Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445780 | XP_003594033.1 | 85.994 | 714 | 81 | 2 | 1 | 695 | 1 | 714 | 0.0 | 1256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445780 | sp|O78328|DXS_CAPAN | 73.157 | 719 | 168 | 4 | 1 | 695 | 1 | 718 | 0.0 | 1046 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445780 | G7IFK9 | 85.994 | 714 | 81 | 2 | 1 | 695 | 1 | 714 | 0.0 | 1256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092630 | Msa0445780 | 0.922598 | 7.988175e-89 | -8.615850e-47 |
| Msa0153910 | Msa0445780 | 0.827300 | 1.688142e-54 | -8.615850e-47 |
| Msa0414420 | Msa0445780 | 0.803724 | 3.041113e-49 | -8.615850e-47 |
| Msa0445780 | Msa0452900 | 0.811678 | 6.209394e-51 | -8.615850e-47 |
| Msa0445780 | Msa0493000 | 0.802125 | 6.508311e-49 | -8.615850e-47 |
| Msa0445780 | Msa0650630 | 0.806615 | 7.548776e-50 | -8.615850e-47 |
| Msa0445780 | Msa0731940 | 0.800029 | 1.745236e-48 | -8.615850e-47 |
| Msa0445780 | Msa0767720 | 0.805776 | 1.133737e-49 | -8.615850e-47 |
| Msa0445780 | Msa0872230 | 0.882818 | 7.571195e-71 | -8.615850e-47 |
| Msa0445780 | Msa0899430 | 0.804449 | 2.148693e-49 | -8.615850e-47 |
| Msa0445780 | Msa0958550 | 0.800449 | 1.433635e-48 | -8.615850e-47 |
| Msa0445780 | Msa0974870 | 0.906130 | 2.060382e-80 | -8.615850e-47 |
| Msa0445780 | Msa0981270 | 0.919119 | 6.700822e-87 | -8.615850e-47 |
| Msa0445780 | Msa1014540 | 0.818023 | 2.433691e-52 | -8.615850e-47 |
| Msa0445780 | Msa1016280 | 0.804630 | 1.969999e-49 | -8.615850e-47 |
| Msa0445780 | Msa1075220 | -0.801720 | 7.881646e-49 | -8.615850e-47 |
| Msa0445780 | Msa1121490 | 0.801780 | 7.660432e-49 | -8.615850e-47 |
| Msa0445780 | Msa1162550 | -0.801785 | 7.644762e-49 | -8.615850e-47 |
| Msa0445780 | Msa1192640 | 0.807171 | 5.757130e-50 | -8.615850e-47 |
| Msa0445780 | Msa1284680 | 0.808910 | 2.455270e-50 | -8.615850e-47 |
| Msa0445780 | Msa1285930 | 0.828758 | 7.523311e-55 | -8.615850e-47 |
| Msa0445780 | Msa1287810 | 0.805366 | 1.382157e-49 | -8.615850e-47 |
| Msa0445780 | Msa1340590 | 0.801296 | 9.628251e-49 | -8.615850e-47 |
| Msa0445780 | Msa1397150 | 0.923707 | 1.862289e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445780 | MtrunA17_Chr2g0286641 | 85.994 | 714 | 81 | 2 | 1 | 695 | 1 | 714 | 0.0 | 1256 |
| Msa0445780 | MtrunA17_Chr4g0066611 | 75.036 | 701 | 149 | 3 | 21 | 695 | 16 | 716 | 0.0 | 1057 |
| Msa0445780 | MtrunA17_Chr8g0367181 | 64.577 | 686 | 206 | 3 | 44 | 692 | 23 | 708 | 0.0 | 889 |
| Msa0445780 | MtrunA17_Chr8g0367201 | 66.306 | 647 | 196 | 1 | 68 | 692 | 62 | 708 | 0.0 | 885 |
| Msa0445780 | MtrunA17_Chr3g0138171 | 55.521 | 652 | 262 | 5 | 67 | 695 | 60 | 706 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445780 | AT4G15560.1 | 73.661 | 672 | 154 | 2 | 44 | 692 | 45 | 716 | 0.0 | 1015 |
| Msa0445780 | AT3G21500.3 | 74.961 | 635 | 148 | 3 | 59 | 692 | 50 | 674 | 0.0 | 984 |
| Msa0445780 | AT3G21500.2 | 75.932 | 590 | 131 | 3 | 59 | 647 | 50 | 629 | 0.0 | 924 |
| Msa0445780 | AT3G21500.1 | 75.763 | 590 | 131 | 4 | 59 | 647 | 50 | 628 | 0.0 | 917 |
| Msa0445780 | AT5G11380.1 | 51.360 | 662 | 273 | 9 | 56 | 692 | 59 | 696 | 0.0 | 650 |
| Msa0445780 | AT5G11380.3 | 47.710 | 524 | 225 | 9 | 56 | 554 | 59 | 558 | 4.58e-157 | 466 |
| Msa0445780 | AT5G11380.2 | 48.708 | 503 | 212 | 7 | 56 | 534 | 59 | 539 | 2.76e-156 | 464 |
| Msa0445780 | AT5G11380.4 | 48.089 | 497 | 212 | 7 | 56 | 528 | 59 | 533 | 1.67e-150 | 450 |
Find 184 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATGTTGTCACTGAAAA+AGG | 0.249215 | 3_3:-20555551 | Msa0445780:CDS |
| TTCTCATGTTGCTCAGTTCA+TGG | 0.260981 | 3_3:-20553704 | Msa0445780:CDS |
| GAGAGTGAATTTGATAGTTT+TGG | 0.274045 | 3_3:-20557290 | Msa0445780:CDS |
| GAAGAAACCTACACCCCTTT+TGG | 0.281281 | 3_3:-20558199 | Msa0445780:CDS |
| AGGCGAAAGAGTGGCCCTTT+TGG | 0.287344 | 3_3:-20553908 | Msa0445780:CDS |
| TATGGCATGTCTACCTAATA+TGG | 0.308128 | 3_3:-20554356 | Msa0445780:CDS |
| TATGAAGACTCTAACGATTA+AGG | 0.310044 | 3_3:-20558154 | Msa0445780:intron |
| GGAGCCATCACCACCATATT+AGG | 0.321626 | 3_3:+20554343 | None:intergenic |
| CATGGCATGATTGGTGGTTC+TGG | 0.323646 | 3_3:-20555695 | Msa0445780:CDS |
| GCCCTTGATGGTCTTCTTGA+TGG | 0.325921 | 3_3:-20553682 | Msa0445780:CDS |
| GCTCAGTTCATGGCCCTTGA+TGG | 0.326804 | 3_3:-20553694 | Msa0445780:CDS |
| GAAGGATCAATAGGAGGATT+TGG | 0.330255 | 3_3:-20553727 | Msa0445780:CDS |
| AAACCTAACCTGGTTGAGTC+TGG | 0.337829 | 3_3:+20558488 | None:intergenic |
| CCATGGTCGATATAAATATC+TGG | 0.342613 | 3_3:+20553302 | None:intergenic |
| CAAAATTCTTGGACAAAGAA+AGG | 0.345530 | 3_3:-20553216 | Msa0445780:CDS |
| CGTTAGAGTCTTCATATCTT+CGG | 0.357380 | 3_3:+20558161 | None:intergenic |
| TTGTCGATAACAAATCTTAC+TGG | 0.362049 | 3_3:+20554436 | None:intergenic |
| ATCCAGAGTGTTTCTCAAAC+TGG | 0.373688 | 3_3:-20557624 | Msa0445780:CDS |
| TGGTGGTTCTAACTATCAAT+GGG | 0.383908 | 3_3:-20558535 | Msa0445780:CDS |
| TTCCATTTGCCCGTGGAAAT+CGG | 0.388002 | 3_3:+20554251 | None:intergenic |
| GACGAGTAAATTGCACAAAA+AGG | 0.388561 | 3_3:+20555051 | None:intergenic |
| GCTGGATTTGTTGGAGAAGA+TGG | 0.397017 | 3_3:-20554412 | Msa0445780:CDS |
| GTTAAGAGTCCTAAGAAAAC+TGG | 0.398320 | 3_3:-20555584 | Msa0445780:CDS |
| AAGGGCCACTCTTTCGCCTT+CGG | 0.398795 | 3_3:+20553912 | None:intergenic |
| ATAAAATACTCACTGGTAGA+AGG | 0.400303 | 3_3:-20557370 | Msa0445780:CDS |
| GCTGCAATGGGAGGTGGAAC+CGG | 0.400403 | 3_3:-20555180 | Msa0445780:CDS |
| GACTGCAGGGCAGGCATTTG+AGG | 0.403656 | 3_3:-20556517 | Msa0445780:CDS |
| GCTGAGCAATTAGCTGTTGC+TGG | 0.407903 | 3_3:-20553272 | Msa0445780:CDS |
| ACTCTTAACTTGTTTGAGAA+TGG | 0.410412 | 3_3:+20555598 | None:intergenic |
| GACTACATTGGTCCTGTTGA+TGG | 0.412366 | 3_3:-20555644 | Msa0445780:CDS |
| ATCGACAAAGCTGGATTTGT+TGG | 0.413314 | 3_3:-20554421 | Msa0445780:CDS |
| CTTCGAGATGTTTCGATGTA+GGG | 0.413316 | 3_3:-20555131 | Msa0445780:CDS |
| CTACCTACCGCGGACCTTCA+TGG | 0.415412 | 3_3:-20556426 | Msa0445780:CDS |
| AGAGCACCAACTGGTGGTAT+TGG | 0.417530 | 3_3:+20556402 | None:intergenic |
| AAAACTGTTGCTGCTATTTG+AGG | 0.418915 | 3_3:+20553239 | None:intergenic |
| CTGCTGTCCCAAAGCCCAAA+AGG | 0.419334 | 3_3:+20553893 | None:intergenic |
| TTGGTGGTTCTAACTATCAA+TGG | 0.424273 | 3_3:-20558536 | Msa0445780:CDS |
| ACAGCTAGGTCGATCGTTAA+TGG | 0.425372 | 3_3:+20554276 | None:intergenic |
| GTGAATATTGCTAAGGTTGA+TGG | 0.425949 | 3_3:-20555725 | Msa0445780:intron |
| GTTAGAGTCTTCATATCTTC+GGG | 0.428007 | 3_3:+20558162 | None:intergenic |
| GCTAAGTTTGATCCTGCAAC+TGG | 0.431828 | 3_3:-20555306 | Msa0445780:CDS |
| TCTCAAACTGGAGGACATCT+AGG | 0.435608 | 3_3:-20557612 | Msa0445780:CDS |
| CTTGTGGGATGTTGGCCATC+AGG | 0.437600 | 3_3:-20557520 | Msa0445780:intron |
