AlfalfaGEDB | Msa0428850

M. sativa cultivar zhongmu-4 / Msa0428850

KEGG: K06630
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0019222 GO:0023052 GO:0031090 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1901701
PFAM: PF00244.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428850	XP_003602823.2	100.000	260	0	0	1	260	1	260	0.0	533

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428850	sp\|P46266\|1433_PEA	96.923	260	8	0	1	260	1	260	0.0	521

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428850	G7J3X9	100.000	260	0	0	1	260	1	260	0.0	533

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012780	Msa0428850	0.807743	4.355238e-50	-8.615850e-47
Msa0014410	Msa0428850	-0.802410	5.685790e-49	-8.615850e-47
Msa0041000	Msa0428850	-0.808678	2.752974e-50	-8.615850e-47
Msa0049330	Msa0428850	-0.813922	2.002956e-51	-8.615850e-47
Msa0053960	Msa0428850	-0.807190	5.704558e-50	-8.615850e-47
Msa0064550	Msa0428850	-0.816084	6.635272e-52	-8.615850e-47
Msa0091000	Msa0428850	-0.806632	7.486688e-50	-8.615850e-47
Msa0094940	Msa0428850	0.803151	3.997832e-49	-8.615850e-47
Msa0104360	Msa0428850	-0.811992	5.305437e-51	-8.615850e-47
Msa0108070	Msa0428850	-0.823332	1.466400e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428850	MtrunA17_Chr3g0132301	100.000	260	0	0	1	260	1	260	0.0	533
Msa0428850	MtrunA17_Chr5g0426551	90.769	260	24	0	1	260	1	260	3.85e-177	488
Msa0428850	MtrunA17_Chr3g0133161	76.793	237	54	1	8	243	11	247	1.18e-135	382
Msa0428850	MtrunA17_Chr2g0325591	72.840	243	64	2	3	245	2	242	5.64e-129	365
Msa0428850	MtrunA17_Chr5g0418971	71.951	246	67	2	3	248	2	245	1.28e-126	360
Msa0428850	MtrunA17_Chr8g0379011	71.721	244	67	2	3	246	2	243	3.10e-125	355
Msa0428850	MtrunA17_Chr2g0283791	69.444	252	73	3	6	256	3	251	3.29e-124	353
Msa0428850	MtrunA17_Chr2g0316011	66.275	255	84	1	1	255	1	253	6.35e-122	348
Msa0428850	MtrunA17_Chr4g0043141	64.017	239	65	2	27	246	1	237	5.38e-107	309
Msa0428850	MtrunA17_Chr1g0164601	59.574	235	89	4	8	240	11	241	1.45e-90	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428850	AT1G78300.1	91.797	256	20	1	6	260	3	258	6.68e-173	477
Msa0428850	AT1G35160.1	87.259	259	32	1	3	260	6	264	1.67e-167	464
Msa0428850	AT4G09000.1	86.260	262	32	1	3	260	5	266	1.64e-164	456
Msa0428850	AT1G35160.2	78.746	287	32	2	3	260	6	292	2.20e-161	449
Msa0428850	AT5G38480.1	86.111	252	34	1	6	257	2	252	1.18e-160	446
Msa0428850	AT3G02520.1	84.706	255	37	2	6	258	3	257	8.97e-159	441
Msa0428850	AT3G02520.2	84.706	255	37	2	6	258	3	257	8.97e-159	441
Msa0428850	AT5G38480.3	86.111	252	33	2	6	257	2	251	2.51e-158	440
Msa0428850	AT5G38480.2	86.111	252	33	2	6	257	2	251	2.51e-158	440
Msa0428850	AT4G09000.2	88.750	240	27	0	3	242	5	244	3.83e-158	442

