Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479950 | XP_013462149.1 | 92.899 | 338 | 3 | 2 | 1 | 330 | 1 | 325 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479950 | sp|Q9FWS6|BBD1_ARATH | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.14e-148 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479950 | B7FJ72 | 92.899 | 338 | 3 | 2 | 1 | 330 | 1 | 325 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064550 | Msa0479950 | 0.819135 | 1.361502e-52 | -8.615850e-47 |
| Msa0109490 | Msa0479950 | 0.816151 | 6.411777e-52 | -8.615850e-47 |
| Msa0154270 | Msa0479950 | 0.804624 | 1.975224e-49 | -8.615850e-47 |
| Msa0379340 | Msa0479950 | -0.803328 | 3.673366e-49 | -8.615850e-47 |
| Msa0384530 | Msa0479950 | 0.925391 | 1.955213e-90 | -8.615850e-47 |
| Msa0428850 | Msa0479950 | -0.803302 | 3.719988e-49 | -8.615850e-47 |
| Msa0435010 | Msa0479950 | 0.881643 | 2.024781e-70 | -8.615850e-47 |
| Msa0479030 | Msa0479950 | 0.913281 | 7.377224e-84 | -8.615850e-47 |
| Msa0479100 | Msa0479950 | 0.904368 | 1.320128e-79 | -8.615850e-47 |
| Msa0479950 | Msa0530340 | 0.801269 | 9.750801e-49 | -8.615850e-47 |
| Msa0479950 | Msa0549540 | 0.800221 | 1.595395e-48 | -8.615850e-47 |
| Msa0479950 | Msa0627050 | 0.805555 | 1.261773e-49 | -8.615850e-47 |
| Msa0479950 | Msa0675010 | 0.814202 | 1.737282e-51 | -8.615850e-47 |
| Msa0479950 | Msa0709660 | 0.896810 | 2.579258e-76 | -8.615850e-47 |
| Msa0479950 | Msa0749150 | 0.813718 | 2.221378e-51 | -8.615850e-47 |
| Msa0479950 | Msa0792880 | 0.819000 | 1.461470e-52 | -8.615850e-47 |
| Msa0479950 | Msa0828900 | 0.816588 | 5.118897e-52 | -8.615850e-47 |
| Msa0479950 | Msa0903000 | 0.820313 | 7.325994e-53 | -8.615850e-47 |
| Msa0479950 | Msa0984000 | 0.814702 | 1.346883e-51 | -8.615850e-47 |
| Msa0479950 | Msa1173380 | 0.811788 | 5.876824e-51 | -8.615850e-47 |
| Msa0479950 | Msa1463560 | -0.804073 | 2.573795e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479950 | MtrunA17_Chr3g0141831 | 92.899 | 338 | 3 | 2 | 1 | 330 | 1 | 325 | 0.0 | 645 |
| Msa0479950 | MtrunA17_Chr1g0155531 | 64.809 | 341 | 87 | 4 | 4 | 327 | 1 | 325 | 7.06e-158 | 444 |
| Msa0479950 | MtrunA17_Chr5g0406211 | 33.838 | 198 | 103 | 6 | 131 | 318 | 141 | 320 | 7.87e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479950 | AT1G75380.3 | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.19e-149 | 423 |
| Msa0479950 | AT1G75380.1 | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.19e-149 | 423 |
| Msa0479950 | AT1G75380.4 | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.19e-149 | 423 |
| Msa0479950 | AT1G75380.2 | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.19e-149 | 423 |
| Msa0479950 | AT1G19660.2 | 66.007 | 303 | 80 | 4 | 29 | 322 | 36 | 324 | 1.39e-144 | 411 |
| Msa0479950 | AT1G19660.1 | 66.007 | 303 | 80 | 4 | 29 | 322 | 36 | 324 | 1.39e-144 | 411 |
| Msa0479950 | AT1G19660.3 | 68.794 | 282 | 78 | 3 | 29 | 301 | 36 | 316 | 3.89e-141 | 402 |
| Msa0479950 | AT5G66050.2 | 34.171 | 199 | 102 | 6 | 130 | 318 | 49 | 228 | 1.97e-23 | 97.4 |
| Msa0479950 | AT5G66050.3 | 34.171 | 199 | 102 | 6 | 130 | 318 | 143 | 322 | 4.86e-23 | 97.8 |
| Msa0479950 | AT5G66050.1 | 34.171 | 199 | 102 | 6 | 130 | 318 | 143 | 322 | 5.26e-23 | 98.2 |
| Msa0479950 | AT5G66050.4 | 34.706 | 170 | 95 | 5 | 130 | 289 | 143 | 306 | 1.98e-18 | 85.1 |
Find 100 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGACCAACTTAATCAATTT+AGG | 0.211918 | 3_3:-85125922 | Msa0479950:CDS |
| TATACAAGTCAACAAGTATT+TGG | 0.238673 | 3_3:-85126563 | Msa0479950:CDS |
| ACATGGCAAGAAAGGGAATT+AGG | 0.247322 | 3_3:+85128688 | None:intergenic |
| TCCACTGTTAATGTGTATAA+TGG | 0.251102 | 3_3:-85125519 | Msa0479950:three_prime_UTR |
| GGTTGTGCTGTAAGAATTAC+AGG | 0.294013 | 3_3:-85125465 | Msa0479950:three_prime_UTR |
| ATTTAATTTAATTTAACTAT+TGG | 0.308594 | 3_3:+85128956 | None:intergenic |
| GTAGGTTTGAATGGATAAAA+TGG | 0.329200 | 3_3:-85128824 | Msa0479950:intron |
| CGATCCAGTTCAGTAAATAA+TGG | 0.329877 | 3_3:+85126472 | None:intergenic |
| TCCATCTTCAACACAATTGC+AGG | 0.355266 | 3_3:+85127587 | None:intergenic |
| TTCAAATGGCAGTGGAAGTA+TGG | 0.360002 | 3_3:-85128617 | Msa0479950:CDS |
| GGACCAACTTAATCAATTTA+GGG | 0.364117 | 3_3:-85125921 | Msa0479950:CDS |
| GTCCTCCATGAGGGCTGTTA+TGG | 0.367780 | 3_3:+85127633 | None:intergenic |
| CCCTCATGGAGGACTTCTTC+CGG | 0.368244 | 3_3:-85127624 | Msa0479950:CDS |