| AGGACATCTAGGATCGAATC+TGG | 0.438050 | 3_3:-20557601 | Msa0445780:CDS |
| TAGGAGCATTGAAAACATAA+TGG | 0.438816 | 3_3:+20557553 | None:intergenic |
| CCTTCGAGATGTTTCGATGT+AGG | 0.439173 | 3_3:-20555132 | Msa0445780:CDS |
| TTCCGATTTCCACGGGCAAA+TGG | 0.439179 | 3_3:-20554253 | Msa0445780:CDS |
| GAAGCCGACAAAAGCATTGT+TGG | 0.443373 | 3_3:-20555210 | Msa0445780:CDS |
| CGAAACATCTCGAAGGGAAT+CGG | 0.443552 | 3_3:+20555139 | None:intergenic |
| TAGGAACTAAAACAACTTGC+GGG | 0.449908 | 3_3:-20557666 | Msa0445780:CDS |
| TTTCCACGGGCAAATGGAAC+TGG | 0.450138 | 3_3:-20554247 | Msa0445780:CDS |
| TTGTGCATCAGTATCCGAAA+TGG | 0.455448 | 3_3:-20558235 | Msa0445780:CDS |
| ACTGATGCACAAACCCCATA+TGG | 0.458213 | 3_3:+20558246 | None:intergenic |
| TCTTCTTGATGGAAAATTGA+AGG | 0.462055 | 3_3:-20553671 | Msa0445780:intron |
| GATACTTTACCGTATCCAAA+AGG | 0.462570 | 3_3:+20558184 | None:intergenic |
| TGTGCATCAGTATCCGAAAT+GGG | 0.464344 | 3_3:-20558234 | Msa0445780:CDS |
| GCAGTTTGGCTCAAAAGGAC+AGG | 0.469469 | 3_3:+20558591 | None:intergenic |
| TGCACGTTTCTGCAAGCCAT+TGG | 0.470257 | 3_3:-20553806 | Msa0445780:CDS |
| ACATGTTAACAGATAGGAAA+AGG | 0.470576 | 3_3:-20553946 | Msa0445780:intron |
| ACTGTGGAAGAAGGATCAAT+AGG | 0.471946 | 3_3:-20553736 | Msa0445780:CDS |
| TCAACACTATTTGAAGAACT+TGG | 0.472738 | 3_3:-20555671 | Msa0445780:CDS |
| AGGCAGAAAGATGGATTAAG+TGG | 0.473089 | 3_3:-20557329 | Msa0445780:CDS |
| AGATTTGTTATCGACAAAGC+TGG | 0.474221 | 3_3:-20554430 | Msa0445780:CDS |
| CGAAGCAGAGATTATGCATA+TGG | 0.475633 | 3_3:-20554314 | Msa0445780:CDS |
| TCCTATAGACAAAATCTTGT+GGG | 0.476226 | 3_3:-20557535 | Msa0445780:CDS |
| CTGAAACGATCAACTCCTCT+TGG | 0.478748 | 3_3:-20558555 | Msa0445780:CDS |
| GGCGGTGGGTAGAGATCTAA+AGG | 0.482790 | 3_3:-20556583 | Msa0445780:CDS |
| GAGATTTGACTGAAGATATC+CGG | 0.489301 | 3_3:+20556482 | None:intergenic |
| GACAAAATCTTGTGGGATGT+TGG | 0.491871 | 3_3:-20557528 | Msa0445780:CDS |
| AGCTCAACAACAATGTCAGC+AGG | 0.492313 | 3_3:-20557257 | Msa0445780:CDS |
| TCAATGCTACGACCATCAAC+AGG | 0.504194 | 3_3:+20555632 | None:intergenic |
| GAATTGCCACCAGGGAATAG+AGG | 0.510992 | 3_3:-20554220 | Msa0445780:CDS |
| GGATGTGATCATGGCATGAT+TGG | 0.512036 | 3_3:-20555704 | Msa0445780:CDS |
| CATAGCACCATCACCGATGA+TGG | 0.512307 | 3_3:+20556539 | None:intergenic |
| AACCTAACCTGGTTGAGTCT+GGG | 0.512700 | 3_3:+20558489 | None:intergenic |
| CCAGATATTTATATCGACCA+TGG | 0.516787 | 3_3:-20553302 | Msa0445780:CDS |
| GCAACAGCTAATTGCTCAGC+TGG | 0.516828 | 3_3:+20553275 | None:intergenic |
| TGCTGTCCCAAAGCCCAAAA+GGG | 0.518857 | 3_3:+20553894 | None:intergenic |
| AAACCTCATGTGATTTCGCT+AGG | 0.519301 | 3_3:+20553764 | None:intergenic |
| CAGTTTGGCTCAAAAGGACA+GGG | 0.521229 | 3_3:+20558592 | None:intergenic |
| CATCTACTCAGAGCACCAAC+TGG | 0.523518 | 3_3:+20556393 | None:intergenic |
| CTCCTATAGACAAAATCTTG+TGG | 0.525889 | 3_3:-20557536 | Msa0445780:CDS |
| ATACTTTACCGTATCCAAAA+GGG | 0.529734 | 3_3:+20558185 | None:intergenic |
| AGGTAAGGAGAAAACCATAT+GGG | 0.531352 | 3_3:-20558260 | Msa0445780:CDS |
| GGTACTCACATCATGCTTTG+CGG | 0.533753 | 3_3:-20555253 | Msa0445780:CDS |
| AACATACTTACCTTGACAAG+AGG | 0.534272 | 3_3:+20556345 | None:intergenic |
| TGGTGCTATGACTGCAGGGC+AGG | 0.534315 | 3_3:-20556526 | Msa0445780:CDS |
| GGTGATGGTGCTATGACTGC+AGG | 0.536641 | 3_3:-20556531 | Msa0445780:CDS |
| ACAACAATGTCAGCAGGGCT+AGG | 0.536842 | 3_3:-20557251 | Msa0445780:intron |
| AAGGTTGATGGATGTGATCA+TGG | 0.538673 | 3_3:-20555713 | Msa0445780:CDS |
| TAAATATCTGGAAACACCAT+TGG | 0.539217 | 3_3:+20553314 | None:intergenic |
| ATAATCTCTGCTTCGTCAGA+AGG | 0.540250 | 3_3:+20554322 | None:intergenic |
| AATAATGTGGTCACCATCAT+CGG | 0.543548 | 3_3:-20556552 | Msa0445780:CDS |
| CATACATTGAGGCAGAAAGA+TGG | 0.543587 | 3_3:-20557338 | Msa0445780:CDS |
| CTCTGAGTAGATGTCTCAGC+AGG | 0.543966 | 3_3:-20556383 | Msa0445780:CDS |
| TCTACCTAATATGGTGGTGA+TGG | 0.548667 | 3_3:-20554347 | Msa0445780:CDS |
| TGTGATCATGGCATGATTGG+TGG | 0.549795 | 3_3:-20555701 | Msa0445780:CDS |
| ATCTCGAAGGGAATCGGTGA+AGG | 0.551457 | 3_3:+20555145 | None:intergenic |
| ATACATGCTGCAATGGGAGG+TGG | 0.551655 | 3_3:-20555186 | Msa0445780:CDS |
| TAGGTAAGGAGAAAACCATA+TGG | 0.552253 | 3_3:-20558261 | Msa0445780:CDS |
| GAATAGAGGCATTCCTCTTG+AGG | 0.552272 | 3_3:-20554206 | Msa0445780:intron |
| ACCGTATCCAAAAGGGGTGT+AGG | 0.554410 | 3_3:+20558192 | None:intergenic |
| TCCATCAAGAAGACCATCAA+GGG | 0.555768 | 3_3:+20553681 | None:intergenic |
| ATACTCTAACTCACCTCAAG+AGG | 0.555952 | 3_3:+20554193 | None:intergenic |
| AGAGGAATGCCTCTATTCCC+TGG | 0.556815 | 3_3:+20554211 | None:intergenic |
| AAACGATCAACTCCTCTTGG+TGG | 0.558744 | 3_3:-20558552 | Msa0445780:CDS |
| CACGCTGTTACATTTGCCGC+AGG | 0.559010 | 3_3:-20555096 | Msa0445780:CDS |
| CTAGCTGTTTCCGATTTCCA+CGG | 0.559137 | 3_3:-20554261 | Msa0445780:CDS |
| TTCCATCAAGAAGACCATCA+AGG | 0.560580 | 3_3:+20553680 | None:intergenic |
| CGTGGAAATCGGAAACAGCT+AGG | 0.561026 | 3_3:+20554262 | None:intergenic |
| CTCCAGTTTGAGAAACACTC+TGG | 0.562966 | 3_3:+20557622 | None:intergenic |
| GCCGCAGGTCTAGCTTGTGA+AGG | 0.565344 | 3_3:-20555081 | Msa0445780:CDS |
| ATTGCTCAGCTGGTGATCCA+TGG | 0.566910 | 3_3:+20553285 | None:intergenic |
| TTGCAATCCCAGACTCAACC+AGG | 0.568095 | 3_3:-20558496 | Msa0445780:intron |
| GTGACAACATGGATTAGTAC+AGG | 0.569539 | 3_3:+20555560 | None:intergenic |
| GTTGGAATACATGCTGCAAT+GGG | 0.571998 | 3_3:-20555192 | Msa0445780:CDS |
| GAACTTGGACTTGACTACAT+TGG | 0.572725 | 3_3:-20555656 | Msa0445780:CDS |
| TGTTGGAATACATGCTGCAA+TGG | 0.575153 | 3_3:-20555193 | Msa0445780:CDS |
| TGGCTTGCTTGTCACGGTGG+CGG | 0.576309 | 3_3:-20553830 | Msa0445780:CDS |
| TCAAAAGAACCACAATGTGT+TGG | 0.576620 | 3_3:+20554388 | None:intergenic |
| ACTGGTGTAGAATTGCCACC+AGG | 0.577521 | 3_3:-20554229 | Msa0445780:CDS |
| TTTGAGGCAATGAATAATGC+CGG | 0.578565 | 3_3:-20556501 | Msa0445780:CDS |
| GTCATAAGCTCTCTGCAAGA+AGG | 0.579687 | 3_3:+20555029 | None:intergenic |
| CGAATGAGCGAACGGTCCAA+TGG | 0.582651 | 3_3:+20553790 | None:intergenic |
| TATCCACATAAAATACTCAC+TGG | 0.584714 | 3_3:-20557377 | Msa0445780:CDS |
| GGCAGAAAGATGGATTAAGT+GGG | 0.585018 | 3_3:-20557328 | Msa0445780:CDS |
| AGCATTGAAAACATAATGGA+GGG | 0.588745 | 3_3:+20557557 | None:intergenic |
| TAGCTGTTTCCGATTTCCAC+GGG | 0.589014 | 3_3:-20554260 | Msa0445780:CDS |
| GAGCATTGAAAACATAATGG+AGG | 0.590912 | 3_3:+20557556 | None:intergenic |
| ATCAGACAAACCTCTTGTCA+AGG | 0.591557 | 3_3:-20556355 | Msa0445780:intron |
| GAGTACCGGTGTGGGAGCCT+TGG | 0.593110 | 3_3:+20555269 | None:intergenic |
| CTTGCAGAGAGCTTATGACC+AGG | 0.594809 | 3_3:-20555025 | Msa0445780:intron |
| TTCGAAGGTGGTGCATGATG+TGG | 0.595656 | 3_3:-20554473 | Msa0445780:intron |
