AlfalfaGEDB | Msa0458900

M. sativa cultivar zhongmu-4 / Msa0458900

KEGG: K11663
GO: GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009909 GO:0009987 GO:0016043 GO:0019222 GO:0019899 GO:0031056 GO:0031063 GO:0031323 GO:0031399 GO:0031491 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0034728 GO:0040008 GO:0042742 GO:0042802 GO:0042826 GO:0043044 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0048580 GO:0048638 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0070603 GO:0071824 GO:0071840 GO:0080090 GO:0090311 GO:0097346 GO:0098542 GO:1902275 GO:1902494 GO:1904949 GO:2000026 GO:2000241
PFAM: PF04438.19

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458900	XP_013460354.1	98.266	173	3	0	1	173	1	173	3.64e-123	354

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458900	sp\|Q9FHW2\|SWC6_ARATH	71.264	174	46	3	1	173	1	171	1.13e-86	254

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458900	A0A072UYB1	98.266	173	3	0	1	173	1	173	1.74e-123	354

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050380	Msa0458900	-0.815481	9.043575e-52	-8.615850e-47
Msa0215320	Msa0458900	0.809337	1.988869e-50	-8.615850e-47
Msa0458900	Msa0493000	-0.802675	5.013783e-49	-8.615850e-47
Msa0458900	Msa0523940	-0.806488	8.028232e-50	-8.615850e-47
Msa0458900	Msa0585230	-0.824219	9.088216e-54	-8.615850e-47
Msa0458900	Msa0672690	-0.806724	7.159366e-50	-8.615850e-47
Msa0458900	Msa0678800	0.818793	1.628276e-52	-8.615850e-47
Msa0458900	Msa0708860	-0.803230	3.849500e-49	-8.615850e-47
Msa0458900	Msa0931520	-0.802199	6.284689e-49	-8.615850e-47
Msa0458900	Msa1075080	0.815321	9.816432e-52	-8.615850e-47
Msa0458900	Msa1075220	0.810425	1.159963e-50	-8.615850e-47
Msa0458900	Msa1082580	-0.806779	6.971132e-50	-8.615850e-47
Msa0458900	Msa1224580	0.805711	1.169860e-49	-8.615850e-47
Msa0458900	Msa1262990	0.801787	7.636190e-49	-8.615850e-47
Msa0458900	Msa1451620	0.855518	5.980461e-62	-8.615850e-47
Msa0458900	Msa1453560	-0.810351	1.203601e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458900	MtrunA17_Chr3g0106381	98.266	173	3	0	1	173	1	173	3.35e-127	354

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0458900	AT5G37055.1	71.264	174	46	3	1	173	1	171	1.15e-87	254

Find 71 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAATCTCTTCGATTTGAATT+TGG	0.081997	3_3:+55105031	None:intergenic
AGCAAGTGCGGCGACCATTT+TGG	0.242579	3_3:+55104866	None:intergenic
AATCTCTTCGATTTGAATTT+GGG	0.262335	3_3:+55105032	None:intergenic
ACATCTAACACAGGTGTAAT+TGG	0.304248	3_3:+55103713	None:intergenic
AGATACCATGTATCCAATAC+TGG	0.308448	3_3:+55103586	None:intergenic
CTCCACATGTTCCCACATAT+TGG	0.330771	3_3:-55103803	Msa0458900:CDS
TCTTGCACGGTTGGATGCTT+TGG	0.368967	3_3:-55104817	Msa0458900:CDS
TTCCTCCATTTCAACTTTCA+AGG	0.370119	3_3:+55104941	None:intergenic
CGTTAACAGAGAACTAGATT+TGG	0.378491	3_3:+55104969	None:intergenic
AGCTTCATCATCATCAAGAT+TGG	0.387279	3_3:+55104761	None:intergenic
AGCAGCCTGGGTGCGGTTGT+CGG	0.392271	3_3:+55104839	None:intergenic
AAGAGCTCATGAAATGTTCT+TGG	0.394282	3_3:+55103959	None:intergenic
GGCGACAAATTTCAAGCATC+GGG	0.399772	3_3:+55103644	None:intergenic
TGTTCTTGTTGAAGCCTTGA+AGG	0.402687	3_3:-55105010	Msa0458900:five_prime_UTR
ACTAAAACACTAATCTCAAA+AGG	0.403871	3_3:+55103481	None:intergenic
CACTAATCTCAAAAGGGAAA+AGG	0.412699	3_3:+55103488	None:intergenic
CCAGGCTGCTCTTGCACGGT+TGG	0.414949	3_3:-55104826	Msa0458900:CDS
ACTAATCTCAAAAGGGAAAA+GGG	0.415146	3_3:+55103489	None:intergenic