| TGGCCCATTATTTACTGAAC+TGG | 0.375188 | 3_3:-85126476 | Msa0479950:CDS |
| GAGGTGAAGAGTGGAGGAGA+TGG | 0.376747 | 3_3:-85127698 | Msa0479950:CDS |
| TCATATTTACATGGCAAGAA+AGG | 0.393581 | 3_3:+85128680 | None:intergenic |
| ATGAAATGACAAACAGAAAC+AGG | 0.396718 | 3_3:-85125384 | Msa0479950:three_prime_UTR |
| TTTGGTTGTGTAGGTTTGAA+TGG | 0.399839 | 3_3:-85128833 | Msa0479950:intron |
| CAGAAAAGAAAGCGAATAAC+AGG | 0.401391 | 3_3:-85125898 | Msa0479950:intron |
| TCAACACAAGGCTTACCATT+TGG | 0.407225 | 3_3:+85126257 | None:intergenic |
| TTCCATCGACATTCCAATGC+TGG | 0.409206 | 3_3:+85125681 | None:intergenic |
| AAATACTTGTTGACTTGTAT+AGG | 0.410743 | 3_3:+85126565 | None:intergenic |
| AAGAGTTACTAAGAGAGTTC+AGG | 0.417338 | 3_3:-85127018 | Msa0479950:CDS |
| GCGTTGATTGGTCCAATCAT+AGG | 0.427412 | 3_3:+85128763 | None:intergenic |
| GATGCCAAGTGTCTTGTTAA+TGG | 0.431725 | 3_3:-85127377 | Msa0479950:CDS |
| CTACTACAACCAGCGTTGAT+TGG | 0.432408 | 3_3:+85128751 | None:intergenic |
| GGAATGAGAGTAATTGAATC+AGG | 0.437048 | 3_3:-85126529 | Msa0479950:CDS |
| CTGCCCTAAATTGATTAAGT+TGG | 0.437910 | 3_3:+85125918 | None:intergenic |
| GATCCAGTTCAGTAAATAAT+GGG | 0.438185 | 3_3:+85126473 | None:intergenic |
| ATTCCTTCTTGTTTGTGTAA+AGG | 0.447226 | 3_3:+85129080 | None:intergenic |
| GCAGGATGTGGTGCATAATC+CGG | 0.457419 | 3_3:+85127605 | None:intergenic |
| AGGTGAAGAGTGGAGGAGAT+GGG | 0.465253 | 3_3:-85127697 | Msa0479950:CDS |
| TGACTTATTTGCAGACCAAA+TGG | 0.466130 | 3_3:-85126272 | Msa0479950:intron |
| GAAGGAGATGATTGACAAGA+TGG | 0.467393 | 3_3:-85127180 | Msa0479950:CDS |
| TTGGTACATAATAATAAGAA+TGG | 0.481356 | 3_3:+85128975 | None:intergenic |
| CATATTTACATGGCAAGAAA+GGG | 0.486267 | 3_3:+85128681 | None:intergenic |
| AACTCATCTTCAAATGGCAG+TGG | 0.487751 | 3_3:-85128625 | Msa0479950:CDS |
| TGCACTTTCTCATATTTACA+TGG | 0.491468 | 3_3:+85128671 | None:intergenic |
| AATTCTACTATTCTTGAAGC+AGG | 0.491817 | 3_3:-85128559 | Msa0479950:intron |
| AAATAGAGAAAATTAAGATC+TGG | 0.494243 | 3_3:+85129013 | None:intergenic |
| TGTGTAGTTGAGGTGAAGAG+TGG | 0.494302 | 3_3:-85127707 | Msa0479950:intron |
| TTGAAGATGGAGGATGGAAC+TGG | 0.494500 | 3_3:-85127575 | Msa0479950:intron |
| GATAAAATGGTTTGTGTGAA+AGG | 0.496281 | 3_3:-85128811 | Msa0479950:CDS |
| GGAAGCAGCATATTGCTGAT+TGG | 0.498562 | 3_3:-85125486 | Msa0479950:three_prime_UTR |
| ACTCAGTCCCCTGGTTCAGA+TGG | 0.500433 | 3_3:-85126496 | Msa0479950:CDS |
| AAGTATTTGGCTTACAGTGA+TGG | 0.500663 | 3_3:-85126550 | Msa0479950:CDS |
| AAGTGTCTTGTTAATGGCAG+CGG | 0.507255 | 3_3:-85127371 | Msa0479950:CDS |
| TGCGTCCATAACAGCCCTCA+TGG | 0.507711 | 3_3:-85127638 | Msa0479950:CDS |
| GTGTATAATGGTTCATCCAT+TGG | 0.509325 | 3_3:-85125507 | Msa0479950:three_prime_UTR |
| AATAATGGGCCATCTGAACC+AGG | 0.513864 | 3_3:+85126487 | None:intergenic |
| GTGCAAAAGATTGAACTCCT+TGG | 0.528331 | 3_3:+85126232 | None:intergenic |
| TGTGTAAATAAATCCAGCAT+TGG | 0.528811 | 3_3:-85125694 | Msa0479950:three_prime_UTR |
| CAGCAATATGCTGCTTCCAA+TGG | 0.530953 | 3_3:+85125491 | None:intergenic |
| AGTTTCAACTCATCTTCAAA+TGG | 0.535944 | 3_3:-85128631 | Msa0479950:CDS |
| CAAAACTATTACCAGCGTCT+TGG | 0.537387 | 3_3:+85126177 | None:intergenic |
| AACTCCTTGGTTTCAACACA+AGG | 0.539583 | 3_3:+85126245 | None:intergenic |
| AGTGTTGCTATGCCTATGAT+TGG | 0.546554 | 3_3:-85128775 | Msa0479950:CDS |
| ATCCAGCATTGGAATGTCGA+TGG | 0.547306 | 3_3:-85125683 | Msa0479950:three_prime_UTR |
| TTACCTTTACACAAACAAGA+AGG | 0.550001 | 3_3:-85129083 | Msa0479950:five_prime_UTR |
| ATGGGTTCATAGTCAAAATG+AGG | 0.552865 | 3_3:-85127679 | Msa0479950:CDS |
| AAATTAAATTAAAACGAGAT+CGG | 0.553672 | 3_3:-85128942 | Msa0479950:five_prime_UTR |
| TGCTCAGCTATATCTTTCCA+AGG | 0.554143 | 3_3:-85126985 | Msa0479950:intron |
| TCCTGCAATTGTGTTGAAGA+TGG | 0.554227 | 3_3:-85127588 | Msa0479950:CDS |
| ATGAATTACCTTGCATCTGA+CGG | 0.554836 | 3_3:+85126816 | None:intergenic |
| TTCAACACAATTGCAGGATG+TGG | 0.559028 | 3_3:+85127593 | None:intergenic |
| AAGGAGATGATTGACAAGAT+GGG | 0.563238 | 3_3:-85127179 | Msa0479950:CDS |
| GATCGGTGATTCATCTTACA+AGG | 0.563496 | 3_3:-85128925 | Msa0479950:intron |
| AAACTGTCAACTCAGTCCCC+TGG | 0.581648 | 3_3:-85126505 | Msa0479950:CDS |
| TTGTAGTAGAATTGAATTGT+GGG | 0.582297 | 3_3:-85128737 | Msa0479950:CDS |
| TTCACTACTTGATATAAAGT+AGG | 0.583362 | 3_3:+85127200 | None:intergenic |
| GTTGTAGTAGAATTGAATTG+TGG | 0.585443 | 3_3:-85128738 | Msa0479950:CDS |
| TACTTTATATCAAGTAGTGA+AGG | 0.586601 | 3_3:-85127198 | Msa0479950:CDS |
