AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1409870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409870 MtrunA17_Chr2g0298701 93.166 717 32 3 1 710 1 707 0.0 1300
Msa1409870 MtrunA17_Chr1g0207661 47.210 233 115 3 139 371 245 469 4.26e-58 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409870 AT4G29940.1 58.118 425 158 5 136 546 97 515 1.19e-155 471
Msa1409870 AT4G29940.2 58.118 425 158 5 136 546 97 515 1.33e-155 469
Msa1409870 AT3G19510.1 47.177 248 121 3 123 369 158 396 5.17e-61 218
Msa1409870 AT3G19510.2 47.177 248 121 3 123 369 158 396 5.17e-61 218

Find 144 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGCATCACAATCTTTA+AGG 0.134962 tig0023574:-69233 None:intergenic
CCCAAGTGTGGAGGTATTTC+TGG 0.146341 tig0023574:-74177 None:intergenic
AGGGCGTCCTTCACGGATTT+TGG 0.158407 tig0023574:-73507 None:intergenic
GATGGATAGGAAATTGAAAT+TGG 0.159981 tig0023574:-69304 None:intergenic
AAGAACAATGATAGAATAAA+AGG 0.187496 tig0023574:+73269 Msa1409870:CDS
TCCAGCATGTGGTCTTTAAA+TGG 0.227946 tig0023574:+72499 Msa1409870:CDS
ATCCTTGGTTGGCACCTTAT+TGG 0.235926 tig0023574:-70748 None:intergenic
CAAAACCAGCCTTGGTCTTC+AGG 0.247836 tig0023574:-71756 None:intergenic
CCTCCACACTTGGGAGAAAA+TGG 0.255233 tig0023574:+74186 Msa1409870:CDS
CTATCATTGTTCTTATTATT+CGG 0.255964 tig0023574:-73260 None:intergenic
CTGAAATTGAAGAGAAAATA+TGG 0.293844 tig0023574:-69442 None:intergenic
AACCTGCCAAGTACTGTCTA+AGG 0.296673 tig0023574:-71844 None:intergenic
TCAGTCTGTCTTTCTTCCTT+TGG 0.302813 tig0023574:-70662 None:intergenic
TGGCTTTCTTCCTTCCTCTC+TGG 0.343007 tig0023574:-72418 None:intergenic
AGATATTCCTTGTTCTTCTC+TGG 0.348606 tig0023574:-70980 None:intergenic
TGACTGTAAGATAGAAATAT+TGG 0.355208 tig0023574:+71788 Msa1409870:CDS
GGATTATAGTCATCGTCTTC+AGG 0.355847 tig0023574:-72397 None:intergenic
TTTCGAAAGGGCGTCCTTCA+CGG 0.358216 tig0023574:-73514 None:intergenic
AGCTACTGATTCTTCCAATA+AGG 0.369588 tig0023574:+70734 Msa1409870:CDS
AGAATAAAAGGGAATTCTTC+AGG 0.374854 tig0023574:+73281 Msa1409870:CDS
CAGAGTATAATATCATTATC+TGG 0.390452 tig0023574:-71566 None:intergenic
CTTTAAGGTTCTTGTTGTGT+TGG 0.395929 tig0023574:-69218 None:intergenic
GAAGATGAAGATTGGGGTCC+TGG 0.398942 tig0023574:+73161 Msa1409870:CDS
AGATTGAAGCAAAGATTAAC+TGG 0.399258 tig0023574:+75067 Msa1409870:CDS
GGACGCCCTTTCGAAAGAAA+TGG 0.401279 tig0023574:+73521 Msa1409870:CDS
ATGGATAGGAAATTGAAATT+GGG 0.404420 tig0023574:-69303 None:intergenic
TATCCATCATTCAATCGAAA+AGG 0.404944 tig0023574:+69319 Msa1409870:five_prime_UTR
AAGAAGTGTGAAAATGTTAC+TGG 0.405838 tig0023574:+74108 Msa1409870:CDS
ATGTTCCTATAGCTGAGTTA+AGG 0.407231 tig0023574:+75149 Msa1409870:CDS
AAACTTCTCTTAATCATGAT+AGG 0.417638 tig0023574:+70847 Msa1409870:CDS
AGTTCAGTTGGTAGTATTGA+AGG 0.418881 tig0023574:+71368 Msa1409870:CDS
CACATAGATTCTGATGAATC+CGG 0.421682 tig0023574:+72574 Msa1409870:CDS
CCGTGATGCCATTCACCAAC+TGG 0.421979 tig0023574:+71337 Msa1409870:CDS
GAGATGTCTTGATCCTCCTT+TGG 0.422829 tig0023574:+71619 Msa1409870:CDS
AGATTCCCAATGTTGATACT+AGG 0.428050 tig0023574:-69276 None:intergenic
AGTGAGTGAAGATGAAGATT+GGG 0.435286 tig0023574:+73154 Msa1409870:CDS
CCCCTTAGACAGTACTTGGC+AGG 0.439188 tig0023574:+71842 Msa1409870:CDS
ATAGGAACATACATAATAGA+TGG 0.443496 tig0023574:-75136 None:intergenic
GGAGTTCAAAATTGCAGATC+GGG 0.444432 tig0023574:+75088 Msa1409870:CDS
CGATAATGCAGGTTAACAAA+TGG 0.446754 tig0023574:+73722 Msa1409870:intron
ACATGTTCCTTTGTGTTACT+CGG 0.451425 tig0023574:-70591 None:intergenic
TGTTCCTATAGCTGAGTTAA+GGG 0.455270 tig0023574:+75150 Msa1409870:CDS
TAATGAAACTATTGCAAGAA+AGG 0.457497 tig0023574:+74954 Msa1409870:CDS
AGACTCCGAGGCAGCAGAGT+TGG 0.457827 tig0023574:+75006 Msa1409870:CDS
AAGTGAGTGAAGATGAAGAT+TGG 0.458660 tig0023574:+73153 Msa1409870:CDS
AGGCAACAAACGCGCATCTT+GGG 0.460252 tig0023574:+71811 Msa1409870:CDS
GAGGCAACAAACGCGCATCT+TGG 0.466032 tig0023574:+71810 Msa1409870:CDS
AAATTCCAACTCTGCTGCCT+CGG 0.470562 tig0023574:-75011 None:intergenic
CTGGATTCTCTTAGTTCAGT+TGG 0.473153 tig0023574:+71356 Msa1409870:CDS
ATTTCCCCTTAGACAGTACT+TGG 0.477866 tig0023574:+71838 Msa1409870:CDS
AAAGTCTACATAAAACTGAT+AGG 0.478611 tig0023574:+70799 Msa1409870:CDS
GGTAATAATACATTAATGTA+TGG 0.479759 tig0023574:+75235 Msa1409870:three_prime_UTR
TTCCTCCTGAAGACCAAGGC+TGG 0.484945 tig0023574:+71751 Msa1409870:CDS
CAAGTCCCATTTCTTTCGAA+AGG 0.486339 tig0023574:-73527 None:intergenic
TATAGCTGAGTTAAGGGAAA+AGG 0.488966 tig0023574:+75156 Msa1409870:CDS
GAAAATTTATAACTTCAAAC+CGG 0.490601 tig0023574:-75290 None:intergenic
AGAACAATGATAGAATAAAA+GGG 0.492512 tig0023574:+73270 Msa1409870:CDS
GACGCCCTTTCGAAAGAAAT+GGG 0.493793 tig0023574:+73522 Msa1409870:CDS
AGTAATGCAGCATCGCCGTC+AGG 0.494282 tig0023574:-72343 None:intergenic
ACCAGAAATACCTCCACACT+TGG 0.495132 tig0023574:+74176 Msa1409870:CDS
AAGTCCCATTTCTTTCGAAA+GGG 0.495232 tig0023574:-73526 None:intergenic
CTTCTGTGTTGATGCCACCA+TGG 0.498525 tig0023574:-72438 None:intergenic
TACTAAATCAAGAAGAAGAA+TGG 0.501022 tig0023574:+72362 Msa1409870:CDS
