Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428850 | XP_003602823.2 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428850 | sp|P46266|1433_PEA | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428850 | G7J3X9 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012780 | Msa0428850 | 0.807743 | 4.355238e-50 | -8.615850e-47 |
| Msa0014410 | Msa0428850 | -0.802410 | 5.685790e-49 | -8.615850e-47 |
| Msa0041000 | Msa0428850 | -0.808678 | 2.752974e-50 | -8.615850e-47 |
| Msa0049330 | Msa0428850 | -0.813922 | 2.002956e-51 | -8.615850e-47 |
| Msa0053960 | Msa0428850 | -0.807190 | 5.704558e-50 | -8.615850e-47 |
| Msa0064550 | Msa0428850 | -0.816084 | 6.635272e-52 | -8.615850e-47 |
| Msa0091000 | Msa0428850 | -0.806632 | 7.486688e-50 | -8.615850e-47 |
| Msa0094940 | Msa0428850 | 0.803151 | 3.997832e-49 | -8.615850e-47 |
| Msa0104360 | Msa0428850 | -0.811992 | 5.305437e-51 | -8.615850e-47 |
| Msa0108070 | Msa0428850 | -0.823332 | 1.466400e-53 | -8.615850e-47 |
| Msa0109490 | Msa0428850 | -0.811249 | 7.693236e-51 | -8.615850e-47 |
| Msa0116510 | Msa0428850 | -0.806584 | 7.663875e-50 | -8.615850e-47 |
| Msa0135590 | Msa0428850 | -0.820752 | 5.810295e-53 | -8.615850e-47 |
| Msa0143280 | Msa0428850 | -0.800625 | 1.319839e-48 | -8.615850e-47 |
| Msa0153440 | Msa0428850 | -0.822717 | 2.039974e-53 | -8.615850e-47 |
| Msa0154240 | Msa0428850 | -0.810762 | 9.809568e-51 | -8.615850e-47 |
| Msa0154270 | Msa0428850 | -0.806756 | 7.046467e-50 | -8.615850e-47 |
| Msa0185640 | Msa0428850 | 0.808051 | 3.744420e-50 | -8.615850e-47 |
| Msa0198440 | Msa0428850 | -0.834752 | 2.499613e-56 | -8.615850e-47 |
| Msa0226620 | Msa0428850 | 0.806759 | 7.037606e-50 | -8.615850e-47 |
| Msa0377280 | Msa0428850 | -0.818843 | 1.585934e-52 | -8.615850e-47 |
| Msa0379340 | Msa0428850 | 0.994278 | 5.761338e-206 | -8.615850e-47 |
| Msa0384530 | Msa0428850 | -0.817433 | 3.306319e-52 | -8.615850e-47 |
| Msa0389060 | Msa0428850 | -0.830442 | 2.930732e-55 | -8.615850e-47 |
| Msa0404690 | Msa0428850 | -0.825619 | 4.245924e-54 | -8.615850e-47 |
| Msa0405250 | Msa0428850 | 0.826218 | 3.061202e-54 | -8.615850e-47 |
| Msa0428850 | Msa0437330 | -0.848736 | 5.069361e-60 | -8.615850e-47 |
| Msa0428850 | Msa0479030 | -0.831592 | 1.529915e-55 | -8.615850e-47 |
| Msa0428850 | Msa0479950 | -0.803302 | 3.719988e-49 | -8.615850e-47 |
| Msa0428850 | Msa0569360 | -0.802990 | 4.316292e-49 | -8.615850e-47 |
| Msa0428850 | Msa0570680 | -0.829300 | 5.560912e-55 | -8.615850e-47 |
| Msa0428850 | Msa0589610 | -0.824077 | 9.810355e-54 | -8.615850e-47 |
| Msa0428850 | Msa0600820 | -0.805328 | 1.407440e-49 | -8.615850e-47 |
| Msa0428850 | Msa0610780 | -0.807044 | 6.126660e-50 | -8.615850e-47 |
| Msa0428850 | Msa0610810 | -0.836470 | 9.182021e-57 | -8.615850e-47 |
| Msa0428850 | Msa0627050 | -0.805611 | 1.227670e-49 | -8.615850e-47 |
| Msa0428850 | Msa0651310 | -0.807501 | 4.901587e-50 | -8.615850e-47 |
| Msa0428850 | Msa0657860 | -0.801705 | 7.938127e-49 | -8.615850e-47 |
| Msa0428850 | Msa0675010 | -0.822595 | 2.178117e-53 | -8.615850e-47 |
| Msa0428850 | Msa0688110 | -0.800069 | 1.713186e-48 | -8.615850e-47 |
| Msa0428850 | Msa0709660 | -0.813550 | 2.418477e-51 | -8.615850e-47 |
| Msa0428850 | Msa0727300 | -0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0428850 | Msa0732080 | 0.831534 | 1.580793e-55 | -8.615850e-47 |
| Msa0428850 | Msa0744490 | -0.807638 | 4.584318e-50 | -8.615850e-47 |
| Msa0428850 | Msa0744500 | -0.831157 | 1.957196e-55 | -8.615850e-47 |
| Msa0428850 | Msa0749150 | -0.842137 | 3.107358e-58 | -8.615850e-47 |
| Msa0428850 | Msa0775580 | -0.825679 | 4.108997e-54 | -8.615850e-47 |
| Msa0428850 | Msa0788360 | -0.840519 | 8.281794e-58 | -8.615850e-47 |
| Msa0428850 | Msa0792880 | -0.853094 | 2.997891e-61 | -8.615850e-47 |
| Msa0428850 | Msa0803530 | -0.807929 | 3.974914e-50 | -8.615850e-47 |
| Msa0428850 | Msa0810350 | 0.855817 | 4.889294e-62 | -8.615850e-47 |
| Msa0428850 | Msa0812970 | -0.814351 | 1.610716e-51 | -8.615850e-47 |
| Msa0428850 | Msa0813030 | -0.821117 | 4.788501e-53 | -8.615850e-47 |
| Msa0428850 | Msa0826650 | -0.840197 | 1.005171e-57 | -8.615850e-47 |
| Msa0428850 | Msa0828570 | -0.831539 | 1.576517e-55 | -8.615850e-47 |
| Msa0428850 | Msa0828900 | -0.852000 | 6.150350e-61 | -8.615850e-47 |
| Msa0428850 | Msa0853500 | -0.825568 | 4.367003e-54 | -8.615850e-47 |
| Msa0428850 | Msa0864690 | -0.839746 | 1.317739e-57 | -8.615850e-47 |
| Msa0428850 | Msa0883350 | -0.821335 | 4.263939e-53 | -8.615850e-47 |
| Msa0428850 | Msa0884620 | -0.817439 | 3.296498e-52 | -8.615850e-47 |
| Msa0428850 | Msa0906360 | -0.805241 | 1.467825e-49 | -8.615850e-47 |