| TATTATCCAGTGGAGGCCAA+TGG | 0.603817 | 3_3:-20553330 | Msa0445780:intron |
| GTGGTCACCATCATCGGTGA+TGG | 0.604425 | 3_3:-20556546 | Msa0445780:CDS |
| GCCTCAATATTGCAGCAACA+TGG | 0.604435 | 3_3:-20553850 | Msa0445780:CDS |
| GCGGTGGGTAGAGATCTAAA+GGG | 0.604452 | 3_3:-20556582 | Msa0445780:CDS |
| GTAGGAACTAAAACAACTTG+CGG | 0.604690 | 3_3:-20557667 | Msa0445780:intron |
| GGACATCTAGGATCGAATCT+GGG | 0.606948 | 3_3:-20557600 | Msa0445780:CDS |
| GCCATGTTGCTGCAATATTG+AGG | 0.614726 | 3_3:+20553849 | None:intergenic |
| ACAAAGAAAGGAGGCACTAG+AGG | 0.615250 | 3_3:-20553204 | Msa0445780:CDS |
| GCAAAGCATGATGTGAGTAC+CGG | 0.615355 | 3_3:+20555255 | None:intergenic |
| GGAATAAGATGCATACATTG+AGG | 0.616684 | 3_3:-20557349 | Msa0445780:CDS |
| GCAACATGGCTTGCTTGTCA+CGG | 0.617203 | 3_3:-20553836 | Msa0445780:CDS |
| CTACATCGAAACATCTCGAA+GGG | 0.619120 | 3_3:+20555133 | None:intergenic |
| GTGAAGGAAGTGATTCATGC+CGG | 0.621432 | 3_3:+20555161 | None:intergenic |
| GCTCACCGAAGGCGAAAGAG+TGG | 0.621613 | 3_3:-20553917 | Msa0445780:CDS |
| GAAGATGGTCCAACACATTG+TGG | 0.623107 | 3_3:-20554397 | Msa0445780:CDS |
| ACAAGTATCGCTACCTACCG+CGG | 0.628279 | 3_3:-20556436 | Msa0445780:CDS |
| GTGCATCAGTATCCGAAATG+GGG | 0.629009 | 3_3:-20558233 | Msa0445780:CDS |
| TACTTTACCGTATCCAAAAG+GGG | 0.632931 | 3_3:+20558186 | None:intergenic |
| GTGGAAGAAGGATCAATAGG+AGG | 0.634607 | 3_3:-20553733 | Msa0445780:CDS |
| AAAGGAAGAATGCTCACCGA+AGG | 0.635301 | 3_3:-20553928 | Msa0445780:CDS |
| AGCAGAGATTATGCATATGG+TGG | 0.641975 | 3_3:-20554311 | Msa0445780:CDS |
| TGCATCAGTATCCGAAATGG+GGG | 0.642842 | 3_3:-20558232 | Msa0445780:CDS |
| GGACCATGAAGGTCCGCGGT+AGG | 0.644302 | 3_3:+20556423 | None:intergenic |
| ACACCAGTTCCATTTGCCCG+TGG | 0.651582 | 3_3:+20554244 | None:intergenic |
| CTGGTGTAGAATTGCCACCA+GGG | 0.652032 | 3_3:-20554228 | Msa0445780:CDS |
| CGGTGGGTAGAGATCTAAAG+GGG | 0.653145 | 3_3:-20556581 | Msa0445780:CDS |
| GGTAAGGAGAAAACCATATG+GGG | 0.656189 | 3_3:-20558259 | Msa0445780:CDS |
| CATGGTCCAATACCACCAGT+TGG | 0.657891 | 3_3:-20556408 | Msa0445780:CDS |
| CATGATGTGAGTACCGGTGT+GGG | 0.658913 | 3_3:+20555261 | None:intergenic |
| CTAGGTTGCGAATGAGCGAA+CGG | 0.661008 | 3_3:+20553782 | None:intergenic |
| CAACCTAGCGAAATCACATG+AGG | 0.664346 | 3_3:-20553767 | Msa0445780:CDS |
| CTACTCAGAGCACCAACTGG+TGG | 0.665084 | 3_3:+20556396 | None:intergenic |
| CAAGACCAAGGCTCCCACAC+CGG | 0.667838 | 3_3:-20555274 | Msa0445780:CDS |
| CCTACATCGAAACATCTCGA+AGG | 0.669459 | 3_3:+20555132 | None:intergenic |
| CAGAGTGTTTCTCAAACTGG+AGG | 0.670619 | 3_3:-20557621 | Msa0445780:CDS |
| ACATGGCTTGCTTGTCACGG+TGG | 0.671087 | 3_3:-20553833 | Msa0445780:CDS |
| GCTCAACAACAATGTCAGCA+GGG | 0.672469 | 3_3:-20557256 | Msa0445780:CDS |
| AATTCTTGGACAAAGAAAGG+AGG | 0.672979 | 3_3:-20553213 | Msa0445780:CDS |
| TGGAAAACAGTTCAAGACCA+AGG | 0.680209 | 3_3:-20555286 | Msa0445780:CDS |
| ACCTTCACAAGCTAGACCTG+CGG | 0.682356 | 3_3:+20555080 | None:intergenic |
| GTGATGGTGCTATGACTGCA+GGG | 0.687716 | 3_3:-20556530 | Msa0445780:CDS |
| GGAATACATGCTGCAATGGG+AGG | 0.692170 | 3_3:-20555189 | Msa0445780:CDS |
| CTGGTGGTATTGGACCATGA+AGG | 0.697503 | 3_3:+20556412 | None:intergenic |
| GGCATGTCTACCTAATATGG+TGG | 0.702209 | 3_3:-20554353 | Msa0445780:CDS |
| GCATGATGTGAGTACCGGTG+TGG | 0.705105 | 3_3:+20555260 | None:intergenic |
| GGAATGCCTCTATTCCCTGG+TGG | 0.706633 | 3_3:+20554214 | None:intergenic |
| TATTGGACCATGAAGGTCCG+CGG | 0.710162 | 3_3:+20556419 | None:intergenic |
| GGTGGTTCTAACTATCAATG+GGG | 0.716011 | 3_3:-20558534 | Msa0445780:CDS |
| TGATAGTTAGAACCACCAAG+AGG | 0.716360 | 3_3:+20558540 | None:intergenic |
| AAAGCAGCAGACAAGTACCA+TGG | 0.719356 | 3_3:-20555506 | Msa0445780:intron |
| GGTGGGTAGAGATCTAAAGG+GGG | 0.788838 | 3_3:-20556580 | Msa0445780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTGTTAAAAAAAT+AGG | + | chr3_3:20553954-20553973 | None:intergenic | 10.0% |
| !!! | TATTTTATTTATATAAGCTA+TGG | + | chr3_3:20554631-20554650 | None:intergenic | 10.0% |
| !!! | AATATAGTCAAATATTTTTT+TGG | + | chr3_3:20555014-20555033 | None:intergenic | 10.0% |
| !!! | ACTTTTTAAAATTTCAAATT+TGG | - | chr3_3:20555816-20555835 | Msa0445780:intron | 10.0% |
| !!! | ATGAGAATTTTTAAATATTT+GGG | + | chr3_3:20555842-20555861 | None:intergenic | 10.0% |
| !!! | AATGAGAATTTTTAAATATT+TGG | + | chr3_3:20555843-20555862 | None:intergenic | 10.0% |
| !! | AATACTATGTATAATATATA+AGG | - | chr3_3:20556820-20556839 | Msa0445780:intron | 10.0% |
| !!! | TGTATAATTTTTTTTTGAAA+AGG | - | chr3_3:20556852-20556871 | Msa0445780:intron | 10.0% |
| !! | AACAAAATTGAGTATAATAT+TGG | + | chr3_3:20553912-20553931 | None:intergenic | 15.0% |
| !!! | ATATTATACTCAATTTTGTT+TGG | - | chr3_3:20553912-20553931 | Msa0445780:CDS | 15.0% |
| !! | TGTAGTTAAAAATTCATAAT+TGG | + | chr3_3:20554036-20554055 | None:intergenic | 15.0% |
| !! | TCATGTAATAAAATTGTTAA+TGG | - | chr3_3:20554070-20554089 | Msa0445780:intron | 15.0% |
| !!! | TAATAAAATTGTTAATGGAT+TGG | - | chr3_3:20554075-20554094 | Msa0445780:intron | 15.0% |
| !! | TTTGAAAAAATCTATGTTAT+TGG | - | chr3_3:20554351-20554370 | Msa0445780:CDS | 15.0% |
| !!! | TTCTGATTTTATTTTTCTTT+TGG | - | chr3_3:20554945-20554964 | Msa0445780:intron | 15.0% |
| !! | ACATAAAAATTAGAATACTT+GGG | + | chr3_3:20554989-20555008 | None:intergenic | 15.0% |
| !! | TACATAAAAATTAGAATACT+TGG | + | chr3_3:20554990-20555009 | None:intergenic | 15.0% |
| !!! | CATAATTTGAAACTATAATA+AGG | + | chr3_3:20555662-20555681 | None:intergenic | 15.0% |
| !!! | TGCAATTTCTAAAAATATTA+GGG | + | chr3_3:20555755-20555774 | None:intergenic | 15.0% |
| !!! | TTGCAATTTCTAAAAATATT+AGG | + | chr3_3:20555756-20555775 | None:intergenic | 15.0% |
| !!! | TTGAAATTTTAAAAAGTTGA+TGG | + | chr3_3:20555813-20555832 | None:intergenic | 15.0% |
| !! | TTATAAAGTGTAAAAGTTAT+GGG | + | chr3_3:20555901-20555920 | None:intergenic | 15.0% |
| !! | TTTATAAAGTGTAAAAGTTA+TGG | + | chr3_3:20555902-20555921 | None:intergenic | 15.0% |
| !!! | TTTAGGAAAATTAGAATTTT+AGG | + | chr3_3:20556019-20556038 | None:intergenic | 15.0% |
| !! | TTTAATTATACATATCTTTC+GGG | + | chr3_3:20557205-20557224 | None:intergenic | 15.0% |
| !! | CTTTAATTATACATATCTTT+CGG | + | chr3_3:20557206-20557225 | None:intergenic | 15.0% |
| !! | AAGTGAATTTATTCTAATAA+TGG | + | chr3_3:20557754-20557773 | None:intergenic | 15.0% |
| !!! | TATATTTAAACCAACTTGTT+TGG | - | chr3_3:20553371-20553390 | Msa0445780:intron | 20.0% |
| !! | AAAAAAAAAACCAAACAAGT+TGG | + | chr3_3:20553384-20553403 | None:intergenic | 20.0% |
| !! | ATAAGAATTTCACTATAAAC+TGG | - | chr3_3:20553728-20553747 | Msa0445780:CDS | 20.0% |