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Find 98 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTGATCCTCGTTGCCG+CGG	0.607870	3_2:-79856032	None:intergenic
AAACTTGATCTCGCCGAATT+TGG	0.226216	3_2:+79858041	Msa0428850:three_prime_UTR
AACCTGAGCAGATTTGTAAG+CGG	0.663795	3_2:-79856265	None:intergenic
AACCTGTTTAGCAAGATTGC+AGG	0.360144	3_2:-79856710	None:intergenic
AAGAACTCACCGTCGAAGAG+AGG	0.556409	3_2:+79855920	Msa0428850:CDS
AAGCAGCGGAAGGAATGAGA+CGG	0.594104	3_2:-79856134	None:intergenic
AATCAATACCTGCATGTCAG+AGG	0.637050	3_2:-79857623	None:intergenic
ACCAACTCATCCAATTAGGC+TGG	0.462152	3_2:+79856630	Msa0428850:CDS
AGAGCAAGACCCAGCCTAAT+TGG	0.274942	3_2:-79856640	None:intergenic
AGAGGAGAGCCGCGGCAACG+AGG	0.653525	3_2:+79856023	Msa0428850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGAAATAGAAAATGATG+AGG	-	chr3_2:79855704-79855723	None:intergenic	30.0%
TTTGTGGATCTGTAATTGAA+AGG	+	chr3_2:79856549-79856568	Msa0428850:intron	30.0%
TGTAATTGAAAGGTTTGTGA+TGG	+	chr3_2:79856559-79856578	Msa0428850:intron	30.0%
CTTATTTCCATTACTTCTAC+AGG	-	chr3_2:79856887-79856906	None:intergenic	30.0%
ACTCTGATCAAATAGTGTAA+GGG	-	chr3_2:79856989-79857008	None:intergenic	30.0%
AACTCTGATCAAATAGTGTA+AGG	-	chr3_2:79856990-79857009	None:intergenic	30.0%
AAATAATAGATTCCACCGTT+GGG	-	chr3_2:79857039-79857058	None:intergenic	30.0%
AAAATAATAGATTCCACCGT+TGG	-	chr3_2:79857040-79857059	None:intergenic	30.0%
AATAAGGATACCAAAAAAGG+AGG	-	chr3_2:79857172-79857191	None:intergenic	30.0%
GAGTAGTACCTAATGTTATT+TGG	-	chr3_2:79857347-79857366	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	79855696	79858277	79855696	ID=Msa0428850;Name=Msa0428850
chr3_2	mRNA	79855696	79858277	79855696	ID=Msa0428850-mRNA-1;Parent=Msa0428850;Name=Msa0428850-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103\|1\|1\|1\|1\|1\|4\|489\|260
chr3_2	exon	79855696	79856284	79855696	ID=Msa0428850-mRNA-1:exon:21594;Parent=Msa0428850-mRNA-1
chr3_2	exon	79856607	79856729	79856607	ID=Msa0428850-mRNA-1:exon:21595;Parent=Msa0428850-mRNA-1
chr3_2	exon	79857520	79857636	79857520	ID=Msa0428850-mRNA-1:exon:21596;Parent=Msa0428850-mRNA-1
chr3_2	exon	79857732	79858277	79857732	ID=Msa0428850-mRNA-1:exon:21597;Parent=Msa0428850-mRNA-1
chr3_2	five_prime_UTR	79855696	79855798	79855696	ID=Msa0428850-mRNA-1:five_prime_utr;Parent=Msa0428850-mRNA-1
chr3_2	CDS	79855799	79856284	79855799	ID=Msa0428850-mRNA-1:cds;Parent=Msa0428850-mRNA-1
chr3_2	CDS	79856607	79856729	79856607	ID=Msa0428850-mRNA-1:cds;Parent=Msa0428850-mRNA-1
chr3_2	CDS	79857520	79857636	79857520	ID=Msa0428850-mRNA-1:cds;Parent=Msa0428850-mRNA-1
chr3_2	CDS	79857732	79857788	79857732	ID=Msa0428850-mRNA-1:cds;Parent=Msa0428850-mRNA-1
chr3_2	three_prime_UTR	79857789	79858277	79857789	ID=Msa0428850-mRNA-1:three_prime_utr;Parent=Msa0428850-mRNA-1

Gene Sequence

>Msa0428850

ATGGCGGCCGCTCATTCACCTCGGGAAGAGAACGTTTACATGGCAAAGCTCGCCGAACAAGCCGAACGCTACGAAGAAATGGTGGAGTTCATGGAAAAAGTCTCCGCCAACGCCGATAACGAAGAACTCACCGTCGAAGAGAGGAACCTTCTCTCTGTAGCCTACAAGAACGTCATCGGAGCACGACGTGCTTCGTGGCGTATCATTTCCTCGATCGAACAGAAAGAGGAGAGCCGCGGCAACGAGGATCACGTTTCCGTCATCCGTGACTACCGATCTAAGATCGAATCGGAGCTTTCTAACATCTGTGACGGTATTCTCAAGCTTCTTGATTCCCGTCTCATTCCTTCCGCTGCTTCCGGTGATTCCAAGGTTTTCTACCTTAAGATGAAGGGAGATTACCATAGGTATCTTGCTGAGTTCAAGACTGGCGCCGAGCGTAAGGAGGCTGCTGAGAGCACTCTCGCCGCTTACAAATCTGCTCAGGACATTGCAAACGCTGAATTGCCACCAACTCATCCAATTAGGCTGGGTCTTGCTCTGAATTTCTCTGTGTTTTACTATGAGATTCTTAACTCTCCTGATCGTGCCTGCAATCTTGCTAAACAGGCTTTTGATGAAGCAATTGCTGAACTGGATACCCTTGGCGAGGAATCATACAAGGATAGCACTTTGATCATGCAACTTCTTCGTGATAATCTCACCCTATGGACCTCTGACATGCAGGATGATGGTGCCGATGAAATTAAAGAAGCAGCTCCTAAACCCGATGAACAGCAGTAA

Protein sequence

>Msa0428850

MAAAHSPREENVYMAKLAEQAERYEEMVEFMEKVSANADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLAAYKSAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAAPKPDEQQ*