Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384530 | XP_013462149.1 | 92.899 | 338 | 3 | 2 | 1 | 330 | 1 | 325 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384530 | sp|Q9FWS6|BBD1_ARATH | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.14e-148 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384530 | B7FJ72 | 92.899 | 338 | 3 | 2 | 1 | 330 | 1 | 325 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0384530 | 0.821208 | 4.561851e-53 | -8.615850e-47 |
| Msa0064550 | Msa0384530 | 0.832061 | 1.171604e-55 | -8.615850e-47 |
| Msa0108070 | Msa0384530 | 0.820571 | 6.393849e-53 | -8.615850e-47 |
| Msa0109490 | Msa0384530 | 0.843166 | 1.655941e-58 | -8.615850e-47 |
| Msa0154240 | Msa0384530 | 0.818939 | 1.508788e-52 | -8.615850e-47 |
| Msa0154270 | Msa0384530 | 0.836170 | 1.094808e-56 | -8.615850e-47 |
| Msa0197030 | Msa0384530 | 0.802404 | 5.700695e-49 | -8.615850e-47 |
| Msa0379340 | Msa0384530 | -0.814876 | 1.232150e-51 | -8.615850e-47 |
| Msa0384530 | Msa0392050 | 0.807043 | 6.128734e-50 | -8.615850e-47 |
| Msa0384530 | Msa0412190 | 0.839262 | 1.760503e-57 | -8.615850e-47 |
| Msa0384530 | Msa0428850 | -0.817433 | 3.306319e-52 | -8.615850e-47 |
| Msa0384530 | Msa0435010 | 0.914667 | 1.465058e-84 | -8.615850e-47 |
| Msa0384530 | Msa0469950 | 0.807588 | 4.698442e-50 | -8.615850e-47 |
| Msa0384530 | Msa0479030 | 0.912402 | 2.029067e-83 | -8.615850e-47 |
| Msa0384530 | Msa0479100 | 0.898822 | 3.641183e-77 | -8.615850e-47 |
| Msa0384530 | Msa0479950 | 0.925391 | 1.955213e-90 | -8.615850e-47 |
| Msa0384530 | Msa0530340 | 0.819119 | 1.373222e-52 | -8.615850e-47 |
| Msa0384530 | Msa0549540 | 0.829475 | 5.041121e-55 | -8.615850e-47 |
| Msa0384530 | Msa0556070 | 0.814113 | 1.817828e-51 | -8.615850e-47 |
| Msa0384530 | Msa0570680 | 0.810182 | 1.308884e-50 | -8.615850e-47 |
| Msa0384530 | Msa0604880 | 0.813745 | 2.191272e-51 | -8.615850e-47 |
| Msa0384530 | Msa0605250 | 0.802348 | 5.854369e-49 | -8.615850e-47 |
| Msa0384530 | Msa0627050 | 0.828102 | 1.083399e-54 | -8.615850e-47 |
| Msa0384530 | Msa0646190 | 0.805528 | 1.277991e-49 | -8.615850e-47 |
| Msa0384530 | Msa0651400 | 0.801782 | 7.654909e-49 | -8.615850e-47 |
| Msa0384530 | Msa0675010 | 0.827066 | 1.920793e-54 | -8.615850e-47 |
| Msa0384530 | Msa0709660 | 0.922385 | 1.053760e-88 | -8.615850e-47 |
| Msa0384530 | Msa0749150 | 0.825895 | 3.652759e-54 | -8.615850e-47 |
| Msa0384530 | Msa0792880 | 0.823372 | 1.434797e-53 | -8.615850e-47 |
| Msa0384530 | Msa0828900 | 0.823131 | 1.634017e-53 | -8.615850e-47 |
| Msa0384530 | Msa0860920 | 0.810104 | 1.360493e-50 | -8.615850e-47 |
| Msa0384530 | Msa0903000 | 0.838744 | 2.397075e-57 | -8.615850e-47 |
| Msa0384530 | Msa0935390 | 0.826010 | 3.429620e-54 | -8.615850e-47 |
| Msa0384530 | Msa0984000 | 0.844486 | 7.338107e-59 | -8.615850e-47 |
| Msa0384530 | Msa1119250 | -0.803555 | 3.296716e-49 | -8.615850e-47 |
| Msa0384530 | Msa1144730 | 0.807148 | 5.823690e-50 | -8.615850e-47 |
| Msa0384530 | Msa1173380 | 0.825459 | 4.633068e-54 | -8.615850e-47 |
| Msa0384530 | Msa1178120 | 0.815939 | 7.147487e-52 | -8.615850e-47 |
| Msa0384530 | Msa1180050 | 0.826189 | 3.109727e-54 | -8.615850e-47 |
| Msa0384530 | Msa1232270 | 0.822621 | 2.147644e-53 | -8.615850e-47 |
| Msa0384530 | Msa1252300 | 0.823126 | 1.638445e-53 | -8.615850e-47 |
| Msa0384530 | Msa1270770 | 0.820179 | 7.864820e-53 | -8.615850e-47 |
| Msa0384530 | Msa1313050 | 0.815260 | 1.012492e-51 | -8.615850e-47 |
| Msa0384530 | Msa1354090 | 0.802847 | 4.619225e-49 | -8.615850e-47 |
| Msa0384530 | Msa1434660 | 0.813308 | 2.733330e-51 | -8.615850e-47 |
| Msa0384530 | Msa1463560 | -0.814351 | 1.610377e-51 | -8.615850e-47 |
| Msa0276590 | Msa0384530 | 0.802075 | 6.661894e-49 | -8.615850e-47 |
| Msa0344680 | Msa0384530 | 0.812303 | 4.536549e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384530 | MtrunA17_Chr3g0141831 | 92.899 | 338 | 3 | 2 | 1 | 330 | 1 | 325 | 0.0 | 645 |
| Msa0384530 | MtrunA17_Chr1g0155531 | 64.809 | 341 | 87 | 4 | 4 | 327 | 1 | 325 | 7.06e-158 | 444 |
| Msa0384530 | MtrunA17_Chr5g0406211 | 33.838 | 198 | 103 | 6 | 131 | 318 | 141 | 320 | 7.87e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384530 | AT1G75380.3 | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.19e-149 | 423 |
| Msa0384530 | AT1G75380.1 | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.19e-149 | 423 |
| Msa0384530 | AT1G75380.4 | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.19e-149 | 423 |
| Msa0384530 | AT1G75380.2 | 67.314 | 309 | 77 | 4 | 29 | 329 | 33 | 325 | 3.19e-149 | 423 |
| Msa0384530 | AT1G19660.2 | 66.007 | 303 | 80 | 4 | 29 | 322 | 36 | 324 | 1.39e-144 | 411 |