| Msa0428850 | Msa0911910 | -0.805060 | 1.602093e-49 | -8.615850e-47 |
| Msa0428850 | Msa0938420 | -0.834278 | 3.287291e-56 | -8.615850e-47 |
| Msa0428850 | Msa0984000 | -0.809636 | 1.715424e-50 | -8.615850e-47 |
| Msa0428850 | Msa1041160 | 0.804545 | 2.052118e-49 | -8.615850e-47 |
| Msa0428850 | Msa1054410 | -0.807136 | 5.858377e-50 | -8.615850e-47 |
| Msa0428850 | Msa1108540 | 0.803769 | 2.976135e-49 | -8.615850e-47 |
| Msa0428850 | Msa1125450 | -0.816065 | 6.700290e-52 | -8.615850e-47 |
| Msa0428850 | Msa1127910 | 0.820860 | 5.487108e-53 | -8.615850e-47 |
| Msa0428850 | Msa1130350 | -0.857481 | 1.585591e-62 | -8.615850e-47 |
| Msa0428850 | Msa1130630 | -0.853921 | 1.735397e-61 | -8.615850e-47 |
| Msa0428850 | Msa1133530 | -0.800642 | 1.309730e-48 | -8.615850e-47 |
| Msa0428850 | Msa1138450 | -0.812888 | 3.378906e-51 | -8.615850e-47 |
| Msa0428850 | Msa1141250 | 0.825243 | 5.213508e-54 | -8.615850e-47 |
| Msa0428850 | Msa1164570 | -0.801050 | 1.081088e-48 | -8.615850e-47 |
| Msa0428850 | Msa1173380 | -0.805868 | 1.084242e-49 | -8.615850e-47 |
| Msa0428850 | Msa1178120 | -0.822147 | 2.767872e-53 | -8.615850e-47 |
| Msa0428850 | Msa1182800 | -0.822529 | 2.256020e-53 | -8.615850e-47 |
| Msa0428850 | Msa1182830 | -0.835247 | 1.874898e-56 | -8.615850e-47 |
| Msa0428850 | Msa1203360 | -0.819691 | 1.016775e-52 | -8.615850e-47 |
| Msa0428850 | Msa1204980 | 0.800292 | 1.543544e-48 | -8.615850e-47 |
| Msa0428850 | Msa1206760 | -0.818302 | 2.104024e-52 | -8.615850e-47 |
| Msa0428850 | Msa1237260 | -0.833997 | 3.865454e-56 | -8.615850e-47 |
| Msa0428850 | Msa1252300 | -0.839951 | 1.165460e-57 | -8.615850e-47 |
| Msa0428850 | Msa1256540 | 0.804162 | 2.465866e-49 | -8.615850e-47 |
| Msa0428850 | Msa1272950 | -0.823649 | 1.236135e-53 | -8.615850e-47 |
| Msa0428850 | Msa1296960 | 0.808556 | 2.922220e-50 | -8.615850e-47 |
| Msa0428850 | Msa1317710 | -0.812390 | 4.342258e-51 | -8.615850e-47 |
| Msa0428850 | Msa1335970 | 0.802353 | 5.839737e-49 | -8.615850e-47 |
| Msa0428850 | Msa1340530 | -0.821519 | 3.868211e-53 | -8.615850e-47 |
| Msa0428850 | Msa1386250 | -0.821171 | 4.652798e-53 | -8.615850e-47 |
| Msa0428850 | Msa1424510 | -0.823834 | 1.119057e-53 | -8.615850e-47 |
| Msa0428850 | Msa1427810 | -0.848998 | 4.287142e-60 | -8.615850e-47 |
| Msa0428850 | Msa1441200 | -0.864602 | 1.080420e-64 | -8.615850e-47 |
| Msa0428850 | Msa1457180 | -0.800374 | 1.485061e-48 | -8.615850e-47 |
| Msa0428850 | Msa1460310 | 0.851520 | 8.412692e-61 | -8.615850e-47 |
| Msa0428850 | Msa1463560 | 0.986301 | 2.475616e-166 | -8.615850e-47 |
| Msa0245870 | Msa0428850 | -0.832171 | 1.100606e-55 | -8.615850e-47 |
| Msa0264940 | Msa0428850 | 0.848582 | 5.592283e-60 | -8.615850e-47 |
| Msa0265980 | Msa0428850 | 0.832919 | 7.180444e-56 | -8.615850e-47 |
| Msa0278670 | Msa0428850 | -0.835924 | 1.263805e-56 | -8.615850e-47 |
| Msa0302990 | Msa0428850 | 0.851310 | 9.647410e-61 | -8.615850e-47 |
| Msa0308570 | Msa0428850 | -0.827705 | 1.349907e-54 | -8.615850e-47 |
| Msa0318070 | Msa0428850 | -0.828959 | 6.724880e-55 | -8.615850e-47 |
| Msa0342340 | Msa0428850 | 0.807391 | 5.171328e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428850 | MtrunA17_Chr3g0132301 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Msa0428850 | MtrunA17_Chr5g0426551 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 3.85e-177 | 488 |
| Msa0428850 | MtrunA17_Chr3g0133161 | 76.793 | 237 | 54 | 1 | 8 | 243 | 11 | 247 | 1.18e-135 | 382 |
| Msa0428850 | MtrunA17_Chr2g0325591 | 72.840 | 243 | 64 | 2 | 3 | 245 | 2 | 242 | 5.64e-129 | 365 |
| Msa0428850 | MtrunA17_Chr5g0418971 | 71.951 | 246 | 67 | 2 | 3 | 248 | 2 | 245 | 1.28e-126 | 360 |
| Msa0428850 | MtrunA17_Chr8g0379011 | 71.721 | 244 | 67 | 2 | 3 | 246 | 2 | 243 | 3.10e-125 | 355 |
| Msa0428850 | MtrunA17_Chr2g0283791 | 69.444 | 252 | 73 | 3 | 6 | 256 | 3 | 251 | 3.29e-124 | 353 |
| Msa0428850 | MtrunA17_Chr2g0316011 | 66.275 | 255 | 84 | 1 | 1 | 255 | 1 | 253 | 6.35e-122 | 348 |
| Msa0428850 | MtrunA17_Chr4g0043141 | 64.017 | 239 | 65 | 2 | 27 | 246 | 1 | 237 | 5.38e-107 | 309 |
| Msa0428850 | MtrunA17_Chr1g0164601 | 59.574 | 235 | 89 | 4 | 8 | 240 | 11 | 241 | 1.45e-90 | 268 |
| Msa0428850 | MtrunA17_Chr3g0082111 | 59.149 | 235 | 90 | 4 | 8 | 240 | 41 | 271 | 2.59e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428850 | AT1G78300.1 | 91.797 | 256 | 20 | 1 | 6 | 260 | 3 | 258 | 6.68e-173 | 477 |
| Msa0428850 | AT1G35160.1 | 87.259 | 259 | 32 | 1 | 3 | 260 | 6 | 264 | 1.67e-167 | 464 |
| Msa0428850 | AT4G09000.1 | 86.260 | 262 | 32 | 1 | 3 | 260 | 5 | 266 | 1.64e-164 | 456 |
