Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463560 | XP_003602823.2 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463560 | sp|P46266|1433_PEA | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463560 | G7J3X9 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa1463560 | -0.800464 | 1.423528e-48 | -8.615850e-47 |
| Msa0041000 | Msa1463560 | -0.803347 | 3.639878e-49 | -8.615850e-47 |
| Msa0049330 | Msa1463560 | -0.811937 | 5.453071e-51 | -8.615850e-47 |
| Msa0053960 | Msa1463560 | -0.803900 | 2.795493e-49 | -8.615850e-47 |
| Msa0091000 | Msa1463560 | -0.803816 | 2.910553e-49 | -8.615850e-47 |
| Msa0094940 | Msa1463560 | 0.811569 | 6.557236e-51 | -8.615850e-47 |
| Msa0104360 | Msa1463560 | -0.808100 | 3.656567e-50 | -8.615850e-47 |
| Msa0108070 | Msa1463560 | -0.807337 | 5.309331e-50 | -8.615850e-47 |
| Msa0116510 | Msa1463560 | -0.808247 | 3.401959e-50 | -8.615850e-47 |
| Msa1386250 | Msa1463560 | -0.823231 | 1.547888e-53 | -8.615850e-47 |
| Msa1398870 | Msa1463560 | 0.804758 | 1.852599e-49 | -8.615850e-47 |
| Msa1424510 | Msa1463560 | -0.821476 | 3.956763e-53 | -8.615850e-47 |
| Msa1427810 | Msa1463560 | -0.861010 | 1.385181e-63 | -8.615850e-47 |
| Msa1441200 | Msa1463560 | -0.866204 | 3.381455e-65 | -8.615850e-47 |
| Msa1460310 | Msa1463560 | 0.826247 | 3.012996e-54 | -8.615850e-47 |
| Msa0610780 | Msa1463560 | -0.803980 | 2.691069e-49 | -8.615850e-47 |
| Msa0610810 | Msa1463560 | -0.820933 | 5.279981e-53 | -8.615850e-47 |
| Msa0675010 | Msa1463560 | -0.822607 | 2.164185e-53 | -8.615850e-47 |
| Msa0709660 | Msa1463560 | -0.808333 | 3.260456e-50 | -8.615850e-47 |
| Msa0732080 | Msa1463560 | 0.801636 | 8.201420e-49 | -8.615850e-47 |
| Msa0744490 | Msa1463560 | -0.808147 | 3.572762e-50 | -8.615850e-47 |
| Msa0744500 | Msa1463560 | -0.831153 | 1.961385e-55 | -8.615850e-47 |
| Msa0749150 | Msa1463560 | -0.843248 | 1.574463e-58 | -8.615850e-47 |
| Msa0775580 | Msa1463560 | -0.820325 | 7.280500e-53 | -8.615850e-47 |
| Msa0788360 | Msa1463560 | -0.830969 | 2.176104e-55 | -8.615850e-47 |
| Msa0792880 | Msa1463560 | -0.856037 | 4.218505e-62 | -8.615850e-47 |
| Msa0803530 | Msa1463560 | -0.803557 | 3.293345e-49 | -8.615850e-47 |
| Msa0810350 | Msa1463560 | 0.849868 | 2.453208e-60 | -8.615850e-47 |
| Msa0812970 | Msa1463560 | -0.802743 | 4.853527e-49 | -8.615850e-47 |
| Msa0813030 | Msa1463560 | -0.817861 | 2.647261e-52 | -8.615850e-47 |
| Msa0826650 | Msa1463560 | -0.835282 | 1.837452e-56 | -8.615850e-47 |
| Msa0828570 | Msa1463560 | -0.802540 | 5.345438e-49 | -8.615850e-47 |
