AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657580 MtrunA17_Chr4g0040761 99.138 116 1 0 1 116 672 787 5.95e-72 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657580 AT1G77030.1 58.947 95 30 3 1 95 680 765 2.76e-23 93.6

Find 42 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCCAAGATATCTCTTAA+AGG 0.249480 4_3:+67338239 Msa0657580:CDS
ATACAGATGCACCAGAATTT+TGG 0.268223 4_3:-67339073 None:intergenic
AATGATTTCTACCAAAATTC+TGG 0.270804 4_3:+67339062 Msa0657580:three_prime_UTR
TAATAGGAAAACGCAAATTT+TGG 0.271020 4_3:+67339137 Msa0657580:three_prime_UTR
TGTCCCTTTAAGAGATATCT+TGG 0.318198 4_3:-67338243 None:intergenic
AAGTATGAAACCCAAGTAAT+AGG 0.338310 4_3:+67339121 Msa0657580:three_prime_UTR
TTTATATATACCAGTCTTGT+TGG 0.345904 4_3:-67338198 None:intergenic
TTATTTCCTCCCTTTCTGCC+AGG 0.408523 4_3:-67338978 None:intergenic
CCGTTCAGAAATCAAAGATA+TGG 0.414166 4_3:+67338869 Msa0657580:CDS
AGACGAATATTAATTAATCA+AGG 0.439009 4_3:-67339297 None:intergenic
TTCTGAACGGACATGAGCAT+TGG 0.451510 4_3:-67338856 None:intergenic
ACTCCAAGATATCTCTTAAA+GGG 0.465300 4_3:+67338240 Msa0657580:CDS
TCGGGCAAACCTGGCAGAAA+GGG 0.481527 4_3:+67338969 Msa0657580:CDS
AAAACAAAGGCCAACAAGAC+TGG 0.481592 4_3:+67338188 Msa0657580:CDS
TTTGAACATACAAAATTCGT+TGG 0.493891 4_3:-67339214 None:intergenic
TGTAATTCCTACCACCTCCT+TGG 0.494025 4_3:-67338806 None:intergenic
CTTCAGAAGTTAATTAGTCA+TGG 0.499748 4_3:+67339029 Msa0657580:three_prime_UTR
TCTGAACGGACATGAGCATT+GGG 0.504949 4_3:-67338855 None:intergenic
ATCGGGCAAACCTGGCAGAA+AGG 0.506439 4_3:+67338968 Msa0657580:CDS
AAGTGCTGATGGTGATGCTC+AGG 0.527916 4_3:+67338265 Msa0657580:CDS
ATGAAGAGCAAGTCGCCAAA+GGG 0.541237 4_3:+67338939 Msa0657580:CDS
GAAGTTAATTAGTCATGGAA+AGG 0.542560 4_3:+67339034 Msa0657580:three_prime_UTR
GACGAATATTAATTAATCAA+GGG 0.542887 4_3:-67339296 None:intergenic
CTTAAAGGGACAAGTGCTGA+TGG 0.546544 4_3:+67338254 Msa0657580:CDS
TCTGTATCTTCAAAAGAATG+AGG 0.551612 4_3:+67339089 Msa0657580:three_prime_UTR
CCATATCTTTGATTTCTGAA+CGG 0.567360 4_3:-67338869 None:intergenic
ACGAATATTAATTAATCAAG+GGG 0.567848 4_3:-67339295 None:intergenic
TCAAGGGGCTGCTATGTACA+AGG 0.573356 4_3:-67339280 None:intergenic
TATGAAGAGCAAGTCGCCAA+AGG 0.586947 4_3:+67338938 Msa0657580:CDS
TAATAATGAACAAAAGTCGT+TGG 0.588787 4_3:-67339180 None:intergenic
CTGTATCTTCAAAAGAATGA+GGG 0.597833 4_3:+67339090 Msa0657580:three_prime_UTR
GCAGGATCTTACCAAGGAGG+TGG 0.601477 4_3:+67338795 Msa0657580:intron
GGCAAACCTGGCAGAAAGGG+AGG 0.611042 4_3:+67338972 Msa0657580:CDS
CAGGAATCAAGAAGTTCAAG+AGG 0.613056 4_3:+67338284 Msa0657580:CDS
AGATATGGATCAAATTCGAA+AGG 0.621726 4_3:+67338884 Msa0657580:CDS