| Msa0428850 | AT1G35160.2 | 78.746 | 287 | 32 | 2 | 3 | 260 | 6 | 292 | 2.20e-161 | 449 |
| Msa0428850 | AT5G38480.1 | 86.111 | 252 | 34 | 1 | 6 | 257 | 2 | 252 | 1.18e-160 | 446 |
| Msa0428850 | AT3G02520.1 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.97e-159 | 441 |
| Msa0428850 | AT3G02520.2 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.97e-159 | 441 |
| Msa0428850 | AT5G38480.3 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.51e-158 | 440 |
| Msa0428850 | AT5G38480.2 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.51e-158 | 440 |
| Msa0428850 | AT4G09000.2 | 88.750 | 240 | 27 | 0 | 3 | 242 | 5 | 244 | 3.83e-158 | 442 |
| Msa0428850 | AT5G16050.1 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.60e-150 | 419 |
| Msa0428850 | AT5G16050.2 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.60e-150 | 419 |
| Msa0428850 | AT5G10450.2 | 78.776 | 245 | 51 | 1 | 3 | 246 | 2 | 246 | 4.52e-143 | 401 |
| Msa0428850 | AT5G10450.4 | 76.800 | 250 | 57 | 1 | 3 | 251 | 2 | 251 | 1.25e-142 | 401 |
| Msa0428850 | AT5G10450.1 | 78.926 | 242 | 50 | 1 | 3 | 243 | 2 | 243 | 1.57e-142 | 400 |
| Msa0428850 | AT5G10450.3 | 79.253 | 241 | 49 | 1 | 3 | 242 | 2 | 242 | 6.55e-142 | 399 |
| Msa0428850 | AT5G65430.2 | 79.167 | 240 | 49 | 1 | 8 | 246 | 7 | 246 | 6.91e-141 | 395 |
| Msa0428850 | AT5G65430.1 | 79.325 | 237 | 48 | 1 | 8 | 243 | 7 | 243 | 1.74e-140 | 395 |
| Msa0428850 | AT5G65430.3 | 79.661 | 236 | 47 | 1 | 8 | 242 | 7 | 242 | 6.21e-140 | 394 |
| Msa0428850 | AT1G26480.1 | 72.222 | 252 | 67 | 2 | 8 | 258 | 10 | 259 | 1.20e-129 | 368 |
| Msa0428850 | AT1G34760.1 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 3.52e-122 | 348 |
| Msa0428850 | AT1G34760.2 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 5.02e-122 | 348 |
| Msa0428850 | AT2G42590.1 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.32e-121 | 347 |
| Msa0428850 | AT2G42590.3 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.35e-121 | 348 |
| Msa0428850 | AT2G42590.2 | 69.200 | 250 | 74 | 2 | 8 | 256 | 7 | 254 | 4.14e-121 | 346 |
| Msa0428850 | AT1G22300.1 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 5.60e-116 | 333 |
| Msa0428850 | AT1G22300.2 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 6.81e-116 | 333 |
| Msa0428850 | AT1G22300.3 | 69.038 | 239 | 72 | 2 | 8 | 246 | 5 | 241 | 1.13e-114 | 329 |
| Msa0428850 | AT1G78220.1 | 48.069 | 233 | 118 | 2 | 8 | 239 | 5 | 235 | 1.23e-70 | 217 |
| Msa0428850 | AT1G22290.2 | 45.238 | 210 | 93 | 5 | 11 | 217 | 8 | 198 | 9.87e-48 | 158 |
| Msa0428850 | AT1G22290.1 | 44.928 | 207 | 92 | 5 | 11 | 214 | 8 | 195 | 1.98e-47 | 156 |
| Msa0428850 | AT2G10450.1 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 4.48e-18 | 77.0 |
Find 98 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTGTTGCCAATCTCTT+TGG | 0.214735 | 3_2:+79857852 | Msa0428850:three_prime_UTR |
| AAACTTGATCTCGCCGAATT+TGG | 0.226216 | 3_2:+79858041 | Msa0428850:three_prime_UTR |
| AGAGCAAGACCCAGCCTAAT+TGG | 0.274942 | 3_2:-79856640 | None:intergenic |
| TTCATGTCTGTTATGAGTTC+TGG | 0.280155 | 3_2:+79857893 | Msa0428850:three_prime_UTR |
| GACGGTGAGTTCTTCGTTAT+CGG | 0.280595 | 3_2:-79855911 | None:intergenic |
| TGCTTGTTGCCAATCTCTTT+GGG | 0.288401 | 3_2:+79857853 | Msa0428850:three_prime_UTR |
| AGGAGAAGTTTGATCCTAAT+TGG | 0.291226 | 3_2:-79857802 | None:intergenic |
| CTCATTCCTTCCGCTGCTTC+CGG | 0.316176 | 3_2:+79856138 | Msa0428850:CDS |
| TGATGAAGCAATTGCTGAAC+TGG | 0.341177 | 3_2:+79857525 | Msa0428850:CDS |
| TTCAGTGTCCTCAAGAAAAT+AGG | 0.346803 | 3_2:-79857972 | None:intergenic |
| TACTGCTGTTCATCGGGTTT+AGG | 0.348488 | 3_2:-79857765 | None:intergenic |
| CGAAGAAATGGTGGAGTTCA+TGG | 0.350821 | 3_2:+79855870 | Msa0428850:CDS |
| AACCTGTTTAGCAAGATTGC+AGG | 0.360144 | 3_2:-79856710 | None:intergenic |
| CTTCATTCATTAACATATAG+AGG | 0.370439 | 3_2:-79857822 | None:intergenic |
| GTTATGAGTTCTGGATGTCC+TGG | 0.372021 | 3_2:+79857902 | Msa0428850:three_prime_UTR |
| CACCATTTCTTCGTAGCGTT+CGG | 0.376229 | 3_2:-79855860 | None:intergenic |
| TGCTCCGATGACGTTCTTGT+AGG | 0.378815 | 3_2:-79855959 | None:intergenic |
| TAATATCCCCTCACCAAATT+CGG | 0.379779 | 3_2:-79858054 | None:intergenic |
| TTCGTAGCGTTCGGCTTGTT+CGG | 0.387733 | 3_2:-79855851 | None:intergenic |
| TGCCTGCAATCTTGCTAAAC+AGG | 0.391731 | 3_2:+79856708 | Msa0428850:CDS |
| GGTAATCTCCCTTCATCTTA+AGG | 0.395416 | 3_2:-79856179 | None:intergenic |
| CGCTGCTTCCGGTGATTCCA+AGG | 0.396427 | 3_2:+79856149 | Msa0428850:CDS |
| TTTGTTTGGTTTCAGGATGA+TGG | 0.406229 | 3_2:+79857717 | Msa0428850:intron |
| AGCCGAACGCTACGAAGAAA+TGG | 0.413922 | 3_2:+79855858 | Msa0428850:CDS |