| Msa0384530 | AT1G19660.1 | 66.007 | 303 | 80 | 4 | 29 | 322 | 36 | 324 | 1.39e-144 | 411 |
| Msa0384530 | AT1G19660.3 | 68.794 | 282 | 78 | 3 | 29 | 301 | 36 | 316 | 3.89e-141 | 402 |
| Msa0384530 | AT5G66050.2 | 34.171 | 199 | 102 | 6 | 130 | 318 | 49 | 228 | 1.97e-23 | 97.4 |
| Msa0384530 | AT5G66050.3 | 34.171 | 199 | 102 | 6 | 130 | 318 | 143 | 322 | 4.86e-23 | 97.8 |
| Msa0384530 | AT5G66050.1 | 34.171 | 199 | 102 | 6 | 130 | 318 | 143 | 322 | 5.26e-23 | 98.2 |
| Msa0384530 | AT5G66050.4 | 34.706 | 170 | 95 | 5 | 130 | 289 | 143 | 306 | 1.98e-18 | 85.1 |
Find 102 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGACCAACTTAATCAATTT+AGG | 0.211918 | 3_1:+87717666 | Msa0384530:CDS |
| TATACAAGTCAACAAGTATT+TGG | 0.238673 | 3_1:+87717012 | Msa0384530:CDS |
| ACATGGCAAGAAAGGGAATT+AGG | 0.247322 | 3_1:-87714886 | None:intergenic |
| TCCACTGTTAATGTGTATAA+TGG | 0.251102 | 3_1:+87718070 | Msa0384530:three_prime_UTR |
| ATTTAATTTAATTTAACTAT+TGG | 0.308594 | 3_1:-87714622 | None:intergenic |
| GTAGGTTTGAATGGATAAAA+TGG | 0.329200 | 3_1:+87714750 | Msa0384530:intron |
| CGATCCAGTTCAGTAAATAA+TGG | 0.329877 | 3_1:-87717103 | None:intergenic |
| GGTTGTGCTGTAAGAATTAC+AGG | 0.337371 | 3_1:+87718124 | Msa0384530:three_prime_UTR |
| TCCATCTTCAACACAATTGC+AGG | 0.355266 | 3_1:-87715988 | None:intergenic |
| TTCAAATGGCAGTGGAAGTA+TGG | 0.360002 | 3_1:+87714957 | Msa0384530:CDS |
| GGACCAACTTAATCAATTTA+GGG | 0.364117 | 3_1:+87717667 | Msa0384530:CDS |
| GTCCTCCATGAGGGCTGTTA+TGG | 0.367780 | 3_1:-87715942 | None:intergenic |
| CCCTCATGGAGGACTTCTTC+CGG | 0.368244 | 3_1:+87715951 | Msa0384530:CDS |
| TGGCCCATTATTTACTGAAC+TGG | 0.375188 | 3_1:+87717099 | Msa0384530:CDS |
| GAGGTGAAGAGTGGAGGAGA+TGG | 0.376747 | 3_1:+87715877 | Msa0384530:CDS |
| TCATATTTACATGGCAAGAA+AGG | 0.393581 | 3_1:-87714894 | None:intergenic |
| ATGAAATGACAAACAGAAAC+AGG | 0.396718 | 3_1:+87718207 | Msa0384530:three_prime_UTR |
| TTTGGTTGTGTAGGTTTGAA+TGG | 0.399839 | 3_1:+87714741 | Msa0384530:intron |
| CAGAAAAGAAAGCGAATAAC+AGG | 0.401391 | 3_1:+87717690 | Msa0384530:CDS |
| TCAACACAAGGCTTACCATT+TGG | 0.407225 | 3_1:-87717323 | None:intergenic |
| AAATACTTGTTGACTTGTAT+AGG | 0.410743 | 3_1:-87717010 | None:intergenic |
| AAGAGTTACTAAGAGAGTTC+AGG | 0.417338 | 3_1:+87716557 | Msa0384530:CDS |
| GCGTTGATTGGTCCAATCAT+AGG | 0.427412 | 3_1:-87714811 | None:intergenic |
| GATGCCAAGTGTCTTGTTAA+TGG | 0.431725 | 3_1:+87716198 | Msa0384530:CDS |
| CTACTACAACCAGCGTTGAT+TGG | 0.432408 | 3_1:-87714823 | None:intergenic |
| GGAATGAGAGTAATTGAATC+AGG | 0.437048 | 3_1:+87717046 | Msa0384530:CDS |
| CTGCCCTAAATTGATTAAGT+TGG | 0.437910 | 3_1:-87717670 | None:intergenic |
| GATCCAGTTCAGTAAATAAT+GGG | 0.438185 | 3_1:-87717102 | None:intergenic |
| TCCCATCGACATTCCAATGC+TGG | 0.446559 | 3_1:-87717908 | None:intergenic |
| TTCTTGTTTGTGTAATGTAA+AGG | 0.455596 | 3_1:-87714502 | None:intergenic |
| GCAGGATGTGGTGCATAATC+CGG | 0.457419 | 3_1:-87715970 | None:intergenic |
| AGGTGAAGAGTGGAGGAGAT+GGG | 0.465253 | 3_1:+87715878 | Msa0384530:CDS |
| TGACTTATTTGCAGACCAAA+TGG | 0.466130 | 3_1:+87717308 | Msa0384530:intron |
| GAAGGAGATGATTGACAAGA+TGG | 0.467393 | 3_1:+87716395 | Msa0384530:CDS |
| GGAAGCAGCATATTGCTGAT+AGG | 0.469045 | 3_1:+87718103 | Msa0384530:three_prime_UTR |
| TTGGTACATAATAATAAGAA+TGG | 0.481356 | 3_1:-87714603 | None:intergenic |
| CATATTTACATGGCAAGAAA+GGG | 0.486267 | 3_1:-87714893 | None:intergenic |
| AACTCATCTTCAAATGGCAG+TGG | 0.487751 | 3_1:+87714949 | Msa0384530:CDS |
| TGCACTTTCTCATATTTACA+TGG | 0.491468 | 3_1:-87714903 | None:intergenic |
| AATTCTACTATTCTTGAAGC+AGG | 0.491817 | 3_1:+87715015 | Msa0384530:CDS |
| AAATAGAGAAAATTAAGATC+TGG | 0.494243 | 3_1:-87714565 | None:intergenic |
| TGTGTAGTTGAGGTGAAGAG+TGG | 0.494302 | 3_1:+87715868 | Msa0384530:intron |
| TTGAAGATGGAGGATGGAAC+TGG | 0.494500 | 3_1:+87716000 | Msa0384530:CDS |
| GATAAAATGGTTTGTGTGAA+AGG | 0.496281 | 3_1:+87714763 | Msa0384530:CDS |
| ACTCAGTCCCCTGGTTCAGA+TGG | 0.500433 | 3_1:+87717079 | Msa0384530:CDS |
| AAGTATTTGGCTTACAGTGA+TGG | 0.500663 | 3_1:+87717025 | Msa0384530:CDS |
| AAGTGTCTTGTTAATGGCAG+CGG | 0.507255 | 3_1:+87716204 | Msa0384530:CDS |
| TGCGTCCATAACAGCCCTCA+TGG | 0.507711 | 3_1:+87715937 | Msa0384530:CDS |
| GTGTATAATGGTTCATCCAT+TGG | 0.509325 | 3_1:+87718082 | Msa0384530:three_prime_UTR |
| AATAATGGGCCATCTGAACC+AGG | 0.513864 | 3_1:-87717088 | None:intergenic |
| CAGCAATATGCTGCTTCCAA+TGG | 0.516978 | 3_1:-87718098 | None:intergenic |
| GTGCAAAAGATTGAACTCCT+TGG | 0.528331 | 3_1:-87717348 | None:intergenic |
| TGTGTAAATAAATCCAGCAT+TGG | 0.528811 | 3_1:+87717895 | Msa0384530:three_prime_UTR |
| AGTTTCAACTCATCTTCAAA+TGG | 0.535944 | 3_1:+87714943 | Msa0384530:CDS |