AAAACCCTTGAAAGTTGAAA+TGG	0.416658	3_3:-55104946	Msa0458900:exon
ACGAAAAGTTGCTTCCAAAA+TGG	0.419378	3_3:-55104880	Msa0458900:CDS
GAATTTGGGTTCGTGTGTTT+AGG	0.425704	3_3:+55105046	None:intergenic
AGAGCTCATGAAATGTTCTT+GGG	0.430494	3_3:+55103960	None:intergenic
TGGCGACGGGCGGTTGAGCT+TGG	0.433242	3_3:+55103762	None:intergenic
AACAGCTGCTTTCCAATATG+TGG	0.436494	3_3:+55103791	None:intergenic
AATTCAAACCGCCGCACGTC+AGG	0.438893	3_3:-55104909	Msa0458900:CDS
GTGGCATCAAACAAATGTTT+AGG	0.471669	3_3:+55103623	None:intergenic
TAGTTGCTTGACCAGGTTCA+AGG	0.472062	3_3:-55103462	Msa0458900:three_prime_UTR
TCCTCCATTTCAACTTTCAA+GGG	0.472218	3_3:+55104942	None:intergenic
CCTGCCCAGTATTGGATACA+TGG	0.473392	3_3:-55103591	Msa0458900:three_prime_UTR
CAACCGTGCAAGAGCAGCCT+GGG	0.475118	3_3:+55104827	None:intergenic
CCAACCGTGCAAGAGCAGCC+TGG	0.481670	3_3:+55104826	None:intergenic
GGTTCGTGTGTTTAGGTGAA+AGG	0.485601	3_3:+55105053	None:intergenic
AAAGTTGAAATGGAGGAAGA+TGG	0.486361	3_3:-55104936	Msa0458900:exon
TCTCTTGATGATGATGATCA+AGG	0.490815	3_3:-55104738	Msa0458900:intron
CCATGTATCCAATACTGGGC+AGG	0.493141	3_3:+55103591	None:intergenic
GCTTCATCATCATCAAGATT+GGG	0.498852	3_3:+55104762	None:intergenic
AGGCGACAAATTTCAAGCAT+CGG	0.503114	3_3:+55103643	None:intergenic
GTGCAAGAGCAGCCTGGGTG+CGG	0.511736	3_3:+55104832	None:intergenic
AACAATCTAAAGGCACCAAA+AGG	0.521348	3_3:-55104021	Msa0458900:CDS
CGACGGGCGGTTGAGCTTGG+AGG	0.521898	3_3:+55103765	None:intergenic
ATGCAGAGAAAACAATCTAA+AGG	0.524265	3_3:-55104031	Msa0458900:CDS
AAGCAAAAGCACTTGAAGCT+AGG	0.530297	3_3:-55103988	Msa0458900:CDS
TGGATACATGGTATCTTAAG+TGG	0.530597	3_3:-55103579	Msa0458900:three_prime_UTR
GATAATCGAAGGTACCTTCA+AGG	0.541420	3_3:+55104996	None:intergenic
CTAAAACACTAATCTCAAAA+GGG	0.542226	3_3:+55103482	None:intergenic
ACTTGCTCTGTACACAGTCT+TGG	0.549850	3_3:+55103533	None:intergenic
AACCACAGACAGTACAAAAG+TGG	0.557685	3_3:+55103742	None:intergenic
GCACCCAGGCTGCTCTTGCA+CGG	0.563556	3_3:-55104830	Msa0458900:CDS
AAAAGCACTTGAAGCTAGGA+AGG	0.564113	3_3:-55103984	Msa0458900:CDS
GACAGTACAAAAGTGGCGAC+GGG	0.566475	3_3:+55103749	None:intergenic
CATGTATCCAATACTGGGCA+GGG	0.567280	3_3:+55103592	None:intergenic
ACATATTGGAAAGCAGCTGT+TGG	0.569075	3_3:-55103789	Msa0458900:CDS
TTCGTGTTCGGCCTGACGTG+CGG	0.571301	3_3:+55104898	None:intergenic
ACCCTTGAAAGTTGAAATGG+AGG	0.584282	3_3:-55104943	Msa0458900:exon
TTCCAATATGTGGGAACATG+TGG	0.593042	3_3:+55103801	None:intergenic
CTAATCTCAAAAGGGAAAAG+GGG	0.593879	3_3:+55103490	None:intergenic
GTGTTCGGCCTGACGTGCGG+CGG	0.595568	3_3:+55104901	None:intergenic
AGACAGTACAAAAGTGGCGA+CGG	0.605488	3_3:+55103748	None:intergenic
CAATATGTGGGAACATGTGG+AGG	0.608887	3_3:+55103804	None:intergenic
GTTGTCGGAGCTAGCAAGTG+CGG	0.612413	3_3:+55104854	None:intergenic
ATGTATCCAATACTGGGCAG+GGG	0.614200	3_3:+55103593	None:intergenic
GATACCATGTATCCAATACT+GGG	0.619537	3_3:+55103587	None:intergenic
ACAGCTGCTTTCCAATATGT+GGG	0.626456	3_3:+55103792	None:intergenic
TGTATCCAATACTGGGCAGG+GGG	0.627753	3_3:+55103594	None:intergenic
GAGCTCATGAAATGTTCTTG+GGG	0.634300	3_3:+55103961	None:intergenic
TAGCTCCGACAACCGCACCC+AGG	0.635728	3_3:-55104844	Msa0458900:CDS
AGTACAAAAGTGGCGACGGG+CGG	0.682067	3_3:+55103752	None:intergenic
GATTTGGTGACGATAATCGA+AGG	0.682222	3_3:+55104985	None:intergenic
GCTTTGGAGAATGACAATGC+TGG	0.683138	3_3:-55104801	Msa0458900:CDS
GCGCACACCACATCTAACAC+AGG	0.694036	3_3:+55103704	None:intergenic