| TTTGTTTACTGCTGTTCATC+GGG | 0.421726 | 3_2:-79857771 | None:intergenic |
| TGCCACCAACTCATCCAATT+AGG | 0.435904 | 3_2:+79856626 | Msa0428850:CDS |
| GCAAGATTGCAGGCACGATC+AGG | 0.442951 | 3_2:-79856700 | None:intergenic |
| ATTATCACTTGTTATATTTG+AGG | 0.443079 | 3_2:+79858120 | Msa0428850:three_prime_UTR |
| TTATCACTTGTTATATTTGA+GGG | 0.443479 | 3_2:+79858121 | Msa0428850:three_prime_UTR |
| AGCTGCTTCTTTAATTTCAT+CGG | 0.448476 | 3_2:-79857742 | None:intergenic |
| ATCTCAGCACCCAAAGAGAT+TGG | 0.450182 | 3_2:-79857862 | None:intergenic |
| TTCTTCGTTATCGGCGTTGG+CGG | 0.458530 | 3_2:-79855902 | None:intergenic |
| ACCAACTCATCCAATTAGGC+TGG | 0.462152 | 3_2:+79856630 | Msa0428850:CDS |
| CTCAGCAGCCTCCTTACGCT+CGG | 0.471405 | 3_2:-79856232 | None:intergenic |
| CTCTATATGTTAATGAATGA+AGG | 0.471694 | 3_2:+79857823 | Msa0428850:three_prime_UTR |
| CCTGCATGTCAGAGGTCCAT+AGG | 0.480592 | 3_2:-79857615 | None:intergenic |
| ATTTGTTTACTGCTGTTCAT+CGG | 0.482074 | 3_2:-79857772 | None:intergenic |
| TAGAGAGAGAAAGTGAGATC+TGG | 0.484019 | 3_2:-79855766 | None:intergenic |
| ATGGGTCATGAACTCGTGGT+AGG | 0.488348 | 3_2:+79858088 | Msa0428850:three_prime_UTR |
| TCGGAGCACGACGTGCTTCG+TGG | 0.495843 | 3_2:+79855974 | Msa0428850:CDS |
| CCCAGCCTAATTGGATGAGT+TGG | 0.496782 | 3_2:-79856631 | None:intergenic |
| CGCCGCTTACAAATCTGCTC+AGG | 0.501140 | 3_2:+79856263 | Msa0428850:CDS |
| CATCTTAAGGTAGAAAACCT+TGG | 0.502188 | 3_2:-79856166 | None:intergenic |
| GGCGGCCGCTCATTCACCTC+GGG | 0.502842 | 3_2:+79855801 | Msa0428850:CDS |
| CAAGACTGGCGCCGAGCGTA+AGG | 0.509038 | 3_2:+79856221 | Msa0428850:CDS |
| TTCCTCGATCGAACAGAAAG+AGG | 0.515919 | 3_2:+79856005 | Msa0428850:CDS |
| GAGTTCTTCGTTATCGGCGT+TGG | 0.515957 | 3_2:-79855905 | None:intergenic |
| AGCCTAATTGGATGAGTTGG+TGG | 0.523887 | 3_2:-79856628 | None:intergenic |
| TTCGTGATAATCTCACCCTA+TGG | 0.525895 | 3_2:+79857599 | Msa0428850:CDS |
| TTATGAGTTCTGGATGTCCT+GGG | 0.527707 | 3_2:+79857903 | Msa0428850:three_prime_UTR |
| GTAGAAAACCTTGGAATCAC+CGG | 0.533118 | 3_2:-79856157 | None:intergenic |
| CCTATGGACCTCTGACATGC+AGG | 0.534557 | 3_2:+79857615 | Msa0428850:CDS |
| AGATCGGTAGTCACGGATGA+CGG | 0.545474 | 3_2:-79856055 | None:intergenic |
| TGTTAATGAATGAAGGAAGA+AGG | 0.545599 | 3_2:+79857830 | Msa0428850:three_prime_UTR |
| CTGCATGTCAGAGGTCCATA+GGG | 0.549120 | 3_2:-79857614 | None:intergenic |
| AGCAGCGGAAGGAATGAGAC+GGG | 0.550202 | 3_2:-79856133 | None:intergenic |
| TGAACTCAGCAAGATACCTA+TGG | 0.552878 | 3_2:-79856200 | None:intergenic |
| TGGGTCATGAACTCGTGGTA+GGG | 0.555219 | 3_2:+79858089 | Msa0428850:three_prime_UTR |
| CTCCTCTTTCTGTTCGATCG+AGG | 0.555820 | 3_2:-79856007 | None:intergenic |
| AAGAACTCACCGTCGAAGAG+AGG | 0.556409 | 3_2:+79855920 | Msa0428850:CDS |
| TATCTTGCTGAGTTCAAGAC+TGG | 0.559984 | 3_2:+79856207 | Msa0428850:CDS |
| CTACCGATCTAAGATCGAAT+CGG | 0.562157 | 3_2:+79856068 | Msa0428850:CDS |
| ATAGAAAATGATGAGGAAGA+CGG | 0.571147 | 3_2:-79855694 | None:intergenic |
| CCTTGGCGAGGAATCATACA+AGG | 0.572604 | 3_2:+79857552 | Msa0428850:CDS |
| TCGGGAAGAGAACGTTTACA+TGG | 0.578574 | 3_2:+79855819 | Msa0428850:CDS |
| GTAGCCTACAAGAACGTCAT+CGG | 0.580177 | 3_2:+79855955 | Msa0428850:CDS |
| GATCTCGCCGAATTTGGTGA+GGG | 0.581578 | 3_2:+79858047 | Msa0428850:three_prime_UTR |
| ATTGCTGAACTGGATACCCT+TGG | 0.584167 | 3_2:+79857535 | Msa0428850:CDS |
| CTTGTATGATTCCTCGCCAA+GGG | 0.586259 | 3_2:-79857551 | None:intergenic |
| CCAACTCATCCAATTAGGCT+GGG | 0.587390 | 3_2:+79856631 | Msa0428850:CDS |
| TGGCGGCCGCTCATTCACCT+CGG | 0.588265 | 3_2:+79855800 | Msa0428850:CDS |
| CTTGGAATCACCGGAAGCAG+CGG | 0.589029 | 3_2:-79856148 | None:intergenic |
| CTCTCTCTAGAATTCAACAA+TGG | 0.589732 | 3_2:+79855780 | Msa0428850:exon |
| GAGAGAAATAGAAAATGATG+AGG | 0.593628 | 3_2:-79855701 | None:intergenic |
| AAGCAGCGGAAGGAATGAGA+CGG | 0.594104 | 3_2:-79856134 | None:intergenic |
| GACTGGCGCCGAGCGTAAGG+AGG | 0.597871 | 3_2:+79856224 | Msa0428850:CDS |
| TGATCTCGCCGAATTTGGTG+AGG | 0.603120 | 3_2:+79858046 | Msa0428850:three_prime_UTR |
| CCTTGTATGATTCCTCGCCA+AGG | 0.605796 | 3_2:-79857552 | None:intergenic |
| AAACGTGATCCTCGTTGCCG+CGG | 0.607870 | 3_2:-79856032 | None:intergenic |
| AGATGAAGGGAGATTACCAT+AGG | 0.607967 | 3_2:+79856184 | Msa0428850:CDS |
| GAGAAGGTTCCTCTCTTCGA+CGG | 0.608781 | 3_2:-79855929 | None:intergenic |
| GTTATATTTGAGGGAACTCG+TGG | 0.620508 | 3_2:+79858130 | Msa0428850:three_prime_UTR |
| TCTTGTAGGCTACAGAGAGA+AGG | 0.628236 | 3_2:-79855945 | None:intergenic |
| GAATCACCGGAAGCAGCGGA+AGG | 0.629660 | 3_2:-79856144 | None:intergenic |
| AGGACAAACTAAAACAGCCC+AGG | 0.629679 | 3_2:-79857920 | None:intergenic |