| CAAAACTATTACCAGCGTCT+TGG | 0.537387 | 3_1:-87717403 | None:intergenic |
| ATCCAGCATTGGAATGTCGA+TGG | 0.538707 | 3_1:+87717906 | Msa0384530:three_prime_UTR |
| AACTCCTTGGTTTCAACACA+AGG | 0.539583 | 3_1:-87717335 | None:intergenic |
| AGTGTTGCTATGCCTATGAT+TGG | 0.546554 | 3_1:+87714799 | Msa0384530:CDS |
| TTTACATTACACAAACAAGA+AGG | 0.551341 | 3_1:+87714504 | Msa0384530:five_prime_UTR |
| ATGGGTTCATAGTCAAAATG+AGG | 0.552865 | 3_1:+87715896 | Msa0384530:CDS |
| AAATTAAATTAAAACGAGAT+CGG | 0.553672 | 3_1:+87714636 | Msa0384530:five_prime_UTR |
| TGCTCAGCTATATCTTTCCA+AGG | 0.554143 | 3_1:+87716590 | Msa0384530:CDS |
| TCCTGCAATTGTGTTGAAGA+TGG | 0.554227 | 3_1:+87715987 | Msa0384530:CDS |
| ATGAATTACCTTGCATCTGA+CGG | 0.554836 | 3_1:-87716759 | None:intergenic |
| TTCAACACAATTGCAGGATG+TGG | 0.559028 | 3_1:-87715982 | None:intergenic |
| AAGGAGATGATTGACAAGAT+GGG | 0.563238 | 3_1:+87716396 | Msa0384530:CDS |
| GATCGGTGATTCATCTTACA+AGG | 0.563496 | 3_1:+87714653 | Msa0384530:five_prime_UTR |
| AAATGAAGAGAAGAAAGAAG+AGG | 0.566491 | 3_1:-87714537 | None:intergenic |
| TCCAGCATTGGAATGTCGAT+GGG | 0.580170 | 3_1:+87717907 | Msa0384530:three_prime_UTR |
| AAACTGTCAACTCAGTCCCC+TGG | 0.581648 | 3_1:+87717070 | Msa0384530:CDS |
| TTGTAGTAGAATTGAATTGT+GGG | 0.582297 | 3_1:+87714837 | Msa0384530:CDS |
| TTCACTACTTGATATAAAGT+AGG | 0.583362 | 3_1:-87716375 | None:intergenic |
| GTTGTAGTAGAATTGAATTG+TGG | 0.585443 | 3_1:+87714836 | Msa0384530:CDS |
| TACTTTATATCAAGTAGTGA+AGG | 0.586601 | 3_1:+87716377 | Msa0384530:CDS |
| CATTATTTACTGAACTGGAT+CGG | 0.591707 | 3_1:+87717104 | Msa0384530:CDS |
| CAACATTGCCGTCAGATGCA+AGG | 0.598286 | 3_1:+87716751 | Msa0384530:CDS |
| ATGCAACTCTAGCTCTGTGG+AGG | 0.600499 | 3_1:+87717645 | Msa0384530:CDS |
| TTCATAGTCAAAATGAGGGA+TGG | 0.606214 | 3_1:+87715901 | Msa0384530:CDS |
| CCGGAAGAAGTCCTCCATGA+GGG | 0.609077 | 3_1:-87715951 | None:intergenic |
| AGTTACTAAGAGAGTTCAGG+AGG | 0.616947 | 3_1:+87716560 | Msa0384530:CDS |
| GCTGCCATTAACAAGACACT+TGG | 0.631772 | 3_1:-87716202 | None:intergenic |
| GACTTATGAGTATACACAAG+GGG | 0.633649 | 3_1:-87717968 | None:intergenic |
| GTAGTTGAGGTGAAGAGTGG+AGG | 0.641244 | 3_1:+87715871 | Msa0384530:intron |
| TGATAGCATCTGAAGGTCGA+AGG | 0.644393 | 3_1:-87716730 | None:intergenic |
| ATTGTGTTGAAGATGGAGGA+TGG | 0.647763 | 3_1:+87715994 | Msa0384530:CDS |
| TGGGTTCATAGTCAAAATGA+GGG | 0.648695 | 3_1:+87715897 | Msa0384530:CDS |
| CTGATGCAACTCTAGCTCTG+TGG | 0.654401 | 3_1:+87717642 | Msa0384530:CDS |
| TAAGCCTTGTGTTGAAACCA+AGG | 0.655141 | 3_1:+87717331 | Msa0384530:CDS |
| GAAGAGCGCTACCAAGACGC+TGG | 0.659837 | 3_1:+87717392 | Msa0384530:CDS |
| ATGATTGGACCAATCAACGC+TGG | 0.660475 | 3_1:+87714814 | Msa0384530:CDS |
| TGCAACTCTAGCTCTGTGGA+GGG | 0.660642 | 3_1:+87717646 | Msa0384530:CDS |
| TAATGGGCCATCTGAACCAG+GGG | 0.661956 | 3_1:-87717086 | None:intergenic |
| TACACAAGGGGAGAAGCGAA+CGG | 0.666819 | 3_1:-87717956 | None:intergenic |
| ACCATTATACACATTAACAG+TGG | 0.666861 | 3_1:-87718071 | None:intergenic |
| GCAATGTTGATAGCATCTGA+AGG | 0.668734 | 3_1:-87716737 | None:intergenic |
| TGTAGTAGAATTGAATTGTG+GGG | 0.671461 | 3_1:+87714838 | Msa0384530:CDS |
| AAGACTTATGAGTATACACA+AGG | 0.674289 | 3_1:-87717970 | None:intergenic |
| ATAATGGGCCATCTGAACCA+GGG | 0.677787 | 3_1:-87717087 | None:intergenic |
| TGCAATTGTGTTGAAGATGG+AGG | 0.695717 | 3_1:+87715990 | Msa0384530:CDS |
| TCCGGAAGAAGTCCTCCATG+AGG | 0.699210 | 3_1:-87715952 | None:intergenic |
| AGACTTATGAGTATACACAA+GGG | 0.729227 | 3_1:-87717969 | None:intergenic |
| GTCCATAACAGCCCTCATGG+AGG | 0.747707 | 3_1:+87715940 | Msa0384530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAAATTGAATTAATT+AGG | - | chr3_1:87714692-87714711 | None:intergenic | 10.0% |
| !!! | TTAATAACTAATTTGAAATT+AGG | + | chr3_1:87714713-87714732 | Msa0384530:intron | 10.0% |
| !!! | TGAAAATAAAATAGTTTTAT+GGG | - | chr3_1:87715183-87715202 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAAATAGTTTTA+TGG | - | chr3_1:87715184-87715203 | None:intergenic | 10.0% |
| !! | AAATTAAATTAAAACGAGAT+CGG | + | chr3_1:87714636-87714655 | Msa0384530:five_prime_UTR | 15.0% |
| !!! | ATTTGAAATTAGGTTAATTT+TGG | + | chr3_1:87714723-87714742 | Msa0384530:intron | 15.0% |
| !!! | GTGAAAAATTGTTTTTTTAT+TGG | + | chr3_1:87715073-87715092 | Msa0384530:intron | 15.0% |
| !!! | ACAGTTACTTTAAAAAAAAA+TGG | - | chr3_1:87715758-87715777 | None:intergenic | 15.0% |
| !!! | TTATATAAGATAGCAAATTT+TGG | + | chr3_1:87717843-87717862 | Msa0384530:intron | 15.0% |
| !! | AAATAGAGAAAATTAAGATC+TGG | - | chr3_1:87714568-87714587 | None:intergenic | 20.0% |
| !! | TTGGTACATAATAATAAGAA+TGG | - | chr3_1:87714606-87714625 | None:intergenic | 20.0% |
| !! | ATTACTCATAAAAAAGTTGT+AGG | - | chr3_1:87715541-87715560 | None:intergenic | 20.0% |
| !! | TATCTATACACTAAAGAAAT+TGG | + | chr3_1:87715576-87715595 | Msa0384530:intron | 20.0% |
| !! | AGAGTAAAATAAAATTTCCA+AGG | - | chr3_1:87715811-87715830 | None:intergenic | 20.0% |
| !!! | GAAATTTTATTTTACTCTCA+TGG | + | chr3_1:87715813-87715832 | Msa0384530:intron | 20.0% |
| !!! | TATCATACAAGTTTACTTTT+TGG | + | chr3_1:87716102-87716121 | Msa0384530:intron | 20.0% |
| !!! | TTGGATCCTATATATTATTT+TGG | + | chr3_1:87716121-87716140 | Msa0384530:intron | 20.0% |
| !! | TCATCACCAAAATAATATAT+AGG | - | chr3_1:87716130-87716149 | None:intergenic | 20.0% |
| !! | ACTACAATACAATTAAGATT+AGG | - | chr3_1:87716464-87716483 | None:intergenic | 20.0% |
| !! | TTGTTTATCAAAGATTTAAC+TGG | + | chr3_1:87716968-87716987 | Msa0384530:intron | 20.0% |
| !! | TTCTTGTTTGTGTAATGTAA+AGG | - | chr3_1:87714505-87714524 | None:intergenic | 25.0% |
| ! | TTTACATTACACAAACAAGA+AGG | + | chr3_1:87714504-87714523 | Msa0384530:five_prime_UTR | 25.0% |
| ! | TTGTAGTAGAATTGAATTGT+GGG | + | chr3_1:87714837-87714856 | Msa0384530:CDS | 25.0% |
| ! | TCATATATGCTTAGTTTAGT+TGG | + | chr3_1:87715051-87715070 | Msa0384530:intron | 25.0% |
| ! | GTAAATTAATCACATGTGTA+TGG | + | chr3_1:87715449-87715468 | Msa0384530:intron | 25.0% |
| ! | TAAAAAAGTTGTAGGTATAG+TGG | - | chr3_1:87715533-87715552 | None:intergenic | 25.0% |
| ! | AATTTGAACTATATCACTTG+AGG | - | chr3_1:87715679-87715698 | None:intergenic | 25.0% |
| ! | ATGGAGAATCAATAAAACAA+CGG | - | chr3_1:87715739-87715758 | None:intergenic | 25.0% |
| !!! | GTGAAAATAAATTTGTTGTG+TGG | + | chr3_1:87715839-87715858 | Msa0384530:intron | 25.0% |
| ! | AAAGACATACAAACGATTAT+GGG | - | chr3_1:87716036-87716055 | None:intergenic | 25.0% |
| ! | AAAAGACATACAAACGATTA+TGG | - | chr3_1:87716037-87716056 | None:intergenic | 25.0% |
| !! | ACATTTTACTACTAATGCAA+TGG | - | chr3_1:87716273-87716292 | None:intergenic | 25.0% |
| ! | TTGCATTAGTAGTAAAATGT+TGG | + | chr3_1:87716273-87716292 | Msa0384530:intron | 25.0% |
| ! | GAGAATATGTTACAGAAAAA+CGG | - | chr3_1:87716312-87716331 | None:intergenic | 25.0% |
| ! | TTCACTACTTGATATAAAGT+AGG | - | chr3_1:87716378-87716397 | None:intergenic | 25.0% |
| ! | TACTTTATATCAAGTAGTGA+AGG | + | chr3_1:87716377-87716396 | Msa0384530:CDS | 25.0% |
| !!! | GTATTACTTGTTTTTGGTAT+AGG | + | chr3_1:87716676-87716695 | Msa0384530:intron | 25.0% |
| !!! | AAATACTTGTTGACTTGTAT+AGG | - | chr3_1:87717013-87717032 | None:intergenic | 25.0% |
| ! | TATACAAGTCAACAAGTATT+TGG | + | chr3_1:87717012-87717031 | Msa0384530:CDS | 25.0% |
| ! | GAAAATCAATAATGATTAGC+AGG | - | chr3_1:87717550-87717569 | None:intergenic | 25.0% |
| AAATGAAGAGAAGAAAGAAG+AGG | - | chr3_1:87714540-87714559 | None:intergenic | 30.0% | |
| !!! | TAGGTTAATTTTGGTTGTGT+AGG | + | chr3_1:87714732-87714751 | Msa0384530:intron | 30.0% |
| GTAGGTTTGAATGGATAAAA+TGG | + | chr3_1:87714750-87714769 | Msa0384530:intron | 30.0% | |
| ! | GATAAAATGGTTTGTGTGAA+AGG | + | chr3_1:87714763-87714782 | Msa0384530:CDS | 30.0% |
| GTTGTAGTAGAATTGAATTG+TGG | + | chr3_1:87714836-87714855 | Msa0384530:CDS | 30.0% | |
| TGTAGTAGAATTGAATTGTG+GGG | + | chr3_1:87714838-87714857 | Msa0384530:CDS | 30.0% | |
| CATATTTACATGGCAAGAAA+GGG | - | chr3_1:87714896-87714915 | None:intergenic | 30.0% | |
| TCATATTTACATGGCAAGAA+AGG | - | chr3_1:87714897-87714916 | None:intergenic | 30.0% | |
| TGCACTTTCTCATATTTACA+TGG | - | chr3_1:87714906-87714925 | None:intergenic | 30.0% | |
| AGTTTCAACTCATCTTCAAA+TGG | + | chr3_1:87714943-87714962 | Msa0384530:CDS | 30.0% | |
| AATTCTACTATTCTTGAAGC+AGG | + | chr3_1:87715015-87715034 | Msa0384530:CDS | 30.0% | |
| ACACTAATTACTAACTCATG+CGG | - | chr3_1:87715118-87715137 | None:intergenic | 30.0% | |
| ATAAATAATTGGGTCTGTAC+TGG | - | chr3_1:87715383-87715402 | None:intergenic | 30.0% | |
| ! | ATACTATTGGATTTTACGTC+AGG | - | chr3_1:87715507-87715526 | None:intergenic | 30.0% |
| ATATAGTTCAAATTCCACCT+GGG | + | chr3_1:87715685-87715704 | Msa0384530:intron | 30.0% | |
| ! | TTTTATAAGACTAGAAGCCT+TGG | + | chr3_1:87715791-87715810 | Msa0384530:intron | 30.0% |
| AAGACATACAAACGATTATG+GGG | - | chr3_1:87716035-87716054 | None:intergenic | 30.0% | |
| TTCATGATGCAACATAGAAA+GGG | - | chr3_1:87716063-87716082 | None:intergenic | 30.0% | |
| ATTCATGATGCAACATAGAA+AGG | - | chr3_1:87716064-87716083 | None:intergenic | 30.0% | |
| ! | TCTCTTCCAATGTAATTTTG+TGG | + | chr3_1:87716154-87716173 | Msa0384530:intron | 30.0% |
| GATGAACCACAAAATTACAT+TGG | - | chr3_1:87716163-87716182 | None:intergenic | 30.0% | |
| ! | TGGTTCATCTTTATTTGTAG+TGG | + | chr3_1:87716174-87716193 | Msa0384530:intron | 30.0% |
| ! | ACAGAAAAACGGAATCATTT+TGG | - | chr3_1:87716301-87716320 | None:intergenic | 30.0% |
| GAACCAAACAACTAACTATA+TGG | + | chr3_1:87716334-87716353 | Msa0384530:intron | 30.0% | |
| CAACCATATAGTTAGTTGTT+TGG | - | chr3_1:87716340-87716359 | None:intergenic | 30.0% | |
| ! | AACTATATGGTTGATGTAAC+AGG | + | chr3_1:87716347-87716366 | Msa0384530:intron | 30.0% |
| !! | AAATCTGGTTTCTTTTTGTG+TGG | - | chr3_1:87716648-87716667 | None:intergenic | 30.0% |
| !! | CTGACAGTATTACTTGTTTT+TGG | + | chr3_1:87716670-87716689 | Msa0384530:intron | 30.0% |
| !!! | TACTTGTTTTTGGTATAGGT+TGG | + | chr3_1:87716680-87716699 | Msa0384530:intron | 30.0% |
| AAAACTTCTAGGTTCCATTT+AGG | - | chr3_1:87716905-87716924 | None:intergenic | 30.0% | |
| ! | TAAATGGAACCTAGAAGTTT+TGG | + | chr3_1:87716904-87716923 | Msa0384530:intron | 30.0% |
| GAATTTGATCCAAAACTTCT+AGG | - | chr3_1:87716916-87716935 | None:intergenic | 30.0% | |
| GATCCAGTTCAGTAAATAAT+GGG | - | chr3_1:87717105-87717124 | None:intergenic | 30.0% | |
| CATTATTTACTGAACTGGAT+CGG | + | chr3_1:87717104-87717123 | Msa0384530:CDS | 30.0% | |
| !!! | GTTTTGGAAGATACATTTCA+AGG | + | chr3_1:87717130-87717149 | Msa0384530:intron | 30.0% |
| AGTATTCATAATCTCTGTTC+TGG | + | chr3_1:87717174-87717193 | Msa0384530:intron | 30.0% | |
| TCACAAGATTACATTTCTTG+TGG | + | chr3_1:87717568-87717587 | Msa0384530:intron | 30.0% | |
| GGACCAACTTAATCAATTTA+GGG | + | chr3_1:87717667-87717686 | Msa0384530:CDS | 30.0% | |
| TGTGTAAATAAATCCAGCAT+TGG | + | chr3_1:87717895-87717914 | Msa0384530:three_prime_UTR | 30.0% | |
| AGACTTATGAGTATACACAA+GGG | - | chr3_1:87717972-87717991 | None:intergenic | 30.0% | |
| AAGACTTATGAGTATACACA+AGG | - | chr3_1:87717973-87717992 | None:intergenic | 30.0% | |
| TCCACTGTTAATGTGTATAA+TGG | + | chr3_1:87718070-87718089 | Msa0384530:three_prime_UTR | 30.0% | |
| ACCATTATACACATTAACAG+TGG | - | chr3_1:87718074-87718093 | None:intergenic | 30.0% | |
| ATGAAATGACAAACAGAAAC+AGG | + | chr3_1:87718207-87718226 | Msa0384530:three_prime_UTR | 30.0% | |
| TTTGGTTGTGTAGGTTTGAA+TGG | + | chr3_1:87714741-87714760 | Msa0384530:intron | 35.0% | |
| GGTATAGTGGTACATACTAT+TGG | - | chr3_1:87715520-87715539 | None:intergenic | 35.0% | |
| GATATAGTTCAAATTCCACC+TGG | + | chr3_1:87715684-87715703 | Msa0384530:intron | 35.0% | |
| TATAGTTCAAATTCCACCTG+GGG | + | chr3_1:87715686-87715705 | Msa0384530:intron | 35.0% | |
| ! | GTGGTTTTTATGTGTAGTTG+AGG | + | chr3_1:87715858-87715877 | Msa0384530:intron | 35.0% |
| ATGGGTTCATAGTCAAAATG+AGG | + | chr3_1:87715896-87715915 | Msa0384530:CDS | 35.0% | |
| TGGGTTCATAGTCAAAATGA+GGG | + | chr3_1:87715897-87715916 | Msa0384530:CDS | 35.0% | |
| TTCATAGTCAAAATGAGGGA+TGG | + | chr3_1:87715901-87715920 | Msa0384530:CDS | 35.0% | |
| TGTTGCATCATGAATCTCTA+TGG | + | chr3_1:87716069-87716088 | Msa0384530:intron | 35.0% | |
| AAGGAGATGATTGACAAGAT+GGG | + | chr3_1:87716396-87716415 | Msa0384530:CDS | 35.0% | |
| TAGGAATATGCAACAGCAAA+GGG | - | chr3_1:87716445-87716464 | None:intergenic | 35.0% | |
| TTAGGAATATGCAACAGCAA+AGG | - | chr3_1:87716446-87716465 | None:intergenic | 35.0% | |
| ACAATATATCTTTCGTGTGC+AGG | + | chr3_1:87716524-87716543 | Msa0384530:intron | 35.0% | |
| AAGAGTTACTAAGAGAGTTC+AGG | + | chr3_1:87716557-87716576 | Msa0384530:CDS | 35.0% | |
| ! | GGAAAGTATGAACTTTACCT+TGG | - | chr3_1:87716610-87716629 | None:intergenic | 35.0% |
| ! | TGGTTTCTTTTTGTGTGGTT+TGG | - | chr3_1:87716643-87716662 | None:intergenic | 35.0% |
| GTAATACTGTCAGACAAATC+TGG | - | chr3_1:87716663-87716682 | None:intergenic | 35.0% | |
| ATGAATTACCTTGCATCTGA+CGG | - | chr3_1:87716762-87716781 | None:intergenic | 35.0% | |
| AATCCAAGGAATGTGAAACT+TGG | - | chr3_1:87716854-87716873 | None:intergenic | 35.0% | |
| ! | GATTCACTGGTACAAAGTTT+TGG | + | chr3_1:87716870-87716889 | Msa0384530:intron | 35.0% |
| TTTGGCAAATGTTGCCTAAA+TGG | + | chr3_1:87716888-87716907 | Msa0384530:intron | 35.0% | |
| ! | AAGTATTTGGCTTACAGTGA+TGG | + | chr3_1:87717025-87717044 | Msa0384530:CDS | 35.0% |
| GGAATGAGAGTAATTGAATC+AGG | + | chr3_1:87717046-87717065 | Msa0384530:CDS | 35.0% | |
| CGATCCAGTTCAGTAAATAA+TGG | - | chr3_1:87717106-87717125 | None:intergenic | 35.0% | |
| AGATTCGAAGATATCTTTCG+AGG | - | chr3_1:87717223-87717242 | None:intergenic | 35.0% | |
| TATCTTCGAATCTGTCTCAT+TGG | + | chr3_1:87717230-87717249 | Msa0384530:intron | 35.0% | |
| TGACTTATTTGCAGACCAAA+TGG | + | chr3_1:87717308-87717327 | Msa0384530:intron | 35.0% | |
| GGGACCAACTTAATCAATTT+AGG | + | chr3_1:87717666-87717685 | Msa0384530:CDS | 35.0% | |
| CTGCCCTAAATTGATTAAGT+TGG | - | chr3_1:87717673-87717692 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGCGAATAAC+AGG | + | chr3_1:87717690-87717709 | Msa0384530:CDS | 35.0% | |
| AAAGAAAAGAGACCAGAAGA+AGG | - | chr3_1:87717799-87717818 | None:intergenic | 35.0% | |
| GACTTATGAGTATACACAAG+GGG | - | chr3_1:87717971-87717990 | None:intergenic | 35.0% | |
| GTGTATAATGGTTCATCCAT+TGG | + | chr3_1:87718082-87718101 | Msa0384530:three_prime_UTR | 35.0% | |
| GATCGGTGATTCATCTTACA+AGG | + | chr3_1:87714653-87714672 | Msa0384530:five_prime_UTR | 40.0% | |
| ! | AGTGTTGCTATGCCTATGAT+TGG | + | chr3_1:87714799-87714818 | Msa0384530:CDS | 40.0% |
| ACATGGCAAGAAAGGGAATT+AGG | - | chr3_1:87714889-87714908 | None:intergenic | 40.0% | |
| AACTCATCTTCAAATGGCAG+TGG | + | chr3_1:87714949-87714968 | Msa0384530:CDS | 40.0% | |
| TTCAAATGGCAGTGGAAGTA+TGG | + | chr3_1:87714957-87714976 | Msa0384530:CDS | 40.0% | |
| ATGCTGCCAAAGTTAGCAAT+CGG | + | chr3_1:87715255-87715274 | Msa0384530:intron | 40.0% | |
| ! | ATCACACCGATTGCTAACTT+TGG | - | chr3_1:87715264-87715283 | None:intergenic | 40.0% |
| ATCGAACTAACTGTAGTGTG+TGG | + | chr3_1:87715282-87715301 | Msa0384530:intron | 40.0% | |
| TCGAACTAACTGTAGTGTGT+GGG | + | chr3_1:87715283-87715302 | Msa0384530:intron | 40.0% | |
| !!! | AGGCACAATTTTTTGCAGGT+CGG | - | chr3_1:87715604-87715623 | None:intergenic | 40.0% |
| !!! | AGTGAGGCACAATTTTTTGC+AGG | - | chr3_1:87715608-87715627 | None:intergenic | 40.0% |
| AAAATCAAGTTATCGCCCAG+GGG | - | chr3_1:87715652-87715671 | None:intergenic | 40.0% | |
| CAAAATCAAGTTATCGCCCA+GGG | - | chr3_1:87715653-87715672 | None:intergenic | 40.0% | |
| ACAAAATCAAGTTATCGCCC+AGG | - | chr3_1:87715654-87715673 | None:intergenic | 40.0% | |
| ATAGTTCAAATTCCACCTGG+GGG | + | chr3_1:87715687-87715706 | Msa0384530:intron | 40.0% | |
| ! | ATCATTTTACAATAGCCCCC+AGG | - | chr3_1:87715705-87715724 | None:intergenic | 40.0% |
| TTCAACACAATTGCAGGATG+TGG | - | chr3_1:87715985-87716004 | None:intergenic | 40.0% | |
| TCCTGCAATTGTGTTGAAGA+TGG | + | chr3_1:87715987-87716006 | Msa0384530:CDS | 40.0% | |
| TCCATCTTCAACACAATTGC+AGG | - | chr3_1:87715991-87716010 | None:intergenic | 40.0% | |
| TGCAATTGTGTTGAAGATGG+AGG | + | chr3_1:87715990-87716009 | Msa0384530:CDS | 40.0% | |
| ATTGTGTTGAAGATGGAGGA+TGG | + | chr3_1:87715994-87716013 | Msa0384530:CDS | 40.0% | |
| ! | GATGCCAAGTGTCTTGTTAA+TGG | + | chr3_1:87716198-87716217 | Msa0384530:CDS | 40.0% |
| ! | AAGTGTCTTGTTAATGGCAG+CGG | + | chr3_1:87716204-87716223 | Msa0384530:CDS | 40.0% |
| GAAGGAGATGATTGACAAGA+TGG | + | chr3_1:87716395-87716414 | Msa0384530:CDS | 40.0% | |
| AGTTACTAAGAGAGTTCAGG+AGG | + | chr3_1:87716560-87716579 | Msa0384530:CDS | 40.0% | |
| TGCTCAGCTATATCTTTCCA+AGG | + | chr3_1:87716590-87716609 | Msa0384530:CDS | 40.0% | |
| !!! | TTTTTGTGTGGTTTGGTGAG+GGG | - | chr3_1:87716636-87716655 | None:intergenic | 40.0% |
| !!! | CTTTTTGTGTGGTTTGGTGA+GGG | - | chr3_1:87716637-87716656 | None:intergenic | 40.0% |
| !!! | TCTTTTTGTGTGGTTTGGTG+AGG | - | chr3_1:87716638-87716657 | None:intergenic | 40.0% |
| !! | GCAATGTTGATAGCATCTGA+AGG | - | chr3_1:87716740-87716759 | None:intergenic | 40.0% |
| TTTCCACATGCAACTTACAC+AGG | - | chr3_1:87716818-87716837 | None:intergenic | 40.0% | |
| TTCACATTCCTTGGATTCAC+TGG | + | chr3_1:87716857-87716876 | Msa0384530:intron | 40.0% | |
| ACTTTGTACCAGTGAATCCA+AGG | - | chr3_1:87716868-87716887 | None:intergenic | 40.0% | |
| TGGCCCATTATTTACTGAAC+TGG | + | chr3_1:87717099-87717118 | Msa0384530:CDS | 40.0% | |
| ATTTACTGAACTGGATCGGT+AGG | + | chr3_1:87717108-87717127 | Msa0384530:intron | 40.0% | |
| TCAACACAAGGCTTACCATT+TGG | - | chr3_1:87717326-87717345 | None:intergenic | 40.0% | |
| ! | TAAGCCTTGTGTTGAAACCA+AGG | + | chr3_1:87717331-87717350 | Msa0384530:CDS | 40.0% |
| AACTCCTTGGTTTCAACACA+AGG | - | chr3_1:87717338-87717357 | None:intergenic | 40.0% | |
| GTGCAAAAGATTGAACTCCT+TGG | - | chr3_1:87717351-87717370 | None:intergenic | 40.0% | |
| CAAAACTATTACCAGCGTCT+TGG | - | chr3_1:87717406-87717425 | None:intergenic | 40.0% | |
| TGTCACTGTGTGTTTACTCT+TGG | + | chr3_1:87717453-87717472 | Msa0384530:intron | 40.0% | |
| GGTTGTGCTGTAAGAATTAC+AGG | + | chr3_1:87718124-87718143 | Msa0384530:three_prime_UTR | 40.0% | |
| !! | GCGTTGATTGGTCCAATCAT+AGG | - | chr3_1:87714814-87714833 | None:intergenic | 45.0% |
| ATGATTGGACCAATCAACGC+TGG | + | chr3_1:87714814-87714833 | Msa0384530:CDS | 45.0% | |
| !! | CTACTACAACCAGCGTTGAT+TGG | - | chr3_1:87714826-87714845 | None:intergenic | 45.0% |
| TCAGCTTAGTGGCGAGAATA+GGG | + | chr3_1:87715315-87715334 | Msa0384530:intron | 45.0% | |
| ! | TAATTGGGTCTGTACTGGTG+TGG | - | chr3_1:87715378-87715397 | None:intergenic | 45.0% |
| ATGTGTATGGTGTACTCCAG+TGG | + | chr3_1:87715462-87715481 | Msa0384530:intron | 45.0% | |
| ATGGTGTACTCCAGTGGTAA+TGG | + | chr3_1:87715468-87715487 | Msa0384530:intron | 45.0% | |
| ! | GATTTTACGTCAGGTACTCC+GGG | - | chr3_1:87715498-87715517 | None:intergenic | 45.0% |
| ! | GGATTTTACGTCAGGTACTC+CGG | - | chr3_1:87715499-87715518 | None:intergenic | 45.0% |
| !!! | TGTGCCTCACTGATTTTGTG+AGG | + | chr3_1:87715617-87715636 | Msa0384530:intron | 45.0% |
| ! | ATTTTACAATAGCCCCCAGG+TGG | - | chr3_1:87715702-87715721 | None:intergenic | 45.0% |
| TGTGTAGTTGAGGTGAAGAG+TGG | + | chr3_1:87715868-87715887 | Msa0384530:intron | 45.0% | |
| TTGAAGATGGAGGATGGAAC+TGG | + | chr3_1:87716000-87716019 | Msa0384530:CDS | 45.0% | |
| GCTGCCATTAACAAGACACT+TGG | - | chr3_1:87716205-87716224 | None:intergenic | 45.0% | |
| !!! | TTTTGTGTGGTTTGGTGAGG+GGG | - | chr3_1:87716635-87716654 | None:intergenic | 45.0% |
| TGATAGCATCTGAAGGTCGA+AGG | - | chr3_1:87716733-87716752 | None:intergenic | 45.0% | |
| TCACCTGTGTAAGTTGCATG+TGG | + | chr3_1:87716812-87716831 | Msa0384530:intron | 45.0% | |
| CAGCCAAGTTTCACATTCCT+TGG | + | chr3_1:87716848-87716867 | Msa0384530:intron | 45.0% | |
| TGTATAGGCACCTACAACGT+TGG | - | chr3_1:87716998-87717017 | None:intergenic | 45.0% | |
| !! | ATAATGGGCCATCTGAACCA+GGG | - | chr3_1:87717090-87717109 | None:intergenic | 45.0% |
| !! | AATAATGGGCCATCTGAACC+AGG | - | chr3_1:87717091-87717110 | None:intergenic | 45.0% |
| ! | TGAACTGGATCGGTAGGTTT+TGG | + | chr3_1:87717114-87717133 | Msa0384530:intron | 45.0% |
| AACACACAGTGACACAGGTA+AGG | - | chr3_1:87717447-87717466 | None:intergenic | 45.0% | |
| GAGTAAACACACAGTGACAC+AGG | - | chr3_1:87717452-87717471 | None:intergenic | 45.0% | |
| CACTGTGTGTTTACTCTTGG+AGG | + | chr3_1:87717456-87717475 | Msa0384530:intron | 45.0% | |
| ACTCCAACTCAACCTTCTTC+TGG | + | chr3_1:87717784-87717803 | Msa0384530:intron | 45.0% | |
| AGACCAGAAGAAGGTTGAGT+TGG | - | chr3_1:87717790-87717809 | None:intergenic | 45.0% | |
| ! | TTTGGTTCCGTTTCAGATCG+TGG | + | chr3_1:87717861-87717880 | Msa0384530:intron | 45.0% |
| ! | AGAGTGTCCACGATCTGAAA+CGG | - | chr3_1:87717871-87717890 | None:intergenic | 45.0% |
| ! | ATCCAGCATTGGAATGTCGA+TGG | + | chr3_1:87717906-87717925 | Msa0384530:three_prime_UTR | 45.0% |
| ! | TCCAGCATTGGAATGTCGAT+GGG | + | chr3_1:87717907-87717926 | Msa0384530:three_prime_UTR | 45.0% |
| ! | CAGCAATATGCTGCTTCCAA+TGG | - | chr3_1:87718101-87718120 | None:intergenic | 45.0% |
| GGAAGCAGCATATTGCTGAT+AGG | + | chr3_1:87718103-87718122 | Msa0384530:three_prime_UTR | 45.0% | |
| !!! | ATTTAATTTAATTTAACTAT+TGG | - | chr3_1:87714625-87714644 | None:intergenic | 5.0% |
| !! | ATAAAATGAAATAAATAATT+GGG | - | chr3_1:87715393-87715412 | None:intergenic | 5.0% |
| !! | AATAAAATGAAATAAATAAT+TGG | - | chr3_1:87715394-87715413 | None:intergenic | 5.0% |
| AACTGTAGTGTGTGGGCAAG+AGG | + | chr3_1:87715290-87715309 | Msa0384530:intron | 50.0% | |
| GTCAGCTTAGTGGCGAGAAT+AGG | + | chr3_1:87715314-87715333 | Msa0384530:intron | 50.0% | |
| CAGCTTAGTGGCGAGAATAG+GGG | + | chr3_1:87715316-87715335 | Msa0384530:intron | 50.0% | |
| CTGGCCTCACAAAATCAGTG+AGG | - | chr3_1:87715624-87715643 | None:intergenic | 50.0% | |
| !!! | CTCACTGATTTTGTGAGGCC+AGG | + | chr3_1:87715622-87715641 | Msa0384530:intron | 50.0% |
| GTAGTTGAGGTGAAGAGTGG+AGG | + | chr3_1:87715871-87715890 | Msa0384530:intron | 50.0% | |
| AGGTGAAGAGTGGAGGAGAT+GGG | + | chr3_1:87715878-87715897 | Msa0384530:CDS | 50.0% | |
| GCAGGATGTGGTGCATAATC+CGG | - | chr3_1:87715973-87715992 | None:intergenic | 50.0% | |
| CAACATTGCCGTCAGATGCA+AGG | + | chr3_1:87716751-87716770 | Msa0384530:CDS | 50.0% | |
| AACTGGTCCACCAACGTTGT+AGG | + | chr3_1:87716985-87717004 | Msa0384530:intron | 50.0% | |
| ATAGGCACCTACAACGTTGG+TGG | - | chr3_1:87716995-87717014 | None:intergenic | 50.0% | |
| AAACTGTCAACTCAGTCCCC+TGG | + | chr3_1:87717070-87717089 | Msa0384530:CDS | 50.0% | |
| ! | TAATGGGCCATCTGAACCAG+GGG | - | chr3_1:87717089-87717108 | None:intergenic | 50.0% |
| !! | CTGATGCAACTCTAGCTCTG+TGG | + | chr3_1:87717642-87717661 | Msa0384530:CDS | 50.0% |
| !! | ATGCAACTCTAGCTCTGTGG+AGG | + | chr3_1:87717645-87717664 | Msa0384530:CDS | 50.0% |
| !! | TGCAACTCTAGCTCTGTGGA+GGG | + | chr3_1:87717646-87717665 | Msa0384530:CDS | 50.0% |
| TCCCATCGACATTCCAATGC+TGG | - | chr3_1:87717911-87717930 | None:intergenic | 50.0% | |
| TACACAAGGGGAGAAGCGAA+CGG | - | chr3_1:87717959-87717978 | None:intergenic | 50.0% | |
| !! | GGCAAGAGGTGTCAGCTTAG+TGG | + | chr3_1:87715304-87715323 | Msa0384530:intron | 55.0% |
| CTTAGTGGCGAGAATAGGGG+CGG | + | chr3_1:87715319-87715338 | Msa0384530:intron | 55.0% | |
| AATAGGGGCGGACCTAGACT+AGG | + | chr3_1:87715331-87715350 | Msa0384530:intron | 55.0% | |
| TGGCACTTGCCACACCAGTA+CGG | - | chr3_1:87715358-87715377 | None:intergenic | 55.0% | |