GATCTTACCAAGGAGGTGGT+AGG 0.625386 4_3:+67338799 Msa0657580:CDS
TGGATCAAATTCGAAAGGAG+AGG 0.630192 4_3:+67338889 Msa0657580:CDS
TGTAATGCAGGATCTTACCA+AGG 0.633767 4_3:+67338789 Msa0657580:intron
TGTATCTTCAAAAGAATGAG+GGG 0.641007 4_3:+67339091 Msa0657580:three_prime_UTR
GGAGGTGGTAGGAATTACAA+AGG 0.689823 4_3:+67338810 Msa0657580:CDS
GGTGGTAGGAATTACAAAGG+CGG 0.725568 4_3:+67338813 Msa0657580:CDS
AATGCAGGATCTTACCAAGG+AGG 0.746430 4_3:+67338792 Msa0657580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTACTTACTTTAATTT+AGG + chr4_3:67338319-67338338 Msa0657580:intron 15.0%
!!! TCATTACTTACTTTAATTTA+GGG + chr4_3:67338320-67338339 Msa0657580:intron 15.0%
!!! TTTGTTTCTTGAATATTTTT+TGG - chr4_3:67338482-67338501 None:intergenic 15.0%
!!! TTTTTTTTGTTGGTTATTAA+TGG + chr4_3:67338742-67338761 Msa0657580:intron 15.0%
!!! TTCATTACTTACTTTAATTT+AGG + chr4_3:67338319-67338338 Msa0657580:intron 15.0%
!!! TCATTACTTACTTTAATTTA+GGG + chr4_3:67338320-67338339 Msa0657580:intron 15.0%
!!! TTTGTTTCTTGAATATTTTT+TGG - chr4_3:67338482-67338501 None:intergenic 15.0%
!!! TTTTTTTTGTTGGTTATTAA+TGG + chr4_3:67338742-67338761 Msa0657580:intron 15.0%
!!! TTTAATTTAGGGATGATAAT+GGG + chr4_3:67338331-67338350 Msa0657580:intron 20.0%
!! TATTCAAGAAACAAAAACAT+AGG + chr4_3:67338487-67338506 Msa0657580:intron 20.0%
!!! TTTAATTTAGGGATGATAAT+GGG + chr4_3:67338331-67338350 Msa0657580:intron 20.0%
!! TATTCAAGAAACAAAAACAT+AGG + chr4_3:67338487-67338506 Msa0657580:intron 20.0%
!! TTTATATATACCAGTCTTGT+TGG - chr4_3:67338201-67338220 None:intergenic 25.0%
! AGACTGGTATATATAAAAAG+TGG + chr4_3:67338204-67338223 Msa0657580:CDS 25.0%
! TGGTATATATAAAAAGTGGA+AGG + chr4_3:67338208-67338227 Msa0657580:CDS 25.0%
!! CTTTAATTTAGGGATGATAA+TGG + chr4_3:67338330-67338349 Msa0657580:intron 25.0%
!! TTAATTTAGGGATGATAATG+GGG + chr4_3:67338332-67338351 Msa0657580:intron 25.0%
!! ATATGCTACTTAGATAAGAA+TGG - chr4_3:67338553-67338572 None:intergenic 25.0%
! TCTAAGTAGCATATGAAATT+TGG + chr4_3:67338559-67338578 Msa0657580:intron 25.0%
!!! CGATTTTAAAAATGAGATCA+AGG - chr4_3:67338618-67338637 None:intergenic 25.0%
! AATATCAAAAGAATGATGCA+TGG + chr4_3:67338711-67338730 Msa0657580:intron 25.0%
!!! GGTTGTAAGATTTTTTTTGT+TGG + chr4_3:67338732-67338751 Msa0657580:intron 25.0%
!! CTTCATATAAGAAATTTTGC+TGG - chr4_3:67338925-67338944 None:intergenic 25.0%
!!! AATCCAAGTAGATGTTTTTT+CGG + chr4_3:67339006-67339025 Msa0657580:exon 25.0%
! AATGATTTCTACCAAAATTC+TGG + chr4_3:67339062-67339081 Msa0657580:three_prime_UTR 25.0%
!! TAATAGGAAAACGCAAATTT+TGG + chr4_3:67339137-67339156 Msa0657580:three_prime_UTR 25.0%
