Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981270 | XP_003594033.1 | 86.134 | 714 | 80 | 2 | 1 | 695 | 1 | 714 | 0.0 | 1258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981270 | sp|O78328|DXS_CAPAN | 73.296 | 719 | 167 | 4 | 1 | 695 | 1 | 718 | 0.0 | 1048 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981270 | G7IFK9 | 86.134 | 714 | 80 | 2 | 1 | 695 | 1 | 714 | 0.0 | 1258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0981270 | 0.812072 | 5.096799e-51 | -8.615850e-47 |
| Msa0092630 | Msa0981270 | 0.994405 | 5.521547e-207 | -8.615850e-47 |
| Msa0102070 | Msa0981270 | 0.820437 | 6.864118e-53 | -8.615850e-47 |
| Msa0604350 | Msa0981270 | 0.814813 | 1.272459e-51 | -8.615850e-47 |
| Msa0636170 | Msa0981270 | 0.814191 | 1.747295e-51 | -8.615850e-47 |
| Msa0726140 | Msa0981270 | 0.816945 | 4.255826e-52 | -8.615850e-47 |
| Msa0729800 | Msa0981270 | 0.833205 | 6.095044e-56 | -8.615850e-47 |
| Msa0733290 | Msa0981270 | 0.809513 | 1.823565e-50 | -8.615850e-47 |
| Msa0743810 | Msa0981270 | 0.843585 | 1.279839e-58 | -8.615850e-47 |
| Msa0745060 | Msa0981270 | 0.832980 | 6.935199e-56 | -8.615850e-47 |
| Msa0767720 | Msa0981270 | 0.809542 | 1.797254e-50 | -8.615850e-47 |
| Msa0783160 | Msa0981270 | 0.843238 | 1.584056e-58 | -8.615850e-47 |
| Msa0825860 | Msa0981270 | 0.838685 | 2.482934e-57 | -8.615850e-47 |
| Msa0145750 | Msa0981270 | 0.804309 | 2.298568e-49 | -8.615850e-47 |
| Msa0153910 | Msa0981270 | 0.806524 | 7.888414e-50 | -8.615850e-47 |
| Msa0200000 | Msa0981270 | 0.806436 | 8.233309e-50 | -8.615850e-47 |
| Msa0227480 | Msa0981270 | 0.836344 | 9.887279e-57 | -8.615850e-47 |
| Msa0232850 | Msa0981270 | 0.808876 | 2.496636e-50 | -8.615850e-47 |
| Msa0365500 | Msa0981270 | 0.812770 | 3.586034e-51 | -8.615850e-47 |
| Msa0414410 | Msa0981270 | 0.803177 | 3.947447e-49 | -8.615850e-47 |
| Msa0414420 | Msa0981270 | 0.855551 | 5.847181e-62 | -8.615850e-47 |
| Msa0438620 | Msa0981270 | 0.806010 | 1.012167e-49 | -8.615850e-47 |
| Msa0445780 | Msa0981270 | 0.919119 | 6.700822e-87 | -8.615850e-47 |
| Msa0450000 | Msa0981270 | 0.825226 | 5.262436e-54 | -8.615850e-47 |
| Msa0452900 | Msa0981270 | 0.861001 | 1.393858e-63 | -8.615850e-47 |
| Msa0981270 | Msa0989060 | 0.815219 | 1.034382e-51 | -8.615850e-47 |
| Msa0981270 | Msa1016280 | 0.847761 | 9.426977e-60 | -8.615850e-47 |
| Msa0981270 | Msa1023050 | 0.806319 | 8.714948e-50 | -8.615850e-47 |
| Msa0981270 | Msa1025360 | 0.844481 | 7.362483e-59 | -8.615850e-47 |
| Msa0981270 | Msa1025370 | 0.823937 | 1.058112e-53 | -8.615850e-47 |
| Msa0981270 | Msa1044830 | 0.831096 | 2.025507e-55 | -8.615850e-47 |
| Msa0981270 | Msa1044840 | 0.844190 | 8.811491e-59 | -8.615850e-47 |
| Msa0981270 | Msa1060840 | 0.828795 | 7.371525e-55 | -8.615850e-47 |
| Msa0981270 | Msa1092990 | 0.833121 | 6.396832e-56 | -8.615850e-47 |
| Msa0981270 | Msa1100980 | 0.829933 | 3.900612e-55 | -8.615850e-47 |
| Msa0981270 | Msa1109440 | 0.831588 | 1.532816e-55 | -8.615850e-47 |
| Msa0981270 | Msa1121200 | 0.817970 | 2.501460e-52 | -8.615850e-47 |
| Msa0981270 | Msa1135740 | 0.817777 | 2.764865e-52 | -8.615850e-47 |
| Msa0981270 | Msa1146110 | 0.819063 | 1.413908e-52 | -8.615850e-47 |
| Msa0981270 | Msa1149360 | 0.822787 | 1.964830e-53 | -8.615850e-47 |
| Msa0981270 | Msa1150370 | 0.803478 | 3.420532e-49 | -8.615850e-47 |
| Msa0981270 | Msa1187940 | 0.828588 | 8.270370e-55 | -8.615850e-47 |
| Msa0981270 | Msa1187950 | 0.802920 | 4.462490e-49 | -8.615850e-47 |
| Msa0981270 | Msa1192640 | 0.833626 | 4.787770e-56 | -8.615850e-47 |
| Msa0981270 | Msa1269670 | 0.831300 | 1.805124e-55 | -8.615850e-47 |
| Msa0981270 | Msa1270230 | 0.846993 | 1.531735e-59 | -8.615850e-47 |
| Msa0981270 | Msa1270240 | 0.815057 | 1.123617e-51 | -8.615850e-47 |
| Msa0981270 | Msa1270270 | 0.815802 | 7.671174e-52 | -8.615850e-47 |
| Msa0981270 | Msa1283330 | 0.826985 | 2.008669e-54 | -8.615850e-47 |
| Msa0981270 | Msa1285930 | 0.853625 | 2.111719e-61 | -8.615850e-47 |
| Msa0981270 | Msa1287800 | 0.843436 | 1.402872e-58 | -8.615850e-47 |
| Msa0981270 | Msa1287810 | 0.855893 | 4.645825e-62 | -8.615850e-47 |
| Msa0981270 | Msa1289430 | 0.800196 | 1.614121e-48 | -8.615850e-47 |
| Msa0981270 | Msa1310120 | 0.801707 | 7.929692e-49 | -8.615850e-47 |
| Msa0981270 | Msa1340590 | 0.830602 | 2.677601e-55 | -8.615850e-47 |
| Msa0981270 | Msa1397150 | 0.994468 | 1.700327e-207 | -8.615850e-47 |
| Msa0981270 | Msa1397580 | 0.829268 | 5.661234e-55 | -8.615850e-47 |
| Msa0981270 | Msa1404000 | 0.819681 | 1.022234e-52 | -8.615850e-47 |
| Msa0981270 | Msa1408780 | 0.805872 | 1.082293e-49 | -8.615850e-47 |
| Msa0981270 | Msa1415310 | 0.802947 | 4.404276e-49 | -8.615850e-47 |
| Msa0981270 | Msa1422180 | 0.827409 | 1.590091e-54 | -8.615850e-47 |
| Msa0981270 | Msa1433120 | 0.810634 | 1.045728e-50 | -8.615850e-47 |
| Msa0267000 | Msa0981270 | 0.827273 | 1.713632e-54 | -8.615850e-47 |
| Msa0267010 | Msa0981270 | 0.835697 | 1.443354e-56 | -8.615850e-47 |
| Msa0304170 | Msa0981270 | 0.808061 | 3.727237e-50 | -8.615850e-47 |
| Msa0342240 | Msa0981270 | 0.829340 | 5.437369e-55 | -8.615850e-47 |
| Msa0360510 | Msa0981270 | 0.810893 | 9.191752e-51 | -8.615850e-47 |
| Msa0491590 | Msa0981270 | 0.801143 | 1.034684e-48 | -8.615850e-47 |
| Msa0534540 | Msa0981270 | 0.811193 | 7.910987e-51 | -8.615850e-47 |
| Msa0564890 | Msa0981270 | 0.827697 | 1.355522e-54 | -8.615850e-47 |
| Msa0846330 | Msa0981270 | 0.814952 | 1.185519e-51 | -8.615850e-47 |
| Msa0846350 | Msa0981270 | 0.806708 | 7.213851e-50 | -8.615850e-47 |
| Msa0858980 | Msa0981270 | 0.811792 | 5.865020e-51 | -8.615850e-47 |
| Msa0865320 | Msa0981270 | 0.819802 | 9.592430e-53 | -8.615850e-47 |
| Msa0872230 | Msa0981270 | 0.944881 | 8.611652e-104 | -8.615850e-47 |
| Msa0888370 | Msa0981270 | 0.822294 | 2.557812e-53 | -8.615850e-47 |
| Msa0899430 | Msa0981270 | 0.815529 | 8.824358e-52 | -8.615850e-47 |
| Msa0907260 | Msa0981270 | 0.800513 | 1.391086e-48 | -8.615850e-47 |
| Msa0952720 | Msa0981270 | 0.811636 | 6.339683e-51 | -8.615850e-47 |
| Msa0956270 | Msa0981270 | 0.804420 | 2.179413e-49 | -8.615850e-47 |
| Msa0958550 | Msa0981270 | 0.807011 | 6.223959e-50 | -8.615850e-47 |
| Msa0974870 | Msa0981270 | 0.969059 | 1.434677e-129 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981270 | MtrunA17_Chr2g0286641 | 86.134 | 714 | 80 | 2 | 1 | 695 | 1 | 714 | 0.0 | 1258 |
| Msa0981270 | MtrunA17_Chr4g0066611 | 75.178 | 701 | 148 | 3 | 21 | 695 | 16 | 716 | 0.0 | 1060 |
| Msa0981270 | MtrunA17_Chr8g0367181 | 64.723 | 686 | 205 | 3 | 44 | 692 | 23 | 708 | 0.0 | 892 |
| Msa0981270 | MtrunA17_Chr8g0367201 | 66.461 | 647 | 195 | 1 | 68 | 692 | 62 | 708 | 0.0 | 887 |
| Msa0981270 | MtrunA17_Chr3g0138171 | 55.675 | 652 | 261 | 5 | 67 | 695 | 60 | 706 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981270 | AT4G15560.1 | 73.810 | 672 | 153 | 2 | 44 | 692 | 45 | 716 | 0.0 | 1018 |
| Msa0981270 | AT3G21500.3 | 75.118 | 635 | 147 | 3 | 59 | 692 | 50 | 674 | 0.0 | 987 |
| Msa0981270 | AT3G21500.2 | 76.102 | 590 | 130 | 3 | 59 | 647 | 50 | 629 | 0.0 | 927 |
| Msa0981270 | AT3G21500.1 | 75.932 | 590 | 130 | 4 | 59 | 647 | 50 | 628 | 0.0 | 920 |