| CATTATTTACTGAACTGGAT+CGG | 0.591707 | 3_3:-85126471 | Msa0479950:intron |
| CAACATTGCCGTCAGATGCA+AGG | 0.598286 | 3_3:-85126824 | Msa0479950:intron |
| ATGCAACTCTAGCTCTGTGG+AGG | 0.600499 | 3_3:-85125943 | Msa0479950:CDS |
| TTCATAGTCAAAATGAGGGA+TGG | 0.606214 | 3_3:-85127674 | Msa0479950:CDS |
| CCGGAAGAAGTCCTCCATGA+GGG | 0.609077 | 3_3:+85127624 | None:intergenic |
| AGTTACTAAGAGAGTTCAGG+AGG | 0.616947 | 3_3:-85127015 | Msa0479950:CDS |
| GCTGCCATTAACAAGACACT+TGG | 0.631772 | 3_3:+85127373 | None:intergenic |
| GACTTATGAGTATACACAAG+GGG | 0.633649 | 3_3:+85125621 | None:intergenic |
| GTAGTTGAGGTGAAGAGTGG+AGG | 0.641244 | 3_3:-85127704 | Msa0479950:intron |
| TGATAGCATCTGAAGGTCGA+AGG | 0.644393 | 3_3:+85126845 | None:intergenic |
| ATTGTGTTGAAGATGGAGGA+TGG | 0.647763 | 3_3:-85127581 | Msa0479950:CDS |
| TGGGTTCATAGTCAAAATGA+GGG | 0.648695 | 3_3:-85127678 | Msa0479950:CDS |
| CTGATGCAACTCTAGCTCTG+TGG | 0.654401 | 3_3:-85125946 | Msa0479950:CDS |
| TAAGCCTTGTGTTGAAACCA+AGG | 0.655141 | 3_3:-85126249 | Msa0479950:CDS |
| GAAGAGCGCTACCAAGACGC+TGG | 0.659837 | 3_3:-85126188 | Msa0479950:intron |
| ATGATTGGACCAATCAACGC+TGG | 0.660475 | 3_3:-85128760 | Msa0479950:CDS |
| TGCAACTCTAGCTCTGTGGA+GGG | 0.660642 | 3_3:-85125942 | Msa0479950:CDS |
| TAATGGGCCATCTGAACCAG+GGG | 0.661956 | 3_3:+85126489 | None:intergenic |
| TACACAAGGGGAGAAGCGAA+CGG | 0.666819 | 3_3:+85125633 | None:intergenic |
| ACCATTATACACATTAACAG+TGG | 0.666861 | 3_3:+85125518 | None:intergenic |
| GCAATGTTGATAGCATCTGA+AGG | 0.668734 | 3_3:+85126838 | None:intergenic |
| TGTAGTAGAATTGAATTGTG+GGG | 0.671461 | 3_3:-85128736 | Msa0479950:CDS |
| AAGACTTATGAGTATACACA+AGG | 0.674289 | 3_3:+85125619 | None:intergenic |
| ATAATGGGCCATCTGAACCA+GGG | 0.677787 | 3_3:+85126488 | None:intergenic |
| TGCAATTGTGTTGAAGATGG+AGG | 0.695717 | 3_3:-85127585 | Msa0479950:CDS |
| TCCGGAAGAAGTCCTCCATG+AGG | 0.699210 | 3_3:+85127623 | None:intergenic |
| AGACTTATGAGTATACACAA+GGG | 0.729227 | 3_3:+85125620 | None:intergenic |
| GTCCATAACAGCCCTCATGG+AGG | 0.747707 | 3_3:-85127635 | Msa0479950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATAAATAATT+GGG | + | chr3_3:85126324-85126343 | None:intergenic | 0.0% |
| !! | AATAAAATAAAATAAATAAT+TGG | + | chr3_3:85126325-85126344 | None:intergenic | 0.0% |
| !!! | TTAATAACTAATTTGAAATT+AGG | - | chr3_3:85125644-85125663 | Msa0479950:three_prime_UTR | 10.0% |
| !!! | TGAAAATAAAATAGTTTTAT+GGG | + | chr3_3:85126114-85126133 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAAATAGTTTTA+TGG | + | chr3_3:85126115-85126134 | None:intergenic | 10.0% |
| !! | AAATTAAATTAAAACGAGAT+CGG | - | chr3_3:85125563-85125582 | Msa0479950:three_prime_UTR | 15.0% |
| !!! | ATTTGAAATTAGGTTAATTT+TGG | - | chr3_3:85125654-85125673 | Msa0479950:three_prime_UTR | 15.0% |
| !!! | GTGAAAAATTGTTTTTTTAT+TGG | - | chr3_3:85126004-85126023 | Msa0479950:intron | 15.0% |
| !!! | CAGTTACTTTAAAAAAAAAA+TGG | + | chr3_3:85126689-85126708 | None:intergenic | 15.0% |
| !!! | ATTATATAAGATAGCAATTT+TGG | - | chr3_3:85128759-85128778 | Msa0479950:CDS | 15.0% |
| !! | AAATAGAGAAAATTAAGATC+TGG | + | chr3_3:85125495-85125514 | None:intergenic | 20.0% |
| !! | TTGGTACATAATAATAAGAA+TGG | + | chr3_3:85125533-85125552 | None:intergenic | 20.0% |
| !! | ATTACTCATAAAAAAGTTGT+AGG | + | chr3_3:85126472-85126491 | None:intergenic | 20.0% |
| !! | TATCTATACACTAAAGAAAT+TGG | - | chr3_3:85126507-85126526 | Msa0479950:CDS | 20.0% |
| !! | AGAGTAAAATAAAATTTCCA+AGG | + | chr3_3:85126743-85126762 | None:intergenic | 20.0% |
| !!! | GAAATTTTATTTTACTCTCA+TGG | - | chr3_3:85126745-85126764 | Msa0479950:intron | 20.0% |
| !!! | TTGTGAAAATAAATTTGTTG+TGG | - | chr3_3:85126769-85126788 | Msa0479950:intron | 20.0% |
| !!! | TATCATACAAGTTTACTTTT+TGG | - | chr3_3:85127032-85127051 | Msa0479950:CDS | 20.0% |
| !!! | TTGGATCCTATATATTATTT+TGG | - | chr3_3:85127051-85127070 | Msa0479950:intron | 20.0% |
| !! | TCATCACCAAAATAATATAT+AGG | + | chr3_3:85127060-85127079 | None:intergenic | 20.0% |
| !! | ACTACAATACAATTAAGATT+AGG | + | chr3_3:85127394-85127413 | None:intergenic | 20.0% |
| !! | TTGTTTATCAAAGATTTAAC+TGG | - | chr3_3:85127898-85127917 | Msa0479950:intron | 20.0% |
| ! | TTGTAGTAGAATTGAATTGT+GGG | - | chr3_3:85125768-85125787 | Msa0479950:intron | 25.0% |
| ! | TCATATATGCTTAGTTTAGT+TGG | - | chr3_3:85125982-85126001 | Msa0479950:intron | 25.0% |