GTACAATGAAATGAAGCAAC+CGG 0.503191 tig0023574:+75271 Msa1409870:three_prime_UTR
CTCCAGCGTAAGCATCGATA+AGG 0.509397 tig0023574:-71028 None:intergenic
TTATTTGAAGAATCCTTGGT+TGG 0.511651 tig0023574:-70759 None:intergenic
ATCCATCATTCAATCGAAAA+GGG 0.514565 tig0023574:+69320 Msa1409870:five_prime_UTR
ACGACCACATGCTATTTCCC+CGG 0.515781 tig0023574:-72593 None:intergenic
ATCGATGCTTACGCTGGAGA+AGG 0.517287 tig0023574:+71032 Msa1409870:CDS
GTCACAGTCGAGAGAAGATT+AGG 0.517689 tig0023574:+71258 Msa1409870:intron
TTCTACATCACAACATGTGC+AGG 0.518102 tig0023574:+74032 Msa1409870:CDS
CATGGCACTTAAAATGAGAA+AGG 0.518506 tig0023574:+73762 Msa1409870:CDS
TCCATTTAAAGACCACATGC+TGG 0.518896 tig0023574:-72500 None:intergenic
AAGAGAATCCAGTTGGTGAA+TGG 0.519329 tig0023574:-71345 None:intergenic
GGTCGTTAGAATAATATTCA+AGG 0.522036 tig0023574:-72552 None:intergenic
AGAGAAGATTAGGCCAGAAA+AGG 0.525646 tig0023574:+71268 Msa1409870:CDS
ACGTAAATAGATTAATATGC+GGG 0.526006 tig0023574:+70533 Msa1409870:exon
AAGGAGGATCAAGACATCTC+TGG 0.528780 tig0023574:-71616 None:intergenic
ACATAGATTCTGATGAATCC+GGG 0.537290 tig0023574:+72575 Msa1409870:CDS
ACATACCTAGTATCAACATT+GGG 0.539661 tig0023574:+69271 Msa1409870:five_prime_UTR
AAAGGAACATGTCAAGTTGA+AGG 0.541741 tig0023574:+70602 Msa1409870:CDS
GGTTCTGTCATTGCTACAGA+TGG 0.542741 tig0023574:+71389 Msa1409870:CDS
ACCTGCCAAGTACTGTCTAA+GGG 0.543897 tig0023574:-71843 None:intergenic
AACCTTATCGATGCTTACGC+TGG 0.549016 tig0023574:+71026 Msa1409870:CDS
CACATACCTAGTATCAACAT+TGG 0.553170 tig0023574:+69270 Msa1409870:five_prime_UTR
AATACTTGCAAAACCAGCCT+TGG 0.554312 tig0023574:-71764 None:intergenic
ATGCTTACGCTGGAGAAGGT+TGG 0.555448 tig0023574:+71036 Msa1409870:CDS
TATTCCTTGTTCTTCTCTGG+AGG 0.556906 tig0023574:-70977 None:intergenic
TGGAGTTCAAAATTGCAGAT+CGG 0.560560 tig0023574:+75087 Msa1409870:CDS
GAATGTTCTATGTTAGATGA+AGG 0.561374 tig0023574:+72523 Msa1409870:CDS
GAGAAGAGAAAAGGAGTCTG+AGG 0.568921 tig0023574:+73193 Msa1409870:CDS
TCTTCACTCACTTGTTCACA+AGG 0.570005 tig0023574:-73143 None:intergenic
GAAAATTATGATTCATGTGG+TGG 0.575125 tig0023574:+75353 Msa1409870:three_prime_UTR
AACATCATCACTGACCTCCA+TGG 0.580335 tig0023574:-74927 None:intergenic
TGACTATAATCCAGAGAGGA+AGG 0.581091 tig0023574:+72408 Msa1409870:CDS
GGGAAATAGCATGTGGTCGT+AGG 0.581992 tig0023574:+72596 Msa1409870:CDS
AGGAAAGGTGAGATAGATGT+TGG 0.583618 tig0023574:+70867 Msa1409870:CDS
ACAACATGTGCAGGAAGAAG+AGG 0.585587 tig0023574:+74041 Msa1409870:CDS
AATGGGACTTGATGCTGCAA+AGG 0.589378 tig0023574:+73539 Msa1409870:CDS
AATGATATTATACTCTGTGA+TGG 0.590683 tig0023574:+71572 Msa1409870:CDS
GATAGATGTTGGTGATCAAG+AGG 0.591239 tig0023574:+70878 Msa1409870:CDS
TTTGTTTAGCTTCAAGAAGG+AGG 0.591319 tig0023574:+73970 Msa1409870:intron
CAAGTAGCACAAAACACCAA+AGG 0.591492 tig0023574:+70646 Msa1409870:CDS
TCTCTTAATCATGATAGGAA+AGG 0.591668 tig0023574:+70852 Msa1409870:CDS
CAAGTAGTTCTTCCAGCATG+TGG 0.596343 tig0023574:+72488 Msa1409870:CDS
TTCCAATAAGGTGCCAACCA+AGG 0.598203 tig0023574:+70746 Msa1409870:CDS
CTGTAAGATAGAAATATTGG+AGG 0.603472 tig0023574:+71791 Msa1409870:CDS
CCAGTTGGTGAATGGCATCA+CGG 0.605629 tig0023574:-71337 None:intergenic
AAATCAAAATCTCATAAACT+CGG 0.606698 tig0023574:+70684 Msa1409870:CDS
TACGCTGGAGAAGGTTGGAA+AGG 0.611602 tig0023574:+71041 Msa1409870:CDS
CATGGTGGCATCAACACAGA+AGG 0.612139 tig0023574:+72439 Msa1409870:CDS
GAAGAAGCTGCTATTCCTGA+CGG 0.614571 tig0023574:+72328 Msa1409870:CDS
TATCACTTCTAAGAACTCAA+AGG 0.617285 tig0023574:+74008 Msa1409870:CDS
CGGAGGTTGCACAAATGTGT+CGG 0.617900 tig0023574:+70704 Msa1409870:CDS
CTGAACTAAGAGAATCCAGT+TGG 0.618760 tig0023574:-71352 None:intergenic
CTGTCTTCAGTCTCCAAAGG+AGG 0.618854 tig0023574:-71632 None:intergenic
TCACTGTCTTCAGTCTCCAA+AGG 0.619248 tig0023574:-71635 None:intergenic
CGGATTCATCAGAATCTATG+TGG 0.622262 tig0023574:-72573 None:intergenic
AGGAATTCAACAAAGATACA+AGG 0.629477 tig0023574:+70819 Msa1409870:CDS
CCTGCCAAGTACTGTCTAAG+GGG 0.632462 tig0023574:-71842 None:intergenic
GAGAGGAAGGAAGAAAGCCA+TGG 0.637015 tig0023574:+72421 Msa1409870:CDS
ACTGAGAAGTTAAATAACCA+AGG 0.637280 tig0023574:+70558 Msa1409870:CDS
CTTGGGAGAAAATGGCAACA+AGG 0.637413 tig0023574:+74194 Msa1409870:CDS
TCATGTGAAAACCTAAAACA+AGG 0.637563 tig0023574:-73314 None:intergenic
TCGTCTTCAGGATCATCTGA+CGG 0.640667 tig0023574:-72385 None:intergenic
TACGTAAATAGATTAATATG+CGG 0.644745 tig0023574:+70532 Msa1409870:exon
CCAGAAATACCTCCACACTT+GGG 0.646657 tig0023574:+74177 Msa1409870:CDS
GAGAAGGTTGGAAAGGTCAG+AGG 0.649501 tig0023574:+71048 Msa1409870:CDS
AGGAAGGAAGAAAGCCATGG+TGG 0.650653 tig0023574:+72424 Msa1409870:CDS
GTGAGTGAAGATGAAGATTG+GGG 0.652036 tig0023574:+73155 Msa1409870:CDS
AACCAGCCTTGGTCTTCAGG+AGG 0.652976 tig0023574:-71753 None:intergenic
CATAGATTCTGATGAATCCG+GGG 0.669012 tig0023574:+72576 Msa1409870:CDS
TACAAAACCGAGTAACACAA+AGG 0.669844 tig0023574:+70584 Msa1409870:CDS
GCTTCCTCCAAAATCCGTGA+AGG 0.670380 tig0023574:+73500 Msa1409870:CDS
GCAGTTCCTCCTGAAGACCA+AGG 0.671156 tig0023574:+71747 Msa1409870:intron