| !! | TAATGAACATGTAATGAATA+TGG | - | chr3_3:20553759-20553778 | Msa0445780:CDS | 20.0% |
| !! | AAAAAAATAGGCAATTTCTA+CGG | + | chr3_3:20553942-20553961 | None:intergenic | 20.0% |
| !! | CAAAAAAATGTGTAAAAACA+TGG | - | chr3_3:20553964-20553983 | Msa0445780:intron | 20.0% |
| !! | TCTATATCATTTATTGATGT+AGG | - | chr3_3:20554126-20554145 | Msa0445780:intron | 20.0% |
| !! | TATATTACACTTCAATTTGA+AGG | - | chr3_3:20554821-20554840 | Msa0445780:intron | 20.0% |
| !! | AGTGTTTATTATTTACCAAT+AGG | - | chr3_3:20554905-20554924 | Msa0445780:intron | 20.0% |
| !!! | ATATAGCTTTTGCAAAATTA+CGG | + | chr3_3:20555531-20555550 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAAAGATAAAGT+TGG | - | chr3_3:20555635-20555654 | Msa0445780:CDS | 20.0% |
| !!! | ATGTTTTAAAACATACACAT+TGG | - | chr3_3:20555697-20555716 | Msa0445780:CDS | 20.0% |
| !!! | ATGAGGTAATTGAAAATTTT+AGG | + | chr3_3:20556036-20556055 | None:intergenic | 20.0% |
| !! | TAATAAGTGGTGAATTTATT+AGG | + | chr3_3:20556379-20556398 | None:intergenic | 20.0% |
| !! | TTAATTATACATATCTTTCG+GGG | + | chr3_3:20557204-20557223 | None:intergenic | 20.0% |
| !! | CTTTCTAATAATCTTCATAA+GGG | + | chr3_3:20557670-20557689 | None:intergenic | 20.0% |
| !! | TCTTTCTAATAATCTTCATA+AGG | + | chr3_3:20557671-20557690 | None:intergenic | 20.0% |
| !! | ATCTAATGCAATTATTTAGT+GGG | + | chr3_3:20557781-20557800 | None:intergenic | 20.0% |
| !! | AATCTAATGCAATTATTTAG+TGG | + | chr3_3:20557782-20557801 | None:intergenic | 20.0% |
| !!! | ATTTCTCTTTAAAACAGTTT+TGG | - | chr3_3:20557815-20557834 | Msa0445780:intron | 20.0% |
| !!! | TAATTTTTTTTCCTCATTGA+CGG | - | chr3_3:20558344-20558363 | Msa0445780:intron | 20.0% |
| !! | ATTAAACCAACTTGTTTGTT+TGG | - | chr3_3:20553438-20553457 | Msa0445780:intron | 25.0% |
| ! | AAAAAACCAAACAAACAAGT+TGG | + | chr3_3:20553447-20553466 | None:intergenic | 25.0% |
| ! | TTCCATCATTAAAATTGAGA+TGG | - | chr3_3:20553483-20553502 | Msa0445780:intron | 25.0% |
| ! | TCCATCATTAAAATTGAGAT+GGG | - | chr3_3:20553484-20553503 | Msa0445780:intron | 25.0% |
| ! | GTCTAATTATGAATGTATGT+AGG | - | chr3_3:20553531-20553550 | Msa0445780:intron | 25.0% |
| ! | ATTATGAATGTATGTAGGTA+AGG | - | chr3_3:20553536-20553555 | Msa0445780:intron | 25.0% |
| ! | TCTAACGATTAAGGTAAAAT+AGG | - | chr3_3:20553666-20553685 | Msa0445780:intron | 25.0% |
| ! | TTTCACTATAAACTGGTTAA+TGG | - | chr3_3:20553735-20553754 | Msa0445780:CDS | 25.0% |
| ! | TGTATATTTGAACACTTGAA+AGG | + | chr3_3:20553806-20553825 | None:intergenic | 25.0% |
| ! | AATATTGTGCTCAAATACTA+GGG | - | chr3_3:20553873-20553892 | Msa0445780:CDS | 25.0% |
| ! | TAAGATATCCCATATTATGA+TGG | - | chr3_3:20553997-20554016 | Msa0445780:intron | 25.0% |
| !! | AATTCATAATTGGCTCATAA+GGG | + | chr3_3:20554026-20554045 | None:intergenic | 25.0% |
| !! | AAATTCATAATTGGCTCATA+AGG | + | chr3_3:20554027-20554046 | None:intergenic | 25.0% |
| !!! | TTAGTACTAGTTGATTTTCT+AGG | - | chr3_3:20554377-20554396 | Msa0445780:CDS | 25.0% |
| !! | GTCTCTAAATATTTTGTCTT+GGG | + | chr3_3:20554873-20554892 | None:intergenic | 25.0% |
| !! | TGTCTCTAAATATTTTGTCT+TGG | + | chr3_3:20554874-20554893 | None:intergenic | 25.0% |
| ! | ACTGAAAAGATATTTCCTAT+TGG | + | chr3_3:20554923-20554942 | None:intergenic | 25.0% |
| ! | GCTTTATATTAATGCACAAT+TGG | - | chr3_3:20555154-20555173 | Msa0445780:CDS | 25.0% |
| ! | ACATCGAAGAAATTCATTTA+TGG | + | chr3_3:20555555-20555574 | None:intergenic | 25.0% |
| ! | TCGATGTAAAATTTACTGTT+TGG | - | chr3_3:20555568-20555587 | Msa0445780:CDS | 25.0% |
| ! | TACTGTTTGGATGATAAATT+TGG | - | chr3_3:20555581-20555600 | Msa0445780:CDS | 25.0% |
| !! | ATTCAATCAAAGCATTTGAA+TGG | - | chr3_3:20555993-20556012 | Msa0445780:intron | 25.0% |
| ! | ATTGAATGAGCAATAATAAG+TGG | + | chr3_3:20556392-20556411 | None:intergenic | 25.0% |
| ! | TAGTATTAAATTACACTACC+TGG | + | chr3_3:20556807-20556826 | None:intergenic | 25.0% |
| ! | TAATTATACATATCTTTCGG+GGG | + | chr3_3:20557203-20557222 | None:intergenic | 25.0% |
| ! | TGTTGTACAATATGCTATAT+GGG | + | chr3_3:20557275-20557294 | None:intergenic | 25.0% |
| ! | ATGTTGTACAATATGCTATA+TGG | + | chr3_3:20557276-20557295 | None:intergenic | 25.0% |
| !!! | TTCTTTTGATGTCACTTATA+TGG | - | chr3_3:20557437-20557456 | Msa0445780:intron | 25.0% |
| !! | TGTTGAACTTTTTACATTGA+CGG | + | chr3_3:20558223-20558242 | None:intergenic | 25.0% |
| !! | GATCATATTGTTTTGCAGTT+TGG | + | chr3_3:20553237-20553256 | None:intergenic | 30.0% |
| TTCAACAAAAAAACCTAACC+TGG | + | chr3_3:20553336-20553355 | None:intergenic | 30.0% | |
| !! | TCCCATCTCAATTTTAATGA+TGG | + | chr3_3:20553488-20553507 | None:intergenic | 30.0% |
| ATACTTTACCGTATCCAAAA+GGG | + | chr3_3:20553629-20553648 | None:intergenic | 30.0% | |
| TATGAAGACTCTAACGATTA+AGG | - | chr3_3:20553657-20553676 | Msa0445780:intron | 30.0% | |
| CAATATTGTGCTCAAATACT+AGG | - | chr3_3:20553872-20553891 | Msa0445780:CDS | 30.0% | |
| ATATTGTGCTCAAATACTAG+GGG | - | chr3_3:20553874-20553893 | Msa0445780:CDS | 30.0% | |
| ! | ATTCATAATTGGCTCATAAG+GGG | + | chr3_3:20554025-20554044 | None:intergenic | 30.0% |
| ! | AGCATTGAAAACATAATGGA+GGG | + | chr3_3:20554257-20554276 | None:intergenic | 30.0% |
| !! | TAGGAGCATTGAAAACATAA+TGG | + | chr3_3:20554261-20554280 | None:intergenic | 30.0% |
| TCCTATAGACAAAATCTTGT+GGG | - | chr3_3:20554276-20554295 | Msa0445780:CDS | 30.0% | |
| TATCCACATAAAATACTCAC+TGG | - | chr3_3:20554434-20554453 | Msa0445780:CDS | 30.0% | |
| ATAAAATACTCACTGGTAGA+AGG | - | chr3_3:20554441-20554460 | Msa0445780:CDS | 30.0% | |
| !! | GAGAGTGAATTTGATAGTTT+TGG | - | chr3_3:20554521-20554540 | Msa0445780:intron | 30.0% |
| TCACGAAAGCTTAAATTGTT+AGG | - | chr3_3:20555079-20555098 | Msa0445780:CDS | 30.0% | |
| ! | TGACATTTTACTCCAAAAAC+AGG | - | chr3_3:20555202-20555221 | Msa0445780:CDS | 30.0% |
| ! | TTTTACTCCAAAAACAGGAA+TGG | - | chr3_3:20555207-20555226 | Msa0445780:CDS | 30.0% |
| GTGTAAAAGTTATGGGATAA+AGG | + | chr3_3:20555894-20555913 | None:intergenic | 30.0% | |
| CTTCATTCTTAAACTTTGCT+CGG | + | chr3_3:20555930-20555949 | None:intergenic | 30.0% | |
| TCAACACTATTTGAAGAACT+TGG | - | chr3_3:20556140-20556159 | Msa0445780:intron | 30.0% | |
| !! | ACTCTTAACTTGTTTGAGAA+TGG | + | chr3_3:20556216-20556235 | None:intergenic | 30.0% |
| ! | TATTCCAACAATGCTTTTGT+CGG | + | chr3_3:20556608-20556627 | None:intergenic | 30.0% |
| GGGAAGAAAAAAATACAACA+AGG | - | chr3_3:20556926-20556945 | Msa0445780:intron | 30.0% | |
| !!! | ATTGGTTTTGGGTTGTTTTT+TGG | + | chr3_3:20556980-20556999 | None:intergenic | 30.0% |
| AAACAACCCAAAACCAATAA+AGG | - | chr3_3:20556982-20557001 | Msa0445780:intron | 30.0% | |
| TACAATATGCTATATGGGAT+CGG | + | chr3_3:20557270-20557289 | None:intergenic | 30.0% | |