AATTACACCTGTGTTAGATG+TGG	0.697993	3_3:-55103711	Msa0458900:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTAAACTCAATTTTATTT+TGG	+	chr3_3:55104445-55104464	None:intergenic	10.0%
!!!	AATTAAACTCAATTTTATTT+TGG	+	chr3_3:55104445-55104464	None:intergenic	10.0%
!!	AGATTAAAAATTCAGTTTAA+TGG	-	chr3_3:55103437-55103456	Msa0458900:three_prime_UTR	15.0%
!!	TACAATAAAAAATGCAATTT+GGG	+	chr3_3:55103818-55103837	None:intergenic	15.0%
!!	ATACAATAAAAAATGCAATT+TGG	+	chr3_3:55103819-55103838	None:intergenic	15.0%
!!!	AATTTGCATTTTTAAATAGA+AGG	-	chr3_3:55104254-55104273	Msa0458900:intron	15.0%
!!!	TGAATTTTTAATCTTCTTTT+TGG	+	chr3_3:55103431-55103450	None:intergenic	15.0%
!!	AGATTAAAAATTCAGTTTAA+TGG	-	chr3_3:55103437-55103456	Msa0458900:three_prime_UTR	15.0%
!!	TACAATAAAAAATGCAATTT+GGG	+	chr3_3:55103818-55103837	None:intergenic	15.0%
!!	ATACAATAAAAAATGCAATT+TGG	+	chr3_3:55103819-55103838	None:intergenic	15.0%
!!!	AATTTGCATTTTTAAATAGA+AGG	-	chr3_3:55104254-55104273	Msa0458900:intron	15.0%
!!	ACAATAAAAAATGCAATTTG+GGG	+	chr3_3:55103817-55103836	None:intergenic	20.0%
!!	AAAAAAGTAGCAACAATTAT+TGG	+	chr3_3:55103940-55103959	None:intergenic	20.0%
!!	TACAATGCATAATATATACA+AGG	+	chr3_3:55103979-55103998	None:intergenic	20.0%
!!	CAACTTATAATATTACACAT+TGG	+	chr3_3:55104331-55104350	None:intergenic	20.0%
!!!	CAGAAAAATGTTTATGTTTT+AGG	-	chr3_3:55105080-55105099	Msa0458900:five_prime_UTR	20.0%
!!	ACAATAAAAAATGCAATTTG+GGG	+	chr3_3:55103817-55103836	None:intergenic	20.0%
!!	AAAAAAGTAGCAACAATTAT+TGG	+	chr3_3:55103940-55103959	None:intergenic	20.0%
!!	TACAATGCATAATATATACA+AGG	+	chr3_3:55103979-55103998	None:intergenic	20.0%
!!	CAACTTATAATATTACACAT+TGG	+	chr3_3:55104331-55104350	None:intergenic	20.0%
!!!	CAGAAAAATGTTTATGTTTT+AGG	-	chr3_3:55105080-55105099	Msa0458900:five_prime_UTR	20.0%
!!	AATCTCTTCGATTTGAATTT+GGG	+	chr3_3:55103486-55103505	None:intergenic	25.0%
!!	CTTCTGGTATTTTTCATTTT+AGG	-	chr3_3:55103884-55103903	Msa0458900:intron	25.0%
!!!	ACTGTTGCTATTTGAATTTA+AGG	-	chr3_3:55104026-55104045	Msa0458900:CDS	25.0%
!!	ATAGTGTTTTACTCTTTACT+TGG	-	chr3_3:55104632-55104651	Msa0458900:intron	25.0%
!!!	CTTGGATTTGTTTTATGAAT+TGG	-	chr3_3:55104650-55104669	Msa0458900:intron	25.0%
!	CTAAAACACTAATCTCAAAA+GGG	+	chr3_3:55105036-55105055	None:intergenic	25.0%
!	ACTAAAACACTAATCTCAAA+AGG	+	chr3_3:55105037-55105056	None:intergenic	25.0%
!!	AATCTCTTCGATTTGAATTT+GGG	+	chr3_3:55103486-55103505	None:intergenic	25.0%
!!	CTTCTGGTATTTTTCATTTT+AGG	-	chr3_3:55103884-55103903	Msa0458900:intron	25.0%
!!!	ACTGTTGCTATTTGAATTTA+AGG	-	chr3_3:55104026-55104045	Msa0458900:CDS	25.0%
!!	ATAGTGTTTTACTCTTTACT+TGG	-	chr3_3:55104632-55104651	Msa0458900:intron	25.0%
!!!	CTTGGATTTGTTTTATGAAT+TGG	-	chr3_3:55104650-55104669	Msa0458900:intron	25.0%
!	CTAAAACACTAATCTCAAAA+GGG	+	chr3_3:55105036-55105055	None:intergenic	25.0%
!	ACTAAAACACTAATCTCAAA+AGG	+	chr3_3:55105037-55105056	None:intergenic	25.0%
!	CAATCTCTTCGATTTGAATT+TGG	+	chr3_3:55103487-55103506	None:intergenic	30.0%
	AAAACCCTTGAAAGTTGAAA+TGG	-	chr3_3:55103569-55103588	Msa0458900:three_prime_UTR	30.0%
	GAAGAACAAAATTTCAGCAA+TGG	+	chr3_3:55103868-55103887	None:intergenic	30.0%
!	TTGCTGAAATTTTGTTCTTC+TGG	-	chr3_3:55103868-55103887	Msa0458900:intron	30.0%
!!!	ACTTTTTTTTGTGATGAACC+CGG	-	chr3_3:55103952-55103971	Msa0458900:CDS	30.0%
	TGCATAATATATACAAGGTC+CGG	+	chr3_3:55103974-55103993	None:intergenic	30.0%
!	ATTTCAAGTGGTATTTGTCA+AGG	+	chr3_3:55104138-55104157	None:intergenic	30.0%