| ! | GTAAATTAATCACATGTGTA+TGG | - | chr3_3:85126380-85126399 | Msa0479950:intron | 25.0% |
| ! | TAAAAAAGTTGTAGGTATAG+TGG | + | chr3_3:85126464-85126483 | None:intergenic | 25.0% |
| ! | AATTTGAACTATATCACTTG+AGG | + | chr3_3:85126610-85126629 | None:intergenic | 25.0% |
| ! | ATGGAGAATCAATAAAACAA+CGG | + | chr3_3:85126670-85126689 | None:intergenic | 25.0% |
| ! | AAAGACATACAAACGATTAT+GGG | + | chr3_3:85126966-85126985 | None:intergenic | 25.0% |
| ! | AAAAGACATACAAACGATTA+TGG | + | chr3_3:85126967-85126986 | None:intergenic | 25.0% |
| !! | ACATTTTACTACTAATGCAA+TGG | + | chr3_3:85127203-85127222 | None:intergenic | 25.0% |
| ! | TTGCATTAGTAGTAAAATGT+TGG | - | chr3_3:85127203-85127222 | Msa0479950:CDS | 25.0% |
| ! | GAGAATATGTTACAGAAAAA+CGG | + | chr3_3:85127242-85127261 | None:intergenic | 25.0% |
| ! | TTCACTACTTGATATAAAGT+AGG | + | chr3_3:85127308-85127327 | None:intergenic | 25.0% |
| ! | TACTTTATATCAAGTAGTGA+AGG | - | chr3_3:85127307-85127326 | Msa0479950:intron | 25.0% |
| !!! | GTATTACTTGTTTTTGGTAT+AGG | - | chr3_3:85127606-85127625 | Msa0479950:CDS | 25.0% |
| !!! | AAATACTTGTTGACTTGTAT+AGG | + | chr3_3:85127943-85127962 | None:intergenic | 25.0% |
| ! | TATACAAGTCAACAAGTATT+TGG | - | chr3_3:85127942-85127961 | Msa0479950:intron | 25.0% |
| !!! | GTTTTTGAAGATACATTTCA+AGG | - | chr3_3:85128060-85128079 | Msa0479950:intron | 25.0% |
| ! | GAAAATCAATAATGATTAGC+AGG | + | chr3_3:85128467-85128486 | None:intergenic | 25.0% |
| TTACCTTTACACAAACAAGA+AGG | - | chr3_3:85125422-85125441 | Msa0479950:three_prime_UTR | 30.0% | |
| ! | ATTCCTTCTTGTTTGTGTAA+AGG | + | chr3_3:85125428-85125447 | None:intergenic | 30.0% |
| GAAATGAAGAGAAAAAGAAG+AGG | + | chr3_3:85125458-85125477 | None:intergenic | 30.0% | |
| !!! | TAGGTTAATTTTGGTTGTGT+AGG | - | chr3_3:85125663-85125682 | Msa0479950:three_prime_UTR | 30.0% |
| GTAGGTTTGAATGGATAAAA+TGG | - | chr3_3:85125681-85125700 | Msa0479950:three_prime_UTR | 30.0% | |
| ! | GATAAAATGGTTTGTGTGAA+AGG | - | chr3_3:85125694-85125713 | Msa0479950:three_prime_UTR | 30.0% |
| GTTGTAGTAGAATTGAATTG+TGG | - | chr3_3:85125767-85125786 | Msa0479950:intron | 30.0% | |
| TGTAGTAGAATTGAATTGTG+GGG | - | chr3_3:85125769-85125788 | Msa0479950:intron | 30.0% | |
| CATATTTACATGGCAAGAAA+GGG | + | chr3_3:85125827-85125846 | None:intergenic | 30.0% | |
| TCATATTTACATGGCAAGAA+AGG | + | chr3_3:85125828-85125847 | None:intergenic | 30.0% | |
| TGCACTTTCTCATATTTACA+TGG | + | chr3_3:85125837-85125856 | None:intergenic | 30.0% | |
| AGTTTCAACTCATCTTCAAA+TGG | - | chr3_3:85125874-85125893 | Msa0479950:intron | 30.0% | |
| AATTCTACTATTCTTGAAGC+AGG | - | chr3_3:85125946-85125965 | Msa0479950:CDS | 30.0% | |
| ACACTAATTACTAACTCATG+CGG | + | chr3_3:85126049-85126068 | None:intergenic | 30.0% | |
| ATAAATAATTGGGTCTGTAC+TGG | + | chr3_3:85126314-85126333 | None:intergenic | 30.0% | |
| ! | ATACTATTGGATTTTACGTC+AGG | + | chr3_3:85126438-85126457 | None:intergenic | 30.0% |
| ! | TTTTATAAGACTAGAAGCCT+TGG | - | chr3_3:85126723-85126742 | Msa0479950:intron | 30.0% |
| AAGACATACAAACGATTATG+GGG | + | chr3_3:85126965-85126984 | None:intergenic | 30.0% | |
| TTCATGATGCAACATAGAAA+GGG | + | chr3_3:85126993-85127012 | None:intergenic | 30.0% | |
| ATTCATGATGCAACATAGAA+AGG | + | chr3_3:85126994-85127013 | None:intergenic | 30.0% | |
| ! | TCTCTTCCAATGTAATTTTG+TGG | - | chr3_3:85127084-85127103 | Msa0479950:intron | 30.0% |
| GATGAACCACAAAATTACAT+TGG | + | chr3_3:85127093-85127112 | None:intergenic | 30.0% | |
| ! | TGGTTCATCTTTATTTGTAG+TGG | - | chr3_3:85127104-85127123 | Msa0479950:intron | 30.0% |
| ! | ACAGAAAAACGGAATCATTT+TGG | + | chr3_3:85127231-85127250 | None:intergenic | 30.0% |
| GAACCAAACAACTAACTATA+TGG | - | chr3_3:85127264-85127283 | Msa0479950:intron | 30.0% | |
| CAACCATATAGTTAGTTGTT+TGG | + | chr3_3:85127270-85127289 | None:intergenic | 30.0% | |
| ! | AACTATATGGTTGATGTAAC+AGG | - | chr3_3:85127277-85127296 | Msa0479950:intron | 30.0% |
| !! | AAATCTGGTTTCTTTTTGTG+TGG | + | chr3_3:85127578-85127597 | None:intergenic | 30.0% |
| !! | CTGACAGTATTACTTGTTTT+TGG | - | chr3_3:85127600-85127619 | Msa0479950:CDS | 30.0% |
| !!! | TACTTGTTTTTGGTATAGGT+TGG | - | chr3_3:85127610-85127629 | Msa0479950:CDS | 30.0% |
| AAAACTTCTAGGTTCCATTT+AGG | + | chr3_3:85127835-85127854 | None:intergenic | 30.0% | |
| ! | TAAATGGAACCTAGAAGTTT+TGG | - | chr3_3:85127834-85127853 | Msa0479950:intron | 30.0% |