| Msa0981270 | AT5G11380.1 | 51.511 | 662 | 272 | 9 | 56 | 692 | 59 | 696 | 0.0 | 653 |
| Msa0981270 | AT5G11380.3 | 47.901 | 524 | 224 | 9 | 56 | 554 | 59 | 558 | 2.37e-158 | 469 |
| Msa0981270 | AT5G11380.2 | 48.907 | 503 | 211 | 7 | 56 | 534 | 59 | 539 | 1.03e-157 | 468 |
| Msa0981270 | AT5G11380.4 | 48.290 | 497 | 211 | 7 | 56 | 528 | 59 | 533 | 7.16e-152 | 453 |
Find 184 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATGTTGTCACTGAAAA+AGG | 0.249215 | 6_4:+20537275 | Msa0981270:CDS |
| TTCTCATGTTGCTCAGTTCA+TGG | 0.260981 | 6_4:+20539122 | Msa0981270:CDS |
| GAGAGTGAATTTGATAGTTT+TGG | 0.274045 | 6_4:+20535562 | Msa0981270:CDS |
| GAAGAAACCTACACCCCTTT+TGG | 0.281281 | 6_4:+20534653 | Msa0981270:CDS |
| AGGCGAAAGAGTGGCCCTTT+TGG | 0.287344 | 6_4:+20538918 | Msa0981270:CDS |
| TATGGCATGTCTACCTAATA+TGG | 0.308128 | 6_4:+20538470 | Msa0981270:CDS |
| TATGAAGACTCTAACGATTA+AGG | 0.310044 | 6_4:+20534698 | Msa0981270:CDS |
| GGAGCCATCACCACCATATT+AGG | 0.321626 | 6_4:-20538483 | None:intergenic |
| CATGGCATGATTGGTGGTTC+TGG | 0.323646 | 6_4:+20537131 | Msa0981270:CDS |
| GCCCTTGATGGTCTTCTTGA+TGG | 0.325921 | 6_4:+20539144 | Msa0981270:CDS |
| GCTCAGTTCATGGCCCTTGA+TGG | 0.326804 | 6_4:+20539132 | Msa0981270:CDS |
| GAAGGATCAATAGGAGGATT+TGG | 0.330255 | 6_4:+20539099 | Msa0981270:CDS |
| AAACCTAACCTGGTTGAGTC+TGG | 0.337829 | 6_4:-20534363 | None:intergenic |
| CCATGGTCGATATAAATATC+TGG | 0.342613 | 6_4:-20539524 | None:intergenic |
| CAAAATTCTTGGACAAAGAA+AGG | 0.345530 | 6_4:+20539610 | Msa0981270:CDS |
| CGTTAGAGTCTTCATATCTT+CGG | 0.357380 | 6_4:-20534691 | None:intergenic |
| TTGTCGATAACAAATCTTAC+TGG | 0.362049 | 6_4:-20538390 | None:intergenic |
| ATCCAGAGTGTTTCTCAAAC+TGG | 0.373688 | 6_4:+20535228 | Msa0981270:CDS |
| TGGTGGTTCTAACTATCAAT+GGG | 0.383908 | 6_4:+20534316 | Msa0981270:CDS |
| GACTACATTGGTCCTGTTGA+TGG | 0.387476 | 6_4:+20537182 | Msa0981270:CDS |
| TTCCATTTGCCCGTGGAAAT+CGG | 0.388002 | 6_4:-20538575 | None:intergenic |
| GACGAGTAAATTGCACAAAA+AGG | 0.388561 | 6_4:-20537775 | None:intergenic |
| GCTGGATTTGTTGGAGAAGA+TGG | 0.397017 | 6_4:+20538414 | Msa0981270:CDS |
| GTTAAGAGTCCTAAGAAAAC+TGG | 0.398320 | 6_4:+20537242 | Msa0981270:CDS |
| AAGGGCCACTCTTTCGCCTT+CGG | 0.398795 | 6_4:-20538914 | None:intergenic |
| ATAAAATACTCACTGGTAGA+AGG | 0.400303 | 6_4:+20535482 | Msa0981270:CDS |
| GCTGCAATGGGAGGTGGAAC+CGG | 0.400403 | 6_4:+20537646 | Msa0981270:CDS |
| GACTGCAGGGCAGGCATTTG+AGG | 0.403656 | 6_4:+20536307 | Msa0981270:CDS |
| GCTGAGCAATTAGCTGTTGC+TGG | 0.407903 | 6_4:+20539554 | Msa0981270:CDS |
| ACTCTTAACTTGTTTGAGAA+TGG | 0.410412 | 6_4:-20537228 | None:intergenic |
| ATCGACAAAGCTGGATTTGT+TGG | 0.413314 | 6_4:+20538405 | Msa0981270:CDS |
| CTTCGAGATGTTTCGATGTA+GGG | 0.413316 | 6_4:+20537695 | Msa0981270:CDS |
| CTACCTACCGCGGACCTTCA+TGG | 0.415412 | 6_4:+20536398 | Msa0981270:CDS |
| AGAGCACCAACTGGTGGTAT+TGG | 0.417530 | 6_4:-20536422 | None:intergenic |
| AAAACTGTTGCTGCTATTTG+AGG | 0.418915 | 6_4:-20539587 | None:intergenic |
| CTGCTGTCCCAAAGCCCAAA+AGG | 0.419334 | 6_4:-20538933 | None:intergenic |
| TTGGTGGTTCTAACTATCAA+TGG | 0.424273 | 6_4:+20534315 | Msa0981270:CDS |
| ACAGCTAGGTCGATCGTTAA+TGG | 0.425372 | 6_4:-20538550 | None:intergenic |
| GTGAATATTGCTAAGGTTGA+TGG | 0.425949 | 6_4:+20537101 | Msa0981270:intron |
| GTTAGAGTCTTCATATCTTC+GGG | 0.428007 | 6_4:-20534690 | None:intergenic |
| GCTAAGTTTGATCCTGCAAC+TGG | 0.431828 | 6_4:+20537520 | Msa0981270:CDS |
| TCTCAAACTGGAGGACATCT+AGG | 0.435608 | 6_4:+20535240 | Msa0981270:CDS |
| CTTGTGGGATGTTGGCCATC+AGG | 0.437600 | 6_4:+20535332 | Msa0981270:CDS |
| AGGACATCTAGGATCGAATC+TGG | 0.438050 | 6_4:+20535251 | Msa0981270:CDS |
| TAGGAGCATTGAAAACATAA+TGG | 0.438816 | 6_4:-20535299 | None:intergenic |
| CCTTCGAGATGTTTCGATGT+AGG | 0.439173 | 6_4:+20537694 | Msa0981270:CDS |
| TTCCGATTTCCACGGGCAAA+TGG | 0.439179 | 6_4:+20538573 | Msa0981270:CDS |
| GAAGCCGACAAAAGCATTGT+TGG | 0.443373 | 6_4:+20537616 | Msa0981270:CDS |
| CGAAACATCTCGAAGGGAAT+CGG | 0.443552 | 6_4:-20537687 | None:intergenic |
| TAGGAACTAAAACAACTTGC+GGG | 0.449908 | 6_4:+20535186 | Msa0981270:intron |
| TTTCCACGGGCAAATGGAAC+TGG | 0.450138 | 6_4:+20538579 | Msa0981270:CDS |
| TTGTGCATCAGTATCCGAAA+TGG | 0.455448 | 6_4:+20534617 | Msa0981270:CDS |
| ACTGATGCACAAACCCCATA+TGG | 0.458213 | 6_4:-20534606 | None:intergenic |
| TCTTCTTGATGGAAAATTGA+AGG | 0.462055 | 6_4:+20539155 | Msa0981270:CDS |
| GATACTTTACCGTATCCAAA+AGG | 0.462570 | 6_4:-20534668 | None:intergenic |
| TGTGCATCAGTATCCGAAAT+GGG | 0.464344 | 6_4:+20534618 | Msa0981270:CDS |
| GCAGTTTGGCTCAAAAGGAC+AGG | 0.469469 | 6_4:-20534260 | None:intergenic |
| TGCACGTTTCTGCAAGCCAT+TGG | 0.470257 | 6_4:+20539020 | Msa0981270:CDS |
| ACATGTTAACAGATAGGAAA+AGG | 0.470576 | 6_4:+20538880 | Msa0981270:intron |
| ACTGTGGAAGAAGGATCAAT+AGG | 0.471946 | 6_4:+20539090 | Msa0981270:CDS |
| TCAACACTATTTGAAGAACT+TGG | 0.472738 | 6_4:+20537155 | Msa0981270:CDS |
| AGGCAGAAAGATGGATTAAG+TGG | 0.473089 | 6_4:+20535523 | Msa0981270:CDS |
| AGATTTGTTATCGACAAAGC+TGG | 0.474221 | 6_4:+20538396 | Msa0981270:CDS |
| CGAAGCAGAGATTATGCATA+TGG | 0.475633 | 6_4:+20538512 | Msa0981270:CDS |
| TCCTATAGACAAAATCTTGT+GGG | 0.476226 | 6_4:+20535317 | Msa0981270:CDS |
| CTGAAACGATCAACTCCTCT+TGG | 0.478748 | 6_4:+20534296 | Msa0981270:CDS |
| GGCGGTGGGTAGAGATCTAA+AGG | 0.482790 | 6_4:+20536241 | Msa0981270:CDS |
| GAGATTTGACTGAAGATATC+CGG | 0.489301 | 6_4:-20536342 | None:intergenic |
| GACAAAATCTTGTGGGATGT+TGG | 0.491871 | 6_4:+20535324 | Msa0981270:CDS |
| AGCTCAACAACAATGTCAGC+AGG | 0.492313 | 6_4:+20535595 | Msa0981270:CDS |
| GAATTGCCACCAGGGAATAG+AGG | 0.510992 | 6_4:+20538606 | Msa0981270:CDS |
| GGATGTGATCATGGCATGAT+TGG | 0.512036 | 6_4:+20537122 | Msa0981270:CDS |
| CATAGCACCATCACCGATGA+TGG | 0.512307 | 6_4:-20536285 | None:intergenic |
| AACCTAACCTGGTTGAGTCT+GGG | 0.512700 | 6_4:-20534362 | None:intergenic |
| CCAGATATTTATATCGACCA+TGG | 0.516787 | 6_4:+20539524 | Msa0981270:CDS |
| GCAACAGCTAATTGCTCAGC+TGG | 0.516828 | 6_4:-20539551 | None:intergenic |
| TGCTGTCCCAAAGCCCAAAA+GGG | 0.518857 | 6_4:-20538932 | None:intergenic |
| AAACCTCATGTGATTTCGCT+AGG | 0.519301 | 6_4:-20539062 | None:intergenic |
| TCAATGCTATGACCATCAAC+AGG | 0.520276 | 6_4:-20537194 | None:intergenic |
| CAGTTTGGCTCAAAAGGACA+GGG | 0.521229 | 6_4:-20534259 | None:intergenic |
| CATCTACTCAGAGCACCAAC+TGG | 0.523518 | 6_4:-20536431 | None:intergenic |
| CTCCTATAGACAAAATCTTG+TGG | 0.525889 | 6_4:+20535316 | Msa0981270:CDS |
| ATACTTTACCGTATCCAAAA+GGG | 0.529734 | 6_4:-20534667 | None:intergenic |
| AGGTAAGGAGAAAACCATAT+GGG | 0.531352 | 6_4:+20534592 | Msa0981270:intron |
| GGTACTCACATCATGCTTTG+CGG | 0.533753 | 6_4:+20537573 | Msa0981270:CDS |
| AACATACTTACCTTGACAAG+AGG | 0.534272 | 6_4:-20536479 | None:intergenic |
| TGGTGCTATGACTGCAGGGC+AGG | 0.534315 | 6_4:+20536298 | Msa0981270:CDS |
| GGTGATGGTGCTATGACTGC+AGG | 0.536641 | 6_4:+20536293 | Msa0981270:CDS |
| ACAACAATGTCAGCAGGGCT+AGG | 0.536842 | 6_4:+20535601 | Msa0981270:CDS |
| AAGGTTGATGGATGTGATCA+TGG | 0.538673 | 6_4:+20537113 | Msa0981270:intron |
| TAAATATCTGGAAACACCAT+TGG | 0.539217 | 6_4:-20539512 | None:intergenic |