| TATATTTCATGTCCATTCGA+AGG | - | chr3_3:20557323-20557342 | Msa0445780:CDS | 30.0% | |
| TTGTCGATAACAAATCTTAC+TGG | + | chr3_3:20557378-20557397 | None:intergenic | 30.0% | |
| ! | ATAAAGTATTCGTGCAGAAA+TGG | + | chr3_3:20557731-20557750 | None:intergenic | 30.0% |
| !! | GTTTTGACATGTTAACAGAT+AGG | - | chr3_3:20557859-20557878 | Msa0445780:intron | 30.0% |
| ACATGTTAACAGATAGGAAA+AGG | - | chr3_3:20557865-20557884 | Msa0445780:intron | 30.0% | |
| TCTTCTTGATGGAAAATTGA+AGG | - | chr3_3:20558140-20558159 | Msa0445780:intron | 30.0% | |
| TTGTGTTTCATATTATCCAG+TGG | - | chr3_3:20558471-20558490 | Msa0445780:intron | 30.0% | |
| TAAATATCTGGAAACACCAT+TGG | + | chr3_3:20558500-20558519 | None:intergenic | 30.0% | |
| ! | GCAACAGTTTTCAAAATTCT+TGG | - | chr3_3:20558584-20558603 | Msa0445780:CDS | 30.0% |
| CAAAATTCTTGGACAAAGAA+AGG | - | chr3_3:20558595-20558614 | Msa0445780:CDS | 30.0% | |
| !! | TTGGTGGTTCTAACTATCAA+TGG | - | chr3_3:20553275-20553294 | Msa0445780:CDS | 35.0% |
| !! | TGGTGGTTCTAACTATCAAT+GGG | - | chr3_3:20553276-20553295 | Msa0445780:CDS | 35.0% |
| TAGGTAAGGAGAAAACCATA+TGG | - | chr3_3:20553550-20553569 | Msa0445780:intron | 35.0% | |
| AGGTAAGGAGAAAACCATAT+GGG | - | chr3_3:20553551-20553570 | Msa0445780:intron | 35.0% | |
| TACTTTACCGTATCCAAAAG+GGG | + | chr3_3:20553628-20553647 | None:intergenic | 35.0% | |
| GATACTTTACCGTATCCAAA+AGG | + | chr3_3:20553630-20553649 | None:intergenic | 35.0% | |
| GTTAGAGTCTTCATATCTTC+GGG | + | chr3_3:20553652-20553671 | None:intergenic | 35.0% | |
| CGTTAGAGTCTTCATATCTT+CGG | + | chr3_3:20553653-20553672 | None:intergenic | 35.0% | |
| GAACATGTAATGAATATGGC+AGG | - | chr3_3:20553763-20553782 | Msa0445780:CDS | 35.0% | |
| !! | AAGGGGTACCATCATAATAT+GGG | + | chr3_3:20554008-20554027 | None:intergenic | 35.0% |
| !! | TAAGGGGTACCATCATAATA+TGG | + | chr3_3:20554009-20554028 | None:intergenic | 35.0% |
| GTAGGAACTAAAACAACTTG+CGG | - | chr3_3:20554144-20554163 | Msa0445780:intron | 35.0% | |
| TAGGAACTAAAACAACTTGC+GGG | - | chr3_3:20554145-20554164 | Msa0445780:intron | 35.0% | |
| !! | GAGCATTGAAAACATAATGG+AGG | + | chr3_3:20554258-20554277 | None:intergenic | 35.0% |
| CTCCTATAGACAAAATCTTG+TGG | - | chr3_3:20554275-20554294 | Msa0445780:CDS | 35.0% | |
| ! | TCCCACAAGATTTTGTCTAT+AGG | + | chr3_3:20554280-20554299 | None:intergenic | 35.0% |
| ! | TAGGAGTATAATCAACCTGA+TGG | + | chr3_3:20554309-20554328 | None:intergenic | 35.0% |
| ! | CTACCAGTGAGTATTTTATG+TGG | + | chr3_3:20554440-20554459 | None:intergenic | 35.0% |
| GGAATAAGATGCATACATTG+AGG | - | chr3_3:20554462-20554481 | Msa0445780:CDS | 35.0% | |
| !!! | GAATTTGATAGTTTTGGCAC+TGG | - | chr3_3:20554527-20554546 | Msa0445780:intron | 35.0% |
| !!! | GTTTCTAGCCAGAAATTTTC+AGG | - | chr3_3:20554605-20554624 | Msa0445780:intron | 35.0% |
| AATTTAAGCTTTCGTGAGAG+AGG | + | chr3_3:20555076-20555095 | None:intergenic | 35.0% | |
| TGCACAATTGGATTTGTGAT+CGG | - | chr3_3:20555166-20555185 | Msa0445780:CDS | 35.0% | |
| AATAATGTGGTCACCATCAT+CGG | - | chr3_3:20555259-20555278 | Msa0445780:CDS | 35.0% | |
| ! | TTTGAGGCAATGAATAATGC+CGG | - | chr3_3:20555310-20555329 | Msa0445780:CDS | 35.0% |
| GAGATTTGACTGAAGATATC+CGG | + | chr3_3:20555332-20555351 | None:intergenic | 35.0% | |
| AACATACTTACCTTGACAAG+AGG | + | chr3_3:20555469-20555488 | None:intergenic | 35.0% | |
| TCTTGTCAAGGTAAGTATGT+TGG | - | chr3_3:20555468-20555487 | Msa0445780:intron | 35.0% | |
| TTACCTCATTCAAGTACACT+CGG | - | chr3_3:20556047-20556066 | Msa0445780:intron | 35.0% | |
| GTGAATATTGCTAAGGTTGA+TGG | - | chr3_3:20556086-20556105 | Msa0445780:intron | 35.0% | |
| GTTAAGAGTCCTAAGAAAAC+TGG | - | chr3_3:20556227-20556246 | Msa0445780:intron | 35.0% | |
| ATCCATGTTGTCACTGAAAA+AGG | - | chr3_3:20556260-20556279 | Msa0445780:intron | 35.0% | |
| TGACTTTCTACTTTCATGAC+AGG | - | chr3_3:20556452-20556471 | Msa0445780:CDS | 35.0% | |
| !!! | CTAACATGGTTTAGTTTTGC+AGG | - | chr3_3:20556478-20556497 | Msa0445780:CDS | 35.0% |
| GACGAGTAAATTGCACAAAA+AGG | + | chr3_3:20556763-20556782 | None:intergenic | 35.0% | |
| !!! | TTTTGGGTTGTTTTTTGGTG+TGG | + | chr3_3:20556975-20556994 | None:intergenic | 35.0% |
| !!! | TTTTGGGTTTTTCGGTTTTG+AGG | + | chr3_3:20557059-20557078 | None:intergenic | 35.0% |
| AAACCGAAAAACCCAAAAAC+AGG | - | chr3_3:20557061-20557080 | Msa0445780:intron | 35.0% | |
| AGTGTCTTTCAGTTCTGTTT+GGG | + | chr3_3:20557180-20557199 | None:intergenic | 35.0% | |
| ! | AAAGCTCATTTCTTTTCACG+TGG | - | chr3_3:20557222-20557241 | Msa0445780:intron | 35.0% |
| ! | AAGCTCATTTCTTTTCACGT+GGG | - | chr3_3:20557223-20557242 | Msa0445780:intron | 35.0% |
| ACAATATGCTATATGGGATC+GGG | + | chr3_3:20557269-20557288 | None:intergenic | 35.0% | |
| !! | AGATTTGTTATCGACAAAGC+TGG | - | chr3_3:20557381-20557400 | Msa0445780:CDS | 35.0% |
| TCAAAAGAACCACAATGTGT+TGG | + | chr3_3:20557426-20557445 | None:intergenic | 35.0% | |
| TATGGCATGTCTACCTAATA+TGG | - | chr3_3:20557455-20557474 | Msa0445780:intron | 35.0% | |
| TGCATTAGATTGTGTATTGC+TGG | - | chr3_3:20557791-20557810 | Msa0445780:intron | 35.0% | |
| CTAAAGTCGCACAAATGATT+GGG | + | chr3_3:20558262-20558281 | None:intergenic | 35.0% | |
| ! | TCTAAAGTCGCACAAATGAT+TGG | + | chr3_3:20558263-20558282 | None:intergenic | 35.0% |
| !!! | TTTTTTTTCCTCATTGACGG+CGG | - | chr3_3:20558347-20558366 | Msa0445780:intron | 35.0% |
| TGTTTCATATTATCCAGTGG+AGG | - | chr3_3:20558474-20558493 | Msa0445780:intron | 35.0% | |
| CCATGGTCGATATAAATATC+TGG | + | chr3_3:20558512-20558531 | None:intergenic | 35.0% | |
| CCAGATATTTATATCGACCA+TGG | - | chr3_3:20558509-20558528 | Msa0445780:CDS | 35.0% | |
| ! | AAAACTGTTGCTGCTATTTG+AGG | + | chr3_3:20558575-20558594 | None:intergenic | 35.0% |
| AATTCTTGGACAAAGAAAGG+AGG | - | chr3_3:20558598-20558617 | Msa0445780:CDS | 35.0% | |
| !! | GTTTTGCAGTTTGGCTCAAA+AGG | + | chr3_3:20553228-20553247 | None:intergenic | 40.0% |
| TGATAGTTAGAACCACCAAG+AGG | + | chr3_3:20553274-20553293 | None:intergenic | 40.0% | |
| !! | GGTGGTTCTAACTATCAATG+GGG | - | chr3_3:20553277-20553296 | Msa0445780:CDS | 40.0% |
| GGTAAGGAGAAAACCATATG+GGG | - | chr3_3:20553552-20553571 | Msa0445780:intron | 40.0% | |
| TTGTGCATCAGTATCCGAAA+TGG | - | chr3_3:20553576-20553595 | Msa0445780:intron | 40.0% | |
| TGTGCATCAGTATCCGAAAT+GGG | - | chr3_3:20553577-20553596 | Msa0445780:intron | 40.0% | |
| ! | ATCCAGAGTGTTTCTCAAAC+TGG | - | chr3_3:20554187-20554206 | Msa0445780:intron | 40.0% |
| GACAAAATCTTGTGGGATGT+TGG | - | chr3_3:20554283-20554302 | Msa0445780:CDS | 40.0% | |
| ! | CTCTCTTGTGTGAATTTTGC+AGG | - | chr3_3:20554409-20554428 | Msa0445780:CDS | 40.0% |
| CATACATTGAGGCAGAAAGA+TGG | - | chr3_3:20554473-20554492 | Msa0445780:intron | 40.0% | |