| AATCAATACCTGCATGTCAG+AGG | 0.637050 | 3_2:-79857623 | None:intergenic |
| ATGTAAACGTTCTCTTCCCG+AGG | 0.637688 | 3_2:-79855817 | None:intergenic |
| GCTCCGATTCGATCTTAGAT+CGG | 0.641337 | 3_2:-79856071 | None:intergenic |
| ATCTCGCCGAATTTGGTGAG+GGG | 0.643265 | 3_2:+79858048 | Msa0428850:three_prime_UTR |
| CGATCTTAGATCGGTAGTCA+CGG | 0.645752 | 3_2:-79856062 | None:intergenic |
| CTCTTCCCGAGGTGAATGAG+CGG | 0.645933 | 3_2:-79855806 | None:intergenic |
| AGAGGAGAGCCGCGGCAACG+AGG | 0.653525 | 3_2:+79856023 | Msa0428850:CDS |
| GAGCTTTCTAACATCTGTGA+CGG | 0.658608 | 3_2:+79856090 | Msa0428850:CDS |
| TCTCTAGAATTCAACAATGG+CGG | 0.659956 | 3_2:+79855783 | Msa0428850:exon |
| GAACAGAAAGAGGAGAGCCG+CGG | 0.660532 | 3_2:+79856015 | Msa0428850:CDS |
| AACCTGAGCAGATTTGTAAG+CGG | 0.663795 | 3_2:-79856265 | None:intergenic |
| TGAACTGGATACCCTTGGCG+AGG | 0.679766 | 3_2:+79857540 | Msa0428850:CDS |
| CGAACGCTACGAAGAAATGG+TGG | 0.680192 | 3_2:+79855861 | Msa0428850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTAGTTTTTTTTTTAT+GGG | + | chr3_2:79858070-79858089 | Msa0428850:three_prime_UTR | 10.0% |
| !! | TACTTTGTATATGAAATATA+TGG | + | chr3_2:79856522-79856541 | Msa0428850:intron | 15.0% |
| !!! | GTTATTTTGTAGTTATTTTA+AGG | + | chr3_2:79856771-79856790 | Msa0428850:intron | 15.0% |
| !! | CATTTCAAAATGAAATTTAA+AGG | - | chr3_2:79857393-79857412 | None:intergenic | 15.0% |
| !! | AGAAGAAAACAAAAATATAT+GGG | - | chr3_2:79857672-79857691 | None:intergenic | 15.0% |
| !! | ATTTGTAAAACACTTAAAAA+TGG | - | chr3_2:79857947-79857966 | None:intergenic | 15.0% |
| !!! | GGATATTAGTTTTTTTTTTA+TGG | + | chr3_2:79858069-79858088 | Msa0428850:three_prime_UTR | 15.0% |
| !!! | TAGTTTCTTTTTTTAATTGT+TGG | + | chr3_2:79858186-79858205 | Msa0428850:three_prime_UTR | 15.0% |
| !! | AAACAACAAAAAGGAAAAAA+CGG | - | chr3_2:79856293-79856312 | None:intergenic | 20.0% |
| !! | AATAAGATGTATATCCAAAA+AGG | - | chr3_2:79856797-79856816 | None:intergenic | 20.0% |
| !! | AATAATAAGGATACCAAAAA+AGG | - | chr3_2:79857175-79857194 | None:intergenic | 20.0% |
| !! | TTTAAAGGAATAAATTCCAT+GGG | - | chr3_2:79857378-79857397 | None:intergenic | 20.0% |
| !! | ATTTAAAGGAATAAATTCCA+TGG | - | chr3_2:79857379-79857398 | None:intergenic | 20.0% |
| !!! | CTCATGAATATTTTTTTGTT+TGG | + | chr3_2:79857487-79857506 | Msa0428850:intron | 20.0% |
| !! | GAGAAGAAAACAAAAATATA+TGG | - | chr3_2:79857673-79857692 | None:intergenic | 20.0% |
| !!! | TTTAATCAATGTATTGATCT+TGG | + | chr3_2:79857694-79857713 | Msa0428850:intron | 20.0% |
| !!! | GAAGTTTTATTATATGGAAT+TGG | + | chr3_2:79857992-79858011 | Msa0428850:three_prime_UTR | 20.0% |
| !!! | ATTATCACTTGTTATATTTG+AGG | + | chr3_2:79858120-79858139 | Msa0428850:three_prime_UTR | 20.0% |
| !!! | TTATCACTTGTTATATTTGA+GGG | + | chr3_2:79858121-79858140 | Msa0428850:three_prime_UTR | 20.0% |
| ! | CAAAATCGAAAACAACAAAA+AGG | - | chr3_2:79856302-79856321 | None:intergenic | 25.0% |
| !! | TTTTGTGATTCAAATCTGTT+AGG | + | chr3_2:79856317-79856336 | Msa0428850:intron | 25.0% |
| !! | GCAATATTTTTCACAATCTT+TGG | + | chr3_2:79856484-79856503 | Msa0428850:intron | 25.0% |
| !! | TGAAATATATGGAGTATTTG+TGG | + | chr3_2:79856533-79856552 | Msa0428850:intron | 25.0% |
| !!! | TAGTTATTTTAAGGCCTTTT+TGG | + | chr3_2:79856780-79856799 | Msa0428850:intron | 25.0% |
| !! | CTGAAAACATTTTATGAACA+TGG | + | chr3_2:79856907-79856926 | Msa0428850:intron | 25.0% |
| ! | TTGGATATTTGTGAAGAAAT+TGG | + | chr3_2:79857010-79857029 | Msa0428850:intron | 25.0% |
| !! | AATACTTGACAACTCATTTT+AGG | - | chr3_2:79857214-79857233 | None:intergenic | 25.0% |
| !! | AGTTGTCAAGTATTGTTTAT+TGG | + | chr3_2:79857220-79857239 | Msa0428850:intron | 25.0% |
| !! | AGTAGTACCTAATGTTATTT+GGG | - | chr3_2:79857346-79857365 | None:intergenic | 25.0% |
| ! | TTAAAGGAATAAATTCCATG+GGG | - | chr3_2:79857377-79857396 | None:intergenic | 25.0% |
| !!! | ATGAGTTTTTTCTGTTCTAA+TGG | + | chr3_2:79857448-79857467 | Msa0428850:intron | 25.0% |
| !!! | TTTTTTGTTTGGTAATCACT+AGG | + | chr3_2:79857498-79857517 | Msa0428850:intron | 25.0% |
| !! | AACAAATTTTACTGCCAATT+AGG | + | chr3_2:79857788-79857807 | Msa0428850:exon | 25.0% |
| ! | CTTCATTCATTAACATATAG+AGG | - | chr3_2:79857825-79857844 | None:intergenic | 25.0% |
| ! | CTCTATATGTTAATGAATGA+AGG | + | chr3_2:79857823-79857842 | Msa0428850:three_prime_UTR | 25.0% |
| ! | GTAAAACACTTAAAAATGGA+AGG | - | chr3_2:79857943-79857962 | None:intergenic | 25.0% |
| !! | AATTATTGCCTATTTTCTTG+AGG | + | chr3_2:79857964-79857983 | Msa0428850:three_prime_UTR | 25.0% |
| !!! | GACACTGAAGTTTTATTATA+TGG | + | chr3_2:79857986-79858005 | Msa0428850:three_prime_UTR | 25.0% |