| ATAATCTCTGCTTCGTCAGA+AGG | 0.540250 | 6_4:-20538504 | None:intergenic |
| AATAATGTGGTCACCATCAT+CGG | 0.543548 | 6_4:+20536272 | Msa0981270:CDS |
| CATACATTGAGGCAGAAAGA+TGG | 0.543587 | 6_4:+20535514 | Msa0981270:CDS |
| CTCTGAGTAGATGTCTCAGC+AGG | 0.543966 | 6_4:+20536441 | Msa0981270:CDS |
| TCTACCTAATATGGTGGTGA+TGG | 0.548667 | 6_4:+20538479 | Msa0981270:CDS |
| TGTGATCATGGCATGATTGG+TGG | 0.549795 | 6_4:+20537125 | Msa0981270:CDS |
| ATCTCGAAGGGAATCGGTGA+AGG | 0.551457 | 6_4:-20537681 | None:intergenic |
| ATACATGCTGCAATGGGAGG+TGG | 0.551655 | 6_4:+20537640 | Msa0981270:CDS |
| TAGGTAAGGAGAAAACCATA+TGG | 0.552253 | 6_4:+20534591 | Msa0981270:intron |
| GAATAGAGGCATTCCTCTTG+AGG | 0.552272 | 6_4:+20538620 | Msa0981270:CDS |
| ACCGTATCCAAAAGGGGTGT+AGG | 0.554410 | 6_4:-20534660 | None:intergenic |
| TCCATCAAGAAGACCATCAA+GGG | 0.555768 | 6_4:-20539145 | None:intergenic |
| ATACTCTAACTCACCTCAAG+AGG | 0.555952 | 6_4:-20538633 | None:intergenic |
| AGAGGAATGCCTCTATTCCC+TGG | 0.556815 | 6_4:-20538615 | None:intergenic |
| AAACGATCAACTCCTCTTGG+TGG | 0.558744 | 6_4:+20534299 | Msa0981270:CDS |
| CACGCTGTTACATTTGCCGC+AGG | 0.559010 | 6_4:+20537730 | Msa0981270:CDS |
| CTAGCTGTTTCCGATTTCCA+CGG | 0.559137 | 6_4:+20538565 | Msa0981270:CDS |
| TTCCATCAAGAAGACCATCA+AGG | 0.560580 | 6_4:-20539146 | None:intergenic |
| CGTGGAAATCGGAAACAGCT+AGG | 0.561026 | 6_4:-20538564 | None:intergenic |
| CTCCAGTTTGAGAAACACTC+TGG | 0.562966 | 6_4:-20535230 | None:intergenic |
| GCCGCAGGTCTAGCTTGTGA+AGG | 0.565344 | 6_4:+20537745 | Msa0981270:CDS |
| ATTGCTCAGCTGGTGATCCA+TGG | 0.566910 | 6_4:-20539541 | None:intergenic |
| TTGCAATCCCAGACTCAACC+AGG | 0.568095 | 6_4:+20534355 | Msa0981270:CDS |
| GTGACAACATGGATTAGTAC+AGG | 0.569539 | 6_4:-20537266 | None:intergenic |
| GTTGGAATACATGCTGCAAT+GGG | 0.571998 | 6_4:+20537634 | Msa0981270:CDS |
| GAACTTGGACTTGACTACAT+TGG | 0.572725 | 6_4:+20537170 | Msa0981270:CDS |
| TGTTGGAATACATGCTGCAA+TGG | 0.575153 | 6_4:+20537633 | Msa0981270:CDS |
| TGGCTTGCTTGTCACGGTGG+CGG | 0.576309 | 6_4:+20538996 | Msa0981270:CDS |
| TCAAAAGAACCACAATGTGT+TGG | 0.576620 | 6_4:-20538438 | None:intergenic |
| ACTGGTGTAGAATTGCCACC+AGG | 0.577521 | 6_4:+20538597 | Msa0981270:CDS |
| TTTGAGGCAATGAATAATGC+CGG | 0.578565 | 6_4:+20536323 | Msa0981270:CDS |
| GTCATAAGCTCTCTGCAAGA+AGG | 0.579687 | 6_4:-20537797 | None:intergenic |
| CGAATGAGCGAACGGTCCAA+TGG | 0.582651 | 6_4:-20539036 | None:intergenic |
| TATCCACATAAAATACTCAC+TGG | 0.584714 | 6_4:+20535475 | Msa0981270:CDS |
| GGCAGAAAGATGGATTAAGT+GGG | 0.585018 | 6_4:+20535524 | Msa0981270:CDS |
| AGCATTGAAAACATAATGGA+GGG | 0.588745 | 6_4:-20535295 | None:intergenic |
| TAGCTGTTTCCGATTTCCAC+GGG | 0.589014 | 6_4:+20538566 | Msa0981270:CDS |
| GAGCATTGAAAACATAATGG+AGG | 0.590912 | 6_4:-20535296 | None:intergenic |
| ATCAGACAAACCTCTTGTCA+AGG | 0.591557 | 6_4:+20536469 | Msa0981270:CDS |
| GAGTACCGGTGTGGGAGCCT+TGG | 0.593110 | 6_4:-20537557 | None:intergenic |
| CTTGCAGAGAGCTTATGACC+AGG | 0.594809 | 6_4:+20537801 | Msa0981270:CDS |
| TTCGAAGGTGGTGCATGATG+TGG | 0.595656 | 6_4:+20538353 | Msa0981270:intron |
| TATTATCCAGTGGAGGCCAA+TGG | 0.603817 | 6_4:+20539496 | Msa0981270:intron |
| GTGGTCACCATCATCGGTGA+TGG | 0.604425 | 6_4:+20536278 | Msa0981270:CDS |
| GCCTCAATATTGCAGCAACA+TGG | 0.604435 | 6_4:+20538976 | Msa0981270:CDS |
| GCGGTGGGTAGAGATCTAAA+GGG | 0.604452 | 6_4:+20536242 | Msa0981270:CDS |
| GTAGGAACTAAAACAACTTG+CGG | 0.604690 | 6_4:+20535185 | Msa0981270:intron |
| GGACATCTAGGATCGAATCT+GGG | 0.606948 | 6_4:+20535252 | Msa0981270:CDS |
| GCCATGTTGCTGCAATATTG+AGG | 0.614726 | 6_4:-20538977 | None:intergenic |
| ACAAAGAAAGGAGGCACTAG+AGG | 0.615250 | 6_4:+20539622 | Msa0981270:CDS |
| GCAAAGCATGATGTGAGTAC+CGG | 0.615355 | 6_4:-20537571 | None:intergenic |
| GGAATAAGATGCATACATTG+AGG | 0.616684 | 6_4:+20535503 | Msa0981270:CDS |
| GCAACATGGCTTGCTTGTCA+CGG | 0.617203 | 6_4:+20538990 | Msa0981270:CDS |
| CTACATCGAAACATCTCGAA+GGG | 0.619120 | 6_4:-20537693 | None:intergenic |
| GTGAAGGAAGTGATTCATGC+CGG | 0.621432 | 6_4:-20537665 | None:intergenic |
| GCTCACCGAAGGCGAAAGAG+TGG | 0.621613 | 6_4:+20538909 | Msa0981270:CDS |
| GAAGATGGTCCAACACATTG+TGG | 0.623107 | 6_4:+20538429 | Msa0981270:CDS |
| ACAAGTATCGCTACCTACCG+CGG | 0.628279 | 6_4:+20536388 | Msa0981270:CDS |
| GTGCATCAGTATCCGAAATG+GGG | 0.629009 | 6_4:+20534619 | Msa0981270:CDS |
| TACTTTACCGTATCCAAAAG+GGG | 0.632931 | 6_4:-20534666 | None:intergenic |
| GTGGAAGAAGGATCAATAGG+AGG | 0.634607 | 6_4:+20539093 | Msa0981270:CDS |
| AAAGGAAGAATGCTCACCGA+AGG | 0.635301 | 6_4:+20538898 | Msa0981270:CDS |
| AGCAGAGATTATGCATATGG+TGG | 0.641975 | 6_4:+20538515 | Msa0981270:CDS |
| TGCATCAGTATCCGAAATGG+GGG | 0.642842 | 6_4:+20534620 | Msa0981270:CDS |
| GGACCATGAAGGTCCGCGGT+AGG | 0.644302 | 6_4:-20536401 | None:intergenic |
| ACACCAGTTCCATTTGCCCG+TGG | 0.651582 | 6_4:-20538582 | None:intergenic |
| CTGGTGTAGAATTGCCACCA+GGG | 0.652032 | 6_4:+20538598 | Msa0981270:CDS |
| CGGTGGGTAGAGATCTAAAG+GGG | 0.653145 | 6_4:+20536243 | Msa0981270:CDS |
| GGTAAGGAGAAAACCATATG+GGG | 0.656189 | 6_4:+20534593 | Msa0981270:intron |
| CATGGTCCAATACCACCAGT+TGG | 0.657891 | 6_4:+20536416 | Msa0981270:CDS |
| CATGATGTGAGTACCGGTGT+GGG | 0.658913 | 6_4:-20537565 | None:intergenic |
| CTAGGTTGCGAATGAGCGAA+CGG | 0.661008 | 6_4:-20539044 | None:intergenic |
| CAACCTAGCGAAATCACATG+AGG | 0.664346 | 6_4:+20539059 | Msa0981270:CDS |
| CTACTCAGAGCACCAACTGG+TGG | 0.665084 | 6_4:-20536428 | None:intergenic |
| CAAGACCAAGGCTCCCACAC+CGG | 0.667838 | 6_4:+20537552 | Msa0981270:CDS |
| CCTACATCGAAACATCTCGA+AGG | 0.669459 | 6_4:-20537694 | None:intergenic |
| CAGAGTGTTTCTCAAACTGG+AGG | 0.670619 | 6_4:+20535231 | Msa0981270:CDS |
| ACATGGCTTGCTTGTCACGG+TGG | 0.671087 | 6_4:+20538993 | Msa0981270:CDS |
| GCTCAACAACAATGTCAGCA+GGG | 0.672469 | 6_4:+20535596 | Msa0981270:CDS |
| AATTCTTGGACAAAGAAAGG+AGG | 0.672979 | 6_4:+20539613 | Msa0981270:CDS |
| TGGAAAACAGTTCAAGACCA+AGG | 0.680209 | 6_4:+20537540 | Msa0981270:CDS |
| ACCTTCACAAGCTAGACCTG+CGG | 0.682356 | 6_4:-20537746 | None:intergenic |
| GTGATGGTGCTATGACTGCA+GGG | 0.687716 | 6_4:+20536294 | Msa0981270:CDS |
| GGAATACATGCTGCAATGGG+AGG | 0.692170 | 6_4:+20537637 | Msa0981270:CDS |
| CTGGTGGTATTGGACCATGA+AGG | 0.697503 | 6_4:-20536412 | None:intergenic |
| GGCATGTCTACCTAATATGG+TGG | 0.702209 | 6_4:+20538473 | Msa0981270:CDS |
| GCATGATGTGAGTACCGGTG+TGG | 0.705105 | 6_4:-20537566 | None:intergenic |
| GGAATGCCTCTATTCCCTGG+TGG | 0.706633 | 6_4:-20538612 | None:intergenic |
| TATTGGACCATGAAGGTCCG+CGG | 0.710162 | 6_4:-20536405 | None:intergenic |
| GGTGGTTCTAACTATCAATG+GGG | 0.716011 | 6_4:+20534317 | Msa0981270:CDS |
| TGATAGTTAGAACCACCAAG+AGG | 0.716360 | 6_4:-20534311 | None:intergenic |
| AAAGCAGCAGACAAGTACCA+TGG | 0.719356 | 6_4:+20537320 | Msa0981270:CDS |
| GGTGGGTAGAGATCTAAAGG+GGG | 0.788838 | 6_4:+20536244 | Msa0981270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTGTTAAAAAAAT+AGG | - | chr6_4:20534995-20535014 | None:intergenic | 10.0% |
| !!! | TATTTTATTTATATAAGCTA+TGG | - | chr6_4:20535672-20535691 | None:intergenic | 10.0% |
