGCAGCACCAATTATACCAA+AGG | - | chr3_3:9095161-9095180 | None:intergenic | 40.0% | |
| GAGAAGAGATGAAAGGAGAT+CGG | - | chr3_3:9095251-9095270 | None:intergenic | 40.0% | |
| ATAGCTCAGTTTGAACTGTG+AGG | + | chr3_3:9095404-9095423 | Msa0440970:intron | 40.0% | |
| ! | TCATTTTCCTCTCAAAGTGG+TGG | - | chr3_3:9095840-9095859 | None:intergenic | 40.0% |
| ! | GCTTCATTTTCCTCTCAAAG+TGG | - | chr3_3:9095843-9095862 | None:intergenic | 40.0% |
| TATGAAACGGGGAGAACAAA+GGG | - | chr3_3:9095930-9095949 | None:intergenic | 40.0% | |
| TTATGAAACGGGGAGAACAA+AGG | - | chr3_3:9095931-9095950 | None:intergenic | 40.0% | |
| CCAACCACACTAAGTTACAA+TGG | - | chr3_3:9095968-9095987 | None:intergenic | 40.0% | |
| CCATTGTAACTTAGTGTGGT+TGG | + | chr3_3:9095965-9095984 | Msa0440970:intron | 40.0% | |
| ! | GTCTCCTACTGTGACTTTTA+AGG | - | chr3_3:9096096-9096115 | None:intergenic | 40.0% |
| CCCAATAAGTAAGAATGGAG+AGG | + | chr3_3:9096272-9096291 | Msa0440970:CDS | 40.0% | |
| TAGCAATGGGAATATAGGTG+TGG | + | chr3_3:9096342-9096361 | Msa0440970:exon | 40.0% | |
| ! | GTCTGAGTTGAAGAAGAAAC+TGG | + | chr3_3:9094716-9094735 | Msa0440970:CDS | 40.0% |
| TCAGAGTTTGAAAGCTCAGA+AGG | + | chr3_3:9094809-9094828 | Msa0440970:CDS | 40.0% | |
| TGTGCGATTCAGATTATGCA+AGG | + | chr3_3:9094966-9094985 | Msa0440970:intron | 40.0% | |
| AGCACTGTTACACCTTTAGA+AGG | - | chr3_3:9095080-9095099 | None:intergenic | 40.0% | |
| GCAGCACCAATTATACCAAA+GGG | - | chr3_3:9095160-9095179 | None:intergenic | 40.0% | |
| AGCAGCACCAATTATACCAA+AGG | - | chr3_3:9095161-9095180 | None:intergenic | 40.0% | |
| GAGAAGAGATGAAAGGAGAT+CGG | - | chr3_3:9095251-9095270 | None:intergenic | 40.0% | |
| ATAGCTCAGTTTGAACTGTG+AGG | + | chr3_3:9095404-9095423 | Msa0440970:intron | 40.0% | |
| ! | TCATTTTCCTCTCAAAGTGG+TGG | - | chr3_3:9095840-9095859 | None:intergenic | 40.0% |
| ! | GCTTCATTTTCCTCTCAAAG+TGG | - | chr3_3:9095843-9095862 | None:intergenic | 40.0% |
| TATGAAACGGGGAGAACAAA+GGG | - | chr3_3:9095930-9095949 | None:intergenic | 40.0% | |
| TTATGAAACGGGGAGAACAA+AGG | - | chr3_3:9095931-9095950 | None:intergenic | 40.0% | |
| CCAACCACACTAAGTTACAA+TGG | - | chr3_3:9095968-9095987 | None:intergenic | 40.0% | |
| CCATTGTAACTTAGTGTGGT+TGG | + | chr3_3:9095965-9095984 | Msa0440970:intron | 40.0% | |
| ! | GTCTCCTACTGTGACTTTTA+AGG | - | chr3_3:9096096-9096115 | None:intergenic | 40.0% |
| CCCAATAAGTAAGAATGGAG+AGG | + | chr3_3:9096272-9096291 | Msa0440970:CDS | 40.0% | |
| TAGCAATGGGAATATAGGTG+TGG | + | chr3_3:9096342-9096361 | Msa0440970:exon | 40.0% | |
| CTTCTCATACAAAGCCGATC+TGG | + | chr3_3:9095265-9095284 | Msa0440970:intron | 45.0% | |
| TGCGAAAAATGAGGCCAGAT+CGG | - | chr3_3:9095282-9095301 | None:intergenic | 45.0% | |
| TGTCTCGTGTGCGAAAAATG+AGG | - | chr3_3:9095291-9095310 | None:intergenic | 45.0% | |