| GAGAGAAATAGAAAATGATG+AGG | - | chr3_2:79855704-79855723 | None:intergenic | 30.0% | |
| ! | GTTTTCTACCTTAAGATGAA+GGG | + | chr3_2:79856171-79856190 | Msa0428850:CDS | 30.0% |
| TTTGTGGATCTGTAATTGAA+AGG | + | chr3_2:79856549-79856568 | Msa0428850:intron | 30.0% | |
| TGTAATTGAAAGGTTTGTGA+TGG | + | chr3_2:79856559-79856578 | Msa0428850:intron | 30.0% | |
| !!! | AATGTGTTCCTTTGTTTTAC+AGG | + | chr3_2:79856585-79856604 | Msa0428850:intron | 30.0% |
| CTTATTTCCATTACTTCTAC+AGG | - | chr3_2:79856887-79856906 | None:intergenic | 30.0% | |
| ACTCTGATCAAATAGTGTAA+GGG | - | chr3_2:79856989-79857008 | None:intergenic | 30.0% | |
| AACTCTGATCAAATAGTGTA+AGG | - | chr3_2:79856990-79857009 | None:intergenic | 30.0% | |
| ! | ACACTATTTGATCAGAGTTT+TGG | + | chr3_2:79856991-79857010 | Msa0428850:intron | 30.0% |
| AAATAATAGATTCCACCGTT+GGG | - | chr3_2:79857039-79857058 | None:intergenic | 30.0% | |
| AAAATAATAGATTCCACCGT+TGG | - | chr3_2:79857040-79857059 | None:intergenic | 30.0% | |
| AATAAGGATACCAAAAAAGG+AGG | - | chr3_2:79857172-79857191 | None:intergenic | 30.0% | |
| ! | TGTCAAGTATTGTTTATTGG+TGG | + | chr3_2:79857223-79857242 | Msa0428850:intron | 30.0% |
| GAGTAGTACCTAATGTTATT+TGG | - | chr3_2:79857347-79857366 | None:intergenic | 30.0% | |
| !! | TGTATTGATCTTGGTTTGTT+TGG | + | chr3_2:79857703-79857722 | Msa0428850:intron | 30.0% |
| ! | AGCTGCTTCTTTAATTTCAT+CGG | - | chr3_2:79857745-79857764 | None:intergenic | 30.0% |
| ATTTGTTTACTGCTGTTCAT+CGG | - | chr3_2:79857775-79857794 | None:intergenic | 30.0% | |
| TGTTAATGAATGAAGGAAGA+AGG | + | chr3_2:79857830-79857849 | Msa0428850:three_prime_UTR | 30.0% | |
| !!! | GAAAGTGAGATCTGGTTTTA+GGG | - | chr3_2:79855761-79855780 | None:intergenic | 35.0% |
| !!! | AGAAAGTGAGATCTGGTTTT+AGG | - | chr3_2:79855762-79855781 | None:intergenic | 35.0% |
| !! | CTCTCTCTAGAATTCAACAA+TGG | + | chr3_2:79855780-79855799 | Msa0428850:exon | 35.0% |
| !! | TCTCTAGAATTCAACAATGG+CGG | + | chr3_2:79855783-79855802 | Msa0428850:exon | 35.0% |
| CATCTTAAGGTAGAAAACCT+TGG | - | chr3_2:79856169-79856188 | None:intergenic | 35.0% | |
| ! | GGTTTTCTACCTTAAGATGA+AGG | + | chr3_2:79856170-79856189 | Msa0428850:CDS | 35.0% |
| TGCAATGTCCTGTAAAACAA+AGG | - | chr3_2:79856596-79856615 | None:intergenic | 35.0% | |
| ACTTCTACAGGAAAACAGTT+TGG | - | chr3_2:79856875-79856894 | None:intergenic | 35.0% | |
| ! | CTGTTTTCCTGTAGAAGTAA+TGG | + | chr3_2:79856877-79856896 | Msa0428850:intron | 35.0% |
| AATAATAGATTCCACCGTTG+GGG | - | chr3_2:79857038-79857057 | None:intergenic | 35.0% | |
| TGGATTCTACTAACCACTTA+TGG | + | chr3_2:79857140-79857159 | Msa0428850:intron | 35.0% | |
| AGGTCAAGTAGGCAATAATA+AGG | - | chr3_2:79857188-79857207 | None:intergenic | 35.0% | |
| !! | ATTTTAGGTGTAGGTCAAGT+AGG | - | chr3_2:79857199-79857218 | None:intergenic | 35.0% |
| !! | TGACAACTCATTTTAGGTGT+AGG | - | chr3_2:79857208-79857227 | None:intergenic | 35.0% |
| !! | ATCTTGGTTTGTTTGGTTTC+AGG | + | chr3_2:79857710-79857729 | Msa0428850:intron | 35.0% |
| ! | TTTGTTTGGTTTCAGGATGA+TGG | + | chr3_2:79857717-79857736 | Msa0428850:intron | 35.0% |
| TTTGTTTACTGCTGTTCATC+GGG | - | chr3_2:79857774-79857793 | None:intergenic | 35.0% | |
| AGGAGAAGTTTGATCCTAAT+TGG | - | chr3_2:79857805-79857824 | None:intergenic | 35.0% | |
| TTCATGTCTGTTATGAGTTC+TGG | + | chr3_2:79857893-79857912 | Msa0428850:three_prime_UTR | 35.0% | |
| TTCAGTGTCCTCAAGAAAAT+AGG | - | chr3_2:79857975-79857994 | None:intergenic | 35.0% | |
| TAATATCCCCTCACCAAATT+CGG | - | chr3_2:79858057-79858076 | None:intergenic | 35.0% | |
| TAGAGAGAGAAAGTGAGATC+TGG | - | chr3_2:79855769-79855788 | None:intergenic | 40.0% | |
| ! | CTACCGATCTAAGATCGAAT+CGG | + | chr3_2:79856068-79856087 | Msa0428850:CDS | 40.0% |
| GAGCTTTCTAACATCTGTGA+CGG | + | chr3_2:79856090-79856109 | Msa0428850:CDS | 40.0% | |
| GTAGAAAACCTTGGAATCAC+CGG | - | chr3_2:79856160-79856179 | None:intergenic | 40.0% | |
| GGTAATCTCCCTTCATCTTA+AGG | - | chr3_2:79856182-79856201 | None:intergenic | 40.0% | |
| AGATGAAGGGAGATTACCAT+AGG | + | chr3_2:79856184-79856203 | Msa0428850:CDS | 40.0% | |
| TGAACTCAGCAAGATACCTA+TGG | - | chr3_2:79856203-79856222 | None:intergenic | 40.0% | |
| TATCTTGCTGAGTTCAAGAC+TGG | + | chr3_2:79856207-79856226 | Msa0428850:CDS | 40.0% | |
| AACCTGAGCAGATTTGTAAG+CGG | - | chr3_2:79856268-79856287 | None:intergenic | 40.0% | |
| AACCTGTTTAGCAAGATTGC+AGG | - | chr3_2:79856713-79856732 | None:intergenic | 40.0% | |
| ATAATAGATTCCACCGTTGG+GGG | - | chr3_2:79857037-79857056 | None:intergenic | 40.0% | |
| ! | GCAACAATGATGTTGCGTTT+TGG | + | chr3_2:79857120-79857139 | Msa0428850:intron | 40.0% |
| !!! | ATGGATCAGACCTCCTTTTT+TGG | + | chr3_2:79857159-79857178 | Msa0428850:intron | 40.0% |