	GCATATACACTGCAATAATA+AGG	+	chr3_3:55104468-55104487	None:intergenic	30.0%
	ATGCAGAGAAAACAATCTAA+AGG	-	chr3_3:55104484-55104503	Msa0458900:intron	30.0%
	AGTGTGATGTTATCTCTAAA+GGG	+	chr3_3:55104611-55104630	None:intergenic	30.0%
	ACTAATCTCAAAAGGGAAAA+GGG	+	chr3_3:55105029-55105048	None:intergenic	30.0%
!	CAATCTCTTCGATTTGAATT+TGG	+	chr3_3:55103487-55103506	None:intergenic	30.0%
	AAAACCCTTGAAAGTTGAAA+TGG	-	chr3_3:55103569-55103588	Msa0458900:three_prime_UTR	30.0%
	GAAGAACAAAATTTCAGCAA+TGG	+	chr3_3:55103868-55103887	None:intergenic	30.0%
!	TTGCTGAAATTTTGTTCTTC+TGG	-	chr3_3:55103868-55103887	Msa0458900:intron	30.0%
!!!	ACTTTTTTTTGTGATGAACC+CGG	-	chr3_3:55103952-55103971	Msa0458900:CDS	30.0%
	TGCATAATATATACAAGGTC+CGG	+	chr3_3:55103974-55103993	None:intergenic	30.0%
!	ATTTCAAGTGGTATTTGTCA+AGG	+	chr3_3:55104138-55104157	None:intergenic	30.0%
	GCATATACACTGCAATAATA+AGG	+	chr3_3:55104468-55104487	None:intergenic	30.0%
	ATGCAGAGAAAACAATCTAA+AGG	-	chr3_3:55104484-55104503	Msa0458900:intron	30.0%
	AGTGTGATGTTATCTCTAAA+GGG	+	chr3_3:55104611-55104630	None:intergenic	30.0%
	ACTAATCTCAAAAGGGAAAA+GGG	+	chr3_3:55105029-55105048	None:intergenic	30.0%
	CGTTAACAGAGAACTAGATT+TGG	+	chr3_3:55103549-55103568	None:intergenic	35.0%
	TCCTCCATTTCAACTTTCAA+GGG	+	chr3_3:55103576-55103595	None:intergenic	35.0%
	TTCCTCCATTTCAACTTTCA+AGG	+	chr3_3:55103577-55103596	None:intergenic	35.0%
	AAAGTTGAAATGGAGGAAGA+TGG	-	chr3_3:55103579-55103598	Msa0458900:three_prime_UTR	35.0%
	ACGAAAAGTTGCTTCCAAAA+TGG	-	chr3_3:55103635-55103654	Msa0458900:exon	35.0%
	GCTTCATCATCATCAAGATT+GGG	+	chr3_3:55103756-55103775	None:intergenic	35.0%
	AGCTTCATCATCATCAAGAT+TGG	+	chr3_3:55103757-55103776	None:intergenic	35.0%
!!	TCTCTTGATGATGATGATCA+AGG	-	chr3_3:55103777-55103796	Msa0458900:CDS	35.0%
!	TGATGATGATGATCAAGGTT+AGG	-	chr3_3:55103782-55103801	Msa0458900:CDS	35.0%
	GCATAATATATACAAGGTCC+GGG	+	chr3_3:55103973-55103992	None:intergenic	35.0%
	ACAGATAAGAGATGGTAGAT+TGG	-	chr3_3:55104165-55104184	Msa0458900:intron	35.0%
	AGAGATGGTAGATTGGAATT+CGG	-	chr3_3:55104172-55104191	Msa0458900:intron	35.0%
	TTGACATTGTCAGTTGAGTT+AGG	-	chr3_3:55104217-55104236	Msa0458900:intron	35.0%
!!	AACAATCTAAAGGCACCAAA+AGG	-	chr3_3:55104494-55104513	Msa0458900:intron	35.0%
	AGAGCTCATGAAATGTTCTT+GGG	+	chr3_3:55104558-55104577	None:intergenic	35.0%
	AAGAGCTCATGAAATGTTCT+TGG	+	chr3_3:55104559-55104578	None:intergenic	35.0%
	GAGTGTGATGTTATCTCTAA+AGG	+	chr3_3:55104612-55104631	None:intergenic	35.0%
	ACATCTAACACAGGTGTAAT+TGG	+	chr3_3:55104805-55104824	None:intergenic	35.0%
	AATTACACCTGTGTTAGATG+TGG	-	chr3_3:55104804-55104823	Msa0458900:CDS	35.0%
	GTGGCATCAAACAAATGTTT+AGG	+	chr3_3:55104895-55104914	None:intergenic	35.0%
	GATACCATGTATCCAATACT+GGG	+	chr3_3:55104931-55104950	None:intergenic	35.0%
	AGATACCATGTATCCAATAC+TGG	+	chr3_3:55104932-55104951	None:intergenic	35.0%
	TGGATACATGGTATCTTAAG+TGG	-	chr3_3:55104936-55104955	Msa0458900:exon	35.0%
	CTAATCTCAAAAGGGAAAAG+GGG	+	chr3_3:55105028-55105047	None:intergenic	35.0%
	CACTAATCTCAAAAGGGAAA+AGG	+	chr3_3:55105030-55105049	None:intergenic	35.0%
	CGTTAACAGAGAACTAGATT+TGG	+	chr3_3:55103549-55103568	None:intergenic	35.0%
	TCCTCCATTTCAACTTTCAA+GGG	+	chr3_3:55103576-55103595	None:intergenic	35.0%
	TTCCTCCATTTCAACTTTCA+AGG	+	chr3_3:55103577-55103596	None:intergenic	35.0%
	AAAGTTGAAATGGAGGAAGA+TGG	-	chr3_3:55103579-55103598	Msa0458900:three_prime_UTR	35.0%
	ACGAAAAGTTGCTTCCAAAA+TGG	-	chr3_3:55103635-55103654	Msa0458900:exon	35.0%