TCACTCACTTGTTCACAAGG+TGG 0.675741 tig0023574:-73140 None:intergenic
TGCATTTGAAGGAGACTCCG+AGG 0.681549 tig0023574:+74994 Msa1409870:CDS
TCAAAATCTCATAAACTCGG+AGG 0.684427 tig0023574:+70687 Msa1409870:CDS
ATGGAAAATTATGATTCATG+TGG 0.684751 tig0023574:+75350 Msa1409870:three_prime_UTR
TTATCTTCAGGATTCCATGG+AGG 0.700522 tig0023574:+74913 Msa1409870:intron
GAATCCGGGGAAATAGCATG+TGG 0.711313 tig0023574:+72589 Msa1409870:CDS
AATTCAACAAAGATACAAGG+AGG 0.723347 tig0023574:+70822 Msa1409870:CDS
ACGATGACTATAATCCAGAG+AGG 0.733914 tig0023574:+72404 Msa1409870:CDS
TACGCCTCCAGAGAAGAACA+AGG 0.736747 tig0023574:+70973 Msa1409870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGATTTAAAACAAA+AGG - tig0023574:69574-69593 None:intergenic 10.0%
!! TTTGTAAAAAAAAATTTACA+CGG + tig0023574:72024-72043 Msa1409870:intron 10.0%
!!! GAAAAAACATTTATTATTTT+TGG - tig0023574:72282-72301 None:intergenic 10.0%
!! ATAAATGATCATATAAATAA+AGG + tig0023574:72766-72785 Msa1409870:intron 10.0%
!!! TCTTTGTATGATTTTATATA+TGG + tig0023574:70125-70144 Msa1409870:intron 15.0%
!! CTGTATATAATCATTAAAAA+TGG + tig0023574:70288-70307 Msa1409870:intron 15.0%
!!! TATCTTATTATTTTCTAACA+TGG + tig0023574:70344-70363 Msa1409870:intron 15.0%
!! GTTAGATCATTAAAAATATT+AGG - tig0023574:72135-72154 None:intergenic 15.0%
!!! TTTTATAATTTATCTTGAAG+AGG + tig0023574:72941-72960 Msa1409870:intron 15.0%
!!! TTTAAATATTTGTTTTCAGT+TGG - tig0023574:73407-73426 None:intergenic 15.0%
!! CACTAATAAAAGAAAAAAAA+AGG - tig0023574:73815-73834 None:intergenic 15.0%
!! AATTAAACAATTCTTACAAA+AGG - tig0023574:73839-73858 None:intergenic 15.0%
!!! TAGTTTTAAATCCTATAATA+AGG + tig0023574:73875-73894 Msa1409870:intron 15.0%
!!! TTAATAAATTGTTTTGTTCT+TGG + tig0023574:73917-73936 Msa1409870:intron 15.0%
!!! CTTTTTTTTTTACATTTAAC+AGG - tig0023574:74681-74700 None:intergenic 15.0%
!! ACTAAATAAAAAACAGTTAT+TGG - tig0023574:74780-74799 None:intergenic 15.0%
!! TACGTAAATAGATTAATATG+CGG + tig0023574:70532-70551 Msa1409870:exon 20.0%
!! AAATCAAAATCTCATAAACT+CGG + tig0023574:70684-70703 Msa1409870:CDS 20.0%
!! TAATAACTAACAATTCAAGA+AGG - tig0023574:71172-71191 None:intergenic 20.0%
!!! GTTTTTTCTGTCAAAAATTA+AGG + tig0023574:72294-72313 Msa1409870:intron 20.0%
!! AAAAATTAAGGATGTATTCA+AGG + tig0023574:72306-72325 Msa1409870:intron 20.0%
!!! ATAAAGGTACTATTTAAAAC+AGG + tig0023574:72782-72801 Msa1409870:intron 20.0%
!!! TTTGTTTTATCTGTTGTTAT+AGG - tig0023574:72867-72886 None:intergenic 20.0%
!!! TTATGAAAATAAGTTGAAAC+CGG + tig0023574:72964-72983 Msa1409870:intron 20.0%
!! CTATCATTGTTCTTATTATT+CGG - tig0023574:73263-73282 None:intergenic 20.0%
!! AAGAACAATGATAGAATAAA+AGG + tig0023574:73269-73288 Msa1409870:CDS 20.0%
!! AGAACAATGATAGAATAAAA+GGG + tig0023574:73270-73289 Msa1409870:CDS 20.0%
!! GGTAATAATACATTAATGTA+TGG + tig0023574:75235-75254 Msa1409870:three_prime_UTR 20.0%
!! GAAAATTTATAACTTCAAAC+CGG - tig0023574:75293-75312 None:intergenic 20.0%
!!! CATATTTTCATTTTGTTCTA+TGG + tig0023574:75331-75350 Msa1409870:three_prime_UTR 20.0%
! ATGGATAGGAAATTGAAATT+GGG - tig0023574:69306-69325 None:intergenic 25.0%
! CTGAAATTGAAGAGAAAATA+TGG - tig0023574:69445-69464 None:intergenic 25.0%
!! CATATTTTCTCTTCAATTTC+AGG + tig0023574:69443-69462 Msa1409870:five_prime_UTR 25.0%
!!! TTGTTTTGGATTTTTACTTG+TGG + tig0023574:69507-69526 Msa1409870:intron 25.0%
!!! TGTTTTGGATTTTTACTTGT+GGG + tig0023574:69508-69527 Msa1409870:intron 25.0%
! ATAAAACGAAAACGAATGAA+TGG - tig0023574:70207-70226 None:intergenic 25.0%
!! ATAAGTAGTTCTTTGACTTA+TGG - tig0023574:70372-70391 None:intergenic 25.0%
! TTACTATTATGACTGTATCA+GGG + tig0023574:70505-70524 Msa1409870:intron 25.0%
! ACGTAAATAGATTAATATGC+GGG + tig0023574:70533-70552 Msa1409870:exon 25.0%
!!! TCTTTTATTTGAAGAATCCT+TGG - tig0023574:70766-70785 None:intergenic 25.0%
! AAAGTCTACATAAAACTGAT+AGG + tig0023574:70799-70818 Msa1409870:CDS 25.0%
! AAACTTCTCTTAATCATGAT+AGG + tig0023574:70847-70866 Msa1409870:CDS 25.0%
!! ATCTCATTCTATGGATTAAA+AGG - tig0023574:71141-71160 None:intergenic 25.0%
! AAAAATGTTTCAACACAATG+AGG - tig0023574:71489-71508 None:intergenic 25.0%
! CAGAGTATAATATCATTATC+TGG - tig0023574:71569-71588 None:intergenic 25.0%
! AATGATATTATACTCTGTGA+TGG + tig0023574:71572-71591 Msa1409870:CDS 25.0%
! TGACTGTAAGATAGAAATAT+TGG + tig0023574:71788-71807 Msa1409870:CDS 25.0%
! CTTAAAAGTCATGCAAATAA+TGG - tig0023574:71947-71966 None:intergenic 25.0%
!!! ATTTGCATGACTTTTAAGTT+AGG + tig0023574:71949-71968 Msa1409870:intron 25.0%
! ATCAGTTAATCATAAACTGT+TGG - tig0023574:72004-72023 None:intergenic 25.0%
! GAAGTAAAAATCTGAAGATT+TGG - tig0023574:72101-72120 None:intergenic 25.0%
!! AGATTTTTACTTCCTTCTAT+TGG + tig0023574:72108-72127 Msa1409870:intron 25.0%
! AAAATATTAGGACCAATAGA+AGG - tig0023574:72123-72142 None:intergenic 25.0%
! GAAGTGAAAATCAAAATACT+TGG - tig0023574:72248-72267 None:intergenic 25.0%
!!! ATTATTTTTGGACCAATAGA+AGG - tig0023574:72270-72289 None:intergenic 25.0%
! TACTAAATCAAGAAGAAGAA+TGG + tig0023574:72362-72381 Msa1409870:CDS 25.0%
! TCAAATAAGTTAATCCAAAC+CGG + tig0023574:73063-73082 Msa1409870:intron 25.0%