| GAAGTTATGCTCTTGCTACT+AGG | - | chr3_2:79857425-79857444 | None:intergenic | 40.0% | |
| TGATGAAGCAATTGCTGAAC+TGG | + | chr3_2:79857525-79857544 | Msa0428850:CDS | 40.0% | |
| TTCGTGATAATCTCACCCTA+TGG | + | chr3_2:79857599-79857618 | Msa0428850:CDS | 40.0% | |
| AATCAATACCTGCATGTCAG+AGG | - | chr3_2:79857626-79857645 | None:intergenic | 40.0% | |
| ! | TGCTTGTTGCCAATCTCTTT+GGG | + | chr3_2:79857853-79857872 | Msa0428850:three_prime_UTR | 40.0% |
| !!! | TCTTTGGGTGCTGAGATTTT+AGG | + | chr3_2:79857868-79857887 | Msa0428850:three_prime_UTR | 40.0% |
| !! | TTATGAGTTCTGGATGTCCT+GGG | + | chr3_2:79857903-79857922 | Msa0428850:three_prime_UTR | 40.0% |
| AAACTTGATCTCGCCGAATT+TGG | + | chr3_2:79858041-79858060 | Msa0428850:three_prime_UTR | 40.0% | |
| ! | TTTTATGGGTCATGAACTCG+TGG | + | chr3_2:79858084-79858103 | Msa0428850:three_prime_UTR | 40.0% |
| GTTATATTTGAGGGAACTCG+TGG | + | chr3_2:79858130-79858149 | Msa0428850:three_prime_UTR | 40.0% | |
| ! | CGTGGTAGTTTTTGTATGTG+AGG | + | chr3_2:79858148-79858167 | Msa0428850:three_prime_UTR | 40.0% |
| ATGTAAACGTTCTCTTCCCG+AGG | - | chr3_2:79855820-79855839 | None:intergenic | 45.0% | |
| TCGGGAAGAGAACGTTTACA+TGG | + | chr3_2:79855819-79855838 | Msa0428850:CDS | 45.0% | |
| CACCATTTCTTCGTAGCGTT+CGG | - | chr3_2:79855863-79855882 | None:intergenic | 45.0% | |
| ! | CGAAGAAATGGTGGAGTTCA+TGG | + | chr3_2:79855870-79855889 | Msa0428850:CDS | 45.0% |
| GACGGTGAGTTCTTCGTTAT+CGG | - | chr3_2:79855914-79855933 | None:intergenic | 45.0% | |
| TCTTGTAGGCTACAGAGAGA+AGG | - | chr3_2:79855948-79855967 | None:intergenic | 45.0% | |
| GTAGCCTACAAGAACGTCAT+CGG | + | chr3_2:79855955-79855974 | Msa0428850:CDS | 45.0% | |
| TTCCTCGATCGAACAGAAAG+AGG | + | chr3_2:79856005-79856024 | Msa0428850:CDS | 45.0% | |
| CGATCTTAGATCGGTAGTCA+CGG | - | chr3_2:79856065-79856084 | None:intergenic | 45.0% | |
| ! | GCTCCGATTCGATCTTAGAT+CGG | - | chr3_2:79856074-79856093 | None:intergenic | 45.0% |
| TGCCACCAACTCATCCAATT+AGG | + | chr3_2:79856626-79856645 | Msa0428850:CDS | 45.0% | |
| ! | AGCCTAATTGGATGAGTTGG+TGG | - | chr3_2:79856631-79856650 | None:intergenic | 45.0% |
| ACCAACTCATCCAATTAGGC+TGG | + | chr3_2:79856630-79856649 | Msa0428850:CDS | 45.0% | |
| CCAACTCATCCAATTAGGCT+GGG | + | chr3_2:79856631-79856650 | Msa0428850:CDS | 45.0% | |
| TGCCTGCAATCTTGCTAAAC+AGG | + | chr3_2:79856708-79856727 | Msa0428850:CDS | 45.0% | |
| TAATAGATTCCACCGTTGGG+GGG | - | chr3_2:79857036-79857055 | None:intergenic | 45.0% | |
| AAGGAGGTCTGATCCATAAG+TGG | - | chr3_2:79857156-79857175 | None:intergenic | 45.0% | |
| GGTGGTGCCCAAATAACATT+AGG | + | chr3_2:79857336-79857355 | Msa0428850:intron | 45.0% | |
| ATTGCTGAACTGGATACCCT+TGG | + | chr3_2:79857535-79857554 | Msa0428850:CDS | 45.0% | |
| CTTGTATGATTCCTCGCCAA+GGG | - | chr3_2:79857554-79857573 | None:intergenic | 45.0% | |
| TACTGCTGTTCATCGGGTTT+AGG | - | chr3_2:79857768-79857787 | None:intergenic | 45.0% | |
| ! | GTGCTTGTTGCCAATCTCTT+TGG | + | chr3_2:79857852-79857871 | Msa0428850:three_prime_UTR | 45.0% |
| ATCTCAGCACCCAAAGAGAT+TGG | - | chr3_2:79857865-79857884 | None:intergenic | 45.0% | |
| !! | GTTATGAGTTCTGGATGTCC+TGG | + | chr3_2:79857902-79857921 | Msa0428850:three_prime_UTR | 45.0% |
| AGGACAAACTAAAACAGCCC+AGG | - | chr3_2:79857923-79857942 | None:intergenic | 45.0% | |
| ! | TTCGTAGCGTTCGGCTTGTT+CGG | - | chr3_2:79855854-79855873 | None:intergenic | 50.0% |
| AGCCGAACGCTACGAAGAAA+TGG | + | chr3_2:79855858-79855877 | Msa0428850:CDS | 50.0% | |
| CGAACGCTACGAAGAAATGG+TGG | + | chr3_2:79855861-79855880 | Msa0428850:CDS | 50.0% | |
| ! | TTCTTCGTTATCGGCGTTGG+CGG | - | chr3_2:79855905-79855924 | None:intergenic | 50.0% |
| GAGTTCTTCGTTATCGGCGT+TGG | - | chr3_2:79855908-79855927 | None:intergenic | 50.0% | |
| AAGAACTCACCGTCGAAGAG+AGG | + | chr3_2:79855920-79855939 | Msa0428850:CDS | 50.0% | |
| GAGAAGGTTCCTCTCTTCGA+CGG | - | chr3_2:79855932-79855951 | None:intergenic | 50.0% | |
| TGCTCCGATGACGTTCTTGT+AGG | - | chr3_2:79855962-79855981 | None:intergenic | 50.0% | |
| CTCCTCTTTCTGTTCGATCG+AGG | - | chr3_2:79856010-79856029 | None:intergenic | 50.0% | |
| AGATCGGTAGTCACGGATGA+CGG | - | chr3_2:79856058-79856077 | None:intergenic | 50.0% | |
| AAGCAGCGGAAGGAATGAGA+CGG | - | chr3_2:79856137-79856156 | None:intergenic | 50.0% | |
| CCCAGCCTAATTGGATGAGT+TGG | - | chr3_2:79856634-79856653 | None:intergenic | 50.0% | |
| AGAGCAAGACCCAGCCTAAT+TGG | - | chr3_2:79856643-79856662 | None:intergenic | 50.0% | |
| TGAAGAAATTGGCCCCCCAA+CGG | + | chr3_2:79857021-79857040 | Msa0428850:intron | 50.0% | |
| ACACCTTGCTCTAGCCTGTA+GGG | + | chr3_2:79857310-79857329 | Msa0428850:intron | 50.0% | |