	GCTTCATCATCATCAAGATT+GGG	+	chr3_3:55103756-55103775	None:intergenic	35.0%
	AGCTTCATCATCATCAAGAT+TGG	+	chr3_3:55103757-55103776	None:intergenic	35.0%
!!	TCTCTTGATGATGATGATCA+AGG	-	chr3_3:55103777-55103796	Msa0458900:CDS	35.0%
!	TGATGATGATGATCAAGGTT+AGG	-	chr3_3:55103782-55103801	Msa0458900:CDS	35.0%
	GCATAATATATACAAGGTCC+GGG	+	chr3_3:55103973-55103992	None:intergenic	35.0%
	ACAGATAAGAGATGGTAGAT+TGG	-	chr3_3:55104165-55104184	Msa0458900:intron	35.0%
	AGAGATGGTAGATTGGAATT+CGG	-	chr3_3:55104172-55104191	Msa0458900:intron	35.0%
	TTGACATTGTCAGTTGAGTT+AGG	-	chr3_3:55104217-55104236	Msa0458900:intron	35.0%
!!	AACAATCTAAAGGCACCAAA+AGG	-	chr3_3:55104494-55104513	Msa0458900:intron	35.0%
	AGAGCTCATGAAATGTTCTT+GGG	+	chr3_3:55104558-55104577	None:intergenic	35.0%
	AAGAGCTCATGAAATGTTCT+TGG	+	chr3_3:55104559-55104578	None:intergenic	35.0%
	GAGTGTGATGTTATCTCTAA+AGG	+	chr3_3:55104612-55104631	None:intergenic	35.0%
	ACATCTAACACAGGTGTAAT+TGG	+	chr3_3:55104805-55104824	None:intergenic	35.0%
	AATTACACCTGTGTTAGATG+TGG	-	chr3_3:55104804-55104823	Msa0458900:CDS	35.0%
	GTGGCATCAAACAAATGTTT+AGG	+	chr3_3:55104895-55104914	None:intergenic	35.0%
	GATACCATGTATCCAATACT+GGG	+	chr3_3:55104931-55104950	None:intergenic	35.0%
	AGATACCATGTATCCAATAC+TGG	+	chr3_3:55104932-55104951	None:intergenic	35.0%
	TGGATACATGGTATCTTAAG+TGG	-	chr3_3:55104936-55104955	Msa0458900:exon	35.0%
	CTAATCTCAAAAGGGAAAAG+GGG	+	chr3_3:55105028-55105047	None:intergenic	35.0%
	CACTAATCTCAAAAGGGAAA+AGG	+	chr3_3:55105030-55105049	None:intergenic	35.0%
!	GAATTTGGGTTCGTGTGTTT+AGG	+	chr3_3:55103472-55103491	None:intergenic	40.0%
	TGTTCTTGTTGAAGCCTTGA+AGG	-	chr3_3:55103505-55103524	Msa0458900:three_prime_UTR	40.0%
!!	GATAATCGAAGGTACCTTCA+AGG	+	chr3_3:55103522-55103541	None:intergenic	40.0%
!!	GATTTGGTGACGATAATCGA+AGG	+	chr3_3:55103533-55103552	None:intergenic	40.0%
	ACCCTTGAAAGTTGAAATGG+AGG	-	chr3_3:55103572-55103591	Msa0458900:three_prime_UTR	40.0%
!	TGGAAGCAACTTTTCGTGTT+CGG	+	chr3_3:55103632-55103651	None:intergenic	40.0%
	TCTGTTTGCGAGATTTCAAG+TGG	+	chr3_3:55104150-55104169	None:intergenic	40.0%
	TCTCGCAAACAGATAAGAGA+TGG	-	chr3_3:55104157-55104176	Msa0458900:intron	40.0%
	GAGATGGTAGATTGGAATTC+GGG	-	chr3_3:55104173-55104192	Msa0458900:intron	40.0%
	CTCAACTGACAATGTCAAGA+TGG	+	chr3_3:55104215-55104234	None:intergenic	40.0%
	ATGCAAATTGTCCGACTGTT+AGG	+	chr3_3:55104243-55104262	None:intergenic	40.0%
!!!	TGCTTGTCTGGTTTTCCTTT+TGG	+	chr3_3:55104512-55104531	None:intergenic	40.0%
!	TTCAAGTGCTTTTGCTTGTC+TGG	+	chr3_3:55104524-55104543	None:intergenic	40.0%
!!	AAGCAAAAGCACTTGAAGCT+AGG	-	chr3_3:55104527-55104546	Msa0458900:intron	40.0%
!!	AAAAGCACTTGAAGCTAGGA+AGG	-	chr3_3:55104531-55104550	Msa0458900:intron	40.0%
	GAGCTCATGAAATGTTCTTG+GGG	+	chr3_3:55104557-55104576	None:intergenic	40.0%
!!	TGCCTGCATTTTAAGGAACA+AGG	+	chr3_3:55104676-55104695	None:intergenic	40.0%
!	CTACGTTTGCCTGCATTTTA+AGG	+	chr3_3:55104683-55104702	None:intergenic	40.0%
	TTCCAATATGTGGGAACATG+TGG	+	chr3_3:55104717-55104736	None:intergenic	40.0%
!	ACAGCTGCTTTCCAATATGT+GGG	+	chr3_3:55104726-55104745	None:intergenic	40.0%
!	AACAGCTGCTTTCCAATATG+TGG	+	chr3_3:55104727-55104746	None:intergenic	40.0%
	ACATATTGGAAAGCAGCTGT+TGG	-	chr3_3:55104726-55104745	Msa0458900:intron	40.0%
	AACCACAGACAGTACAAAAG+TGG	+	chr3_3:55104776-55104795	None:intergenic	40.0%
!!	GTGAACATTTTGACACCGAT+TGG	+	chr3_3:55104844-55104863	None:intergenic	40.0%