| !!! | AATATAGTCAAATATTTTTT+TGG | - | chr6_4:20536027-20536046 | None:intergenic | 10.0% |
| !!! | ACTTTTTAAAATTTCAAATT+TGG | + | chr6_4:20536829-20536848 | Msa0981270:intron | 10.0% |
| !!! | ATGAGAATTTTTAAATATTT+GGG | - | chr6_4:20536855-20536874 | None:intergenic | 10.0% |
| !!! | AATGAGAATTTTTAAATATT+TGG | - | chr6_4:20536856-20536875 | None:intergenic | 10.0% |
| !! | AATACTATGTATAATATATA+AGG | + | chr6_4:20537835-20537854 | Msa0981270:intron | 10.0% |
| !!! | TGTATAATTTTTTTTTGAAA+AGG | + | chr6_4:20537867-20537886 | Msa0981270:intron | 10.0% |
| !! | AACAAAATTGAGTATAATAT+TGG | - | chr6_4:20534953-20534972 | None:intergenic | 15.0% |
| !!! | ATATTATACTCAATTTTGTT+TGG | + | chr6_4:20534953-20534972 | Msa0981270:intron | 15.0% |
| !! | TGTAGTTAAAAATTCATAAT+TGG | - | chr6_4:20535077-20535096 | None:intergenic | 15.0% |
| !! | TCATGTAATAAAATTGTTAA+TGG | + | chr6_4:20535111-20535130 | Msa0981270:intron | 15.0% |
| !!! | TAATAAAATTGTTAATGGAT+TGG | + | chr6_4:20535116-20535135 | Msa0981270:intron | 15.0% |
| !! | TTTGAAAAAATCTATGTTAT+TGG | + | chr6_4:20535392-20535411 | Msa0981270:intron | 15.0% |
| !!! | TTCTGATTTTATTTTTCTTT+TGG | + | chr6_4:20535958-20535977 | Msa0981270:intron | 15.0% |
| !! | ACATAAAAATTAGAATACTT+GGG | - | chr6_4:20536002-20536021 | None:intergenic | 15.0% |
| !! | TACATAAAAATTAGAATACT+TGG | - | chr6_4:20536003-20536022 | None:intergenic | 15.0% |
| !!! | CATAATTTGAAACTATAATA+AGG | - | chr6_4:20536675-20536694 | None:intergenic | 15.0% |
| !!! | TGCAATTTCTAAAAATATTA+GGG | - | chr6_4:20536768-20536787 | None:intergenic | 15.0% |
| !!! | TTGCAATTTCTAAAAATATT+AGG | - | chr6_4:20536769-20536788 | None:intergenic | 15.0% |
| !!! | TTGAAATTTTAAAAAGTTGA+TGG | - | chr6_4:20536826-20536845 | None:intergenic | 15.0% |
| !! | TTATAAAGTGTAAAAGTTAT+GGG | - | chr6_4:20536914-20536933 | None:intergenic | 15.0% |
| !! | TTTATAAAGTGTAAAAGTTA+TGG | - | chr6_4:20536915-20536934 | None:intergenic | 15.0% |
| !!! | TTTAGGAAAATTAGAATTTT+AGG | - | chr6_4:20537034-20537053 | None:intergenic | 15.0% |
| !! | TTTAATTATACATATCTTTC+GGG | - | chr6_4:20538220-20538239 | None:intergenic | 15.0% |
| !! | CTTTAATTATACATATCTTT+CGG | - | chr6_4:20538221-20538240 | None:intergenic | 15.0% |
| !! | AAGTGAATTTATTCTAATAA+TGG | - | chr6_4:20538769-20538788 | None:intergenic | 15.0% |
| !!! | TATATTTAAACCAACTTGTT+TGG | + | chr6_4:20534411-20534430 | Msa0981270:intron | 20.0% |
| !! | AAAAAAAAAACCAAACAAGT+TGG | - | chr6_4:20534424-20534443 | None:intergenic | 20.0% |
| !! | ATAAGAATTTCACTATAAAC+TGG | + | chr6_4:20534769-20534788 | Msa0981270:intron | 20.0% |
| !! | TAATGAACATGTAATGAATA+TGG | + | chr6_4:20534800-20534819 | Msa0981270:intron | 20.0% |
| !! | AAAAAAATAGGCAATTTCTA+CGG | - | chr6_4:20534983-20535002 | None:intergenic | 20.0% |
| !! | CAAAAAAATGTGTAAAAACA+TGG | + | chr6_4:20535005-20535024 | Msa0981270:intron | 20.0% |
| !! | TCTATATCATTTATTGATGT+AGG | + | chr6_4:20535167-20535186 | Msa0981270:intron | 20.0% |
| !! | TATATTACACTTCAATTTGA+AGG | + | chr6_4:20535834-20535853 | Msa0981270:intron | 20.0% |
| !! | AGTGTTTATTATTTACCAAT+AGG | + | chr6_4:20535918-20535937 | Msa0981270:intron | 20.0% |
| !!! | ATATAGCTTTTGCAAAATTA+CGG | - | chr6_4:20536544-20536563 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAAAGATAAAGT+TGG | + | chr6_4:20536648-20536667 | Msa0981270:intron | 20.0% |
| !!! | ATGTTTTAAAACATACACAT+TGG | + | chr6_4:20536710-20536729 | Msa0981270:intron | 20.0% |
| !!! | ATGAGGTAATTGAAAATTTT+AGG | - | chr6_4:20537051-20537070 | None:intergenic | 20.0% |
| !! | TAATAAGTGGTGAATTTATT+AGG | - | chr6_4:20537394-20537413 | None:intergenic | 20.0% |
| !! | TTAATTATACATATCTTTCG+GGG | - | chr6_4:20538219-20538238 | None:intergenic | 20.0% |
| !! | CTTTCTAATAATCTTCATAA+GGG | - | chr6_4:20538685-20538704 | None:intergenic | 20.0% |
| !! | TCTTTCTAATAATCTTCATA+AGG | - | chr6_4:20538686-20538705 | None:intergenic | 20.0% |
| !! | ATCTAATGCAATTATTTAGT+GGG | - | chr6_4:20538796-20538815 | None:intergenic | 20.0% |
| !! | AATCTAATGCAATTATTTAG+TGG | - | chr6_4:20538797-20538816 | None:intergenic | 20.0% |
| !!! | ATTTCTCTTTAAAACAGTTT+TGG | + | chr6_4:20538830-20538849 | Msa0981270:intron | 20.0% |
| !!! | TAATTTTTTTTCCTCATTGA+CGG | + | chr6_4:20539359-20539378 | Msa0981270:intron | 20.0% |
| !! | ATTAAACCAACTTGTTTGTT+TGG | + | chr6_4:20534478-20534497 | Msa0981270:intron | 25.0% |
| ! | AAAAAACCAAACAAACAAGT+TGG | - | chr6_4:20534487-20534506 | None:intergenic | 25.0% |
| ! | TTCCATCATTAAAATTGAGA+TGG | + | chr6_4:20534524-20534543 | Msa0981270:intron | 25.0% |
| ! | TCCATCATTAAAATTGAGAT+GGG | + | chr6_4:20534525-20534544 | Msa0981270:intron | 25.0% |
| ! | GTCTAATTATGAATGTATGT+AGG | + | chr6_4:20534572-20534591 | Msa0981270:intron | 25.0% |
| ! | ATTATGAATGTATGTAGGTA+AGG | + | chr6_4:20534577-20534596 | Msa0981270:intron | 25.0% |
| ! | TCTAACGATTAAGGTAAAAT+AGG | + | chr6_4:20534707-20534726 | Msa0981270:intron | 25.0% |
| ! | TTTCACTATAAACTGGTTAA+TGG | + | chr6_4:20534776-20534795 | Msa0981270:intron | 25.0% |
| ! | TGTATATTTGAACACTTGAA+AGG | - | chr6_4:20534847-20534866 | None:intergenic | 25.0% |
| ! | AATATTGTGCTCAAATACTA+GGG | + | chr6_4:20534914-20534933 | Msa0981270:intron | 25.0% |
| ! | TAAGATATCCCATATTATGA+TGG | + | chr6_4:20535038-20535057 | Msa0981270:intron | 25.0% |
| !! | AATTCATAATTGGCTCATAA+GGG | - | chr6_4:20535067-20535086 | None:intergenic | 25.0% |
| !! | AAATTCATAATTGGCTCATA+AGG | - | chr6_4:20535068-20535087 | None:intergenic | 25.0% |
| !!! | TTAGTACTAGTTGATTTTCT+AGG | + | chr6_4:20535418-20535437 | Msa0981270:intron | 25.0% |
| !! | GTCTCTAAATATTTTGTCTT+GGG | - | chr6_4:20535886-20535905 | None:intergenic | 25.0% |
| !! | TGTCTCTAAATATTTTGTCT+TGG | - | chr6_4:20535887-20535906 | None:intergenic | 25.0% |
| ! | ACTGAAAAGATATTTCCTAT+TGG | - | chr6_4:20535936-20535955 | None:intergenic | 25.0% |
| ! | GCTTTATATTAATGCACAAT+TGG | + | chr6_4:20536167-20536186 | Msa0981270:intron | 25.0% |
| ! | ACATCGAAGAAATTCATTTA+TGG | - | chr6_4:20536568-20536587 | None:intergenic | 25.0% |
| ! | TCGATGTAAAATTTACTGTT+TGG | + | chr6_4:20536581-20536600 | Msa0981270:intron | 25.0% |
| ! | TACTGTTTGGATGATAAATT+TGG | + | chr6_4:20536594-20536613 | Msa0981270:intron | 25.0% |
| !! | ATTCAATCAAAGCATTTGAA+TGG | + | chr6_4:20537008-20537027 | Msa0981270:intron | 25.0% |
| ! | ATTGAATGAGCAATAATAAG+TGG | - | chr6_4:20537407-20537426 | None:intergenic | 25.0% |
| ! | TAGTATTAAATTACACTACC+TGG | - | chr6_4:20537822-20537841 | None:intergenic | 25.0% |
| ! | TAATTATACATATCTTTCGG+GGG | - | chr6_4:20538218-20538237 | None:intergenic | 25.0% |
| ! | TGTTGTACAATATGCTATAT+GGG | - | chr6_4:20538290-20538309 | None:intergenic | 25.0% |
| ! | ATGTTGTACAATATGCTATA+TGG | - | chr6_4:20538291-20538310 | None:intergenic | 25.0% |
| !!! | TTCTTTTGATGTCACTTATA+TGG | + | chr6_4:20538452-20538471 | Msa0981270:CDS | 25.0% |
| !! | TGTTGAACTTTTTACATTGA+CGG | - | chr6_4:20539238-20539257 | None:intergenic | 25.0% |
| !! | GATCATATTGTTTTGCAGTT+TGG | - | chr6_4:20534277-20534296 | None:intergenic | 30.0% |
| TTCAACAAAAAAACCTAACC+TGG | - | chr6_4:20534376-20534395 | None:intergenic | 30.0% | |