| GAATTTGATCCAAAACTTCT+AGG | + | chr3_3:85127846-85127865 | None:intergenic | 30.0% | |
| GATCCAGTTCAGTAAATAAT+GGG | + | chr3_3:85128035-85128054 | None:intergenic | 30.0% | |
| CATTATTTACTGAACTGGAT+CGG | - | chr3_3:85128034-85128053 | Msa0479950:intron | 30.0% | |
| AGTATTCATAATCTCTGTTC+TGG | - | chr3_3:85128104-85128123 | Msa0479950:intron | 30.0% | |
| TCACAAGATTACATTTCTTG+TGG | - | chr3_3:85128485-85128504 | Msa0479950:intron | 30.0% | |
| GGACCAACTTAATCAATTTA+GGG | - | chr3_3:85128584-85128603 | Msa0479950:CDS | 30.0% | |
| TGTGTAAATAAATCCAGCAT+TGG | - | chr3_3:85128811-85128830 | Msa0479950:CDS | 30.0% | |
| AGACTTATGAGTATACACAA+GGG | + | chr3_3:85128888-85128907 | None:intergenic | 30.0% | |
| AAGACTTATGAGTATACACA+AGG | + | chr3_3:85128889-85128908 | None:intergenic | 30.0% | |
| TCCACTGTTAATGTGTATAA+TGG | - | chr3_3:85128986-85129005 | Msa0479950:five_prime_UTR | 30.0% | |
| ACCATTATACACATTAACAG+TGG | + | chr3_3:85128990-85129009 | None:intergenic | 30.0% | |
| ATGAAATGACAAACAGAAAC+AGG | - | chr3_3:85129121-85129140 | Msa0479950:five_prime_UTR | 30.0% | |
| TTTGGTTGTGTAGGTTTGAA+TGG | - | chr3_3:85125672-85125691 | Msa0479950:three_prime_UTR | 35.0% | |
| GGTATAGTGGTACATACTAT+TGG | + | chr3_3:85126451-85126470 | None:intergenic | 35.0% | |
| GATATAGTTCAAATTCCACC+CGG | - | chr3_3:85126615-85126634 | Msa0479950:intron | 35.0% | |
| ATATAGTTCAAATTCCACCC+GGG | - | chr3_3:85126616-85126635 | Msa0479950:intron | 35.0% | |
| ! | GTGGTTTTTATGTGTAGTTG+AGG | - | chr3_3:85126788-85126807 | Msa0479950:intron | 35.0% |
| ATGGGTTCATAGTCAAAATG+AGG | - | chr3_3:85126826-85126845 | Msa0479950:CDS | 35.0% | |
| TGGGTTCATAGTCAAAATGA+GGG | - | chr3_3:85126827-85126846 | Msa0479950:CDS | 35.0% | |
| TTCATAGTCAAAATGAGGGA+TGG | - | chr3_3:85126831-85126850 | Msa0479950:CDS | 35.0% | |
| TGTTGCATCATGAATCTCTA+TGG | - | chr3_3:85126999-85127018 | Msa0479950:CDS | 35.0% | |
| AAGGAGATGATTGACAAGAT+GGG | - | chr3_3:85127326-85127345 | Msa0479950:intron | 35.0% | |
| ACAATATATCTTTCGTGTGC+AGG | - | chr3_3:85127454-85127473 | Msa0479950:intron | 35.0% | |
| AAGAGTTACTAAGAGAGTTC+AGG | - | chr3_3:85127487-85127506 | Msa0479950:intron | 35.0% | |
| ! | GGAAAGTATGAACTTTACCT+TGG | + | chr3_3:85127540-85127559 | None:intergenic | 35.0% |
| ! | TGGTTTCTTTTTGTGTGGTT+TGG | + | chr3_3:85127573-85127592 | None:intergenic | 35.0% |
| GTAATACTGTCAGACAAATC+TGG | + | chr3_3:85127593-85127612 | None:intergenic | 35.0% | |
| ATGAATTACCTTGCATCTGA+CGG | + | chr3_3:85127692-85127711 | None:intergenic | 35.0% | |
| AATCCAAGGAATGTGAAACT+TGG | + | chr3_3:85127784-85127803 | None:intergenic | 35.0% | |
| ! | GATTCACTGGTACAAAGTTT+TGG | - | chr3_3:85127800-85127819 | Msa0479950:intron | 35.0% |
| TTTGGCAAATGTTGCCTAAA+TGG | - | chr3_3:85127818-85127837 | Msa0479950:intron | 35.0% | |
| ! | AAGTATTTGGCTTACAGTGA+TGG | - | chr3_3:85127955-85127974 | Msa0479950:intron | 35.0% |
| GGAATGAGAGTAATTGAATC+AGG | - | chr3_3:85127976-85127995 | Msa0479950:intron | 35.0% | |
| CGATCCAGTTCAGTAAATAA+TGG | + | chr3_3:85128036-85128055 | None:intergenic | 35.0% | |
| AGATTCGAAGATATCTTTCG+AGG | + | chr3_3:85128153-85128172 | None:intergenic | 35.0% | |
| TATCTTCGAATCTGTCTCAT+TGG | - | chr3_3:85128160-85128179 | Msa0479950:intron | 35.0% | |
| TGACTTATTTGCAGACCAAA+TGG | - | chr3_3:85128233-85128252 | Msa0479950:intron | 35.0% | |
| CAAGAGTAAAAACACAGGTA+AGG | + | chr3_3:85128372-85128391 | None:intergenic | 35.0% | |
| !! | CTTACCTGTGTTTTTACTCT+TGG | - | chr3_3:85128370-85128389 | Msa0479950:intron | 35.0% |
| GGGACCAACTTAATCAATTT+AGG | - | chr3_3:85128583-85128602 | Msa0479950:CDS | 35.0% | |
| CTGCCCTAAATTGATTAAGT+TGG | + | chr3_3:85128590-85128609 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGCGAATAAC+AGG | - | chr3_3:85128607-85128626 | Msa0479950:CDS | 35.0% | |
| AAAGAAAAGAGACCAGAAGA+AGG | + | chr3_3:85128716-85128735 | None:intergenic | 35.0% | |
| GACTTATGAGTATACACAAG+GGG | + | chr3_3:85128887-85128906 | None:intergenic | 35.0% | |
| GTGTATAATGGTTCATCCAT+TGG | - | chr3_3:85128998-85129017 | Msa0479950:five_prime_UTR | 35.0% | |
| GATCGGTGATTCATCTTACA+AGG | - | chr3_3:85125580-85125599 | Msa0479950:three_prime_UTR | 40.0% | |
| ! | AGTGTTGCTATGCCTATGAT+TGG | - | chr3_3:85125730-85125749 | Msa0479950:intron | 40.0% |
| ACATGGCAAGAAAGGGAATT+AGG | + | chr3_3:85125820-85125839 | None:intergenic | 40.0% | |
| AACTCATCTTCAAATGGCAG+TGG | - | chr3_3:85125880-85125899 | Msa0479950:intron | 40.0% | |
| TTCAAATGGCAGTGGAAGTA+TGG | - | chr3_3:85125888-85125907 | Msa0479950:intron | 40.0% | |
| ATGCTGCCAAAGTTAGCAAT+CGG | - | chr3_3:85126186-85126205 | Msa0479950:intron | 40.0% | |
| ! | ATCACACCGATTGCTAACTT+TGG | + | chr3_3:85126195-85126214 | None:intergenic | 40.0% |
| ATCGAACTAACTGTAGTGTG+TGG | - | chr3_3:85126213-85126232 | Msa0479950:CDS | 40.0% | |
| TCGAACTAACTGTAGTGTGT+GGG | - | chr3_3:85126214-85126233 | Msa0479950:CDS | 40.0% | |
| !!! | AGGCACAATTTTTTGCAGGT+CGG | + | chr3_3:85126535-85126554 | None:intergenic | 40.0% |
| !!! | AGTGAGGCACAATTTTTTGC+AGG | + | chr3_3:85126539-85126558 | None:intergenic | 40.0% |
| AAAATCAAGTTATCGCCCAG+GGG | + | chr3_3:85126583-85126602 | None:intergenic | 40.0% | |
| CAAAATCAAGTTATCGCCCA+GGG | + | chr3_3:85126584-85126603 | None:intergenic | 40.0% | |
| ACAAAATCAAGTTATCGCCC+AGG | + | chr3_3:85126585-85126604 | None:intergenic | 40.0% | |
| TATAGTTCAAATTCCACCCG+GGG | - | chr3_3:85126617-85126636 | Msa0479950:intron | 40.0% | |
| ! | ATCATTTTACAATAGCCCCC+GGG | + | chr3_3:85126636-85126655 | None:intergenic | 40.0% |
| ! | GATCATTTTACAATAGCCCC+CGG | + | chr3_3:85126637-85126656 | None:intergenic | 40.0% |
| TTCAACACAATTGCAGGATG+TGG | + | chr3_3:85126915-85126934 | None:intergenic | 40.0% | |
| TCCTGCAATTGTGTTGAAGA+TGG | - | chr3_3:85126917-85126936 | Msa0479950:intron | 40.0% | |
| TCCATCTTCAACACAATTGC+AGG | + | chr3_3:85126921-85126940 | None:intergenic | 40.0% | |
| TGCAATTGTGTTGAAGATGG+AGG | - | chr3_3:85126920-85126939 | Msa0479950:intron | 40.0% | |
| ATTGTGTTGAAGATGGAGGA+TGG | - | chr3_3:85126924-85126943 | Msa0479950:intron | 40.0% | |
| ! | GATGCCAAGTGTCTTGTTAA+TGG | - | chr3_3:85127128-85127147 | Msa0479950:intron | 40.0% |
| ! | AAGTGTCTTGTTAATGGCAG+CGG | - | chr3_3:85127134-85127153 | Msa0479950:intron | 40.0% |
| GAAGGAGATGATTGACAAGA+TGG | - | chr3_3:85127325-85127344 | Msa0479950:intron | 40.0% | |
| ! | TAGGAGTATGCAACAGCAAA+GGG | + | chr3_3:85127375-85127394 | None:intergenic | 40.0% |
| ! | TTAGGAGTATGCAACAGCAA+AGG | + | chr3_3:85127376-85127395 | None:intergenic | 40.0% |
| AGTTACTAAGAGAGTTCAGG+AGG | - | chr3_3:85127490-85127509 | Msa0479950:intron | 40.0% | |
| TGCTCAGCTATATCTTTCCA+AGG | - | chr3_3:85127520-85127539 | Msa0479950:intron | 40.0% | |
| !!! | TTTTTGTGTGGTTTGGTGAG+GGG | + | chr3_3:85127566-85127585 | None:intergenic | 40.0% |
| !!! | CTTTTTGTGTGGTTTGGTGA+GGG | + | chr3_3:85127567-85127586 | None:intergenic | 40.0% |
| !!! | TCTTTTTGTGTGGTTTGGTG+AGG | + | chr3_3:85127568-85127587 | None:intergenic | 40.0% |
| !! | GCAATGTTGATAGCATCTGA+AGG | + | chr3_3:85127670-85127689 | None:intergenic | 40.0% |
| TTTCCACATGCAACTTACAC+AGG | + | chr3_3:85127748-85127767 | None:intergenic | 40.0% | |
| TTCACATTCCTTGGATTCAC+TGG | - | chr3_3:85127787-85127806 | Msa0479950:intron | 40.0% | |
| ACTTTGTACCAGTGAATCCA+AGG | + | chr3_3:85127798-85127817 | None:intergenic | 40.0% | |
| TGGCCCATTATTTACTGAAC+TGG | - | chr3_3:85128029-85128048 | Msa0479950:intron | 40.0% | |
| ATTTACTGAACTGGATCGGT+AGG | - | chr3_3:85128038-85128057 | Msa0479950:intron | 40.0% | |
| TCAACACAAGGCTTACCATT+TGG | + | chr3_3:85128251-85128270 | None:intergenic | 40.0% | |
| ! | TAAGCCTTGTGTTGAAACCA+AGG | - | chr3_3:85128256-85128275 | Msa0479950:intron | 40.0% |
| AACTCCTTGGTTTCAACACA+AGG | + | chr3_3:85128263-85128282 | None:intergenic | 40.0% | |
| GTGCAAAAGATTGAACTCCT+TGG | + | chr3_3:85128276-85128295 | None:intergenic | 40.0% | |
| CAAAACTATTACCAGCGTCT+TGG | + | chr3_3:85128331-85128350 | None:intergenic | 40.0% | |
| !! | ACCTGTGTTTTTACTCTTGG+AGG | - | chr3_3:85128373-85128392 | Msa0479950:intron | 40.0% |
| ACCTCCAAGAGTAAAAACAC+AGG | + | chr3_3:85128377-85128396 | None:intergenic | 40.0% | |
| GGTTGTGCTGTAAGAATTAC+AGG | - | chr3_3:85129040-85129059 | Msa0479950:five_prime_UTR | 40.0% | |
| !! | GCGTTGATTGGTCCAATCAT+AGG | + | chr3_3:85125745-85125764 | None:intergenic | 45.0% |
| ATGATTGGACCAATCAACGC+TGG | - | chr3_3:85125745-85125764 | Msa0479950:intron | 45.0% | |
| !! | CTACTACAACCAGCGTTGAT+TGG | + | chr3_3:85125757-85125776 | None:intergenic | 45.0% |
| TCAGCTTAGTGGCGAGAATA+GGG | - | chr3_3:85126246-85126265 | Msa0479950:CDS | 45.0% | |
| ATGTGTATGGTGTACTCCAG+TGG | - | chr3_3:85126393-85126412 | Msa0479950:intron | 45.0% | |
| ATGGTGTACTCCAGTGGTAA+TGG | - | chr3_3:85126399-85126418 | Msa0479950:intron | 45.0% | |
| ! | GATTTTACGTCAGGTACTCC+GGG | + | chr3_3:85126429-85126448 | None:intergenic | 45.0% |