| Msa0828900 | Msa1463560 | -0.856392 | 3.319454e-62 | -8.615850e-47 |
| Msa0135590 | Msa1463560 | -0.830400 | 3.000267e-55 | -8.615850e-47 |
| Msa0143280 | Msa1463560 | -0.803381 | 3.581847e-49 | -8.615850e-47 |
| Msa0153440 | Msa1463560 | -0.811583 | 6.511123e-51 | -8.615850e-47 |
| Msa0154240 | Msa1463560 | -0.800906 | 1.156658e-48 | -8.615850e-47 |
| Msa0198440 | Msa1463560 | -0.803295 | 3.731174e-49 | -8.615850e-47 |
| Msa0226620 | Msa1463560 | 0.816381 | 5.694091e-52 | -8.615850e-47 |
| Msa1237260 | Msa1463560 | -0.812529 | 4.049986e-51 | -8.615850e-47 |
| Msa1252300 | Msa1463560 | -0.828964 | 6.706013e-55 | -8.615850e-47 |
| Msa1279330 | Msa1463560 | -0.806720 | 7.172535e-50 | -8.615850e-47 |
| Msa1340530 | Msa1463560 | -0.821439 | 4.034901e-53 | -8.615850e-47 |
| Msa0379340 | Msa1463560 | 0.988824 | 1.477557e-175 | -8.615850e-47 |
| Msa0384530 | Msa1463560 | -0.814351 | 1.610377e-51 | -8.615850e-47 |
| Msa0389060 | Msa1463560 | -0.806055 | 9.905061e-50 | -8.615850e-47 |
| Msa0404690 | Msa1463560 | -0.807483 | 4.944251e-50 | -8.615850e-47 |
| Msa0405250 | Msa1463560 | 0.818981 | 1.475997e-52 | -8.615850e-47 |
| Msa0428850 | Msa1463560 | 0.986301 | 2.475616e-166 | -8.615850e-47 |
| Msa0437330 | Msa1463560 | -0.863616 | 2.191554e-64 | -8.615850e-47 |
| Msa0479030 | Msa1463560 | -0.839980 | 1.145371e-57 | -8.615850e-47 |
| Msa0479950 | Msa1463560 | -0.804073 | 2.573795e-49 | -8.615850e-47 |
| Msa1009170 | Msa1463560 | -0.802079 | 6.650871e-49 | -8.615850e-47 |
| Msa1041160 | Msa1463560 | 0.802557 | 5.300878e-49 | -8.615850e-47 |
| Msa0245870 | Msa1463560 | -0.844038 | 9.681884e-59 | -8.615850e-47 |
| Msa0264940 | Msa1463560 | 0.822772 | 1.981138e-53 | -8.615850e-47 |
| Msa0265980 | Msa1463560 | 0.802264 | 6.092634e-49 | -8.615850e-47 |
| Msa0278670 | Msa1463560 | -0.805623 | 1.220792e-49 | -8.615850e-47 |
| Msa0302990 | Msa1463560 | 0.825862 | 3.717990e-54 | -8.615850e-47 |
| Msa0308570 | Msa1463560 | -0.814236 | 1.707081e-51 | -8.615850e-47 |
| Msa1108540 | Msa1463560 | 0.801040 | 1.086227e-48 | -8.615850e-47 |
| Msa1125450 | Msa1463560 | -0.817536 | 3.133855e-52 | -8.615850e-47 |
| Msa1127910 | Msa1463560 | 0.820657 | 6.108835e-53 | -8.615850e-47 |
| Msa1130350 | Msa1463560 | -0.858753 | 6.632766e-63 | -8.615850e-47 |
| Msa1130630 | Msa1463560 | -0.867178 | 1.657476e-65 | -8.615850e-47 |
| Msa1138450 | Msa1463560 | -0.813835 | 2.092788e-51 | -8.615850e-47 |
| Msa1138480 | Msa1463560 | -0.803028 | 4.238204e-49 | -8.615850e-47 |
| Msa1141250 | Msa1463560 | 0.803187 | 3.928863e-49 | -8.615850e-47 |