!!! ATTTAAGTTCCTATCTTTTC+AGG + tig0023574:73097-73116 Msa1409870:intron 25.0%
! TTATCGAACATGTTAATAAC+AGG - tig0023574:73708-73727 None:intergenic 25.0%
!! ACAGTAATTTTTGCAATCTT+CGG - tig0023574:74075-74094 None:intergenic 25.0%
!! CATTTCAATGTTTTATCTTC+AGG + tig0023574:74901-74920 Msa1409870:intron 25.0%
! TAATGAAACTATTGCAAGAA+AGG + tig0023574:74954-74973 Msa1409870:CDS 25.0%
! ATAGGAACATACATAATAGA+TGG - tig0023574:75139-75158 None:intergenic 25.0%
! ATGGAAAATTATGATTCATG+TGG + tig0023574:75350-75369 Msa1409870:three_prime_UTR 25.0%
ACATACCTAGTATCAACATT+GGG + tig0023574:69271-69290 Msa1409870:five_prime_UTR 30.0%
GATGGATAGGAAATTGAAAT+TGG - tig0023574:69307-69326 None:intergenic 30.0%
!!! TTTTCGATTGAATGATGGAT+AGG - tig0023574:69320-69339 None:intergenic 30.0%
TATCCATCATTCAATCGAAA+AGG + tig0023574:69319-69338 Msa1409870:five_prime_UTR 30.0%
ATCCATCATTCAATCGAAAA+GGG + tig0023574:69320-69339 Msa1409870:five_prime_UTR 30.0%
!!! TCAGGTTAGTTTTGTTTCAT+TGG + tig0023574:69461-69480 Msa1409870:intron 30.0%
!! GTTTTGGATTTTTACTTGTG+GGG + tig0023574:69509-69528 Msa1409870:intron 30.0%
ATTCATCATTCATGTGCAAA+AGG - tig0023574:69551-69570 None:intergenic 30.0%
CAATCAATTCAAGCAAATCA+TGG - tig0023574:69768-69787 None:intergenic 30.0%
CTCATATTGTGATGTTTACT+TGG + tig0023574:69792-69811 Msa1409870:intron 30.0%
!!! TACTTGGTGATGTTACATTT+TGG + tig0023574:69808-69827 Msa1409870:intron 30.0%
! ATTTTACGCAGAATTGAGAA+GGG + tig0023574:69962-69981 Msa1409870:intron 30.0%
ACAAAGATGAGAGAGTTAAT+AGG - tig0023574:70112-70131 None:intergenic 30.0%
!! AGGACTTGATGATGTAATTT+CGG + tig0023574:70265-70284 Msa1409870:intron 30.0%
CTTACTATTATGACTGTATC+AGG + tig0023574:70504-70523 Msa1409870:intron 30.0%
ACTGAGAAGTTAAATAACCA+AGG + tig0023574:70558-70577 Msa1409870:CDS 30.0%
TTATTTGAAGAATCCTTGGT+TGG - tig0023574:70762-70781 None:intergenic 30.0%
AGGAATTCAACAAAGATACA+AGG + tig0023574:70819-70838 Msa1409870:CDS 30.0%
AATTCAACAAAGATACAAGG+AGG + tig0023574:70822-70841 Msa1409870:CDS 30.0%
TCTCTTAATCATGATAGGAA+AGG + tig0023574:70852-70871 Msa1409870:CDS 30.0%
ACATTCAAAAACGTAAGAGA+AGG + tig0023574:70904-70923 Msa1409870:CDS 30.0%
CTCATAAAAATAGCGATACA+GGG - tig0023574:71463-71482 None:intergenic 30.0%
TCTCATAAAAATAGCGATAC+AGG - tig0023574:71464-71483 None:intergenic 30.0%
AATTTGCACAGAATATCTAG+AGG - tig0023574:71526-71545 None:intergenic 30.0%
GTTCAATCTTTAATGTGACA+CGG + tig0023574:71686-71705 Msa1409870:intron 30.0%
CTGTAAGATAGAAATATTGG+AGG + tig0023574:71791-71810 Msa1409870:CDS 30.0%
TTTGGTTGTGCATGAAAAAA+GGG - tig0023574:72083-72102 None:intergenic 30.0%
ATTTGGTTGTGCATGAAAAA+AGG - tig0023574:72084-72103 None:intergenic 30.0%
! TGATTTTCACTTCCTTCTAT+TGG + tig0023574:72255-72274 Msa1409870:intron 30.0%
GAATGTTCTATGTTAGATGA+AGG + tig0023574:72523-72542 Msa1409870:CDS 30.0%
GGTCGTTAGAATAATATTCA+AGG - tig0023574:72555-72574 None:intergenic 30.0%
TGAAATCTTTAGCAGTCATA+CGG + tig0023574:72706-72725 Msa1409870:intron 30.0%
AAGTACTTGTGATACTGTTT+GGG - tig0023574:73027-73046 None:intergenic 30.0%
TAAGTACTTGTGATACTGTT+TGG - tig0023574:73028-73047 None:intergenic 30.0%
TAGGAACTTAAATGAAACCT+TGG - tig0023574:73090-73109 None:intergenic 30.0%
CAAACATTTCCTGAAAAGAT+AGG - tig0023574:73109-73128 None:intergenic 30.0%
!! CTATCTTTTCAGGAAATGTT+TGG + tig0023574:73107-73126 Msa1409870:intron 30.0%
!! TTTTCAGGAAATGTTTGGAA+AGG + tig0023574:73112-73131 Msa1409870:intron 30.0%
AGAATAAAAGGGAATTCTTC+AGG + tig0023574:73281-73300 Msa1409870:CDS 30.0%
!!! GCATAAAAAGACCTTGTTTT+AGG + tig0023574:73303-73322 Msa1409870:CDS 30.0%
TCATGTGAAAACCTAAAACA+AGG - tig0023574:73317-73336 None:intergenic 30.0%
GAGATGGATGCAAATTTATA+GGG - tig0023574:73618-73637 None:intergenic 30.0%
!! GAGTTATTTGCATTGCTTTT+TGG + tig0023574:73642-73661 Msa1409870:intron 30.0%
CATGTTAATAACAGGAAGTT+TGG - tig0023574:73700-73719 None:intergenic 30.0%
ATTAACATGTTCGATAATGC+AGG + tig0023574:73711-73730 Msa1409870:intron 30.0%
CAATAAACTTTGACACAAGT+GGG + tig0023574:73946-73965 Msa1409870:intron 30.0%
! TATCACTTCTAAGAACTCAA+AGG + tig0023574:74008-74027 Msa1409870:CDS 30.0%
! CAGTAATTTTTGCAATCTTC+GGG - tig0023574:74074-74093 None:intergenic 30.0%
GAAGATTGCAAAAATTACTG+TGG + tig0023574:74074-74093 Msa1409870:CDS 30.0%
! ACATTTTCACACTTCTTCAA+GGG - tig0023574:74105-74124 None:intergenic 30.0%
! AACATTTTCACACTTCTTCA+AGG - tig0023574:74106-74125 None:intergenic 30.0%
! AAGAAGTGTGAAAATGTTAC+TGG + tig0023574:74108-74127 Msa1409870:CDS 30.0%
!! TGTCGGTTTGACAAAAATAA+AGG + tig0023574:74441-74460 Msa1409870:intron 30.0%
CCACGAAAACTTAAGTTATT+AGG - tig0023574:74868-74887 None:intergenic 30.0%
! CCTAATAACTTAAGTTTTCG+TGG + tig0023574:74865-74884 Msa1409870:intron 30.0%
ATTGCAAGAAAGGAAAAAGA+AGG + tig0023574:74964-74983 Msa1409870:CDS 30.0%
! AAGGTAAGTTTTGCATTTGA+AGG + tig0023574:74983-75002 Msa1409870:CDS 30.0%
AGATTGAAGCAAAGATTAAC+TGG + tig0023574:75067-75086 Msa1409870:CDS 30.0%
! TTAAAACATTTTTGCACAGC+AGG + tig0023574:75213-75232 Msa1409870:three_prime_UTR 30.0%