| TAGATCTCCACCACTTTGAG+AGG | + | chr3_3:9095830-9095849 | Msa0440970:intron | 45.0% | |
| TGTTGCATTGGAGCGTATGT+AGG | + | chr3_3:9096128-9096147 | Msa0440970:intron | 45.0% | |
| GCAGCCCCAATAAGTAAGAA+TGG | + | chr3_3:9096267-9096286 | Msa0440970:CDS | 45.0% | |
| ! | CAACTGTTTTGTGCTCATGG+TGG | + | chr3_3:9096308-9096327 | Msa0440970:CDS | 45.0% |
| ! | TGTGCTCATGGTGGAATTGA+AGG | + | chr3_3:9096317-9096336 | Msa0440970:CDS | 45.0% |
| CAATGGGAATATAGGTGTGG+CGG | + | chr3_3:9096345-9096364 | Msa0440970:three_prime_UTR | 45.0% | |
| AATGGGAATATAGGTGTGGC+GGG | + | chr3_3:9096346-9096365 | Msa0440970:three_prime_UTR | 45.0% | |
| CTTCTCATACAAAGCCGATC+TGG | + | chr3_3:9095265-9095284 | Msa0440970:intron | 45.0% | |
| TGCGAAAAATGAGGCCAGAT+CGG | - | chr3_3:9095282-9095301 | None:intergenic | 45.0% | |
| TGTCTCGTGTGCGAAAAATG+AGG | - | chr3_3:9095291-9095310 | None:intergenic | 45.0% | |
| TAGATCTCCACCACTTTGAG+AGG | + | chr3_3:9095830-9095849 | Msa0440970:intron | 45.0% | |
| TGTTGCATTGGAGCGTATGT+AGG | + | chr3_3:9096128-9096147 | Msa0440970:intron | 45.0% | |
| GCAGCCCCAATAAGTAAGAA+TGG | + | chr3_3:9096267-9096286 | Msa0440970:CDS | 45.0% | |
| ! | CAACTGTTTTGTGCTCATGG+TGG | + | chr3_3:9096308-9096327 | Msa0440970:CDS | 45.0% |
| ! | TGTGCTCATGGTGGAATTGA+AGG | + | chr3_3:9096317-9096336 | Msa0440970:CDS | 45.0% |
| CAATGGGAATATAGGTGTGG+CGG | + | chr3_3:9096345-9096364 | Msa0440970:three_prime_UTR | 45.0% | |
| AATGGGAATATAGGTGTGGC+GGG | + | chr3_3:9096346-9096365 | Msa0440970:three_prime_UTR | 45.0% | |
| CGTAGTGGTTAGATCGACGT+TGG | - | chr3_3:9095315-9095334 | None:intergenic | 50.0% | |
| CGTAGTGGTTAGATCGACGT+TGG | - | chr3_3:9095315-9095334 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 9094683 | 9096423 | 9094683 | ID=Msa0440970;Name=Msa0440970 |
| chr3_3 | mRNA | 9094683 | 9096423 | 9094683 | ID=Msa0440970-mRNA-1;Parent=Msa0440970;Name=Msa0440970-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0.66|0.66|1|1|3|79|67 |
| chr3_3 | exon | 9094683 | 9094688 | 9094683 | ID=Msa0440970-mRNA-1:exon:1849;Parent=Msa0440970-mRNA-1 |
| chr3_3 | exon | 9094714 | 9094830 | 9094714 | ID=Msa0440970-mRNA-1:exon:1850;Parent=Msa0440970-mRNA-1 |
| chr3_3 | exon | 9096264 | 9096423 | 9096264 | ID=Msa0440970-mRNA-1:exon:1851;Parent=Msa0440970-mRNA-1 |
| chr3_3 | CDS | 9094683 | 9094688 | 9094683 | ID=Msa0440970-mRNA-1:cds;Parent=Msa0440970-mRNA-1 |
| chr3_3 | CDS | 9094714 | 9094830 | 9094714 | ID=Msa0440970-mRNA-1:cds;Parent=Msa0440970-mRNA-1 |
| chr3_3 | CDS | 9096264 | 9096344 | 9096264 | ID=Msa0440970-mRNA-1:cds;Parent=Msa0440970-mRNA-1 |
| chr3_3 | three_prime_UTR | 9096345 | 9096423 | 9096345 | ID=Msa0440970-mRNA-1:three_prime_utr;Parent=Msa0440970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