| ATCAAGTTATCGCCCAGGGG+CGG | - | chr3_1:87715649-87715668 | None:intergenic | 55.0% | |
| GAGGTGAAGAGTGGAGGAGA+TGG | + | chr3_1:87715877-87715896 | Msa0384530:CDS | 55.0% | |
| TGCGTCCATAACAGCCCTCA+TGG | + | chr3_1:87715937-87715956 | Msa0384530:CDS | 55.0% | |
| GTCCATAACAGCCCTCATGG+AGG | + | chr3_1:87715940-87715959 | Msa0384530:CDS | 55.0% | |
| GTCCTCCATGAGGGCTGTTA+TGG | - | chr3_1:87715945-87715964 | None:intergenic | 55.0% | |
| CCGGAAGAAGTCCTCCATGA+GGG | - | chr3_1:87715954-87715973 | None:intergenic | 55.0% | |
| CCCTCATGGAGGACTTCTTC+CGG | + | chr3_1:87715951-87715970 | Msa0384530:CDS | 55.0% | |
| TCCGGAAGAAGTCCTCCATG+AGG | - | chr3_1:87715955-87715974 | None:intergenic | 55.0% | |
| ACTCAGTCCCCTGGTTCAGA+TGG | + | chr3_1:87717079-87717098 | Msa0384530:CDS | 55.0% | |
| GACCTAGACTAGGCCCGTAC+TGG | + | chr3_1:87715341-87715360 | Msa0384530:intron | 60.0% | |
| CACCAGTACGGGCCTAGTCT+AGG | - | chr3_1:87715346-87715365 | None:intergenic | 60.0% | |
| ! | AGACTAGGCCCGTACTGGTG+TGG | + | chr3_1:87715346-87715365 | Msa0384530:intron | 60.0% |
| GGCACTTGCCACACCAGTAC+GGG | - | chr3_1:87715357-87715376 | None:intergenic | 60.0% | |
| !! | TCCAGTGGTAATGGTGCGCC+CGG | + | chr3_1:87715477-87715496 | Msa0384530:intron | 60.0% |
| !! | GTGTGGTTTGGTGAGGGGGA+AGG | - | chr3_1:87716631-87716650 | None:intergenic | 60.0% |
| !! | GAAGAGCGCTACCAAGACGC+TGG | + | chr3_1:87717392-87717411 | Msa0384530:CDS | 60.0% |
| TCCGGGCGCACCATTACCAC+TGG | - | chr3_1:87715481-87715500 | None:intergenic | 65.0% | |
| TTATCGCCCAGGGGCGGACC+TGG | - | chr3_1:87715643-87715662 | None:intergenic | 70.0% | |
| TGTGAGGCCAGGTCCGCCCC+TGG | + | chr3_1:87715633-87715652 | Msa0384530:intron | 75.0% | |
| GTGAGGCCAGGTCCGCCCCT+GGG | + | chr3_1:87715634-87715653 | Msa0384530:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 87714460 | 87718230 | 87714460 | ID=Msa0384530;Name=Msa0384530 |
| chr3_1 | mRNA | 87714460 | 87718230 | 87714460 | ID=Msa0384530-mRNA-1;Parent=Msa0384530;Name=Msa0384530-mRNA-1;_AED=0.18;_eAED=0.18;_QI=221|0.8|0.81|1|0.6|0.63|11|338|330 |
| chr3_1 | exon | 87714460 | 87714674 | 87714460 | ID=Msa0384530-mRNA-1:exon:23556;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87714754 | 87715036 | 87714754 | ID=Msa0384530-mRNA-1:exon:23557;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87715875 | 87716021 | 87715875 | ID=Msa0384530-mRNA-1:exon:23558;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87716194 | 87716243 | 87716194 | ID=Msa0384530-mRNA-1:exon:23559;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87716369 | 87716425 | 87716369 | ID=Msa0384530-mRNA-1:exon:23560;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87716546 | 87716611 | 87716546 | ID=Msa0384530-mRNA-1:exon:23561;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87716698 | 87716772 | 87716698 | ID=Msa0384530-mRNA-1:exon:23562;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87717007 | 87717125 | 87717007 | ID=Msa0384530-mRNA-1:exon:23563;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87717322 | 87717413 | 87717322 | ID=Msa0384530-mRNA-1:exon:23564;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87717618 | 87717711 | 87717618 | ID=Msa0384530-mRNA-1:exon:23565;Parent=Msa0384530-mRNA-1 |
| chr3_1 | exon | 87717877 | 87718230 | 87717877 | ID=Msa0384530-mRNA-1:exon:23566;Parent=Msa0384530-mRNA-1 |
| chr3_1 | five_prime_UTR | 87714460 | 87714674 | 87714460 | ID=Msa0384530-mRNA-1:five_prime_utr;Parent=Msa0384530-mRNA-1 |
| chr3_1 | five_prime_UTR | 87714754 | 87714759 | 87714754 | ID=Msa0384530-mRNA-1:five_prime_utr;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87714760 | 87715036 | 87714760 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87715875 | 87716021 | 87715875 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87716194 | 87716243 | 87716194 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87716369 | 87716425 | 87716369 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87716546 | 87716611 | 87716546 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87716698 | 87716772 | 87716698 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87717007 | 87717125 | 87717007 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87717322 | 87717413 | 87717322 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87717618 | 87717711 | 87717618 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | CDS | 87717877 | 87717892 | 87717877 | ID=Msa0384530-mRNA-1:cds;Parent=Msa0384530-mRNA-1 |
| chr3_1 | three_prime_UTR | 87717893 | 87718230 | 87717893 | ID=Msa0384530-mRNA-1:three_prime_utr;Parent=Msa0384530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