| ! | GGATTTTACGTCAGGTACTC+CGG | + | chr3_3:85126430-85126449 | None:intergenic | 45.0% |
| !!! | TGTGCCTCACTGATTTTGTG+AGG | - | chr3_3:85126548-85126567 | Msa0479950:CDS | 45.0% |
| ATAGTTCAAATTCCACCCGG+GGG | - | chr3_3:85126618-85126637 | Msa0479950:intron | 45.0% | |
| TGTGTAGTTGAGGTGAAGAG+TGG | - | chr3_3:85126798-85126817 | Msa0479950:intron | 45.0% | |
| TTGAAGATGGAGGATGGAAC+TGG | - | chr3_3:85126930-85126949 | Msa0479950:intron | 45.0% | |
| GCTGCCATTAACAAGACACT+TGG | + | chr3_3:85127135-85127154 | None:intergenic | 45.0% | |
| !!! | TTTTGTGTGGTTTGGTGAGG+GGG | + | chr3_3:85127565-85127584 | None:intergenic | 45.0% |
| TGATAGCATCTGAAGGTCGA+AGG | + | chr3_3:85127663-85127682 | None:intergenic | 45.0% | |
| TCACCTGTGTAAGTTGCATG+TGG | - | chr3_3:85127742-85127761 | Msa0479950:intron | 45.0% | |
| CAGCCAAGTTTCACATTCCT+TGG | - | chr3_3:85127778-85127797 | Msa0479950:intron | 45.0% | |
| TGTATAGGCACCTACAACGT+TGG | + | chr3_3:85127928-85127947 | None:intergenic | 45.0% | |
| !! | ATAATGGGCCATCTGAACCA+GGG | + | chr3_3:85128020-85128039 | None:intergenic | 45.0% |
| !! | AATAATGGGCCATCTGAACC+AGG | + | chr3_3:85128021-85128040 | None:intergenic | 45.0% |
| ACTCCAACTCAACCTTCTTC+TGG | - | chr3_3:85128701-85128720 | Msa0479950:CDS | 45.0% | |
| AGACCAGAAGAAGGTTGAGT+TGG | + | chr3_3:85128707-85128726 | None:intergenic | 45.0% | |
| ! | TTTGGTTCCGTTTCAGATCG+TGG | - | chr3_3:85128777-85128796 | Msa0479950:CDS | 45.0% |
| ! | AGAGTGTCCACGATCTGAAA+CGG | + | chr3_3:85128787-85128806 | None:intergenic | 45.0% |
| ! | ATCCAGCATTGGAATGTCGA+TGG | - | chr3_3:85128822-85128841 | Msa0479950:exon | 45.0% |
| TTCCATCGACATTCCAATGC+TGG | + | chr3_3:85128827-85128846 | None:intergenic | 45.0% | |
| ! | CAGCAATATGCTGCTTCCAA+TGG | + | chr3_3:85129017-85129036 | None:intergenic | 45.0% |
| GGAAGCAGCATATTGCTGAT+TGG | - | chr3_3:85129019-85129038 | Msa0479950:five_prime_UTR | 45.0% | |
| !!! | ATTTAATTTAATTTAACTAT+TGG | + | chr3_3:85125552-85125571 | None:intergenic | 5.0% |
| !! | AAAATTGAATTAAATTAATT+AGG | + | chr3_3:85125619-85125638 | None:intergenic | 5.0% |
| AACTGTAGTGTGTGGGCAAG+AGG | - | chr3_3:85126221-85126240 | Msa0479950:CDS | 50.0% | |
| GTCAGCTTAGTGGCGAGAAT+AGG | - | chr3_3:85126245-85126264 | Msa0479950:CDS | 50.0% | |
| CAGCTTAGTGGCGAGAATAG+GGG | - | chr3_3:85126247-85126266 | Msa0479950:CDS | 50.0% | |
| CTGGCCTCACAAAATCAGTG+AGG | + | chr3_3:85126555-85126574 | None:intergenic | 50.0% | |
| !!! | CTCACTGATTTTGTGAGGCC+AGG | - | chr3_3:85126553-85126572 | Msa0479950:CDS | 50.0% |
| ! | ATTTTACAATAGCCCCCGGG+TGG | + | chr3_3:85126633-85126652 | None:intergenic | 50.0% |
| GTAGTTGAGGTGAAGAGTGG+AGG | - | chr3_3:85126801-85126820 | Msa0479950:intron | 50.0% | |
| AGGTGAAGAGTGGAGGAGAT+GGG | - | chr3_3:85126808-85126827 | Msa0479950:intron | 50.0% | |
| GCAGGATGTGGTGCATAATC+CGG | + | chr3_3:85126903-85126922 | None:intergenic | 50.0% | |
| CAACATTGCCGTCAGATGCA+AGG | - | chr3_3:85127681-85127700 | Msa0479950:CDS | 50.0% | |
| AACTGGTCCACCAACGTTGT+AGG | - | chr3_3:85127915-85127934 | Msa0479950:intron | 50.0% | |
| ATAGGCACCTACAACGTTGG+TGG | + | chr3_3:85127925-85127944 | None:intergenic | 50.0% | |
| AAACTGTCAACTCAGTCCCC+TGG | - | chr3_3:85128000-85128019 | Msa0479950:intron | 50.0% | |
| ! | TAATGGGCCATCTGAACCAG+GGG | + | chr3_3:85128019-85128038 | None:intergenic | 50.0% |
| !! | CTGATGCAACTCTAGCTCTG+TGG | - | chr3_3:85128559-85128578 | Msa0479950:intron | 50.0% |
| !! | ATGCAACTCTAGCTCTGTGG+AGG | - | chr3_3:85128562-85128581 | Msa0479950:CDS | 50.0% |
| !! | TGCAACTCTAGCTCTGTGGA+GGG | - | chr3_3:85128563-85128582 | Msa0479950:CDS | 50.0% |
| TACACAAGGGGAGAAGCGAA+CGG | + | chr3_3:85128875-85128894 | None:intergenic | 50.0% | |
| !! | GGCAAGAGGTGTCAGCTTAG+TGG | - | chr3_3:85126235-85126254 | Msa0479950:CDS | 55.0% |
| CTTAGTGGCGAGAATAGGGG+CGG | - | chr3_3:85126250-85126269 | Msa0479950:CDS | 55.0% | |
| AATAGGGGCGGACCTAGACT+AGG | - | chr3_3:85126262-85126281 | Msa0479950:intron | 55.0% | |
| GACCTAGACTAGGCCCATAC+CGG | - | chr3_3:85126272-85126291 | Msa0479950:intron | 55.0% | |
| AGCACTTGCCACACCGGTAT+GGG | + | chr3_3:85126288-85126307 | None:intergenic | 55.0% | |
| TAGCACTTGCCACACCGGTA+TGG | + | chr3_3:85126289-85126308 | None:intergenic | 55.0% | |
| TGGTGTAGCACTTGCCACAC+CGG | + | chr3_3:85126294-85126313 | None:intergenic | 55.0% | |
| ATCAAGTTATCGCCCAGGGG+CGG | + | chr3_3:85126580-85126599 | None:intergenic | 55.0% | |