| !! | AGGCAGAAAGATGGATTAAG+TGG | - | chr3_3:20554482-20554501 | Msa0445780:intron | 40.0% |
| !! | GGCAGAAAGATGGATTAAGT+GGG | - | chr3_3:20554483-20554502 | Msa0445780:intron | 40.0% |
| AGCTATGGCCTGAAAATTTC+TGG | + | chr3_3:20554616-20554635 | None:intergenic | 40.0% | |
| TACTCCAAAAACAGGAATGG+CGG | - | chr3_3:20555210-20555229 | Msa0445780:CDS | 40.0% | |
| AAAGGGGGACAACAATAATG+TGG | - | chr3_3:20555246-20555265 | Msa0445780:CDS | 40.0% | |
| ATCAGACAAACCTCTTGTCA+AGG | - | chr3_3:20555456-20555475 | Msa0445780:intron | 40.0% | |
| ! | GGTAAGTATGTTGGCTATCA+TGG | - | chr3_3:20555477-20555496 | Msa0445780:intron | 40.0% |
| TTTCCGAGTGTACTTGAATG+AGG | + | chr3_3:20556053-20556072 | None:intergenic | 40.0% | |
| CACAGCTGTGAATATTGCTA+AGG | - | chr3_3:20556079-20556098 | Msa0445780:intron | 40.0% | |
| !! | AAGGTTGATGGATGTGATCA+TGG | - | chr3_3:20556098-20556117 | Msa0445780:intron | 40.0% |
| GAACTTGGACTTGACTACAT+TGG | - | chr3_3:20556155-20556174 | Msa0445780:intron | 40.0% | |
| ! | AGTACAGGACCAGTTTTCTT+AGG | + | chr3_3:20556239-20556258 | None:intergenic | 40.0% |
| !! | GTGACAACATGGATTAGTAC+AGG | + | chr3_3:20556254-20556273 | None:intergenic | 40.0% |
| !!! | TGCCTTTTTCAGTGACAACA+TGG | + | chr3_3:20556265-20556284 | None:intergenic | 40.0% |
| ! | GTTGTCACTGAAAAAGGCAT+AGG | - | chr3_3:20556266-20556285 | Msa0445780:intron | 40.0% |
| TTGTAATGCCTGTTGTACCA+TGG | + | chr3_3:20556325-20556344 | None:intergenic | 40.0% | |
| TTCATGACAGGCATCTAACA+TGG | - | chr3_3:20556464-20556483 | Msa0445780:CDS | 40.0% | |
| ! | TTGAACTGTTTTCCAGTTGC+AGG | + | chr3_3:20556520-20556539 | None:intergenic | 40.0% |
| TGGAAAACAGTTCAAGACCA+AGG | - | chr3_3:20556525-20556544 | Msa0445780:CDS | 40.0% | |
| TGTTGGAATACATGCTGCAA+TGG | - | chr3_3:20556618-20556637 | Msa0445780:intron | 40.0% | |
| GTTGGAATACATGCTGCAAT+GGG | - | chr3_3:20556619-20556638 | Msa0445780:intron | 40.0% | |
| CTACATCGAAACATCTCGAA+GGG | + | chr3_3:20556681-20556700 | None:intergenic | 40.0% | |
| CTTCGAGATGTTTCGATGTA+GGG | - | chr3_3:20556680-20556699 | Msa0445780:intron | 40.0% | |
| !! | AACAAGGTGCCGCATATATA+CGG | - | chr3_3:20556942-20556961 | Msa0445780:intron | 40.0% |
| !!! | TCGAGGCCTTTATTGGTTTT+GGG | + | chr3_3:20556991-20557010 | None:intergenic | 40.0% |
| !!! | TTCGAGGCCTTTATTGGTTT+TGG | + | chr3_3:20556992-20557011 | None:intergenic | 40.0% |
| !!! | CAGCCTGTTTTTGGGTTTTT+CGG | + | chr3_3:20557067-20557086 | None:intergenic | 40.0% |
| !! | GTTAGGTTGTGTTGCTGTTT+CGG | + | chr3_3:20557140-20557159 | None:intergenic | 40.0% |
| GAGTGTCTTTCAGTTCTGTT+TGG | + | chr3_3:20557181-20557200 | None:intergenic | 40.0% | |
| ATTTCATGTCCATTCGAAGG+TGG | - | chr3_3:20557326-20557345 | Msa0445780:CDS | 40.0% | |
| ATCGACAAAGCTGGATTTGT+TGG | - | chr3_3:20557390-20557409 | Msa0445780:intron | 40.0% | |
| ! | TCTACCTAATATGGTGGTGA+TGG | - | chr3_3:20557464-20557483 | Msa0445780:intron | 40.0% |
| ATAATCTCTGCTTCGTCAGA+AGG | + | chr3_3:20557492-20557511 | None:intergenic | 40.0% | |
| CGAAGCAGAGATTATGCATA+TGG | - | chr3_3:20557497-20557516 | Msa0445780:intron | 40.0% | |
| AGCAGAGATTATGCATATGG+TGG | - | chr3_3:20557500-20557519 | Msa0445780:intron | 40.0% | |
| ATACTCTAACTCACCTCAAG+AGG | + | chr3_3:20557621-20557640 | None:intergenic | 40.0% | |
| AAACCTCATGTGATTTCGCT+AGG | + | chr3_3:20558050-20558069 | None:intergenic | 40.0% | |
| !! | ACATGAGGTTTTGATCACTG+TGG | - | chr3_3:20558059-20558078 | Msa0445780:intron | 40.0% |
| !! | GTTTTGATCACTGTGGAAGA+AGG | - | chr3_3:20558066-20558085 | Msa0445780:intron | 40.0% |
| ACTGTGGAAGAAGGATCAAT+AGG | - | chr3_3:20558075-20558094 | Msa0445780:intron | 40.0% | |
| GAAGGATCAATAGGAGGATT+TGG | - | chr3_3:20558084-20558103 | Msa0445780:intron | 40.0% | |
| TTCTCATGTTGCTCAGTTCA+TGG | - | chr3_3:20558107-20558126 | Msa0445780:intron | 40.0% | |
| TCCATCAAGAAGACCATCAA+GGG | + | chr3_3:20558133-20558152 | None:intergenic | 40.0% | |
| TTCCATCAAGAAGACCATCA+AGG | + | chr3_3:20558134-20558153 | None:intergenic | 40.0% | |
| ! | CAGTTTGGCTCAAAAGGACA+GGG | + | chr3_3:20553222-20553241 | None:intergenic | 45.0% |
| CTGAAACGATCAACTCCTCT+TGG | - | chr3_3:20553256-20553275 | Msa0445780:CDS | 45.0% | |
| AAACGATCAACTCCTCTTGG+TGG | - | chr3_3:20553259-20553278 | Msa0445780:CDS | 45.0% | |
| AACCTAACCTGGTTGAGTCT+GGG | + | chr3_3:20553325-20553344 | None:intergenic | 45.0% | |
| AAACCTAACCTGGTTGAGTC+TGG | + | chr3_3:20553326-20553345 | None:intergenic | 45.0% | |
| ACTGATGCACAAACCCCATA+TGG | + | chr3_3:20553568-20553587 | None:intergenic | 45.0% | |
| GTGCATCAGTATCCGAAATG+GGG | - | chr3_3:20553578-20553597 | Msa0445780:intron | 45.0% | |
| TGCATCAGTATCCGAAATGG+GGG | - | chr3_3:20553579-20553598 | Msa0445780:intron | 45.0% | |
| CTTATACTCCTCCCCCATTT+CGG | + | chr3_3:20553593-20553612 | None:intergenic | 45.0% | |
| ! | GAAGAAACCTACACCCCTTT+TGG | - | chr3_3:20553612-20553631 | Msa0445780:intron | 45.0% |
| ! | ACCTACACCCCTTTTGGATA+CGG | - | chr3_3:20553618-20553637 | Msa0445780:intron | 45.0% |
| CTCCAGTTTGAGAAACACTC+TGG | + | chr3_3:20554192-20554211 | None:intergenic | 45.0% | |
| ! | CAGAGTGTTTCTCAAACTGG+AGG | - | chr3_3:20554190-20554209 | Msa0445780:intron | 45.0% |
| TCTCAAACTGGAGGACATCT+AGG | - | chr3_3:20554199-20554218 | Msa0445780:intron | 45.0% | |
| ! | AGGACATCTAGGATCGAATC+TGG | - | chr3_3:20554210-20554229 | Msa0445780:CDS | 45.0% |
| ! | GGACATCTAGGATCGAATCT+GGG | - | chr3_3:20554211-20554230 | Msa0445780:CDS | 45.0% |
| AGCTCAACAACAATGTCAGC+AGG | - | chr3_3:20554554-20554573 | Msa0445780:intron | 45.0% | |
| GCTCAACAACAATGTCAGCA+GGG | - | chr3_3:20554555-20554574 | Msa0445780:intron | 45.0% | |
| AGCTCAGTGTGATTTCGACA+AGG | + | chr3_3:20555507-20555526 | None:intergenic | 45.0% | |
| GGATGTGATCATGGCATGAT+TGG | - | chr3_3:20556107-20556126 | Msa0445780:intron | 45.0% | |
| TGTGATCATGGCATGATTGG+TGG | - | chr3_3:20556110-20556129 | Msa0445780:intron | 45.0% | |
| GACTACATTGGTCCTGTTGA+TGG | - | chr3_3:20556167-20556186 | Msa0445780:intron | 45.0% | |
| TCAATGCTACGACCATCAAC+AGG | + | chr3_3:20556182-20556201 | None:intergenic | 45.0% | |
| AAAGCAGCAGACAAGTACCA+TGG | - | chr3_3:20556305-20556324 | Msa0445780:intron | 45.0% | |
| GACAAGTACCATGGTACAAC+AGG | - | chr3_3:20556314-20556333 | Msa0445780:intron | 45.0% | |
| GCTAAGTTTGATCCTGCAAC+TGG | - | chr3_3:20556505-20556524 | Msa0445780:CDS | 45.0% | |
| GCAAAGCATGATGTGAGTAC+CGG | + | chr3_3:20556559-20556578 | None:intergenic | 45.0% | |
| GGTACTCACATCATGCTTTG+CGG | - | chr3_3:20556558-20556577 | Msa0445780:CDS | 45.0% | |
| !! | GAAGCCGACAAAAGCATTGT+TGG | - | chr3_3:20556601-20556620 | Msa0445780:intron | 45.0% |
| GTGAAGGAAGTGATTCATGC+CGG | + | chr3_3:20556653-20556672 | None:intergenic | 45.0% | |