! TAAAACATTTTTGCACAGCA+GGG + tig0023574:75214-75233 Msa1409870:three_prime_UTR 30.0%
GAAAATTATGATTCATGTGG+TGG + tig0023574:75353-75372 Msa1409870:three_prime_UTR 30.0%
!! CTTTAAGGTTCTTGTTGTGT+TGG - tig0023574:69221-69240 None:intergenic 35.0%
! TCGAAGCATCACAATCTTTA+AGG - tig0023574:69236-69255 None:intergenic 35.0%
CACATACCTAGTATCAACAT+TGG + tig0023574:69270-69289 Msa1409870:five_prime_UTR 35.0%
AGATTCCCAATGTTGATACT+AGG - tig0023574:69279-69298 None:intergenic 35.0%
! AACCCTTTTCGATTGAATGA+TGG - tig0023574:69325-69344 None:intergenic 35.0%
!! TCATTGGTGTTAAGTTCATG+TGG + tig0023574:69477-69496 Msa1409870:intron 35.0%
!! CATTGGTGTTAAGTTCATGT+GGG + tig0023574:69478-69497 Msa1409870:intron 35.0%
! GATTTTACGCAGAATTGAGA+AGG + tig0023574:69961-69980 Msa1409870:intron 35.0%
! TCATGCAATTTTGCCATTGT+TGG + tig0023574:70171-70190 Msa1409870:intron 35.0%
TGGAAAATGCTATCCAACAA+TGG - tig0023574:70187-70206 None:intergenic 35.0%
AAGAACAGACTTAGACTTAC+AGG + tig0023574:70245-70264 Msa1409870:intron 35.0%
TACAATATGTGTTTCTCCGT+TGG + tig0023574:70459-70478 Msa1409870:intron 35.0%
GTCAAGATGAATTCTTCCAA+CGG - tig0023574:70478-70497 None:intergenic 35.0%
TACAAAACCGAGTAACACAA+AGG + tig0023574:70584-70603 Msa1409870:CDS 35.0%
! ACATGTTCCTTTGTGTTACT+CGG - tig0023574:70594-70613 None:intergenic 35.0%
!! AAAGGAACATGTCAAGTTGA+AGG + tig0023574:70602-70621 Msa1409870:CDS 35.0%
!!! TGTGCTACTTGTTTTGAACT+GGG - tig0023574:70637-70656 None:intergenic 35.0%
!!! TTGTGCTACTTGTTTTGAAC+TGG - tig0023574:70638-70657 None:intergenic 35.0%
TCAAAATCTCATAAACTCGG+AGG + tig0023574:70687-70706 Msa1409870:CDS 35.0%
!! AGCTACTGATTCTTCCAATA+AGG + tig0023574:70734-70753 Msa1409870:CDS 35.0%
AGATATTCCTTGTTCTTCTC+TGG - tig0023574:70983-71002 None:intergenic 35.0%
!! AGTTCAGTTGGTAGTATTGA+AGG + tig0023574:71368-71387 Msa1409870:CDS 35.0%
CACATAGATTCTGATGAATC+CGG + tig0023574:72574-72593 Msa1409870:CDS 35.0%
ACATAGATTCTGATGAATCC+GGG + tig0023574:72575-72594 Msa1409870:CDS 35.0%
TAAGTGCCTATTAGCATAAG+CGG + tig0023574:72810-72829 Msa1409870:intron 35.0%
TGATAACCGCTTATGCTAAT+AGG - tig0023574:72819-72838 None:intergenic 35.0%
! AATAAGTTGAAACCGGCTTA+TGG + tig0023574:72971-72990 Msa1409870:intron 35.0%
! ATAAGTTGAAACCGGCTTAT+GGG + tig0023574:72972-72991 Msa1409870:intron 35.0%
ACTTAAATGAAACCTTGGTC+CGG - tig0023574:73085-73104 None:intergenic 35.0%
AAGTGAGTGAAGATGAAGAT+TGG + tig0023574:73153-73172 Msa1409870:CDS 35.0%
AGTGAGTGAAGATGAAGATT+GGG + tig0023574:73154-73173 Msa1409870:CDS 35.0%
AAAAAGACGGAGAAGAGAAA+AGG + tig0023574:73184-73203 Msa1409870:CDS 35.0%
! TTTTCAGTTGGAACTTTGAG+AGG - tig0023574:73395-73414 None:intergenic 35.0%
GCTTCTGGCAAATTTCATAA+TGG - tig0023574:73455-73474 None:intergenic 35.0%
AAGTCCCATTTCTTTCGAAA+GGG - tig0023574:73529-73548 None:intergenic 35.0%
GGAGATGGATGCAAATTTAT+AGG - tig0023574:73619-73638 None:intergenic 35.0%
AAGCAATGCAAATAACTCTG+CGG - tig0023574:73640-73659 None:intergenic 35.0%
CGATAATGCAGGTTAACAAA+TGG + tig0023574:73722-73741 Msa1409870:intron 35.0%
GTTCAAAAATGCACGTTACA+TGG + tig0023574:73744-73763 Msa1409870:CDS 35.0%
CATGGCACTTAAAATGAGAA+AGG + tig0023574:73762-73781 Msa1409870:CDS 35.0%
! ATGATCAGACGCCTTATTAT+AGG - tig0023574:73889-73908 None:intergenic 35.0%
GCAATAAACTTTGACACAAG+TGG + tig0023574:73945-73964 Msa1409870:intron 35.0%
!!! GGTTTTGTTTAGCTTCAAGA+AGG + tig0023574:73967-73986 Msa1409870:intron 35.0%
! TTTGTTTAGCTTCAAGAAGG+AGG + tig0023574:73970-73989 Msa1409870:intron 35.0%
AATGCACGGAATATGACATT+TGG - tig0023574:74235-74254 None:intergenic 35.0%
TTCTCAAGCACAAAAATGCA+CGG - tig0023574:74249-74268 None:intergenic 35.0%
! GTTCATGCAGTTGATATTTG+AGG + tig0023574:74295-74314 Msa1409870:intron 35.0%
! AATTTTACGATACCAGTCCA+TGG - tig0023574:74368-74387 None:intergenic 35.0%
GACTGGTATCGTAAAATTGT+TGG + tig0023574:74370-74389 Msa1409870:intron 35.0%
AGATGTAACATGATCTGTGT+CGG + tig0023574:74424-74443 Msa1409870:intron 35.0%
GACTAGATCATTGTCAAGTT+TGG - tig0023574:74520-74539 None:intergenic 35.0%
GACTGTAACTTCTACTTTCA+AGG + tig0023574:74566-74585 Msa1409870:intron 35.0%
! GTTTTATCTTCAGGATTCCA+TGG + tig0023574:74910-74929 Msa1409870:intron 35.0%
TGGAGTTCAAAATTGCAGAT+CGG + tig0023574:75087-75106 Msa1409870:CDS 35.0%
ATGTTCCTATAGCTGAGTTA+AGG + tig0023574:75149-75168 Msa1409870:CDS 35.0%
TGTTCCTATAGCTGAGTTAA+GGG + tig0023574:75150-75169 Msa1409870:CDS 35.0%
! TTTTCCCTTAACTCAGCTAT+AGG - tig0023574:75157-75176 None:intergenic 35.0%
TATAGCTGAGTTAAGGGAAA+AGG + tig0023574:75156-75175 Msa1409870:CDS 35.0%
GTACAATGAAATGAAGCAAC+CGG + tig0023574:75271-75290 Msa1409870:three_prime_UTR 35.0%
!!! CATGTGGGTTTGTCTTGTTT+TGG + tig0023574:69493-69512 Msa1409870:intron 40.0%
TGTGGGGCTTAATAAAGTCA+AGG + tig0023574:69525-69544 Msa1409870:intron 40.0%
AATCTCGATTGTAACCACCT+TGG - tig0023574:69945-69964 None:intergenic 40.0%
!! TACTCGGTTTTGTAGATCCT+TGG - tig0023574:70578-70597 None:intergenic 40.0%
!!! TGCTACTTGTTTTGAACTGG+GGG - tig0023574:70635-70654 None:intergenic 40.0%