! TAATAATGAACAAAAGTCGT+TGG - chr4_3:67339183-67339202 None:intergenic 25.0%
! TTTGAACATACAAAATTCGT+TGG - chr4_3:67339217-67339236 None:intergenic 25.0%
!! TTTATATATACCAGTCTTGT+TGG - chr4_3:67338201-67338220 None:intergenic 25.0%
! AGACTGGTATATATAAAAAG+TGG + chr4_3:67338204-67338223 Msa0657580:CDS 25.0%
! TGGTATATATAAAAAGTGGA+AGG + chr4_3:67338208-67338227 Msa0657580:CDS 25.0%
!! CTTTAATTTAGGGATGATAA+TGG + chr4_3:67338330-67338349 Msa0657580:intron 25.0%
!! TTAATTTAGGGATGATAATG+GGG + chr4_3:67338332-67338351 Msa0657580:intron 25.0%
!! ATATGCTACTTAGATAAGAA+TGG - chr4_3:67338553-67338572 None:intergenic 25.0%
! TCTAAGTAGCATATGAAATT+TGG + chr4_3:67338559-67338578 Msa0657580:intron 25.0%
!!! CGATTTTAAAAATGAGATCA+AGG - chr4_3:67338618-67338637 None:intergenic 25.0%
! AATATCAAAAGAATGATGCA+TGG + chr4_3:67338711-67338730 Msa0657580:intron 25.0%
!!! GGTTGTAAGATTTTTTTTGT+TGG + chr4_3:67338732-67338751 Msa0657580:intron 25.0%
!! CTTCATATAAGAAATTTTGC+TGG - chr4_3:67338925-67338944 None:intergenic 25.0%
!!! AATCCAAGTAGATGTTTTTT+CGG + chr4_3:67339006-67339025 Msa0657580:exon 25.0%
! AATGATTTCTACCAAAATTC+TGG + chr4_3:67339062-67339081 Msa0657580:three_prime_UTR 25.0%
!! TAATAGGAAAACGCAAATTT+TGG + chr4_3:67339137-67339156 Msa0657580:three_prime_UTR 25.0%
! TAATAATGAACAAAAGTCGT+TGG - chr4_3:67339183-67339202 None:intergenic 25.0%
! TTTGAACATACAAAATTCGT+TGG - chr4_3:67339217-67339236 None:intergenic 25.0%
ACTCCAAGATATCTCTTAAA+GGG + chr4_3:67338240-67338259 Msa0657580:CDS 30.0%
TTTGCATCTATGAATATCGT+GGG + chr4_3:67338401-67338420 Msa0657580:intron 30.0%
AAGAAACAAAAACATAGGCA+TGG + chr4_3:67338492-67338511 Msa0657580:intron 30.0%
!!! CTTACTGATTTTTGTAATGC+AGG + chr4_3:67338777-67338796 Msa0657580:intron 30.0%
! CCATATCTTTGATTTCTGAA+CGG - chr4_3:67338872-67338891 None:intergenic 30.0%
AGATATGGATCAAATTCGAA+AGG + chr4_3:67338884-67338903 Msa0657580:CDS 30.0%
CTTCAGAAGTTAATTAGTCA+TGG + chr4_3:67339029-67339048 Msa0657580:three_prime_UTR 30.0%
GAAGTTAATTAGTCATGGAA+AGG + chr4_3:67339034-67339053 Msa0657580:three_prime_UTR 30.0%
TCTGTATCTTCAAAAGAATG+AGG + chr4_3:67339089-67339108 Msa0657580:three_prime_UTR 30.0%
CTGTATCTTCAAAAGAATGA+GGG + chr4_3:67339090-67339109 Msa0657580:three_prime_UTR 30.0%
TGTATCTTCAAAAGAATGAG+GGG + chr4_3:67339091-67339110 Msa0657580:three_prime_UTR 30.0%
AAGTATGAAACCCAAGTAAT+AGG + chr4_3:67339121-67339140 Msa0657580:three_prime_UTR 30.0%
! TTTGCGTTTTCCTATTACTT+GGG - chr4_3:67339134-67339153 None:intergenic 30.0%
! ATTTGCGTTTTCCTATTACT+TGG - chr4_3:67339135-67339154 None:intergenic 30.0%