| CGAAACATCTCGAAGGGAAT+CGG | + | chr3_3:20556675-20556694 | None:intergenic | 45.0% | |
| CCTACATCGAAACATCTCGA+AGG | + | chr3_3:20556682-20556701 | None:intergenic | 45.0% | |
| CCTTCGAGATGTTTCGATGT+AGG | - | chr3_3:20556679-20556698 | Msa0445780:intron | 45.0% | |
| GTCATAAGCTCTCTGCAAGA+AGG | + | chr3_3:20556785-20556804 | None:intergenic | 45.0% | |
| GGTGGTGTTCCGTATATATG+CGG | + | chr3_3:20556954-20556973 | None:intergenic | 45.0% | |
| !!! | TGGGTTGTTTTTTGGTGTGG+TGG | + | chr3_3:20556972-20556991 | None:intergenic | 45.0% |
| TCGTTGTTCGAGGCCTTTAT+TGG | + | chr3_3:20556998-20557017 | None:intergenic | 45.0% | |
| AATAAAGGCCTCGAACAACG+AGG | - | chr3_3:20556997-20557016 | Msa0445780:intron | 45.0% | |
| !!! | TGGGTTTTTCGGTTTTGAGG+CGG | + | chr3_3:20557056-20557075 | None:intergenic | 45.0% |
| !! | TGTTTCGGTCTATTTCTGCC+TGG | + | chr3_3:20557125-20557144 | None:intergenic | 45.0% |
| AACACAACCTAACAGCACAG+TGG | - | chr3_3:20557147-20557166 | Msa0445780:intron | 45.0% | |
| !! | GCTGGATTTGTTGGAGAAGA+TGG | - | chr3_3:20557399-20557418 | Msa0445780:intron | 45.0% |
| GAAGATGGTCCAACACATTG+TGG | - | chr3_3:20557414-20557433 | Msa0445780:intron | 45.0% | |
| GGCATGTCTACCTAATATGG+TGG | - | chr3_3:20557458-20557477 | Msa0445780:intron | 45.0% | |
| ACAGCTAGGTCGATCGTTAA+TGG | + | chr3_3:20557538-20557557 | None:intergenic | 45.0% | |
| ! | CTAGCTGTTTCCGATTTCCA+CGG | - | chr3_3:20557550-20557569 | Msa0445780:CDS | 45.0% |
| ! | TAGCTGTTTCCGATTTCCAC+GGG | - | chr3_3:20557551-20557570 | Msa0445780:CDS | 45.0% |
| TTCCATTTGCCCGTGGAAAT+CGG | + | chr3_3:20557563-20557582 | None:intergenic | 45.0% | |
| !! | GAATAGAGGCATTCCTCTTG+AGG | - | chr3_3:20557605-20557624 | Msa0445780:CDS | 45.0% |
| AAAGGAAGAATGCTCACCGA+AGG | - | chr3_3:20557883-20557902 | Msa0445780:intron | 45.0% | |
| GCCTCAATATTGCAGCAACA+TGG | - | chr3_3:20557961-20557980 | Msa0445780:intron | 45.0% | |
| GCCATGTTGCTGCAATATTG+AGG | + | chr3_3:20557965-20557984 | None:intergenic | 45.0% | |
| CAACCTAGCGAAATCACATG+AGG | - | chr3_3:20558044-20558063 | Msa0445780:intron | 45.0% | |
| GTGGAAGAAGGATCAATAGG+AGG | - | chr3_3:20558078-20558097 | Msa0445780:intron | 45.0% | |
| TATTATCCAGTGGAGGCCAA+TGG | - | chr3_3:20558481-20558500 | Msa0445780:intron | 45.0% | |
| !! | ACAAAGAAAGGAGGCACTAG+AGG | - | chr3_3:20558607-20558626 | Msa0445780:CDS | 45.0% |
| !!! | TACATTATATATTTTTTTAA+AGG | - | chr3_3:20553822-20553841 | Msa0445780:CDS | 5.0% |
| !! | TTAATAATAATAACAATAAT+AGG | + | chr3_3:20554328-20554347 | None:intergenic | 5.0% |
| !!! | TTTTCAAAATATTAAAAATA+GGG | + | chr3_3:20555785-20555804 | None:intergenic | 5.0% |
| !!! | ATTTTCAAAATATTAAAAAT+AGG | + | chr3_3:20555786-20555805 | None:intergenic | 5.0% |
| !!! | ATTTTTAATATTTTGAAAAT+TGG | - | chr3_3:20555786-20555805 | Msa0445780:intron | 5.0% |
| ! | GCAGTTTGGCTCAAAAGGAC+AGG | + | chr3_3:20553223-20553242 | None:intergenic | 50.0% |
| TTGCAATCCCAGACTCAACC+AGG | - | chr3_3:20553315-20553334 | Msa0445780:CDS | 50.0% | |
| ATCCCAGACTCAACCAGGTT+AGG | - | chr3_3:20553320-20553339 | Msa0445780:CDS | 50.0% | |
| ATCAGTATCCGAAATGGGGG+AGG | - | chr3_3:20553582-20553601 | Msa0445780:intron | 50.0% | |
| ! | ACCGTATCCAAAAGGGGTGT+AGG | + | chr3_3:20553622-20553641 | None:intergenic | 50.0% |
| ACAACAATGTCAGCAGGGCT+AGG | - | chr3_3:20554560-20554579 | Msa0445780:intron | 50.0% | |
| TCCAAAAACAGGAATGGCGG+TGG | - | chr3_3:20555213-20555232 | Msa0445780:CDS | 50.0% | |
| CCAAAAACAGGAATGGCGGT+GGG | - | chr3_3:20555214-20555233 | Msa0445780:CDS | 50.0% | |
| GCGGTGGGTAGAGATCTAAA+GGG | - | chr3_3:20555229-20555248 | Msa0445780:CDS | 50.0% | |
| CGGTGGGTAGAGATCTAAAG+GGG | - | chr3_3:20555230-20555249 | Msa0445780:CDS | 50.0% | |
| GGTGGGTAGAGATCTAAAGG+GGG | - | chr3_3:20555231-20555250 | Msa0445780:CDS | 50.0% | |
| CATAGCACCATCACCGATGA+TGG | + | chr3_3:20555275-20555294 | None:intergenic | 50.0% | |
| !! | GTGATGGTGCTATGACTGCA+GGG | - | chr3_3:20555281-20555300 | Msa0445780:CDS | 50.0% |
| ! | ACAAGTATCGCTACCTACCG+CGG | - | chr3_3:20555375-20555394 | Msa0445780:intron | 50.0% |
| TATTGGACCATGAAGGTCCG+CGG | + | chr3_3:20555395-20555414 | None:intergenic | 50.0% | |
| ! | CTGGTGGTATTGGACCATGA+AGG | + | chr3_3:20555402-20555421 | None:intergenic | 50.0% |
| CATGGTCCAATACCACCAGT+TGG | - | chr3_3:20555403-20555422 | Msa0445780:intron | 50.0% | |
| ! | AGAGCACCAACTGGTGGTAT+TGG | + | chr3_3:20555412-20555431 | None:intergenic | 50.0% |
| ! | CATCTACTCAGAGCACCAAC+TGG | + | chr3_3:20555421-20555440 | None:intergenic | 50.0% |
| CTCTGAGTAGATGTCTCAGC+AGG | - | chr3_3:20555428-20555447 | Msa0445780:intron | 50.0% | |
| ! | CATGGCATGATTGGTGGTTC+TGG | - | chr3_3:20556116-20556135 | Msa0445780:intron | 50.0% |
| !! | CATGATGTGAGTACCGGTGT+GGG | + | chr3_3:20556553-20556572 | None:intergenic | 50.0% |
| GGAATACATGCTGCAATGGG+AGG | - | chr3_3:20556622-20556641 | Msa0445780:intron | 50.0% | |
| ATACATGCTGCAATGGGAGG+TGG | - | chr3_3:20556625-20556644 | Msa0445780:intron | 50.0% | |
| ATCTCGAAGGGAATCGGTGA+AGG | + | chr3_3:20556669-20556688 | None:intergenic | 50.0% | |
| ACCTTCACAAGCTAGACCTG+CGG | + | chr3_3:20556734-20556753 | None:intergenic | 50.0% | |
| CTTGCAGAGAGCTTATGACC+AGG | - | chr3_3:20556786-20556805 | Msa0445780:intron | 50.0% | |
| CAAGACGCACAAAGAACTCG+TGG | - | chr3_3:20556901-20556920 | Msa0445780:intron | 50.0% | |
| ACGCACAAAGAACTCGTGGT+AGG | - | chr3_3:20556905-20556924 | Msa0445780:intron | 50.0% | |
| CGCACAAAGAACTCGTGGTA+GGG | - | chr3_3:20556906-20556925 | Msa0445780:intron | 50.0% | |
| TATTCCAGCCTCGTTGTTCG+AGG | + | chr3_3:20557008-20557027 | None:intergenic | 50.0% | |
| !!! | TTTTGAGGCGGTGGTATGCT+TGG | + | chr3_3:20557044-20557063 | None:intergenic | 50.0% |
| !!! | GTTTTTCGGTTTTGAGGCGG+TGG | + | chr3_3:20557053-20557072 | None:intergenic | 50.0% |
| !! | CTGTGCAGCAGCCTGTTTTT+GGG | + | chr3_3:20557075-20557094 | None:intergenic | 50.0% |
| !!! | GCGTGCTGCTTCTGTTGTTT+TGG | + | chr3_3:20557098-20557117 | None:intergenic | 50.0% |
| AACAACAGAAGCAGCACGCA+AGG | - | chr3_3:20557099-20557118 | Msa0445780:intron | 50.0% | |
| TATGGGATCGGGTGCATTAG+TGG | + | chr3_3:20557258-20557277 | None:intergenic | 50.0% | |
| CATCATGCACCACCTTCGAA+TGG | + | chr3_3:20557338-20557357 | None:intergenic | 50.0% | |
| TTCGAAGGTGGTGCATGATG+TGG | - | chr3_3:20557338-20557357 | Msa0445780:CDS | 50.0% | |
| GGAGCCATCACCACCATATT+AGG | + | chr3_3:20557471-20557490 | None:intergenic | 50.0% | |
| CGTGGAAATCGGAAACAGCT+AGG | + | chr3_3:20557552-20557571 | None:intergenic | 50.0% | |
| TTCCGATTTCCACGGGCAAA+TGG | - | chr3_3:20557558-20557577 | Msa0445780:CDS | 50.0% | |
| TTTCCACGGGCAAATGGAAC+TGG | - | chr3_3:20557564-20557583 | Msa0445780:CDS | 50.0% | |