!!! GTGCTACTTGTTTTGAACTG+GGG - tig0023574:70636-70655 None:intergenic 40.0%
CAAGTAGCACAAAACACCAA+AGG + tig0023574:70646-70665 Msa1409870:CDS 40.0%
TCAGTCTGTCTTTCTTCCTT+TGG - tig0023574:70665-70684 None:intergenic 40.0%
AGGAAAGGTGAGATAGATGT+TGG + tig0023574:70867-70886 Msa1409870:CDS 40.0%
!! GATAGATGTTGGTGATCAAG+AGG + tig0023574:70878-70897 Msa1409870:CDS 40.0%
TATTCCTTGTTCTTCTCTGG+AGG - tig0023574:70980-70999 None:intergenic 40.0%
GAAATGCGCATCTCATTCTA+TGG - tig0023574:71150-71169 None:intergenic 40.0%
AGAGAAGATTAGGCCAGAAA+AGG + tig0023574:71268-71287 Msa1409870:CDS 40.0%
!! AAGAGAATCCAGTTGGTGAA+TGG - tig0023574:71348-71367 None:intergenic 40.0%
CTGAACTAAGAGAATCCAGT+TGG - tig0023574:71355-71374 None:intergenic 40.0%
CTGGATTCTCTTAGTTCAGT+TGG + tig0023574:71356-71375 Msa1409870:CDS 40.0%
GCACAGAATATCTAGAGGAT+GGG - tig0023574:71521-71540 None:intergenic 40.0%
TGCACAGAATATCTAGAGGA+TGG - tig0023574:71522-71541 None:intergenic 40.0%
AATACTTGCAAAACCAGCCT+TGG - tig0023574:71767-71786 None:intergenic 40.0%
ATTTCCCCTTAGACAGTACT+TGG + tig0023574:71838-71857 Msa1409870:CDS 40.0%
GATATACACTGACAGTGTAG+AGG - tig0023574:72186-72205 None:intergenic 40.0%
CTTGGTTGTGTAAGAGACAA+GGG - tig0023574:72230-72249 None:intergenic 40.0%
ACTTGGTTGTGTAAGAGACA+AGG - tig0023574:72231-72250 None:intergenic 40.0%
GGATTATAGTCATCGTCTTC+AGG - tig0023574:72400-72419 None:intergenic 40.0%
ACGATGACTATAATCCAGAG+AGG + tig0023574:72404-72423 Msa1409870:CDS 40.0%
TGACTATAATCCAGAGAGGA+AGG + tig0023574:72408-72427 Msa1409870:CDS 40.0%
TCCAGCATGTGGTCTTTAAA+TGG + tig0023574:72499-72518 Msa1409870:CDS 40.0%
TCCATTTAAAGACCACATGC+TGG - tig0023574:72503-72522 None:intergenic 40.0%
CGGATTCATCAGAATCTATG+TGG - tig0023574:72576-72595 None:intergenic 40.0%
CATAGATTCTGATGAATCCG+GGG + tig0023574:72576-72595 Msa1409870:CDS 40.0%
TTATGACATGTCCCATAAGC+CGG - tig0023574:72986-73005 None:intergenic 40.0%
GTGAGTGAAGATGAAGATTG+GGG + tig0023574:73155-73174 Msa1409870:CDS 40.0%
! GTTTTCACATGATGCAGTTG+AGG + tig0023574:73325-73344 Msa1409870:CDS 40.0%
GCTCATTCTCTGCAAAAACT+TGG - tig0023574:73482-73501 None:intergenic 40.0%
CAAGTCCCATTTCTTTCGAA+AGG - tig0023574:73530-73549 None:intergenic 40.0%
! AAATCTGACTCGAGACTCTA+AGG - tig0023574:73570-73589 None:intergenic 40.0%
TTCTACATCACAACATGTGC+AGG + tig0023574:74032-74051 Msa1409870:CDS 40.0%
!!! TCTGGTCGCTTTTTCTTCAA+AGG - tig0023574:74162-74181 None:intergenic 40.0%
! CATGCAGTTGATATTTGAGG+TGG + tig0023574:74298-74317 Msa1409870:intron 40.0%
ATGGTAAACCACCTATCAAG+GGG - tig0023574:74349-74368 None:intergenic 40.0%
CATGGTAAACCACCTATCAA+GGG - tig0023574:74350-74369 None:intergenic 40.0%
TCTCAGACGTTACAGCAAAA+AGG + tig0023574:74544-74563 Msa1409870:intron 40.0%
AACAATTTAGTCCACCTCTC+AGG - tig0023574:74655-74674 None:intergenic 40.0%
CCGAAAGGCTAAACTATTAG+GGG - tig0023574:74715-74734 None:intergenic 40.0%
! CCCCTAATAGTTTAGCCTTT+CGG + tig0023574:74712-74731 Msa1409870:intron 40.0%
CCCGAAAGGCTAAACTATTA+GGG - tig0023574:74716-74735 None:intergenic 40.0%
! CCCTAATAGTTTAGCCTTTC+GGG + tig0023574:74713-74732 Msa1409870:intron 40.0%
TCCCGAAAGGCTAAACTATT+AGG - tig0023574:74717-74736 None:intergenic 40.0%
TTATCTTCAGGATTCCATGG+AGG + tig0023574:74913-74932 Msa1409870:intron 40.0%
GGAGTTCAAAATTGCAGATC+GGG + tig0023574:75088-75107 Msa1409870:CDS 40.0%
!!! GCTACTTGTTTTGAACTGGG+GGG - tig0023574:70634-70653 None:intergenic 45.0%
! TTCCAATAAGGTGCCAACCA+AGG + tig0023574:70746-70765 Msa1409870:CDS 45.0%
ATCCTTGGTTGGCACCTTAT+TGG - tig0023574:70751-70770 None:intergenic 45.0%
AACCTTATCGATGCTTACGC+TGG + tig0023574:71026-71045 Msa1409870:CDS 45.0%
! TTGGAAAGGTCAGAGGTATG+AGG + tig0023574:71055-71074 Msa1409870:intron 45.0%
GTCACAGTCGAGAGAAGATT+AGG + tig0023574:71258-71277 Msa1409870:intron 45.0%
GGTTCTGTCATTGCTACAGA+TGG + tig0023574:71389-71408 Msa1409870:CDS 45.0%
AAGGAGGATCAAGACATCTC+TGG - tig0023574:71619-71638 None:intergenic 45.0%
GAGATGTCTTGATCCTCCTT+TGG + tig0023574:71619-71638 Msa1409870:CDS 45.0%
TCACTGTCTTCAGTCTCCAA+AGG - tig0023574:71638-71657 None:intergenic 45.0%
! ACCTGCCAAGTACTGTCTAA+GGG - tig0023574:71846-71865 None:intergenic 45.0%
! AACCTGCCAAGTACTGTCTA+AGG - tig0023574:71847-71866 None:intergenic 45.0%
GAAGAAGCTGCTATTCCTGA+CGG + tig0023574:72328-72347 Msa1409870:CDS 45.0%
TCGTCTTCAGGATCATCTGA+CGG - tig0023574:72388-72407 None:intergenic 45.0%
CAAGTAGTTCTTCCAGCATG+TGG + tig0023574:72488-72507 Msa1409870:CDS 45.0%
AGTTAATCCAAACCGGACCA+AGG + tig0023574:73070-73089 Msa1409870:intron 45.0%
AATGAAACCTTGGTCCGGTT+TGG - tig0023574:73080-73099 None:intergenic 45.0%
ATTGGGGTCCTGGAAAAAGA+CGG + tig0023574:73171-73190 Msa1409870:CDS 45.0%
! TCTCTTCTCCGTCTTTTTCC+AGG - tig0023574:73182-73201 None:intergenic 45.0%
GAGAAGAGAAAAGGAGTCTG+AGG + tig0023574:73193-73212 Msa1409870:CDS 45.0%
CAAAAACTTGGCGAAGCTTC+TGG - tig0023574:73470-73489 None:intergenic 45.0%
GACGCCCTTTCGAAAGAAAT+GGG + tig0023574:73522-73541 Msa1409870:CDS 45.0%
AATGGGACTTGATGCTGCAA+AGG + tig0023574:73539-73558 Msa1409870:CDS 45.0%
TGCAAATAACTCTGCGGAGA+TGG - tig0023574:73634-73653 None:intergenic 45.0%