| Msa1164570 | Msa1463560 | -0.801758 | 7.742383e-49 | -8.615850e-47 |
| Msa1165820 | Msa1463560 | 0.804314 | 2.292140e-49 | -8.615850e-47 |
| Msa1173380 | Msa1463560 | -0.803222 | 3.864293e-49 | -8.615850e-47 |
| Msa1178120 | Msa1463560 | -0.827744 | 1.320754e-54 | -8.615850e-47 |
| Msa1182800 | Msa1463560 | -0.812936 | 3.298366e-51 | -8.615850e-47 |
| Msa1182830 | Msa1463560 | -0.821950 | 3.073605e-53 | -8.615850e-47 |
| Msa1203360 | Msa1463560 | -0.803204 | 3.898330e-49 | -8.615850e-47 |
| Msa1206760 | Msa1463560 | -0.801351 | 9.383221e-49 | -8.615850e-47 |
| Msa0569360 | Msa1463560 | -0.811794 | 5.858242e-51 | -8.615850e-47 |
| Msa0570680 | Msa1463560 | -0.817308 | 3.527877e-52 | -8.615850e-47 |
| Msa0589610 | Msa1463560 | -0.830746 | 2.469028e-55 | -8.615850e-47 |
| Msa0853500 | Msa1463560 | -0.818337 | 2.066673e-52 | -8.615850e-47 |
| Msa0864690 | Msa1463560 | -0.834750 | 2.501498e-56 | -8.615850e-47 |
| Msa0883350 | Msa1463560 | -0.832696 | 8.155803e-56 | -8.615850e-47 |
| Msa0884620 | Msa1463560 | -0.829971 | 3.818645e-55 | -8.615850e-47 |
| Msa0903000 | Msa1463560 | -0.802002 | 6.897468e-49 | -8.615850e-47 |
| Msa0906360 | Msa1463560 | -0.813006 | 3.184485e-51 | -8.615850e-47 |
| Msa0911910 | Msa1463560 | -0.813647 | 2.302938e-51 | -8.615850e-47 |
| Msa0938420 | Msa1463560 | -0.820234 | 7.639309e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463560 | MtrunA17_Chr3g0132301 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Msa1463560 | MtrunA17_Chr5g0426551 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 3.85e-177 | 488 |
| Msa1463560 | MtrunA17_Chr3g0133161 | 76.793 | 237 | 54 | 1 | 8 | 243 | 11 | 247 | 1.18e-135 | 382 |
| Msa1463560 | MtrunA17_Chr2g0325591 | 72.840 | 243 | 64 | 2 | 3 | 245 | 2 | 242 | 5.64e-129 | 365 |
| Msa1463560 | MtrunA17_Chr5g0418971 | 71.951 | 246 | 67 | 2 | 3 | 248 | 2 | 245 | 1.28e-126 | 360 |
| Msa1463560 | MtrunA17_Chr8g0379011 | 71.721 | 244 | 67 | 2 | 3 | 246 | 2 | 243 | 3.10e-125 | 355 |
| Msa1463560 | MtrunA17_Chr2g0283791 | 69.444 | 252 | 73 | 3 | 6 | 256 | 3 | 251 | 3.29e-124 | 353 |
| Msa1463560 | MtrunA17_Chr2g0316011 | 66.275 | 255 | 84 | 1 | 1 | 255 | 1 | 253 | 6.35e-122 | 348 |
| Msa1463560 | MtrunA17_Chr4g0043141 | 64.017 | 239 | 65 | 2 | 27 | 246 | 1 | 237 | 5.38e-107 | 309 |
| Msa1463560 | MtrunA17_Chr1g0164601 | 59.574 | 235 | 89 | 4 | 8 | 240 | 11 | 241 | 1.45e-90 | 268 |
| Msa1463560 | MtrunA17_Chr3g0082111 | 59.149 | 235 | 90 | 4 | 8 | 240 | 41 | 271 | 2.59e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463560 | AT1G78300.1 | 91.797 | 256 | 20 | 1 | 6 | 260 | 3 | 258 | 6.68e-173 | 477 |