	AGGCGACAAATTTCAAGCAT+CGG	+	chr3_3:55104875-55104894	None:intergenic	40.0%
!!!	AGTGTTTTAGTTGCTTGACC+AGG	-	chr3_3:55105046-55105065	Msa0458900:five_prime_UTR	40.0%
!	GAATTTGGGTTCGTGTGTTT+AGG	+	chr3_3:55103472-55103491	None:intergenic	40.0%
	TGTTCTTGTTGAAGCCTTGA+AGG	-	chr3_3:55103505-55103524	Msa0458900:three_prime_UTR	40.0%
!!	GATAATCGAAGGTACCTTCA+AGG	+	chr3_3:55103522-55103541	None:intergenic	40.0%
!!	GATTTGGTGACGATAATCGA+AGG	+	chr3_3:55103533-55103552	None:intergenic	40.0%
	ACCCTTGAAAGTTGAAATGG+AGG	-	chr3_3:55103572-55103591	Msa0458900:three_prime_UTR	40.0%
!	TGGAAGCAACTTTTCGTGTT+CGG	+	chr3_3:55103632-55103651	None:intergenic	40.0%
	TCTGTTTGCGAGATTTCAAG+TGG	+	chr3_3:55104150-55104169	None:intergenic	40.0%
	TCTCGCAAACAGATAAGAGA+TGG	-	chr3_3:55104157-55104176	Msa0458900:intron	40.0%
	GAGATGGTAGATTGGAATTC+GGG	-	chr3_3:55104173-55104192	Msa0458900:intron	40.0%
	CTCAACTGACAATGTCAAGA+TGG	+	chr3_3:55104215-55104234	None:intergenic	40.0%
	ATGCAAATTGTCCGACTGTT+AGG	+	chr3_3:55104243-55104262	None:intergenic	40.0%
!!!	TGCTTGTCTGGTTTTCCTTT+TGG	+	chr3_3:55104512-55104531	None:intergenic	40.0%
!	TTCAAGTGCTTTTGCTTGTC+TGG	+	chr3_3:55104524-55104543	None:intergenic	40.0%
!!	AAGCAAAAGCACTTGAAGCT+AGG	-	chr3_3:55104527-55104546	Msa0458900:intron	40.0%
!!	AAAAGCACTTGAAGCTAGGA+AGG	-	chr3_3:55104531-55104550	Msa0458900:intron	40.0%
	GAGCTCATGAAATGTTCTTG+GGG	+	chr3_3:55104557-55104576	None:intergenic	40.0%
!!	TGCCTGCATTTTAAGGAACA+AGG	+	chr3_3:55104676-55104695	None:intergenic	40.0%
!	CTACGTTTGCCTGCATTTTA+AGG	+	chr3_3:55104683-55104702	None:intergenic	40.0%
	TTCCAATATGTGGGAACATG+TGG	+	chr3_3:55104717-55104736	None:intergenic	40.0%
!	ACAGCTGCTTTCCAATATGT+GGG	+	chr3_3:55104726-55104745	None:intergenic	40.0%
!	AACAGCTGCTTTCCAATATG+TGG	+	chr3_3:55104727-55104746	None:intergenic	40.0%
	ACATATTGGAAAGCAGCTGT+TGG	-	chr3_3:55104726-55104745	Msa0458900:intron	40.0%
	AACCACAGACAGTACAAAAG+TGG	+	chr3_3:55104776-55104795	None:intergenic	40.0%
!!	GTGAACATTTTGACACCGAT+TGG	+	chr3_3:55104844-55104863	None:intergenic	40.0%
	AGGCGACAAATTTCAAGCAT+CGG	+	chr3_3:55104875-55104894	None:intergenic	40.0%
!!!	AGTGTTTTAGTTGCTTGACC+AGG	-	chr3_3:55105046-55105065	Msa0458900:five_prime_UTR	40.0%
	GGTTCGTGTGTTTAGGTGAA+AGG	+	chr3_3:55103465-55103484	None:intergenic	45.0%
!!	GCTTTGGAGAATGACAATGC+TGG	-	chr3_3:55103714-55103733	Msa0458900:CDS	45.0%
	TTAACTGAGCTAAGCTCACG+AGG	-	chr3_3:55104003-55104022	Msa0458900:CDS	45.0%
	GTTGAGTTAGGCCTAACAGT+CGG	-	chr3_3:55104229-55104248	Msa0458900:intron	45.0%
!!	GGCCTTGTTCCTTAAAATGC+AGG	-	chr3_3:55104671-55104690	Msa0458900:intron	45.0%
	CAATATGTGGGAACATGTGG+AGG	+	chr3_3:55104714-55104733	None:intergenic	45.0%
	CTCCACATGTTCCCACATAT+TGG	-	chr3_3:55104712-55104731	Msa0458900:intron	45.0%
	AGACAGTACAAAAGTGGCGA+CGG	+	chr3_3:55104770-55104789	None:intergenic	45.0%
!	GTGTGCGCTTTTGTTCCAAT+CGG	-	chr3_3:55104826-55104845	Msa0458900:CDS	45.0%
	GGCGACAAATTTCAAGCATC+GGG	+	chr3_3:55104874-55104893	None:intergenic	45.0%
	ATGTATCCAATACTGGGCAG+GGG	+	chr3_3:55104925-55104944	None:intergenic	45.0%
	CATGTATCCAATACTGGGCA+GGG	+	chr3_3:55104926-55104945	None:intergenic	45.0%
	ACTTGCTCTGTACACAGTCT+TGG	+	chr3_3:55104985-55105004	None:intergenic	45.0%
	TAGTTGCTTGACCAGGTTCA+AGG	-	chr3_3:55105053-55105072	Msa0458900:five_prime_UTR	45.0%
!	TTTTCTGCTTGCCTTGAACC+TGG	+	chr3_3:55105067-55105086	None:intergenic	45.0%
	GGTTCGTGTGTTTAGGTGAA+AGG	+	chr3_3:55103465-55103484	None:intergenic	45.0%
!!	GCTTTGGAGAATGACAATGC+TGG	-	chr3_3:55103714-55103733	Msa0458900:CDS	45.0%
	TTAACTGAGCTAAGCTCACG+AGG	-	chr3_3:55104003-55104022	Msa0458900:CDS	45.0%
	GTTGAGTTAGGCCTAACAGT+CGG	-	chr3_3:55104229-55104248	Msa0458900:intron	45.0%
!!	GGCCTTGTTCCTTAAAATGC+AGG	-	chr3_3:55104671-55104690	Msa0458900:intron	45.0%
	CAATATGTGGGAACATGTGG+AGG	+	chr3_3:55104714-55104733	None:intergenic	45.0%
	CTCCACATGTTCCCACATAT+TGG	-	chr3_3:55104712-55104731	Msa0458900:intron	45.0%
	AGACAGTACAAAAGTGGCGA+CGG	+	chr3_3:55104770-55104789	None:intergenic	45.0%
!	GTGTGCGCTTTTGTTCCAAT+CGG	-	chr3_3:55104826-55104845	Msa0458900:CDS	45.0%
	GGCGACAAATTTCAAGCATC+GGG	+	chr3_3:55104874-55104893	None:intergenic	45.0%
	ATGTATCCAATACTGGGCAG+GGG	+	chr3_3:55104925-55104944	None:intergenic	45.0%
	CATGTATCCAATACTGGGCA+GGG	+	chr3_3:55104926-55104945	None:intergenic	45.0%
	ACTTGCTCTGTACACAGTCT+TGG	+	chr3_3:55104985-55105004	None:intergenic	45.0%
	TAGTTGCTTGACCAGGTTCA+AGG	-	chr3_3:55105053-55105072	Msa0458900:five_prime_UTR	45.0%
!	TTTTCTGCTTGCCTTGAACC+TGG	+	chr3_3:55105067-55105086	None:intergenic	45.0%
!!!	TTAAAACATTTTAAATTAAA+AGG	-	chr3_3:55104092-55104111	Msa0458900:intron	5.0%
!!!	TAAAACATTTTAAATTAAAA+GGG	-	chr3_3:55104093-55104112	Msa0458900:intron	5.0%
!!!	TTAAAACATTTTAAATTAAA+AGG	-	chr3_3:55104092-55104111	Msa0458900:intron	5.0%
!!!	TAAAACATTTTAAATTAAAA+GGG	-	chr3_3:55104093-55104112	Msa0458900:intron	5.0%
	TCTTGCACGGTTGGATGCTT+TGG	-	chr3_3:55103698-55103717	Msa0458900:CDS	50.0%
	GACAGTACAAAAGTGGCGAC+GGG	+	chr3_3:55104769-55104788	None:intergenic	50.0%
!!!	CGCCACTTTTGTACTGTCTG+TGG	-	chr3_3:55104771-55104790	Msa0458900:CDS	50.0%
!	TTTTTCCCCCTGCCCAGTAT+TGG	-	chr3_3:55104916-55104935	Msa0458900:CDS	50.0%
	TGTATCCAATACTGGGCAGG+GGG	+	chr3_3:55104924-55104943	None:intergenic	50.0%
	CCATGTATCCAATACTGGGC+AGG	+	chr3_3:55104927-55104946	None:intergenic	50.0%
!	CCTGCCCAGTATTGGATACA+TGG	-	chr3_3:55104924-55104943	Msa0458900:CDS	50.0%
	TCTTGCACGGTTGGATGCTT+TGG	-	chr3_3:55103698-55103717	Msa0458900:CDS	50.0%
	GACAGTACAAAAGTGGCGAC+GGG	+	chr3_3:55104769-55104788	None:intergenic	50.0%
!!!	CGCCACTTTTGTACTGTCTG+TGG	-	chr3_3:55104771-55104790	Msa0458900:CDS	50.0%
!	TTTTTCCCCCTGCCCAGTAT+TGG	-	chr3_3:55104916-55104935	Msa0458900:CDS	50.0%
	TGTATCCAATACTGGGCAGG+GGG	+	chr3_3:55104924-55104943	None:intergenic	50.0%
	CCATGTATCCAATACTGGGC+AGG	+	chr3_3:55104927-55104946	None:intergenic	50.0%
!	CCTGCCCAGTATTGGATACA+TGG	-	chr3_3:55104924-55104943	Msa0458900:CDS	50.0%
	AATTCAAACCGCCGCACGTC+AGG	-	chr3_3:55103606-55103625	Msa0458900:three_prime_UTR	55.0%
!	AGCAAGTGCGGCGACCATTT+TGG	+	chr3_3:55103652-55103671	None:intergenic	55.0%
	GTTGTCGGAGCTAGCAAGTG+CGG	+	chr3_3:55103664-55103683	None:intergenic	55.0%
	AGTACAAAAGTGGCGACGGG+CGG	+	chr3_3:55104766-55104785	None:intergenic	55.0%
	GCGCACACCACATCTAACAC+AGG	+	chr3_3:55104814-55104833	None:intergenic	55.0%
	ACTGGGCAGGGGGAAAAATG+TGG	+	chr3_3:55104914-55104933	None:intergenic	55.0%
	AATTCAAACCGCCGCACGTC+AGG	-	chr3_3:55103606-55103625	Msa0458900:three_prime_UTR	55.0%
!	AGCAAGTGCGGCGACCATTT+TGG	+	chr3_3:55103652-55103671	None:intergenic	55.0%
	GTTGTCGGAGCTAGCAAGTG+CGG	+	chr3_3:55103664-55103683	None:intergenic	55.0%
	AGTACAAAAGTGGCGACGGG+CGG	+	chr3_3:55104766-55104785	None:intergenic	55.0%
	GCGCACACCACATCTAACAC+AGG	+	chr3_3:55104814-55104833	None:intergenic	55.0%
	ACTGGGCAGGGGGAAAAATG+TGG	+	chr3_3:55104914-55104933	None:intergenic	55.0%
	TTCGTGTTCGGCCTGACGTG+CGG	+	chr3_3:55103620-55103639	None:intergenic	60.0%