| !! | TCCCATCTCAATTTTAATGA+TGG | - | chr6_4:20534529-20534548 | None:intergenic | 30.0% |
| ATACTTTACCGTATCCAAAA+GGG | - | chr6_4:20534670-20534689 | None:intergenic | 30.0% | |
| TATGAAGACTCTAACGATTA+AGG | + | chr6_4:20534698-20534717 | Msa0981270:CDS | 30.0% | |
| CAATATTGTGCTCAAATACT+AGG | + | chr6_4:20534913-20534932 | Msa0981270:intron | 30.0% | |
| ATATTGTGCTCAAATACTAG+GGG | + | chr6_4:20534915-20534934 | Msa0981270:intron | 30.0% | |
| ! | ATTCATAATTGGCTCATAAG+GGG | - | chr6_4:20535066-20535085 | None:intergenic | 30.0% |
| ! | AGCATTGAAAACATAATGGA+GGG | - | chr6_4:20535298-20535317 | None:intergenic | 30.0% |
| !! | TAGGAGCATTGAAAACATAA+TGG | - | chr6_4:20535302-20535321 | None:intergenic | 30.0% |
| TCCTATAGACAAAATCTTGT+GGG | + | chr6_4:20535317-20535336 | Msa0981270:CDS | 30.0% | |
| TATCCACATAAAATACTCAC+TGG | + | chr6_4:20535475-20535494 | Msa0981270:CDS | 30.0% | |
| ATAAAATACTCACTGGTAGA+AGG | + | chr6_4:20535482-20535501 | Msa0981270:CDS | 30.0% | |
| !! | GAGAGTGAATTTGATAGTTT+TGG | + | chr6_4:20535562-20535581 | Msa0981270:CDS | 30.0% |
| TCACGAAAGCTTAAATTGTT+AGG | + | chr6_4:20536092-20536111 | Msa0981270:intron | 30.0% | |
| ! | TGACATTTTACTCCAAAAAC+AGG | + | chr6_4:20536215-20536234 | Msa0981270:intron | 30.0% |
| ! | TTTTACTCCAAAAACAGGAA+TGG | + | chr6_4:20536220-20536239 | Msa0981270:intron | 30.0% |
| GTGTAAAAGTTATGGGATAA+AGG | - | chr6_4:20536907-20536926 | None:intergenic | 30.0% | |
| CTTCATTCTTAAACTTTGCT+CGG | - | chr6_4:20536943-20536962 | None:intergenic | 30.0% | |
| TCAACACTATTTGAAGAACT+TGG | + | chr6_4:20537155-20537174 | Msa0981270:CDS | 30.0% | |
| !! | ACTCTTAACTTGTTTGAGAA+TGG | - | chr6_4:20537231-20537250 | None:intergenic | 30.0% |
| ! | TATTCCAACAATGCTTTTGT+CGG | - | chr6_4:20537623-20537642 | None:intergenic | 30.0% |
| GGGAAGAAAAAAATACAACA+AGG | + | chr6_4:20537941-20537960 | Msa0981270:intron | 30.0% | |
| !!! | ATTGGTTTTGGGTTGTTTTT+TGG | - | chr6_4:20537995-20538014 | None:intergenic | 30.0% |
| AAACAACCCAAAACCAATAA+AGG | + | chr6_4:20537997-20538016 | Msa0981270:intron | 30.0% | |
| TACAATATGCTATATGGGAT+CGG | - | chr6_4:20538285-20538304 | None:intergenic | 30.0% | |
| TATATTTCATGTCCATTCGA+AGG | + | chr6_4:20538338-20538357 | Msa0981270:intron | 30.0% | |
| TTGTCGATAACAAATCTTAC+TGG | - | chr6_4:20538393-20538412 | None:intergenic | 30.0% | |
| ! | ATAAAGTATTCGTGCAGAAA+TGG | - | chr6_4:20538746-20538765 | None:intergenic | 30.0% |
| !! | GTTTTGACATGTTAACAGAT+AGG | + | chr6_4:20538874-20538893 | Msa0981270:intron | 30.0% |
| ACATGTTAACAGATAGGAAA+AGG | + | chr6_4:20538880-20538899 | Msa0981270:intron | 30.0% | |
| TCTTCTTGATGGAAAATTGA+AGG | + | chr6_4:20539155-20539174 | Msa0981270:CDS | 30.0% | |
| TTGTGTTTCATATTATCCAG+TGG | + | chr6_4:20539486-20539505 | Msa0981270:intron | 30.0% | |
| TAAATATCTGGAAACACCAT+TGG | - | chr6_4:20539515-20539534 | None:intergenic | 30.0% | |
| ! | GCAACAGTTTTCAAAATTCT+TGG | + | chr6_4:20539599-20539618 | Msa0981270:CDS | 30.0% |
| CAAAATTCTTGGACAAAGAA+AGG | + | chr6_4:20539610-20539629 | Msa0981270:CDS | 30.0% | |
| !! | TTGGTGGTTCTAACTATCAA+TGG | + | chr6_4:20534315-20534334 | Msa0981270:CDS | 35.0% |
| !! | TGGTGGTTCTAACTATCAAT+GGG | + | chr6_4:20534316-20534335 | Msa0981270:CDS | 35.0% |
| TAGGTAAGGAGAAAACCATA+TGG | + | chr6_4:20534591-20534610 | Msa0981270:intron | 35.0% | |
| AGGTAAGGAGAAAACCATAT+GGG | + | chr6_4:20534592-20534611 | Msa0981270:intron | 35.0% | |
| TACTTTACCGTATCCAAAAG+GGG | - | chr6_4:20534669-20534688 | None:intergenic | 35.0% | |
| GATACTTTACCGTATCCAAA+AGG | - | chr6_4:20534671-20534690 | None:intergenic | 35.0% | |
| GTTAGAGTCTTCATATCTTC+GGG | - | chr6_4:20534693-20534712 | None:intergenic | 35.0% | |
| CGTTAGAGTCTTCATATCTT+CGG | - | chr6_4:20534694-20534713 | None:intergenic | 35.0% | |
| GAACATGTAATGAATATGGC+AGG | + | chr6_4:20534804-20534823 | Msa0981270:intron | 35.0% | |
| !! | AAGGGGTACCATCATAATAT+GGG | - | chr6_4:20535049-20535068 | None:intergenic | 35.0% |
| !! | TAAGGGGTACCATCATAATA+TGG | - | chr6_4:20535050-20535069 | None:intergenic | 35.0% |
| GTAGGAACTAAAACAACTTG+CGG | + | chr6_4:20535185-20535204 | Msa0981270:intron | 35.0% | |
| TAGGAACTAAAACAACTTGC+GGG | + | chr6_4:20535186-20535205 | Msa0981270:intron | 35.0% | |
| !! | GAGCATTGAAAACATAATGG+AGG | - | chr6_4:20535299-20535318 | None:intergenic | 35.0% |
| CTCCTATAGACAAAATCTTG+TGG | + | chr6_4:20535316-20535335 | Msa0981270:CDS | 35.0% | |
| ! | TCCCACAAGATTTTGTCTAT+AGG | - | chr6_4:20535321-20535340 | None:intergenic | 35.0% |
| ! | TAGGAGTATAATCAACCTGA+TGG | - | chr6_4:20535350-20535369 | None:intergenic | 35.0% |
| ! | CTACCAGTGAGTATTTTATG+TGG | - | chr6_4:20535481-20535500 | None:intergenic | 35.0% |
| GGAATAAGATGCATACATTG+AGG | + | chr6_4:20535503-20535522 | Msa0981270:CDS | 35.0% | |
| !!! | GAATTTGATAGTTTTGGCAC+TGG | + | chr6_4:20535568-20535587 | Msa0981270:CDS | 35.0% |
| !!! | GTTTCTAGCCAGAAATTTTC+AGG | + | chr6_4:20535646-20535665 | Msa0981270:intron | 35.0% |
| AATTTAAGCTTTCGTGAGAG+AGG | - | chr6_4:20536089-20536108 | None:intergenic | 35.0% | |
| TGCACAATTGGATTTGTGAT+CGG | + | chr6_4:20536179-20536198 | Msa0981270:intron | 35.0% | |
| AATAATGTGGTCACCATCAT+CGG | + | chr6_4:20536272-20536291 | Msa0981270:CDS | 35.0% | |
| ! | TTTGAGGCAATGAATAATGC+CGG | + | chr6_4:20536323-20536342 | Msa0981270:CDS | 35.0% |
| GAGATTTGACTGAAGATATC+CGG | - | chr6_4:20536345-20536364 | None:intergenic | 35.0% | |
| AACATACTTACCTTGACAAG+AGG | - | chr6_4:20536482-20536501 | None:intergenic | 35.0% | |
| TCTTGTCAAGGTAAGTATGT+TGG | + | chr6_4:20536481-20536500 | Msa0981270:intron | 35.0% | |
| TTACCTCATTCAAGTACACT+CGG | + | chr6_4:20537062-20537081 | Msa0981270:intron | 35.0% | |
| GTGAATATTGCTAAGGTTGA+TGG | + | chr6_4:20537101-20537120 | Msa0981270:intron | 35.0% | |
| GTTAAGAGTCCTAAGAAAAC+TGG | + | chr6_4:20537242-20537261 | Msa0981270:CDS | 35.0% | |
| ATCCATGTTGTCACTGAAAA+AGG | + | chr6_4:20537275-20537294 | Msa0981270:CDS | 35.0% | |
| TGACTTTCTACTTTCATGAC+AGG | + | chr6_4:20537467-20537486 | Msa0981270:intron | 35.0% | |
| !!! | CTAACATGGTTTAGTTTTGC+AGG | + | chr6_4:20537493-20537512 | Msa0981270:intron | 35.0% |
| GACGAGTAAATTGCACAAAA+AGG | - | chr6_4:20537778-20537797 | None:intergenic | 35.0% | |
| !!! | TTTTGGGTTGTTTTTTGGTG+TGG | - | chr6_4:20537990-20538009 | None:intergenic | 35.0% |
| !!! | TTTTGGGTTTTTCGGTTTTG+AGG | - | chr6_4:20538074-20538093 | None:intergenic | 35.0% |
| AAACCGAAAAACCCAAAAAC+AGG | + | chr6_4:20538076-20538095 | Msa0981270:intron | 35.0% | |
| AGTGTCTTTCAGTTCTGTTT+GGG | - | chr6_4:20538195-20538214 | None:intergenic | 35.0% | |
| ! | AAAGCTCATTTCTTTTCACG+TGG | + | chr6_4:20538237-20538256 | Msa0981270:intron | 35.0% |
| ! | AAGCTCATTTCTTTTCACGT+GGG | + | chr6_4:20538238-20538257 | Msa0981270:intron | 35.0% |
| ACAATATGCTATATGGGATC+GGG | - | chr6_4:20538284-20538303 | None:intergenic | 35.0% | |
| !! | AGATTTGTTATCGACAAAGC+TGG | + | chr6_4:20538396-20538415 | Msa0981270:CDS | 35.0% |
| TCAAAAGAACCACAATGTGT+TGG | - | chr6_4:20538441-20538460 | None:intergenic | 35.0% | |
| TATGGCATGTCTACCTAATA+TGG | + | chr6_4:20538470-20538489 | Msa0981270:CDS | 35.0% | |
| TGCATTAGATTGTGTATTGC+TGG | + | chr6_4:20538806-20538825 | Msa0981270:intron | 35.0% | |