| Msa1463560 | AT1G35160.1 | 87.259 | 259 | 32 | 1 | 3 | 260 | 6 | 264 | 1.67e-167 | 464 |
| Msa1463560 | AT4G09000.1 | 86.260 | 262 | 32 | 1 | 3 | 260 | 5 | 266 | 1.64e-164 | 456 |
| Msa1463560 | AT1G35160.2 | 78.746 | 287 | 32 | 2 | 3 | 260 | 6 | 292 | 2.20e-161 | 449 |
| Msa1463560 | AT5G38480.1 | 86.111 | 252 | 34 | 1 | 6 | 257 | 2 | 252 | 1.18e-160 | 446 |
| Msa1463560 | AT3G02520.1 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.97e-159 | 441 |
| Msa1463560 | AT3G02520.2 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.97e-159 | 441 |
| Msa1463560 | AT5G38480.3 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.51e-158 | 440 |
| Msa1463560 | AT5G38480.2 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.51e-158 | 440 |
| Msa1463560 | AT4G09000.2 | 88.750 | 240 | 27 | 0 | 3 | 242 | 5 | 244 | 3.83e-158 | 442 |
| Msa1463560 | AT5G16050.1 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.60e-150 | 419 |
| Msa1463560 | AT5G16050.2 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.60e-150 | 419 |
| Msa1463560 | AT5G10450.2 | 78.776 | 245 | 51 | 1 | 3 | 246 | 2 | 246 | 4.52e-143 | 401 |
| Msa1463560 | AT5G10450.4 | 76.800 | 250 | 57 | 1 | 3 | 251 | 2 | 251 | 1.25e-142 | 401 |
| Msa1463560 | AT5G10450.1 | 78.926 | 242 | 50 | 1 | 3 | 243 | 2 | 243 | 1.57e-142 | 400 |
| Msa1463560 | AT5G10450.3 | 79.253 | 241 | 49 | 1 | 3 | 242 | 2 | 242 | 6.55e-142 | 399 |
| Msa1463560 | AT5G65430.2 | 79.167 | 240 | 49 | 1 | 8 | 246 | 7 | 246 | 6.91e-141 | 395 |
| Msa1463560 | AT5G65430.1 | 79.325 | 237 | 48 | 1 | 8 | 243 | 7 | 243 | 1.74e-140 | 395 |
| Msa1463560 | AT5G65430.3 | 79.661 | 236 | 47 | 1 | 8 | 242 | 7 | 242 | 6.21e-140 | 394 |
| Msa1463560 | AT1G26480.1 | 72.222 | 252 | 67 | 2 | 8 | 258 | 10 | 259 | 1.20e-129 | 368 |
| Msa1463560 | AT1G34760.1 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 3.52e-122 | 348 |
| Msa1463560 | AT1G34760.2 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 5.02e-122 | 348 |
| Msa1463560 | AT2G42590.1 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.32e-121 | 347 |
| Msa1463560 | AT2G42590.3 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.35e-121 | 348 |
| Msa1463560 | AT2G42590.2 | 69.200 | 250 | 74 | 2 | 8 | 256 | 7 | 254 | 4.14e-121 | 346 |
| Msa1463560 | AT1G22300.1 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 5.60e-116 | 333 |
| Msa1463560 | AT1G22300.2 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 6.81e-116 | 333 |
| Msa1463560 | AT1G22300.3 | 69.038 | 239 | 72 | 2 | 8 | 246 | 5 | 241 | 1.13e-114 | 329 |