	CAACCGTGCAAGAGCAGCCT+GGG	+	chr3_3:55103691-55103710	None:intergenic	60.0%
	TTCGTGTTCGGCCTGACGTG+CGG	+	chr3_3:55103620-55103639	None:intergenic	60.0%
	CAACCGTGCAAGAGCAGCCT+GGG	+	chr3_3:55103691-55103710	None:intergenic	60.0%
	TAGCTCCGACAACCGCACCC+AGG	-	chr3_3:55103671-55103690	Msa0458900:CDS	65.0%
	AGCAGCCTGGGTGCGGTTGT+CGG	+	chr3_3:55103679-55103698	None:intergenic	65.0%
	GTGCAAGAGCAGCCTGGGTG+CGG	+	chr3_3:55103686-55103705	None:intergenic	65.0%
	GCACCCAGGCTGCTCTTGCA+CGG	-	chr3_3:55103685-55103704	Msa0458900:CDS	65.0%
	CCAACCGTGCAAGAGCAGCC+TGG	+	chr3_3:55103692-55103711	None:intergenic	65.0%
	CCAGGCTGCTCTTGCACGGT+TGG	-	chr3_3:55103689-55103708	Msa0458900:CDS	65.0%
	TAGCTCCGACAACCGCACCC+AGG	-	chr3_3:55103671-55103690	Msa0458900:CDS	65.0%
	AGCAGCCTGGGTGCGGTTGT+CGG	+	chr3_3:55103679-55103698	None:intergenic	65.0%
	GTGCAAGAGCAGCCTGGGTG+CGG	+	chr3_3:55103686-55103705	None:intergenic	65.0%
	GCACCCAGGCTGCTCTTGCA+CGG	-	chr3_3:55103685-55103704	Msa0458900:CDS	65.0%
	CCAACCGTGCAAGAGCAGCC+TGG	+	chr3_3:55103692-55103711	None:intergenic	65.0%
	CCAGGCTGCTCTTGCACGGT+TGG	-	chr3_3:55103689-55103708	Msa0458900:CDS	65.0%
	GTGTTCGGCCTGACGTGCGG+CGG	+	chr3_3:55103617-55103636	None:intergenic	70.0%
	CGACGGGCGGTTGAGCTTGG+AGG	+	chr3_3:55104753-55104772	None:intergenic	70.0%
	TGGCGACGGGCGGTTGAGCT+TGG	+	chr3_3:55104756-55104775	None:intergenic	70.0%
	GTGTTCGGCCTGACGTGCGG+CGG	+	chr3_3:55103617-55103636	None:intergenic	70.0%
	CGACGGGCGGTTGAGCTTGG+AGG	+	chr3_3:55104753-55104772	None:intergenic	70.0%
	TGGCGACGGGCGGTTGAGCT+TGG	+	chr3_3:55104756-55104775	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	55103430	55105107	55103430	ID=Msa0458900;Name=Msa0458900
chr3_3	mRNA	55103430	55105107	55103430	ID=Msa0458900-mRNA-1;Parent=Msa0458900;Name=Msa0458900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=158\|1\|1\|1\|1\|1\|3\|211\|173
chr3_3	exon	55103430	55103844	55103430	ID=Msa0458900-mRNA-1:exon:10907;Parent=Msa0458900-mRNA-1
chr3_3	exon	55103952	55104058	55103952	ID=Msa0458900-mRNA-1:exon:10906;Parent=Msa0458900-mRNA-1
chr3_3	exon	55104739	55105107	55104739	ID=Msa0458900-mRNA-1:exon:10905;Parent=Msa0458900-mRNA-1
chr3_3	five_prime_UTR	55104950	55105107	55104950	ID=Msa0458900-mRNA-1:five_prime_utr;Parent=Msa0458900-mRNA-1
chr3_3	CDS	55104739	55104949	55104739	ID=Msa0458900-mRNA-1:cds;Parent=Msa0458900-mRNA-1
chr3_3	CDS	55103952	55104058	55103952	ID=Msa0458900-mRNA-1:cds;Parent=Msa0458900-mRNA-1
chr3_3	CDS	55103641	55103844	55103641	ID=Msa0458900-mRNA-1:cds;Parent=Msa0458900-mRNA-1
chr3_3	three_prime_UTR	55103430	55103640	55103430	ID=Msa0458900-mRNA-1:three_prime_utr;Parent=Msa0458900-mRNA-1

Gene Sequence

>Msa0458900

ATGGAGGAAGATGGTTCGAATTCAAACCGCCGCACGTCAGGCCGAACACGAAAAGTTGCTTCCAAAATGGTCGCCGCACTTGCTAGCTCCGACAACCGCACCCAGGCTGCTCTTGCACGGTTGGATGCTTTGGAGAATGACAATGCTGGTTTTGAAGTTGCAGATCCCAATCTTGATGATGATGAAGCTTCTCTTGATGATGATGATCAAGTGTATATGCAGAGAAAACAATCTAAAGGCACCAAAAGGAAAACCAGACAAGCAAAAGCACTTGAAGCTAGGAAGGCCCCAAGAACATTTCATGAGCTCTTACATGATGCAAACGTAGAATCATTGCCTCCACATGTTCCCACATATTGGAAAGCAGCTGTTGGACCTCCAAGCTCAACCGCCCGTCGCCACTTTTGTACTGTCTGTGGTTTCTCTGCCAATTACACCTGTGTTAGATGTGGTGTGCGCTTTTGTTCCAATCGGTGTCAAAATGTTCACAATGACACCCGATGCTTGAAATTTGTCGCCTAA

Protein sequence

>Msa0458900

MEEDGSNSNRRTSGRTRKVASKMVAALASSDNRTQAALARLDALENDNAGFEVADPNLDDDEASLDDDDQVYMQRKQSKGTKRKTRQAKALEARKAPRTFHELLHDANVESLPPHVPTYWKAAVGPPSSTARRHFCTVCGFSANYTCVRCGVRFCSNRCQNVHNDTRCLKFVA*