| ACTGGTGTAGAATTGCCACC+AGG | - | chr3_3:20557582-20557601 | Msa0445780:CDS | 50.0% | |
| CTGGTGTAGAATTGCCACCA+GGG | - | chr3_3:20557583-20557602 | Msa0445780:CDS | 50.0% | |
| GAATTGCCACCAGGGAATAG+AGG | - | chr3_3:20557591-20557610 | Msa0445780:CDS | 50.0% | |
| AGAGGAATGCCTCTATTCCC+TGG | + | chr3_3:20557603-20557622 | None:intergenic | 50.0% | |
| TGCTGTCCCAAAGCCCAAAA+GGG | + | chr3_3:20557920-20557939 | None:intergenic | 50.0% | |
| !! | GCAACATGGCTTGCTTGTCA+CGG | - | chr3_3:20557975-20557994 | Msa0445780:intron | 50.0% |
| TGCACGTTTCTGCAAGCCAT+TGG | - | chr3_3:20558005-20558024 | Msa0445780:intron | 50.0% | |
| CTAGGTTGCGAATGAGCGAA+CGG | + | chr3_3:20558032-20558051 | None:intergenic | 50.0% | |
| ! | GCCCTTGATGGTCTTCTTGA+TGG | - | chr3_3:20558129-20558148 | Msa0445780:intron | 50.0% |
| ATTGCTCAGCTGGTGATCCA+TGG | + | chr3_3:20558529-20558548 | None:intergenic | 50.0% | |
| GCAACAGCTAATTGCTCAGC+TGG | + | chr3_3:20558539-20558558 | None:intergenic | 50.0% | |
| GCTGAGCAATTAGCTGTTGC+TGG | - | chr3_3:20558539-20558558 | Msa0445780:CDS | 50.0% | |
| CTTGTGGGATGTTGGCCATC+AGG | - | chr3_3:20554291-20554310 | Msa0445780:CDS | 55.0% | |
| ! | CCCACCGCCATTCCTGTTTT+TGG | + | chr3_3:20555217-20555236 | None:intergenic | 55.0% |
| GGCGGTGGGTAGAGATCTAA+AGG | - | chr3_3:20555228-20555247 | Msa0445780:CDS | 55.0% | |
| GTGGTCACCATCATCGGTGA+TGG | - | chr3_3:20555265-20555284 | Msa0445780:CDS | 55.0% | |
| !! | GGTGATGGTGCTATGACTGC+AGG | - | chr3_3:20555280-20555299 | Msa0445780:CDS | 55.0% |
| ! | CTACTCAGAGCACCAACTGG+TGG | + | chr3_3:20555418-20555437 | None:intergenic | 55.0% |
| !! | GCATGATGTGAGTACCGGTG+TGG | + | chr3_3:20556554-20556573 | None:intergenic | 55.0% |
| CACGCTGTTACATTTGCCGC+AGG | - | chr3_3:20556715-20556734 | Msa0445780:intron | 55.0% | |
| ! | GCTGTGCAGCAGCCTGTTTT+TGG | + | chr3_3:20557076-20557095 | None:intergenic | 55.0% |
| ! | CTGCTTGCCACTGTGCTGTT+AGG | + | chr3_3:20557157-20557176 | None:intergenic | 55.0% |
| ACACCAGTTCCATTTGCCCG+TGG | + | chr3_3:20557570-20557589 | None:intergenic | 55.0% | |
| GGAATGCCTCTATTCCCTGG+TGG | + | chr3_3:20557600-20557619 | None:intergenic | 55.0% | |
| AAGGGCCACTCTTTCGCCTT+CGG | + | chr3_3:20557902-20557921 | None:intergenic | 55.0% | |
| ! | AGGCGAAAGAGTGGCCCTTT+TGG | - | chr3_3:20557903-20557922 | Msa0445780:intron | 55.0% |
| ! | GGCGAAAGAGTGGCCCTTTT+GGG | - | chr3_3:20557904-20557923 | Msa0445780:intron | 55.0% |
| ! | AGAGTGGCCCTTTTGGGCTT+TGG | - | chr3_3:20557910-20557929 | Msa0445780:intron | 55.0% |
| ! | GAGTGGCCCTTTTGGGCTTT+GGG | - | chr3_3:20557911-20557930 | Msa0445780:intron | 55.0% |
| CTGCTGTCCCAAAGCCCAAA+AGG | + | chr3_3:20557921-20557940 | None:intergenic | 55.0% | |
| !! | ACATGGCTTGCTTGTCACGG+TGG | - | chr3_3:20557978-20557997 | Msa0445780:intron | 55.0% |
| CGAATGAGCGAACGGTCCAA+TGG | + | chr3_3:20558024-20558043 | None:intergenic | 55.0% | |
| GCTCAGTTCATGGCCCTTGA+TGG | - | chr3_3:20558117-20558136 | Msa0445780:intron | 55.0% | |
| ! | GAAACACCATTGGCCTCCAC+TGG | + | chr3_3:20558490-20558509 | None:intergenic | 55.0% |
| !! | TGGTGCTATGACTGCAGGGC+AGG | - | chr3_3:20555285-20555304 | Msa0445780:CDS | 60.0% |
| GACTGCAGGGCAGGCATTTG+AGG | - | chr3_3:20555294-20555313 | Msa0445780:CDS | 60.0% | |
| CTACCTACCGCGGACCTTCA+TGG | - | chr3_3:20555385-20555404 | Msa0445780:intron | 60.0% | |
| CAAGACCAAGGCTCCCACAC+CGG | - | chr3_3:20556537-20556556 | Msa0445780:CDS | 60.0% | |
| GCTGCAATGGGAGGTGGAAC+CGG | - | chr3_3:20556631-20556650 | Msa0445780:intron | 60.0% | |
| ! | GCCGCAGGTCTAGCTTGTGA+AGG | - | chr3_3:20556730-20556749 | Msa0445780:intron | 60.0% |
| AAGGCCTCGAACAACGAGGC+TGG | - | chr3_3:20557001-20557020 | Msa0445780:intron | 60.0% | |
| GCTCACCGAAGGCGAAAGAG+TGG | - | chr3_3:20557894-20557913 | Msa0445780:intron | 60.0% | |
| !! | TGGCTTGCTTGTCACGGTGG+CGG | - | chr3_3:20557981-20558000 | Msa0445780:intron | 60.0% |
| CAGTGTCACCGCCGTCAATG+AGG | + | chr3_3:20558358-20558377 | None:intergenic | 60.0% | |
| GGACCATGAAGGTCCGCGGT+AGG | + | chr3_3:20555391-20555410 | None:intergenic | 65.0% | |
| !! | GAGTACCGGTGTGGGAGCCT+TGG | + | chr3_3:20556545-20556564 | None:intergenic | 65.0% |
| CAGAAGCAGCACGCAAGGCC+AGG | - | chr3_3:20557104-20557123 | Msa0445780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 20553193 | 20558640 | 20553193 | ID=Msa0445780;Name=Msa0445780 |
| chr3_3 | mRNA | 20553193 | 20558640 | 20553193 | ID=Msa0445780-mRNA-1;Parent=Msa0445780;Name=Msa0445780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.22|0|1|1|1|10|0|696 |
| chr3_3 | exon | 20558497 | 20558640 | 20558497 | ID=Msa0445780-mRNA-1:exon:4300;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20558155 | 20558280 | 20558155 | ID=Msa0445780-mRNA-1:exon:4299;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20557521 | 20557685 | 20557521 | ID=Msa0445780-mRNA-1:exon:4298;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20557252 | 20557402 | 20557252 | ID=Msa0445780-mRNA-1:exon:4297;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20556356 | 20556609 | 20556356 | ID=Msa0445780-mRNA-1:exon:4296;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20555507 | 20555732 | 20555507 | ID=Msa0445780-mRNA-1:exon:4295;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20555026 | 20555333 | 20555026 | ID=Msa0445780-mRNA-1:exon:4294;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20554207 | 20554488 | 20554207 | ID=Msa0445780-mRNA-1:exon:4293;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20553672 | 20553956 | 20553672 | ID=Msa0445780-mRNA-1:exon:4292;Parent=Msa0445780-mRNA-1 |
| chr3_3 | exon | 20553193 | 20553342 | 20553193 | ID=Msa0445780-mRNA-1:exon:4291;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20558497 | 20558640 | 20558497 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20558155 | 20558280 | 20558155 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20557521 | 20557685 | 20557521 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20557252 | 20557402 | 20557252 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20556356 | 20556609 | 20556356 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20555507 | 20555732 | 20555507 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20555026 | 20555333 | 20555026 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20554207 | 20554488 | 20554207 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20553672 | 20553956 | 20553672 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| chr3_3 | CDS | 20553193 | 20553342 | 20553193 | ID=Msa0445780-mRNA-1:cds;Parent=Msa0445780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