| TACTACTCGTGTAGTCCCCA+TGG | + | chr3_2:79857359-79857378 | Msa0428850:intron | 50.0% | |
| CCTTGTATGATTCCTCGCCA+AGG | - | chr3_2:79857555-79857574 | None:intergenic | 50.0% | |
| CCTTGGCGAGGAATCATACA+AGG | + | chr3_2:79857552-79857571 | Msa0428850:CDS | 50.0% | |
| CTGCATGTCAGAGGTCCATA+GGG | - | chr3_2:79857617-79857636 | None:intergenic | 50.0% | |
| ! | TGATCTCGCCGAATTTGGTG+AGG | + | chr3_2:79858046-79858065 | Msa0428850:three_prime_UTR | 50.0% |
| ! | GATCTCGCCGAATTTGGTGA+GGG | + | chr3_2:79858047-79858066 | Msa0428850:three_prime_UTR | 50.0% |
| ! | ATCTCGCCGAATTTGGTGAG+GGG | + | chr3_2:79858048-79858067 | Msa0428850:three_prime_UTR | 50.0% |
| ATGGGTCATGAACTCGTGGT+AGG | + | chr3_2:79858088-79858107 | Msa0428850:three_prime_UTR | 50.0% | |
| TGGGTCATGAACTCGTGGTA+GGG | + | chr3_2:79858089-79858108 | Msa0428850:three_prime_UTR | 50.0% | |
| CTCTTCCCGAGGTGAATGAG+CGG | - | chr3_2:79855809-79855828 | None:intergenic | 55.0% | |
| GAACAGAAAGAGGAGAGCCG+CGG | + | chr3_2:79856015-79856034 | Msa0428850:CDS | 55.0% | |
| AAACGTGATCCTCGTTGCCG+CGG | - | chr3_2:79856035-79856054 | None:intergenic | 55.0% | |
| AGCAGCGGAAGGAATGAGAC+GGG | - | chr3_2:79856136-79856155 | None:intergenic | 55.0% | |
| CTCATTCCTTCCGCTGCTTC+CGG | + | chr3_2:79856138-79856157 | Msa0428850:CDS | 55.0% | |
| CTTGGAATCACCGGAAGCAG+CGG | - | chr3_2:79856151-79856170 | None:intergenic | 55.0% | |
| CGCCGCTTACAAATCTGCTC+AGG | + | chr3_2:79856263-79856282 | Msa0428850:CDS | 55.0% | |
| GCAAGATTGCAGGCACGATC+AGG | - | chr3_2:79856703-79856722 | None:intergenic | 55.0% | |
| GACACCTTGCTCTAGCCTGT+AGG | + | chr3_2:79857309-79857328 | Msa0428850:intron | 55.0% | |
| AGTCCCTACAGGCTAGAGCA+AGG | - | chr3_2:79857316-79857335 | None:intergenic | 55.0% | |
| TTGCTCTAGCCTGTAGGGAC+TGG | + | chr3_2:79857315-79857334 | Msa0428850:intron | 55.0% | |
| TGAACTGGATACCCTTGGCG+AGG | + | chr3_2:79857540-79857559 | Msa0428850:CDS | 55.0% | |
| CCTGCATGTCAGAGGTCCAT+AGG | - | chr3_2:79857618-79857637 | None:intergenic | 55.0% | |
| CCTATGGACCTCTGACATGC+AGG | + | chr3_2:79857615-79857634 | Msa0428850:CDS | 55.0% | |
| GAATCACCGGAAGCAGCGGA+AGG | - | chr3_2:79856147-79856166 | None:intergenic | 60.0% | |
| CGCTGCTTCCGGTGATTCCA+AGG | + | chr3_2:79856149-79856168 | Msa0428850:CDS | 60.0% | |
| CTCAGCAGCCTCCTTACGCT+CGG | - | chr3_2:79856235-79856254 | None:intergenic | 60.0% | |
| AGAAATTGGCCCCCCAACGG+TGG | + | chr3_2:79857024-79857043 | Msa0428850:intron | 60.0% | |
| CTCTAGCCTGTAGGGACTGG+TGG | + | chr3_2:79857318-79857337 | Msa0428850:intron | 60.0% | |
| TGGCGGCCGCTCATTCACCT+CGG | + | chr3_2:79855800-79855819 | Msa0428850:CDS | 65.0% | |
| TCGGAGCACGACGTGCTTCG+TGG | + | chr3_2:79855974-79855993 | Msa0428850:CDS | 65.0% | |
| ! | CAAGACTGGCGCCGAGCGTA+AGG | + | chr3_2:79856221-79856240 | Msa0428850:CDS | 65.0% |
| TGGGCACCACCAGTCCCTAC+AGG | - | chr3_2:79857327-79857346 | None:intergenic | 65.0% | |
| GGCGGCCGCTCATTCACCTC+GGG | + | chr3_2:79855801-79855820 | Msa0428850:CDS | 70.0% | |
| AGAGGAGAGCCGCGGCAACG+AGG | + | chr3_2:79856023-79856042 | Msa0428850:CDS | 70.0% | |
| ! | GACTGGCGCCGAGCGTAAGG+AGG | + | chr3_2:79856224-79856243 | Msa0428850:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 79855696 | 79858277 | 79855696 | ID=Msa0428850;Name=Msa0428850 |
| chr3_2 | mRNA | 79855696 | 79858277 | 79855696 | ID=Msa0428850-mRNA-1;Parent=Msa0428850;Name=Msa0428850-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|1|1|4|489|260 |
| chr3_2 | exon | 79855696 | 79856284 | 79855696 | ID=Msa0428850-mRNA-1:exon:21594;Parent=Msa0428850-mRNA-1 |
| chr3_2 | exon | 79856607 | 79856729 | 79856607 | ID=Msa0428850-mRNA-1:exon:21595;Parent=Msa0428850-mRNA-1 |
| chr3_2 | exon | 79857520 | 79857636 | 79857520 | ID=Msa0428850-mRNA-1:exon:21596;Parent=Msa0428850-mRNA-1 |
| chr3_2 | exon | 79857732 | 79858277 | 79857732 | ID=Msa0428850-mRNA-1:exon:21597;Parent=Msa0428850-mRNA-1 |
| chr3_2 | five_prime_UTR | 79855696 | 79855798 | 79855696 | ID=Msa0428850-mRNA-1:five_prime_utr;Parent=Msa0428850-mRNA-1 |
| chr3_2 | CDS | 79855799 | 79856284 | 79855799 | ID=Msa0428850-mRNA-1:cds;Parent=Msa0428850-mRNA-1 |
| chr3_2 | CDS | 79856607 | 79856729 | 79856607 | ID=Msa0428850-mRNA-1:cds;Parent=Msa0428850-mRNA-1 |
| chr3_2 | CDS | 79857520 | 79857636 | 79857520 | ID=Msa0428850-mRNA-1:cds;Parent=Msa0428850-mRNA-1 |
| chr3_2 | CDS | 79857732 | 79857788 | 79857732 | ID=Msa0428850-mRNA-1:cds;Parent=Msa0428850-mRNA-1 |
| chr3_2 | three_prime_UTR | 79857789 | 79858277 | 79857789 | ID=Msa0428850-mRNA-1:three_prime_utr;Parent=Msa0428850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