| CTAAAGTCGCACAAATGATT+GGG | - | chr6_4:20539277-20539296 | None:intergenic | 35.0% | |
| ! | TCTAAAGTCGCACAAATGAT+TGG | - | chr6_4:20539278-20539297 | None:intergenic | 35.0% |
| !!! | TTTTTTTTCCTCATTGACGG+CGG | + | chr6_4:20539362-20539381 | Msa0981270:intron | 35.0% |
| TGTTTCATATTATCCAGTGG+AGG | + | chr6_4:20539489-20539508 | Msa0981270:intron | 35.0% | |
| CCATGGTCGATATAAATATC+TGG | - | chr6_4:20539527-20539546 | None:intergenic | 35.0% | |
| CCAGATATTTATATCGACCA+TGG | + | chr6_4:20539524-20539543 | Msa0981270:CDS | 35.0% | |
| ! | AAAACTGTTGCTGCTATTTG+AGG | - | chr6_4:20539590-20539609 | None:intergenic | 35.0% |
| AATTCTTGGACAAAGAAAGG+AGG | + | chr6_4:20539613-20539632 | Msa0981270:CDS | 35.0% | |
| !! | GTTTTGCAGTTTGGCTCAAA+AGG | - | chr6_4:20534268-20534287 | None:intergenic | 40.0% |
| TGATAGTTAGAACCACCAAG+AGG | - | chr6_4:20534314-20534333 | None:intergenic | 40.0% | |
| !! | GGTGGTTCTAACTATCAATG+GGG | + | chr6_4:20534317-20534336 | Msa0981270:CDS | 40.0% |
| GGTAAGGAGAAAACCATATG+GGG | + | chr6_4:20534593-20534612 | Msa0981270:intron | 40.0% | |
| TTGTGCATCAGTATCCGAAA+TGG | + | chr6_4:20534617-20534636 | Msa0981270:CDS | 40.0% | |
| TGTGCATCAGTATCCGAAAT+GGG | + | chr6_4:20534618-20534637 | Msa0981270:CDS | 40.0% | |
| ! | ATCCAGAGTGTTTCTCAAAC+TGG | + | chr6_4:20535228-20535247 | Msa0981270:CDS | 40.0% |
| GACAAAATCTTGTGGGATGT+TGG | + | chr6_4:20535324-20535343 | Msa0981270:CDS | 40.0% | |
| ! | CTCTCTTGTGTGAATTTTGC+AGG | + | chr6_4:20535450-20535469 | Msa0981270:intron | 40.0% |
| CATACATTGAGGCAGAAAGA+TGG | + | chr6_4:20535514-20535533 | Msa0981270:CDS | 40.0% | |
| !! | AGGCAGAAAGATGGATTAAG+TGG | + | chr6_4:20535523-20535542 | Msa0981270:CDS | 40.0% |
| !! | GGCAGAAAGATGGATTAAGT+GGG | + | chr6_4:20535524-20535543 | Msa0981270:CDS | 40.0% |
| AGCTATGGCCTGAAAATTTC+TGG | - | chr6_4:20535657-20535676 | None:intergenic | 40.0% | |
| TACTCCAAAAACAGGAATGG+CGG | + | chr6_4:20536223-20536242 | Msa0981270:intron | 40.0% | |
| AAAGGGGGACAACAATAATG+TGG | + | chr6_4:20536259-20536278 | Msa0981270:CDS | 40.0% | |
| ATCAGACAAACCTCTTGTCA+AGG | + | chr6_4:20536469-20536488 | Msa0981270:CDS | 40.0% | |
| ! | GGTAAGTATGTTGGCTATCA+TGG | + | chr6_4:20536490-20536509 | Msa0981270:intron | 40.0% |
| TTTCCGAGTGTACTTGAATG+AGG | - | chr6_4:20537068-20537087 | None:intergenic | 40.0% | |
| CACAGCTGTGAATATTGCTA+AGG | + | chr6_4:20537094-20537113 | Msa0981270:intron | 40.0% | |
| !! | AAGGTTGATGGATGTGATCA+TGG | + | chr6_4:20537113-20537132 | Msa0981270:intron | 40.0% |
| GAACTTGGACTTGACTACAT+TGG | + | chr6_4:20537170-20537189 | Msa0981270:CDS | 40.0% | |
| TCAATGCTATGACCATCAAC+AGG | - | chr6_4:20537197-20537216 | None:intergenic | 40.0% | |
| ! | AGTACAGGACCAGTTTTCTT+AGG | - | chr6_4:20537254-20537273 | None:intergenic | 40.0% |
| !! | GTGACAACATGGATTAGTAC+AGG | - | chr6_4:20537269-20537288 | None:intergenic | 40.0% |
| !!! | TGCCTTTTTCAGTGACAACA+TGG | - | chr6_4:20537280-20537299 | None:intergenic | 40.0% |
| ! | GTTGTCACTGAAAAAGGCAT+AGG | + | chr6_4:20537281-20537300 | Msa0981270:CDS | 40.0% |
| TTGTAATGCCTGTTGTACCA+TGG | - | chr6_4:20537340-20537359 | None:intergenic | 40.0% | |
| TTCATGACAGGCATCTAACA+TGG | + | chr6_4:20537479-20537498 | Msa0981270:intron | 40.0% | |
| ! | TTGAACTGTTTTCCAGTTGC+AGG | - | chr6_4:20537535-20537554 | None:intergenic | 40.0% |
| TGGAAAACAGTTCAAGACCA+AGG | + | chr6_4:20537540-20537559 | Msa0981270:CDS | 40.0% | |
| TGTTGGAATACATGCTGCAA+TGG | + | chr6_4:20537633-20537652 | Msa0981270:CDS | 40.0% | |
| GTTGGAATACATGCTGCAAT+GGG | + | chr6_4:20537634-20537653 | Msa0981270:CDS | 40.0% | |
| CTACATCGAAACATCTCGAA+GGG | - | chr6_4:20537696-20537715 | None:intergenic | 40.0% | |
| CTTCGAGATGTTTCGATGTA+GGG | + | chr6_4:20537695-20537714 | Msa0981270:CDS | 40.0% | |
| !! | AACAAGGTGCCGCATATATA+CGG | + | chr6_4:20537957-20537976 | Msa0981270:intron | 40.0% |
| !!! | TCGAGGCCTTTATTGGTTTT+GGG | - | chr6_4:20538006-20538025 | None:intergenic | 40.0% |
| !!! | TTCGAGGCCTTTATTGGTTT+TGG | - | chr6_4:20538007-20538026 | None:intergenic | 40.0% |
| !!! | CAGCCTGTTTTTGGGTTTTT+CGG | - | chr6_4:20538082-20538101 | None:intergenic | 40.0% |
| !! | GTTAGGTTGTGTTGCTGTTT+CGG | - | chr6_4:20538155-20538174 | None:intergenic | 40.0% |
| GAGTGTCTTTCAGTTCTGTT+TGG | - | chr6_4:20538196-20538215 | None:intergenic | 40.0% | |
| ATTTCATGTCCATTCGAAGG+TGG | + | chr6_4:20538341-20538360 | Msa0981270:intron | 40.0% | |
| ATCGACAAAGCTGGATTTGT+TGG | + | chr6_4:20538405-20538424 | Msa0981270:CDS | 40.0% | |
| ! | TCTACCTAATATGGTGGTGA+TGG | + | chr6_4:20538479-20538498 | Msa0981270:CDS | 40.0% |
| ATAATCTCTGCTTCGTCAGA+AGG | - | chr6_4:20538507-20538526 | None:intergenic | 40.0% | |
| CGAAGCAGAGATTATGCATA+TGG | + | chr6_4:20538512-20538531 | Msa0981270:CDS | 40.0% | |
| AGCAGAGATTATGCATATGG+TGG | + | chr6_4:20538515-20538534 | Msa0981270:CDS | 40.0% | |
| ATACTCTAACTCACCTCAAG+AGG | - | chr6_4:20538636-20538655 | None:intergenic | 40.0% | |
| AAACCTCATGTGATTTCGCT+AGG | - | chr6_4:20539065-20539084 | None:intergenic | 40.0% | |
| !! | ACATGAGGTTTTGATCACTG+TGG | + | chr6_4:20539074-20539093 | Msa0981270:CDS | 40.0% |
| !! | GTTTTGATCACTGTGGAAGA+AGG | + | chr6_4:20539081-20539100 | Msa0981270:CDS | 40.0% |
| ACTGTGGAAGAAGGATCAAT+AGG | + | chr6_4:20539090-20539109 | Msa0981270:CDS | 40.0% | |
| GAAGGATCAATAGGAGGATT+TGG | + | chr6_4:20539099-20539118 | Msa0981270:CDS | 40.0% | |
| TTCTCATGTTGCTCAGTTCA+TGG | + | chr6_4:20539122-20539141 | Msa0981270:CDS | 40.0% | |
| TCCATCAAGAAGACCATCAA+GGG | - | chr6_4:20539148-20539167 | None:intergenic | 40.0% | |
| TTCCATCAAGAAGACCATCA+AGG | - | chr6_4:20539149-20539168 | None:intergenic | 40.0% | |
| ! | CAGTTTGGCTCAAAAGGACA+GGG | - | chr6_4:20534262-20534281 | None:intergenic | 45.0% |
| CTGAAACGATCAACTCCTCT+TGG | + | chr6_4:20534296-20534315 | Msa0981270:CDS | 45.0% | |
| AAACGATCAACTCCTCTTGG+TGG | + | chr6_4:20534299-20534318 | Msa0981270:CDS | 45.0% | |
| AACCTAACCTGGTTGAGTCT+GGG | - | chr6_4:20534365-20534384 | None:intergenic | 45.0% | |
| AAACCTAACCTGGTTGAGTC+TGG | - | chr6_4:20534366-20534385 | None:intergenic | 45.0% | |
| ACTGATGCACAAACCCCATA+TGG | - | chr6_4:20534609-20534628 | None:intergenic | 45.0% | |
| GTGCATCAGTATCCGAAATG+GGG | + | chr6_4:20534619-20534638 | Msa0981270:CDS | 45.0% | |
| TGCATCAGTATCCGAAATGG+GGG | + | chr6_4:20534620-20534639 | Msa0981270:CDS | 45.0% | |
| CTTATACTCCTCCCCCATTT+CGG | - | chr6_4:20534634-20534653 | None:intergenic | 45.0% | |
| ! | GAAGAAACCTACACCCCTTT+TGG | + | chr6_4:20534653-20534672 | Msa0981270:CDS | 45.0% |
| ! | ACCTACACCCCTTTTGGATA+CGG | + | chr6_4:20534659-20534678 | Msa0981270:CDS | 45.0% |
| CTCCAGTTTGAGAAACACTC+TGG | - | chr6_4:20535233-20535252 | None:intergenic | 45.0% | |
| ! | CAGAGTGTTTCTCAAACTGG+AGG | + | chr6_4:20535231-20535250 | Msa0981270:CDS | 45.0% |
| TCTCAAACTGGAGGACATCT+AGG | + | chr6_4:20535240-20535259 | Msa0981270:CDS | 45.0% | |
| ! | AGGACATCTAGGATCGAATC+TGG | + | chr6_4:20535251-20535270 | Msa0981270:CDS | 45.0% |
| ! | GGACATCTAGGATCGAATCT+GGG | + | chr6_4:20535252-20535271 | Msa0981270:CDS | 45.0% |
| AGCTCAACAACAATGTCAGC+AGG | + | chr6_4:20535595-20535614 | Msa0981270:CDS | 45.0% | |