ACTCCAAGATATCTCTTAAA+GGG + chr4_3:67338240-67338259 Msa0657580:CDS 30.0%
TTTGCATCTATGAATATCGT+GGG + chr4_3:67338401-67338420 Msa0657580:intron 30.0%
AAGAAACAAAAACATAGGCA+TGG + chr4_3:67338492-67338511 Msa0657580:intron 30.0%
!!! CTTACTGATTTTTGTAATGC+AGG + chr4_3:67338777-67338796 Msa0657580:intron 30.0%
! CCATATCTTTGATTTCTGAA+CGG - chr4_3:67338872-67338891 None:intergenic 30.0%
AGATATGGATCAAATTCGAA+AGG + chr4_3:67338884-67338903 Msa0657580:CDS 30.0%
CTTCAGAAGTTAATTAGTCA+TGG + chr4_3:67339029-67339048 Msa0657580:three_prime_UTR 30.0%
GAAGTTAATTAGTCATGGAA+AGG + chr4_3:67339034-67339053 Msa0657580:three_prime_UTR 30.0%
TCTGTATCTTCAAAAGAATG+AGG + chr4_3:67339089-67339108 Msa0657580:three_prime_UTR 30.0%
CTGTATCTTCAAAAGAATGA+GGG + chr4_3:67339090-67339109 Msa0657580:three_prime_UTR 30.0%
TGTATCTTCAAAAGAATGAG+GGG + chr4_3:67339091-67339110 Msa0657580:three_prime_UTR 30.0%
AAGTATGAAACCCAAGTAAT+AGG + chr4_3:67339121-67339140 Msa0657580:three_prime_UTR 30.0%
! TTTGCGTTTTCCTATTACTT+GGG - chr4_3:67339134-67339153 None:intergenic 30.0%
! ATTTGCGTTTTCCTATTACT+TGG - chr4_3:67339135-67339154 None:intergenic 30.0%
CACTCCAAGATATCTCTTAA+AGG + chr4_3:67338239-67338258 Msa0657580:CDS 35.0%
! TGTCCCTTTAAGAGATATCT+TGG - chr4_3:67338246-67338265 None:intergenic 35.0%
TTCATAGATGCAAACATCCA+TGG - chr4_3:67338395-67338414 None:intergenic 35.0%
GTTTGCATCTATGAATATCG+TGG + chr4_3:67338400-67338419 Msa0657580:intron 35.0%
CTATGAATATCGTGGGATTT+AGG + chr4_3:67338408-67338427 Msa0657580:intron 35.0%
GAAACATGACAAAGCAAATG+AGG - chr4_3:67338641-67338660 None:intergenic 35.0%
TTACATGCAAAACTAGTTCC+TGG - chr4_3:67338672-67338691 None:intergenic 35.0%
! GTTTTGCATGTAATATCTGC+TGG + chr4_3:67338679-67338698 Msa0657580:intron 35.0%
CCGTTCAGAAATCAAAGATA+TGG + chr4_3:67338869-67338888 Msa0657580:CDS 35.0%
AAGCCGAAAAAACATCTACT+TGG - chr4_3:67339012-67339031 None:intergenic 35.0%
! ATACAGATGCACCAGAATTT+TGG - chr4_3:67339076-67339095 None:intergenic 35.0%
CACTCCAAGATATCTCTTAA+AGG + chr4_3:67338239-67338258 Msa0657580:CDS 35.0%
! TGTCCCTTTAAGAGATATCT+TGG - chr4_3:67338246-67338265 None:intergenic 35.0%
TTCATAGATGCAAACATCCA+TGG - chr4_3:67338395-67338414 None:intergenic 35.0%
GTTTGCATCTATGAATATCG+TGG + chr4_3:67338400-67338419 Msa0657580:intron 35.0%
CTATGAATATCGTGGGATTT+AGG + chr4_3:67338408-67338427 Msa0657580:intron 35.0%
GAAACATGACAAAGCAAATG+AGG - chr4_3:67338641-67338660 None:intergenic 35.0%
TTACATGCAAAACTAGTTCC+TGG - chr4_3:67338672-67338691 None:intergenic 35.0%
! GTTTTGCATGTAATATCTGC+TGG + chr4_3:67338679-67338698 Msa0657580:intron 35.0%
CCGTTCAGAAATCAAAGATA+TGG + chr4_3:67338869-67338888 Msa0657580:CDS 35.0%