ACAACATGTGCAGGAAGAAG+AGG + tig0023574:74041-74060 Msa1409870:CDS 45.0%
ACCAGAAATACCTCCACACT+TGG + tig0023574:74176-74195 Msa1409870:CDS 45.0%
CCAGAAATACCTCCACACTT+GGG + tig0023574:74177-74196 Msa1409870:CDS 45.0%
!!! TTGCCATTTTCTCCCAAGTG+TGG - tig0023574:74192-74211 None:intergenic 45.0%
CTTGGGAGAAAATGGCAACA+AGG + tig0023574:74194-74213 Msa1409870:CDS 45.0%
TGGTAAACCACCTATCAAGG+GGG - tig0023574:74348-74367 None:intergenic 45.0%
CCATGGTAAACCACCTATCA+AGG - tig0023574:74351-74370 None:intergenic 45.0%
CCTTGATAGGTGGTTTACCA+TGG + tig0023574:74348-74367 Msa1409870:intron 45.0%
ATAGGTGGTTTACCATGGAC+TGG + tig0023574:74353-74372 Msa1409870:intron 45.0%
TCTCAGCAGTGAAGAAAACG+AGG - tig0023574:74407-74426 None:intergenic 45.0%
ATGTCACGAATCATCCCGAA+AGG - tig0023574:74730-74749 None:intergenic 45.0%
TTTCGGGATGATTCGTGACA+TGG + tig0023574:74729-74748 Msa1409870:intron 45.0%
AACATCATCACTGACCTCCA+TGG - tig0023574:74930-74949 None:intergenic 45.0%
AAATTCCAACTCTGCTGCCT+CGG - tig0023574:75014-75033 None:intergenic 45.0%
CACGTGACTCAGAACACGTA+CGG - tig0023574:69710-69729 None:intergenic 50.0%
CGGAGGTTGCACAAATGTGT+CGG + tig0023574:70704-70723 Msa1409870:CDS 50.0%
TACGCCTCCAGAGAAGAACA+AGG + tig0023574:70973-70992 Msa1409870:CDS 50.0%
!! CTCCAGCGTAAGCATCGATA+AGG - tig0023574:71031-71050 None:intergenic 50.0%
ATCGATGCTTACGCTGGAGA+AGG + tig0023574:71032-71051 Msa1409870:CDS 50.0%
ATGCTTACGCTGGAGAAGGT+TGG + tig0023574:71036-71055 Msa1409870:CDS 50.0%
TACGCTGGAGAAGGTTGGAA+AGG + tig0023574:71041-71060 Msa1409870:CDS 50.0%
GAGAAGGTTGGAAAGGTCAG+AGG + tig0023574:71048-71067 Msa1409870:CDS 50.0%
!! CCAGTTGGTGAATGGCATCA+CGG - tig0023574:71340-71359 None:intergenic 50.0%
CTGTCTTCAGTCTCCAAAGG+AGG - tig0023574:71635-71654 None:intergenic 50.0%
! CAAAACCAGCCTTGGTCTTC+AGG - tig0023574:71759-71778 None:intergenic 50.0%
AGGCAACAAACGCGCATCTT+GGG + tig0023574:71811-71830 Msa1409870:CDS 50.0%
! CCTGCCAAGTACTGTCTAAG+GGG - tig0023574:71845-71864 None:intergenic 50.0%
TGGCTTTCTTCCTTCCTCTC+TGG - tig0023574:72421-72440 None:intergenic 50.0%
GAGAGGAAGGAAGAAAGCCA+TGG + tig0023574:72421-72440 Msa1409870:CDS 50.0%
AGGAAGGAAGAAAGCCATGG+TGG + tig0023574:72424-72443 Msa1409870:CDS 50.0%
! CTTCTGTGTTGATGCCACCA+TGG - tig0023574:72441-72460 None:intergenic 50.0%
CATGGTGGCATCAACACAGA+AGG + tig0023574:72439-72458 Msa1409870:CDS 50.0%
GAATCCGGGGAAATAGCATG+TGG + tig0023574:72589-72608 Msa1409870:CDS 50.0%
!! ACGACCACATGCTATTTCCC+CGG - tig0023574:72596-72615 None:intergenic 50.0%
GGGAAATAGCATGTGGTCGT+AGG + tig0023574:72596-72615 Msa1409870:CDS 50.0%
GAAGATGAAGATTGGGGTCC+TGG + tig0023574:73161-73180 Msa1409870:CDS 50.0%
GCTTCCTCCAAAATCCGTGA+AGG + tig0023574:73500-73519 Msa1409870:CDS 50.0%
!! TTTCGAAAGGGCGTCCTTCA+CGG - tig0023574:73517-73536 None:intergenic 50.0%
GGACGCCCTTTCGAAAGAAA+TGG + tig0023574:73521-73540 Msa1409870:CDS 50.0%
!! CCCAAGTGTGGAGGTATTTC+TGG - tig0023574:74180-74199 None:intergenic 50.0%
! CCATTTTCTCCCAAGTGTGG+AGG - tig0023574:74189-74208 None:intergenic 50.0%
CCTCCACACTTGGGAGAAAA+TGG + tig0023574:74186-74205 Msa1409870:CDS 50.0%
AGAAGATCTACCGTGGAGTG+TGG + tig0023574:74321-74340 Msa1409870:intron 50.0%
CTCTCAGGCAAGTTCTACAG+TGG - tig0023574:74640-74659 None:intergenic 50.0%
CACTGTAGAACTTGCCTGAG+AGG + tig0023574:74638-74657 Msa1409870:intron 50.0%
TGTAGAACTTGCCTGAGAGG+TGG + tig0023574:74641-74660 Msa1409870:intron 50.0%
TGCATTTGAAGGAGACTCCG+AGG + tig0023574:74994-75013 Msa1409870:CDS 50.0%
GTCATCGTCACTCATCGCCA+AGG + tig0023574:69925-69944 Msa1409870:intron 55.0%
ATCGTCACTCATCGCCAAGG+TGG + tig0023574:69928-69947 Msa1409870:intron 55.0%
! GCTCGTTGCAGCTCCTTTTC+TGG - tig0023574:71284-71303 None:intergenic 55.0%
CCGTGATGCCATTCACCAAC+TGG + tig0023574:71337-71356 Msa1409870:CDS 55.0%
GCAGTTCCTCCTGAAGACCA+AGG + tig0023574:71747-71766 Msa1409870:intron 55.0%
TTCCTCCTGAAGACCAAGGC+TGG + tig0023574:71751-71770 Msa1409870:CDS 55.0%
! AACCAGCCTTGGTCTTCAGG+AGG - tig0023574:71756-71775 None:intergenic 55.0%
GAGGCAACAAACGCGCATCT+TGG + tig0023574:71810-71829 Msa1409870:CDS 55.0%
CCCCTTAGACAGTACTTGGC+AGG + tig0023574:71842-71861 Msa1409870:CDS 55.0%
AGTAATGCAGCATCGCCGTC+AGG - tig0023574:72346-72365 None:intergenic 55.0%
! GCGTCCTTCACGGATTTTGG+AGG - tig0023574:73507-73526 None:intergenic 55.0%
!! AGGGCGTCCTTCACGGATTT+TGG - tig0023574:73510-73529 None:intergenic 55.0%
GAGGTGGAGAAGATCTACCG+TGG + tig0023574:74314-74333 Msa1409870:intron 55.0%
TCAAGGGGGTCCACACTCCA+CGG - tig0023574:74334-74353 None:intergenic 60.0%
GGAGTGTGGACCCCCTTGAT+AGG + tig0023574:74335-74354 Msa1409870:intron 60.0%
GTGTGGACCCCCTTGATAGG+TGG + tig0023574:74338-74357 Msa1409870:intron 60.0%
AGACTCCGAGGCAGCAGAGT+TGG + tig0023574:75006-75025 Msa1409870:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0023574 gene 69150 75380 69150 ID=Msa1409870;Name=Msa1409870
tig0023574 mRNA 69150 75380 69150 ID=Msa1409870-mRNA-1;Parent=Msa1409870;Name=Msa1409870-mRNA-1;_AED=0.06;_eAED=0.06;_QI=338|1|1|1|0.9|0.81|11|194|710