| GAGGTGAAGAGTGGAGGAGA+TGG | - | chr3_3:85126807-85126826 | Msa0479950:intron | 55.0% | |
| TGCGTCCATAACAGCCCTCA+TGG | - | chr3_3:85126867-85126886 | Msa0479950:CDS | 55.0% | |
| GTCCATAACAGCCCTCATGG+AGG | - | chr3_3:85126870-85126889 | Msa0479950:CDS | 55.0% | |
| GTCCTCCATGAGGGCTGTTA+TGG | + | chr3_3:85126875-85126894 | None:intergenic | 55.0% | |
| CCGGAAGAAGTCCTCCATGA+GGG | + | chr3_3:85126884-85126903 | None:intergenic | 55.0% | |
| CCCTCATGGAGGACTTCTTC+CGG | - | chr3_3:85126881-85126900 | Msa0479950:intron | 55.0% | |
| TCCGGAAGAAGTCCTCCATG+AGG | + | chr3_3:85126885-85126904 | None:intergenic | 55.0% | |
| ACTCAGTCCCCTGGTTCAGA+TGG | - | chr3_3:85128009-85128028 | Msa0479950:intron | 55.0% | |
| CACCGGTATGGGCCTAGTCT+AGG | + | chr3_3:85126277-85126296 | None:intergenic | 60.0% | |
| AGACTAGGCCCATACCGGTG+TGG | - | chr3_3:85126277-85126296 | Msa0479950:intron | 60.0% | |
| !! | TCCAGTGGTAATGGTGCGCC+CGG | - | chr3_3:85126408-85126427 | Msa0479950:intron | 60.0% |
| !! | GTGTGGTTTGGTGAGGGGGA+AGG | + | chr3_3:85127561-85127580 | None:intergenic | 60.0% |
| !! | GAAGAGCGCTACCAAGACGC+TGG | - | chr3_3:85128317-85128336 | Msa0479950:intron | 60.0% |
| TCCGGGCGCACCATTACCAC+TGG | + | chr3_3:85126412-85126431 | None:intergenic | 65.0% | |
| TTATCGCCCAGGGGCGGACC+TGG | + | chr3_3:85126574-85126593 | None:intergenic | 70.0% | |
| TGTGAGGCCAGGTCCGCCCC+TGG | - | chr3_3:85126564-85126583 | Msa0479950:CDS | 75.0% | |
| GTGAGGCCAGGTCCGCCCCT+GGG | - | chr3_3:85126565-85126584 | Msa0479950:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85125383 | 85129144 | 85125383 | ID=Msa0479950;Name=Msa0479950 |
| chr3_3 | mRNA | 85125383 | 85129144 | 85125383 | ID=Msa0479950-mRNA-1;Parent=Msa0479950;Name=Msa0479950-mRNA-1;_AED=0.16;_eAED=0.16;_QI=225|0.8|0.81|1|0.6|0.54|11|336|330 |
| chr3_3 | exon | 85125383 | 85125734 | 85125383 | ID=Msa0479950-mRNA-1:exon:24361;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85125899 | 85125992 | 85125899 | ID=Msa0479950-mRNA-1:exon:24360;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85126189 | 85126280 | 85126189 | ID=Msa0479950-mRNA-1:exon:24359;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85126472 | 85126590 | 85126472 | ID=Msa0479950-mRNA-1:exon:24358;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85126825 | 85126899 | 85126825 | ID=Msa0479950-mRNA-1:exon:24357;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85126986 | 85127051 | 85126986 | ID=Msa0479950-mRNA-1:exon:24356;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85127172 | 85127228 | 85127172 | ID=Msa0479950-mRNA-1:exon:24355;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85127354 | 85127403 | 85127354 | ID=Msa0479950-mRNA-1:exon:24354;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85127576 | 85127722 | 85127576 | ID=Msa0479950-mRNA-1:exon:24353;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85128560 | 85128842 | 85128560 | ID=Msa0479950-mRNA-1:exon:24352;Parent=Msa0479950-mRNA-1 |
| chr3_3 | exon | 85128926 | 85129144 | 85128926 | ID=Msa0479950-mRNA-1:exon:24351;Parent=Msa0479950-mRNA-1 |
| chr3_3 | five_prime_UTR | 85128926 | 85129144 | 85128926 | ID=Msa0479950-mRNA-1:five_prime_utr;Parent=Msa0479950-mRNA-1 |
| chr3_3 | five_prime_UTR | 85128837 | 85128842 | 85128837 | ID=Msa0479950-mRNA-1:five_prime_utr;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85128560 | 85128836 | 85128560 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85127576 | 85127722 | 85127576 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85127354 | 85127403 | 85127354 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85127172 | 85127228 | 85127172 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85126986 | 85127051 | 85126986 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85126825 | 85126899 | 85126825 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85126472 | 85126590 | 85126472 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85126189 | 85126280 | 85126189 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85125899 | 85125992 | 85125899 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | CDS | 85125719 | 85125734 | 85125719 | ID=Msa0479950-mRNA-1:cds;Parent=Msa0479950-mRNA-1 |
| chr3_3 | three_prime_UTR | 85125383 | 85125718 | 85125383 | ID=Msa0479950-mRNA-1:three_prime_utr;Parent=Msa0479950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