AAGCCGAAAAAACATCTACT+TGG - chr4_3:67339012-67339031 None:intergenic 35.0%
! ATACAGATGCACCAGAATTT+TGG - chr4_3:67339076-67339095 None:intergenic 35.0%
AGAGAGTGGTGCAAAAACAA+AGG + chr4_3:67338175-67338194 Msa0657580:CDS 40.0%
AAAACAAAGGCCAACAAGAC+TGG + chr4_3:67338188-67338207 Msa0657580:CDS 40.0%
CAGGAATCAAGAAGTTCAAG+AGG + chr4_3:67338284-67338303 Msa0657580:CDS 40.0%
!! ATTTAGGGATGATAATGGGG+TGG + chr4_3:67338335-67338354 Msa0657580:intron 40.0%
!! TTTAGGGATGATAATGGGGT+GGG + chr4_3:67338336-67338355 Msa0657580:intron 40.0%
AACATCCATGGATATAGACG+TGG - chr4_3:67338383-67338402 None:intergenic 40.0%
AGAATGGTTGCTAAACAGAG+CGG - chr4_3:67338537-67338556 None:intergenic 40.0%
ATGCAAAACTAGTTCCTGGA+TGG - chr4_3:67338668-67338687 None:intergenic 40.0%
TGCATGTAATATCTGCTGGT+TGG + chr4_3:67338683-67338702 Msa0657580:intron 40.0%
! TGTAATATCTGCTGGTTGGT+TGG + chr4_3:67338687-67338706 Msa0657580:intron 40.0%
TGTAATGCAGGATCTTACCA+AGG + chr4_3:67338789-67338808 Msa0657580:intron 40.0%
TGGATCAAATTCGAAAGGAG+AGG + chr4_3:67338889-67338908 Msa0657580:CDS 40.0%
GTCGCCAAAGGGTAAAAAAT+CGG + chr4_3:67338950-67338969 Msa0657580:CDS 40.0%
TCGCCAAAGGGTAAAAAATC+GGG + chr4_3:67338951-67338970 Msa0657580:CDS 40.0%
!!! TTGCCCGATTTTTTACCCTT+TGG - chr4_3:67338957-67338976 None:intergenic 40.0%
AGAGAGTGGTGCAAAAACAA+AGG + chr4_3:67338175-67338194 Msa0657580:CDS 40.0%
AAAACAAAGGCCAACAAGAC+TGG + chr4_3:67338188-67338207 Msa0657580:CDS 40.0%
CAGGAATCAAGAAGTTCAAG+AGG + chr4_3:67338284-67338303 Msa0657580:CDS 40.0%
!! ATTTAGGGATGATAATGGGG+TGG + chr4_3:67338335-67338354 Msa0657580:intron 40.0%
!! TTTAGGGATGATAATGGGGT+GGG + chr4_3:67338336-67338355 Msa0657580:intron 40.0%
AACATCCATGGATATAGACG+TGG - chr4_3:67338383-67338402 None:intergenic 40.0%
AGAATGGTTGCTAAACAGAG+CGG - chr4_3:67338537-67338556 None:intergenic 40.0%
ATGCAAAACTAGTTCCTGGA+TGG - chr4_3:67338668-67338687 None:intergenic 40.0%
TGCATGTAATATCTGCTGGT+TGG + chr4_3:67338683-67338702 Msa0657580:intron 40.0%
! TGTAATATCTGCTGGTTGGT+TGG + chr4_3:67338687-67338706 Msa0657580:intron 40.0%
TGTAATGCAGGATCTTACCA+AGG + chr4_3:67338789-67338808 Msa0657580:intron 40.0%
TGGATCAAATTCGAAAGGAG+AGG + chr4_3:67338889-67338908 Msa0657580:CDS 40.0%
GTCGCCAAAGGGTAAAAAAT+CGG + chr4_3:67338950-67338969 Msa0657580:CDS 40.0%
TCGCCAAAGGGTAAAAAATC+GGG + chr4_3:67338951-67338970 Msa0657580:CDS 40.0%
!!! TTGCCCGATTTTTTACCCTT+TGG - chr4_3:67338957-67338976 None:intergenic 40.0%
!! CTTAAAGGGACAAGTGCTGA+TGG + chr4_3:67338254-67338273 Msa0657580:CDS 45.0%
ATATAGACGTGGATGGATGC+GGG - chr4_3:67338372-67338391 None:intergenic 45.0%
GATATAGACGTGGATGGATG+CGG - chr4_3:67338373-67338392 None:intergenic 45.0%
TCCATCCACGTCTATATCCA+TGG + chr4_3:67338375-67338394 Msa0657580:intron 45.0%
TCCATGGATATAGACGTGGA+TGG - chr4_3:67338379-67338398 None:intergenic 45.0%
TATCGTGGGATTTAGGCTCT+AGG + chr4_3:67338415-67338434 Msa0657580:intron 45.0%
CAAAACTAGTTCCTGGATGG+CGG - chr4_3:67338665-67338684 None:intergenic 45.0%
AATGCAGGATCTTACCAAGG+AGG + chr4_3:67338792-67338811 Msa0657580:intron 45.0%
TGTAATTCCTACCACCTCCT+TGG - chr4_3:67338809-67338828 None:intergenic 45.0%
GGAGGTGGTAGGAATTACAA+AGG + chr4_3:67338810-67338829 Msa0657580:CDS 45.0%
GGTGGTAGGAATTACAAAGG+CGG + chr4_3:67338813-67338832 Msa0657580:CDS 45.0%
TCTGAACGGACATGAGCATT+GGG - chr4_3:67338858-67338877 None:intergenic 45.0%
TTCTGAACGGACATGAGCAT+TGG - chr4_3:67338859-67338878 None:intergenic 45.0%
TATGAAGAGCAAGTCGCCAA+AGG + chr4_3:67338938-67338957 Msa0657580:CDS 45.0%
ATGAAGAGCAAGTCGCCAAA+GGG + chr4_3:67338939-67338958 Msa0657580:CDS 45.0%
GGTAAAAAATCGGGCAAACC+TGG + chr4_3:67338960-67338979 Msa0657580:CDS 45.0%
TTATTTCCTCCCTTTCTGCC+AGG - chr4_3:67338981-67339000 None:intergenic 45.0%
!! CTTAAAGGGACAAGTGCTGA+TGG + chr4_3:67338254-67338273 Msa0657580:CDS 45.0%
ATATAGACGTGGATGGATGC+GGG - chr4_3:67338372-67338391 None:intergenic 45.0%
GATATAGACGTGGATGGATG+CGG - chr4_3:67338373-67338392 None:intergenic 45.0%
TCCATCCACGTCTATATCCA+TGG + chr4_3:67338375-67338394 Msa0657580:intron 45.0%
TCCATGGATATAGACGTGGA+TGG - chr4_3:67338379-67338398 None:intergenic 45.0%
TATCGTGGGATTTAGGCTCT+AGG + chr4_3:67338415-67338434 Msa0657580:intron 45.0%
CAAAACTAGTTCCTGGATGG+CGG - chr4_3:67338665-67338684 None:intergenic 45.0%
AATGCAGGATCTTACCAAGG+AGG + chr4_3:67338792-67338811 Msa0657580:intron 45.0%
TGTAATTCCTACCACCTCCT+TGG - chr4_3:67338809-67338828 None:intergenic 45.0%
GGAGGTGGTAGGAATTACAA+AGG + chr4_3:67338810-67338829 Msa0657580:CDS 45.0%
GGTGGTAGGAATTACAAAGG+CGG + chr4_3:67338813-67338832 Msa0657580:CDS 45.0%
TCTGAACGGACATGAGCATT+GGG - chr4_3:67338858-67338877 None:intergenic 45.0%
TTCTGAACGGACATGAGCAT+TGG - chr4_3:67338859-67338878 None:intergenic 45.0%
TATGAAGAGCAAGTCGCCAA+AGG + chr4_3:67338938-67338957 Msa0657580:CDS 45.0%
ATGAAGAGCAAGTCGCCAAA+GGG + chr4_3:67338939-67338958 Msa0657580:CDS 45.0%
GGTAAAAAATCGGGCAAACC+TGG + chr4_3:67338960-67338979 Msa0657580:CDS 45.0%
TTATTTCCTCCCTTTCTGCC+AGG - chr4_3:67338981-67339000 None:intergenic 45.0%
!! AAGTGCTGATGGTGATGCTC+AGG + chr4_3:67338265-67338284 Msa0657580:CDS 50.0%
TATAGACGTGGATGGATGCG+GGG - chr4_3:67338371-67338390 None:intergenic 50.0%
GATCTTACCAAGGAGGTGGT+AGG + chr4_3:67338799-67338818 Msa0657580:CDS 50.0%
TCAAGGGGCTGCTATGTACA+AGG - chr4_3:67339283-67339302 None:intergenic 50.0%
!! AAGTGCTGATGGTGATGCTC+AGG + chr4_3:67338265-67338284 Msa0657580:CDS 50.0%
TATAGACGTGGATGGATGCG+GGG - chr4_3:67338371-67338390 None:intergenic 50.0%
GATCTTACCAAGGAGGTGGT+AGG + chr4_3:67338799-67338818 Msa0657580:CDS 50.0%
TCAAGGGGCTGCTATGTACA+AGG - chr4_3:67339283-67339302 None:intergenic 50.0%
ATAGACGTGGATGGATGCGG+GGG - chr4_3:67338370-67338389 None:intergenic 55.0%
GTCATGTTTCTCCGCCATCC+AGG + chr4_3:67338651-67338670 Msa0657580:intron 55.0%
GCAGGATCTTACCAAGGAGG+TGG + chr4_3:67338795-67338814 Msa0657580:intron 55.0%
ATCGGGCAAACCTGGCAGAA+AGG + chr4_3:67338968-67338987 Msa0657580:CDS 55.0%
TCGGGCAAACCTGGCAGAAA+GGG + chr4_3:67338969-67338988 Msa0657580:CDS 55.0%
ATAGACGTGGATGGATGCGG+GGG - chr4_3:67338370-67338389 None:intergenic 55.0%
GTCATGTTTCTCCGCCATCC+AGG + chr4_3:67338651-67338670 Msa0657580:intron 55.0%
GCAGGATCTTACCAAGGAGG+TGG + chr4_3:67338795-67338814 Msa0657580:intron 55.0%
ATCGGGCAAACCTGGCAGAA+AGG + chr4_3:67338968-67338987 Msa0657580:CDS 55.0%
TCGGGCAAACCTGGCAGAAA+GGG + chr4_3:67338969-67338988 Msa0657580:CDS 55.0%
GGCAAACCTGGCAGAAAGGG+AGG + chr4_3:67338972-67338991 Msa0657580:CDS 60.0%
GGCAAACCTGGCAGAAAGGG+AGG + chr4_3:67338972-67338991 Msa0657580:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 67338173 67339316 67338173 ID=Msa0657580;Name=Msa0657580
chr4_3 mRNA 67338173 67339316 67338173 ID=Msa0657580-mRNA-1;Parent=Msa0657580;Name=Msa0657580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|2|300|116
chr4_3 exon 67338173 67338305 67338173 ID=Msa0657580-mRNA-1:exon:19363;Parent=Msa0657580-mRNA-1
chr4_3 exon 67338799 67339316 67338799 ID=Msa0657580-mRNA-1:exon:19364;Parent=Msa0657580-mRNA-1
chr4_3 CDS 67338173 67338305 67338173 ID=Msa0657580-mRNA-1:cds;Parent=Msa0657580-mRNA-1
chr4_3 CDS 67338799 67339016 67338799 ID=Msa0657580-mRNA-1:cds;Parent=Msa0657580-mRNA-1
chr4_3 three_prime_UTR 67339017 67339316 67339017 ID=Msa0657580-mRNA-1:three_prime_utr;Parent=Msa0657580-mRNA-1
Gene Sequence

>Msa0657580

ACAGAGAGTGGTGCAAAAACAAAGGCCAACAAGACTGGTATATATAAAAAGTGGAAGGAACGCTCGCACTCCAAGATATCTCTTAAAGGGACAAGTGCTGATGGTGATGCTCAGGAATCAAGAAGTTCAAGAGGATCTTACCAAGGAGGTGGTAGGAATTACAAAGGCGGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTCCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAGAAAGCCAGCAAAATTTCTTATATGAAGAGCAAGTCGCCAAAGGGTAAAAAATCGGGCAAACCTGGCAGAAAGGGAGGAAATAAAAGAAAATCCAAGTAG

Protein sequence

>Msa0657580

TESGAKTKANKTGIYKKWKERSHSKISLKGTSADGDAQESRSSRGSYQGGGRNYKGGKKQHSMPNAHVRSEIKDMDQIRKERQKKASKISYMKSKSPKGKKSGKPGRKGGNKRKSK*