tig0023574 exon 69150 69464 69150 ID=Msa1409870-mRNA-1:exon:26245;Parent=Msa1409870-mRNA-1
tig0023574 exon 70526 71069 70526 ID=Msa1409870-mRNA-1:exon:26246;Parent=Msa1409870-mRNA-1
tig0023574 exon 71265 71430 71265 ID=Msa1409870-mRNA-1:exon:26247;Parent=Msa1409870-mRNA-1
tig0023574 exon 71530 71653 71530 ID=Msa1409870-mRNA-1:exon:26248;Parent=Msa1409870-mRNA-1
tig0023574 exon 71751 71863 71751 ID=Msa1409870-mRNA-1:exon:26249;Parent=Msa1409870-mRNA-1
tig0023574 exon 72316 72654 72316 ID=Msa1409870-mRNA-1:exon:26250;Parent=Msa1409870-mRNA-1
tig0023574 exon 73119 73346 73119 ID=Msa1409870-mRNA-1:exon:26251;Parent=Msa1409870-mRNA-1
tig0023574 exon 73471 73560 73471 ID=Msa1409870-mRNA-1:exon:26252;Parent=Msa1409870-mRNA-1
tig0023574 exon 73733 73783 73733 ID=Msa1409870-mRNA-1:exon:26253;Parent=Msa1409870-mRNA-1
tig0023574 exon 73979 74215 73979 ID=Msa1409870-mRNA-1:exon:26254;Parent=Msa1409870-mRNA-1
tig0023574 exon 74923 75380 74923 ID=Msa1409870-mRNA-1:exon:26255;Parent=Msa1409870-mRNA-1
tig0023574 five_prime_UTR 69150 69464 69150 ID=Msa1409870-mRNA-1:five_prime_utr;Parent=Msa1409870-mRNA-1
tig0023574 five_prime_UTR 70526 70548 70526 ID=Msa1409870-mRNA-1:five_prime_utr;Parent=Msa1409870-mRNA-1
tig0023574 CDS 70549 71069 70549 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 71265 71430 71265 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 71530 71653 71530 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 71751 71863 71751 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 72316 72654 72316 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 73119 73346 73119 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 73471 73560 73471 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 73733 73783 73733 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 73979 74215 73979 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 CDS 74923 75186 74923 ID=Msa1409870-mRNA-1:cds;Parent=Msa1409870-mRNA-1
tig0023574 three_prime_UTR 75187 75380 75187 ID=Msa1409870-mRNA-1:three_prime_utr;Parent=Msa1409870-mRNA-1
Gene Sequence

>Msa1409870

ATGCGGGATACTGAGAAGTTAAATAACCAAGGATCTACAAAACCGAGTAACACAAAGGAACATGTCAAGTTGAAGGTAGATTCCCCCCAGTTCAAAACAAGTAGCACAAAACACCAAAGGAAGAAAGACAGACTGAAATCAAAATCTCATAAACTCGGAGGTTGCACAAATGTGTCGGTGAAGACAGCTACTGATTCTTCCAATAAGGTGCCAACCAAGGATTCTTCAAATAAAAGATTGATTGTTGAACAAAGTCTACATAAAACTGATAGGAATTCAACAAAGATACAAGGAGGAAAAACTTCTCTTAATCATGATAGGAAAGGTGAGATAGATGTTGGTGATCAAGAGGAAAACATTCAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGACAGAAACATGATGTAGATCTTGATGATACTGTACGCCTCCAGAGAAGAACAAGGAATATCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACGCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTGCAACGAGCAAAAAAGCAGATTTTAAAATGCAAGCTTAGTATCCGTGATGCCATTCACCAACTGGATTCTCTTAGTTCAGTTGGTAGTATTGAAGGTTCTGTCATTGCTACAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAATTGCAAGATAAACGAAGTTTCTCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGAGACTGAAGACATTCCTCCTGAAGACCAAGGCTGGTTTTGCAAGTATTGTGACTGTAAGATAGAAATATTGGAGGCAACAAACGCGCATCTTGGGACTCATTTCCCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCTGACGGCGATGCTGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGAGAGGAAGGAAGAAAGCCATGGTGGCATCAACACAGAAGGAAATGATGAAAACGCATCTGATGATTCAAGTAGTTCTTCCAGCATGTGGTCTTTAAATGGAGAATGTTCTATGTTAGATGAAGGCATCAACCTTGAATATTATTCTAACGACCACATAGATTCTGATGAATCCGGGGAAATAGCATGTGGTCGTAGGCAGCGTAGAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGAAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGAAAAAGACGGAGAAGAGAAAAGGAGTCTGAGGCAGTTAATACTCTTATGACTTTACATGAGAGTGAAAATAAATATCCGAATAATAAGAACAATGATAGAATAAAAGGGAATTCTTCAGGCATAAAAAGACCTTGTTTTAGGTTTTCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCCGTGAAGGACGCCCTTTCGAAAGAAATGGGACTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAATGAGAAAGCTTCAAGAAGGAGGACAACAGCTTCAGAGTATCACTTCTAAGAACTCAAAGGATTCTACATCACAACATGTGCAGGAAGAAGAGGTTTTGAACCCGAAGATTGCAAAAATTACTGTGGTTCGTCCCTTGAAGAAGTGTGAAAATGTTACTGGCAAAGAAAAAACAAAAGCATCTAGCAGTCCTTTGAAGAAAAAGCGACCAGAAATACCTCCACACTTGGGAGAAAATGGCAACAAGGATTCCATGGAGGTCAGTGATGATGTTAGCTTAATGAAACTATTGCAAGAAAGGAAAAAGAAGGTAAGTTTTGCATTTGAAGGAGACTCCGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGACGAAAATAGATAGATTGAAGCAAAGATTAACTGGAGTTCAAAATTGCAGATCGGGTTCAGATGAAGTTCATTTGAATGAGCCATCTATTATGTATGTTCCTATAGCTGAGTTAAGGGAAAAGGTGAAATAG

Protein sequence

>Msa1409870

MRDTEKLNNQGSTKPSNTKEHVKLKVDSPQFKTSSTKHQRKKDRLKSKSHKLGGCTNVSVKTATDSSNKVPTKDSSNKRLIVEQSLHKTDRNSTKIQGGKTSLNHDRKGEIDVGDQEENIQKRKRRRKKKRQKHDVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTHFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGINTEGNDENASDDSSSSSSMWSLNGECSMLDEGINLEYYSNDHIDSDESGEIACGRRQRRAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRRRREKESEAVNTLMTLHESENKYPNNKNNDRIKGNSSGIKRPCFRFSHDAVEKLRQVFAENELPPKSVKDALSKEMGLDAAKVNKWFKNARYMALKMRKLQEGGQQLQSITSKNSKDSTSQHVQEEEVLNPKIAKITVVRPLKKCENVTGKEKTKASSSPLKKKRPEIPPHLGENGNKDSMEVSDDVSLMKLLQERKKKVSFAFEGDSEAAELEFERLSKVKTKIDRLKQRLTGVQNCRSGSDEVHLNEPSIMYVPIAELREKVK*