| GCTCAACAACAATGTCAGCA+GGG | + | chr6_4:20535596-20535615 | Msa0981270:CDS | 45.0% | |
| AGCTCAGTGTGATTTCGACA+AGG | - | chr6_4:20536520-20536539 | None:intergenic | 45.0% | |
| GGATGTGATCATGGCATGAT+TGG | + | chr6_4:20537122-20537141 | Msa0981270:CDS | 45.0% | |
| TGTGATCATGGCATGATTGG+TGG | + | chr6_4:20537125-20537144 | Msa0981270:CDS | 45.0% | |
| GACTACATTGGTCCTGTTGA+TGG | + | chr6_4:20537182-20537201 | Msa0981270:CDS | 45.0% | |
| AAAGCAGCAGACAAGTACCA+TGG | + | chr6_4:20537320-20537339 | Msa0981270:CDS | 45.0% | |
| GACAAGTACCATGGTACAAC+AGG | + | chr6_4:20537329-20537348 | Msa0981270:intron | 45.0% | |
| GCTAAGTTTGATCCTGCAAC+TGG | + | chr6_4:20537520-20537539 | Msa0981270:CDS | 45.0% | |
| GCAAAGCATGATGTGAGTAC+CGG | - | chr6_4:20537574-20537593 | None:intergenic | 45.0% | |
| GGTACTCACATCATGCTTTG+CGG | + | chr6_4:20537573-20537592 | Msa0981270:CDS | 45.0% | |
| !! | GAAGCCGACAAAAGCATTGT+TGG | + | chr6_4:20537616-20537635 | Msa0981270:CDS | 45.0% |
| GTGAAGGAAGTGATTCATGC+CGG | - | chr6_4:20537668-20537687 | None:intergenic | 45.0% | |
| CGAAACATCTCGAAGGGAAT+CGG | - | chr6_4:20537690-20537709 | None:intergenic | 45.0% | |
| CCTACATCGAAACATCTCGA+AGG | - | chr6_4:20537697-20537716 | None:intergenic | 45.0% | |
| CCTTCGAGATGTTTCGATGT+AGG | + | chr6_4:20537694-20537713 | Msa0981270:CDS | 45.0% | |
| GTCATAAGCTCTCTGCAAGA+AGG | - | chr6_4:20537800-20537819 | None:intergenic | 45.0% | |
| GGTGGTGTTCCGTATATATG+CGG | - | chr6_4:20537969-20537988 | None:intergenic | 45.0% | |
| !!! | TGGGTTGTTTTTTGGTGTGG+TGG | - | chr6_4:20537987-20538006 | None:intergenic | 45.0% |
| TCGTTGTTCGAGGCCTTTAT+TGG | - | chr6_4:20538013-20538032 | None:intergenic | 45.0% | |
| AATAAAGGCCTCGAACAACG+AGG | + | chr6_4:20538012-20538031 | Msa0981270:intron | 45.0% | |
| !!! | TGGGTTTTTCGGTTTTGAGG+CGG | - | chr6_4:20538071-20538090 | None:intergenic | 45.0% |
| !! | TGTTTCGGTCTATTTCTGCC+TGG | - | chr6_4:20538140-20538159 | None:intergenic | 45.0% |
| AACACAACCTAACAGCACAG+TGG | + | chr6_4:20538162-20538181 | Msa0981270:intron | 45.0% | |
| !! | GCTGGATTTGTTGGAGAAGA+TGG | + | chr6_4:20538414-20538433 | Msa0981270:CDS | 45.0% |
| GAAGATGGTCCAACACATTG+TGG | + | chr6_4:20538429-20538448 | Msa0981270:CDS | 45.0% | |
| GGCATGTCTACCTAATATGG+TGG | + | chr6_4:20538473-20538492 | Msa0981270:CDS | 45.0% | |
| ACAGCTAGGTCGATCGTTAA+TGG | - | chr6_4:20538553-20538572 | None:intergenic | 45.0% | |
| ! | CTAGCTGTTTCCGATTTCCA+CGG | + | chr6_4:20538565-20538584 | Msa0981270:CDS | 45.0% |
| ! | TAGCTGTTTCCGATTTCCAC+GGG | + | chr6_4:20538566-20538585 | Msa0981270:CDS | 45.0% |
| TTCCATTTGCCCGTGGAAAT+CGG | - | chr6_4:20538578-20538597 | None:intergenic | 45.0% | |
| !! | GAATAGAGGCATTCCTCTTG+AGG | + | chr6_4:20538620-20538639 | Msa0981270:CDS | 45.0% |
| AAAGGAAGAATGCTCACCGA+AGG | + | chr6_4:20538898-20538917 | Msa0981270:CDS | 45.0% | |
| GCCTCAATATTGCAGCAACA+TGG | + | chr6_4:20538976-20538995 | Msa0981270:CDS | 45.0% | |
| GCCATGTTGCTGCAATATTG+AGG | - | chr6_4:20538980-20538999 | None:intergenic | 45.0% | |
| CAACCTAGCGAAATCACATG+AGG | + | chr6_4:20539059-20539078 | Msa0981270:CDS | 45.0% | |
| GTGGAAGAAGGATCAATAGG+AGG | + | chr6_4:20539093-20539112 | Msa0981270:CDS | 45.0% | |
| TATTATCCAGTGGAGGCCAA+TGG | + | chr6_4:20539496-20539515 | Msa0981270:intron | 45.0% | |
| !! | ACAAAGAAAGGAGGCACTAG+AGG | + | chr6_4:20539622-20539641 | Msa0981270:CDS | 45.0% |
| !!! | TACATTATATATTTTTTTAA+AGG | + | chr6_4:20534863-20534882 | Msa0981270:intron | 5.0% |
| !! | TTAATAATAATAACAATAAT+AGG | - | chr6_4:20535369-20535388 | None:intergenic | 5.0% |
| !!! | TTTTCAAAATATTAAAAATA+GGG | - | chr6_4:20536798-20536817 | None:intergenic | 5.0% |
| !!! | ATTTTCAAAATATTAAAAAT+AGG | - | chr6_4:20536799-20536818 | None:intergenic | 5.0% |
| !!! | ATTTTTAATATTTTGAAAAT+TGG | + | chr6_4:20536799-20536818 | Msa0981270:intron | 5.0% |
| ! | GCAGTTTGGCTCAAAAGGAC+AGG | - | chr6_4:20534263-20534282 | None:intergenic | 50.0% |
| TTGCAATCCCAGACTCAACC+AGG | + | chr6_4:20534355-20534374 | Msa0981270:CDS | 50.0% | |
| ATCCCAGACTCAACCAGGTT+AGG | + | chr6_4:20534360-20534379 | Msa0981270:intron | 50.0% | |
| ATCAGTATCCGAAATGGGGG+AGG | + | chr6_4:20534623-20534642 | Msa0981270:CDS | 50.0% | |
| ! | ACCGTATCCAAAAGGGGTGT+AGG | - | chr6_4:20534663-20534682 | None:intergenic | 50.0% |
| ACAACAATGTCAGCAGGGCT+AGG | + | chr6_4:20535601-20535620 | Msa0981270:CDS | 50.0% | |
| TCCAAAAACAGGAATGGCGG+TGG | + | chr6_4:20536226-20536245 | Msa0981270:intron | 50.0% | |
| CCAAAAACAGGAATGGCGGT+GGG | + | chr6_4:20536227-20536246 | Msa0981270:intron | 50.0% | |
| GCGGTGGGTAGAGATCTAAA+GGG | + | chr6_4:20536242-20536261 | Msa0981270:CDS | 50.0% | |
| CGGTGGGTAGAGATCTAAAG+GGG | + | chr6_4:20536243-20536262 | Msa0981270:CDS | 50.0% | |
| GGTGGGTAGAGATCTAAAGG+GGG | + | chr6_4:20536244-20536263 | Msa0981270:CDS | 50.0% | |
| CATAGCACCATCACCGATGA+TGG | - | chr6_4:20536288-20536307 | None:intergenic | 50.0% | |
| !! | GTGATGGTGCTATGACTGCA+GGG | + | chr6_4:20536294-20536313 | Msa0981270:CDS | 50.0% |
| ! | ACAAGTATCGCTACCTACCG+CGG | + | chr6_4:20536388-20536407 | Msa0981270:CDS | 50.0% |
| TATTGGACCATGAAGGTCCG+CGG | - | chr6_4:20536408-20536427 | None:intergenic | 50.0% | |
| ! | CTGGTGGTATTGGACCATGA+AGG | - | chr6_4:20536415-20536434 | None:intergenic | 50.0% |
| CATGGTCCAATACCACCAGT+TGG | + | chr6_4:20536416-20536435 | Msa0981270:CDS | 50.0% | |
| ! | AGAGCACCAACTGGTGGTAT+TGG | - | chr6_4:20536425-20536444 | None:intergenic | 50.0% |
| ! | CATCTACTCAGAGCACCAAC+TGG | - | chr6_4:20536434-20536453 | None:intergenic | 50.0% |
| CTCTGAGTAGATGTCTCAGC+AGG | + | chr6_4:20536441-20536460 | Msa0981270:CDS | 50.0% | |
| ! | CATGGCATGATTGGTGGTTC+TGG | + | chr6_4:20537131-20537150 | Msa0981270:CDS | 50.0% |
| !! | CATGATGTGAGTACCGGTGT+GGG | - | chr6_4:20537568-20537587 | None:intergenic | 50.0% |
| GGAATACATGCTGCAATGGG+AGG | + | chr6_4:20537637-20537656 | Msa0981270:CDS | 50.0% | |
| ATACATGCTGCAATGGGAGG+TGG | + | chr6_4:20537640-20537659 | Msa0981270:CDS | 50.0% | |
| ATCTCGAAGGGAATCGGTGA+AGG | - | chr6_4:20537684-20537703 | None:intergenic | 50.0% | |
| ACCTTCACAAGCTAGACCTG+CGG | - | chr6_4:20537749-20537768 | None:intergenic | 50.0% | |
| CTTGCAGAGAGCTTATGACC+AGG | + | chr6_4:20537801-20537820 | Msa0981270:CDS | 50.0% | |
| CAAGACGCACAAAGAACTCG+TGG | + | chr6_4:20537916-20537935 | Msa0981270:intron | 50.0% | |
| ACGCACAAAGAACTCGTGGT+AGG | + | chr6_4:20537920-20537939 | Msa0981270:intron | 50.0% | |
| CGCACAAAGAACTCGTGGTA+GGG | + | chr6_4:20537921-20537940 | Msa0981270:intron | 50.0% | |
| TATTCCAGCCTCGTTGTTCG+AGG | - | chr6_4:20538023-20538042 | None:intergenic | 50.0% | |
| !!! | TTTTGAGGCGGTGGTATGCT+TGG | - | chr6_4:20538059-20538078 | None:intergenic | 50.0% |
| !!! | GTTTTTCGGTTTTGAGGCGG+TGG | - | chr6_4:20538068-20538087 | None:intergenic | 50.0% |
| !! | CTGTGCAGCAGCCTGTTTTT+GGG | - | chr6_4:20538090-20538109 | None:intergenic | 50.0% |
| !!! | GCGTGCTGCTTCTGTTGTTT+TGG | - | chr6_4:20538113-20538132 | None:intergenic | 50.0% |
| AACAACAGAAGCAGCACGCA+AGG | + | chr6_4:20538114-20538133 | Msa0981270:intron | 50.0% | |
| TATGGGATCGGGTGCATTAG+TGG | - | chr6_4:20538273-20538292 | None:intergenic | 50.0% | |
| CATCATGCACCACCTTCGAA+TGG | - | chr6_4:20538353-20538372 | None:intergenic | 50.0% | |
| TTCGAAGGTGGTGCATGATG+TGG | + | chr6_4:20538353-20538372 | Msa0981270:intron | 50.0% | |
| GGAGCCATCACCACCATATT+AGG | - | chr6_4:20538486-20538505 | None:intergenic | 50.0% | |
| CGTGGAAATCGGAAACAGCT+AGG | - | chr6_4:20538567-20538586 | None:intergenic | 50.0% | |
| TTCCGATTTCCACGGGCAAA+TGG | + | chr6_4:20538573-20538592 | Msa0981270:CDS | 50.0% | |
| TTTCCACGGGCAAATGGAAC+TGG | + | chr6_4:20538579-20538598 | Msa0981270:CDS | 50.0% | |
| ACTGGTGTAGAATTGCCACC+AGG | + | chr6_4:20538597-20538616 | Msa0981270:CDS | 50.0% | |
| CTGGTGTAGAATTGCCACCA+GGG | + | chr6_4:20538598-20538617 | Msa0981270:CDS | 50.0% | |
| GAATTGCCACCAGGGAATAG+AGG | + | chr6_4:20538606-20538625 | Msa0981270:CDS | 50.0% | |
| AGAGGAATGCCTCTATTCCC+TGG | - | chr6_4:20538618-20538637 | None:intergenic | 50.0% | |
| TGCTGTCCCAAAGCCCAAAA+GGG | - | chr6_4:20538935-20538954 | None:intergenic | 50.0% | |
| !! | GCAACATGGCTTGCTTGTCA+CGG | + | chr6_4:20538990-20539009 | Msa0981270:CDS | 50.0% |
| TGCACGTTTCTGCAAGCCAT+TGG | + | chr6_4:20539020-20539039 | Msa0981270:CDS | 50.0% | |
| CTAGGTTGCGAATGAGCGAA+CGG | - | chr6_4:20539047-20539066 | None:intergenic | 50.0% | |
| ! | GCCCTTGATGGTCTTCTTGA+TGG | + | chr6_4:20539144-20539163 | Msa0981270:CDS | 50.0% |
| ATTGCTCAGCTGGTGATCCA+TGG | - | chr6_4:20539544-20539563 | None:intergenic | 50.0% | |
| GCAACAGCTAATTGCTCAGC+TGG | - | chr6_4:20539554-20539573 | None:intergenic | 50.0% | |
| GCTGAGCAATTAGCTGTTGC+TGG | + | chr6_4:20539554-20539573 | Msa0981270:CDS | 50.0% | |
| CTTGTGGGATGTTGGCCATC+AGG | + | chr6_4:20535332-20535351 | Msa0981270:CDS | 55.0% | |
| ! | CCCACCGCCATTCCTGTTTT+TGG | - | chr6_4:20536230-20536249 | None:intergenic | 55.0% |
| GGCGGTGGGTAGAGATCTAA+AGG | + | chr6_4:20536241-20536260 | Msa0981270:CDS | 55.0% | |
| GTGGTCACCATCATCGGTGA+TGG | + | chr6_4:20536278-20536297 | Msa0981270:CDS | 55.0% | |
| !! | GGTGATGGTGCTATGACTGC+AGG | + | chr6_4:20536293-20536312 | Msa0981270:CDS | 55.0% |
| ! | CTACTCAGAGCACCAACTGG+TGG | - | chr6_4:20536431-20536450 | None:intergenic | 55.0% |
| !! | GCATGATGTGAGTACCGGTG+TGG | - | chr6_4:20537569-20537588 | None:intergenic | 55.0% |
| CACGCTGTTACATTTGCCGC+AGG | + | chr6_4:20537730-20537749 | Msa0981270:CDS | 55.0% | |
| ! | GCTGTGCAGCAGCCTGTTTT+TGG | - | chr6_4:20538091-20538110 | None:intergenic | 55.0% |
| ! | CTGCTTGCCACTGTGCTGTT+AGG | - | chr6_4:20538172-20538191 | None:intergenic | 55.0% |
| ACACCAGTTCCATTTGCCCG+TGG | - | chr6_4:20538585-20538604 | None:intergenic | 55.0% | |
| GGAATGCCTCTATTCCCTGG+TGG | - | chr6_4:20538615-20538634 | None:intergenic | 55.0% | |
| AAGGGCCACTCTTTCGCCTT+CGG | - | chr6_4:20538917-20538936 | None:intergenic | 55.0% | |
| ! | AGGCGAAAGAGTGGCCCTTT+TGG | + | chr6_4:20538918-20538937 | Msa0981270:CDS | 55.0% |
| ! | GGCGAAAGAGTGGCCCTTTT+GGG | + | chr6_4:20538919-20538938 | Msa0981270:CDS | 55.0% |
| ! | AGAGTGGCCCTTTTGGGCTT+TGG | + | chr6_4:20538925-20538944 | Msa0981270:CDS | 55.0% |
| ! | GAGTGGCCCTTTTGGGCTTT+GGG | + | chr6_4:20538926-20538945 | Msa0981270:CDS | 55.0% |
| CTGCTGTCCCAAAGCCCAAA+AGG | - | chr6_4:20538936-20538955 | None:intergenic | 55.0% | |
| !! | ACATGGCTTGCTTGTCACGG+TGG | + | chr6_4:20538993-20539012 | Msa0981270:CDS | 55.0% |
| CGAATGAGCGAACGGTCCAA+TGG | - | chr6_4:20539039-20539058 | None:intergenic | 55.0% | |
| GCTCAGTTCATGGCCCTTGA+TGG | + | chr6_4:20539132-20539151 | Msa0981270:CDS | 55.0% | |
| ! | GAAACACCATTGGCCTCCAC+TGG | - | chr6_4:20539505-20539524 | None:intergenic | 55.0% |
| !! | TGGTGCTATGACTGCAGGGC+AGG | + | chr6_4:20536298-20536317 | Msa0981270:CDS | 60.0% |
| GACTGCAGGGCAGGCATTTG+AGG | + | chr6_4:20536307-20536326 | Msa0981270:CDS | 60.0% | |
| CTACCTACCGCGGACCTTCA+TGG | + | chr6_4:20536398-20536417 | Msa0981270:CDS | 60.0% | |
| CAAGACCAAGGCTCCCACAC+CGG | + | chr6_4:20537552-20537571 | Msa0981270:CDS | 60.0% | |
| GCTGCAATGGGAGGTGGAAC+CGG | + | chr6_4:20537646-20537665 | Msa0981270:CDS | 60.0% | |
| ! | GCCGCAGGTCTAGCTTGTGA+AGG | + | chr6_4:20537745-20537764 | Msa0981270:CDS | 60.0% |
| AAGGCCTCGAACAACGAGGC+TGG | + | chr6_4:20538016-20538035 | Msa0981270:intron | 60.0% | |
| GCTCACCGAAGGCGAAAGAG+TGG | + | chr6_4:20538909-20538928 | Msa0981270:CDS | 60.0% | |
| !! | TGGCTTGCTTGTCACGGTGG+CGG | + | chr6_4:20538996-20539015 | Msa0981270:CDS | 60.0% |
| CAGTGTCACCGCCGTCAATG+AGG | - | chr6_4:20539373-20539392 | None:intergenic | 60.0% | |
| GGACCATGAAGGTCCGCGGT+AGG | - | chr6_4:20536404-20536423 | None:intergenic | 65.0% | |
| !! | GAGTACCGGTGTGGGAGCCT+TGG | - | chr6_4:20537560-20537579 | None:intergenic | 65.0% |
| CAGAAGCAGCACGCAAGGCC+AGG | + | chr6_4:20538119-20538138 | Msa0981270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 20534233 | 20539655 | 20534233 | ID=Msa0981270;Name=Msa0981270 |
| chr6_4 | mRNA | 20534233 | 20539655 | 20534233 | ID=Msa0981270-mRNA-1;Parent=Msa0981270;Name=Msa0981270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.22|0|1|1|1|10|0|696 |
| chr6_4 | exon | 20534233 | 20534376 | 20534233 | ID=Msa0981270-mRNA-1:exon:6308;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20534594 | 20534719 | 20534594 | ID=Msa0981270-mRNA-1:exon:6309;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20535189 | 20535353 | 20535189 | ID=Msa0981270-mRNA-1:exon:6310;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20535472 | 20535622 | 20535472 | ID=Msa0981270-mRNA-1:exon:6311;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20536237 | 20536490 | 20536237 | ID=Msa0981270-mRNA-1:exon:6312;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20537116 | 20537341 | 20537116 | ID=Msa0981270-mRNA-1:exon:6313;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20537515 | 20537822 | 20537515 | ID=Msa0981270-mRNA-1:exon:6314;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20538360 | 20538641 | 20538360 | ID=Msa0981270-mRNA-1:exon:6315;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20538892 | 20539176 | 20538892 | ID=Msa0981270-mRNA-1:exon:6316;Parent=Msa0981270-mRNA-1 |
| chr6_4 | exon | 20539506 | 20539655 | 20539506 | ID=Msa0981270-mRNA-1:exon:6317;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20534233 | 20534376 | 20534233 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20534594 | 20534719 | 20534594 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20535189 | 20535353 | 20535189 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20535472 | 20535622 | 20535472 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20536237 | 20536490 | 20536237 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20537116 | 20537341 | 20537116 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20537515 | 20537822 | 20537515 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20538360 | 20538641 | 20538360 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20538892 | 20539176 | 20538892 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| chr6_4 | CDS | 20539506 | 20539655 | 20539506 | ID=Msa0981270-mRNA-1:cds;Parent=Msa0981270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