| Msa1463560 | AT1G78220.1 | 48.069 | 233 | 118 | 2 | 8 | 239 | 5 | 235 | 1.23e-70 | 217 |
| Msa1463560 | AT1G22290.2 | 45.238 | 210 | 93 | 5 | 11 | 217 | 8 | 198 | 9.87e-48 | 158 |
| Msa1463560 | AT1G22290.1 | 44.928 | 207 | 92 | 5 | 11 | 214 | 8 | 195 | 1.98e-47 | 156 |
| Msa1463560 | AT2G10450.1 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 4.48e-18 | 77.0 |
Find 96 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTGTTGCCAATCTCTT+TGG | 0.214735 | tig0043397:+5210 | Msa1463560:three_prime_UTR |
| AAACTTGATCTCGCCGAATT+TGG | 0.226216 | tig0043397:+5399 | Msa1463560:three_prime_UTR |
| AGAGCAAGACCCAGCCTAAT+TGG | 0.274942 | tig0043397:-3998 | Msa1463560:intergenic |
| TTCATGTCTGTTATGAGTTC+TGG | 0.280155 | tig0043397:+5251 | Msa1463560:three_prime_UTR |
| GACGGTGAGTTCTTCGTTAT+CGG | 0.280595 | tig0043397:-3269 | Msa1463560:intergenic |
| TGCTTGTTGCCAATCTCTTT+GGG | 0.288401 | tig0043397:+5211 | Msa1463560:three_prime_UTR |
| AGGAGAAGTTTGATCCTAAT+TGG | 0.291226 | tig0043397:-5160 | Msa1463560:intergenic |
| CTCATTCCTTCCGCTGCTTC+CGG | 0.316176 | tig0043397:+3496 | Msa1463560:CDS |
| TAATATCCGCTCACCAAATT+CGG | 0.339022 | tig0043397:-5412 | Msa1463560:intergenic |
| TGATGAAGCAATTGCTGAAC+TGG | 0.341177 | tig0043397:+4883 | Msa1463560:CDS |
| TTCAGTGTCCTCAAGAAAAT+AGG | 0.346803 | tig0043397:-5330 | Msa1463560:intergenic |
| TACTGCTGTTCATCGGGTTT+AGG | 0.348488 | tig0043397:-5123 | Msa1463560:intergenic |
| CGAAGAAATGGTGGAGTTCA+TGG | 0.350821 | tig0043397:+3228 | Msa1463560:CDS |
| AACCTGTTTAGCAAGATTGC+AGG | 0.360144 | tig0043397:-4068 | Msa1463560:intergenic |
| CTTCATTCATTAACATATAG+AGG | 0.370439 | tig0043397:-5180 | Msa1463560:intergenic |
| GTTATGAGTTCTGGATGTCC+TGG | 0.372021 | tig0043397:+5260 | Msa1463560:three_prime_UTR |
| CACCATTTCTTCGTAGCGTT+CGG | 0.376229 | tig0043397:-3218 | Msa1463560:intergenic |
| TGCTCCGATGACGTTCTTGT+AGG | 0.378815 | tig0043397:-3317 | Msa1463560:intergenic |
| TTCGTAGCGTTCGGCTTGTT+CGG | 0.387733 | tig0043397:-3209 | Msa1463560:intergenic |
| TGCCTGCAATCTTGCTAAAC+AGG | 0.391731 | tig0043397:+4066 | Msa1463560:CDS |
| GGTAATCTCCCTTCATCTTA+AGG | 0.395416 | tig0043397:-3537 | Msa1463560:intergenic |
| CGCTGCTTCCGGTGATTCCA+AGG | 0.396427 | tig0043397:+3507 | Msa1463560:CDS |
| TTTGTTTGGTTTCAGGATGA+TGG | 0.406229 | tig0043397:+5075 | Msa1463560:intron |
| AGCCGAACGCTACGAAGAAA+TGG | 0.413922 | tig0043397:+3216 | Msa1463560:CDS |
| TTTGTTTACTGCTGTTCATC+GGG | 0.421726 | tig0043397:-5129 | Msa1463560:intergenic |
| TGCCACCAACTCATCCAATT+AGG | 0.435904 | tig0043397:+3984 | Msa1463560:CDS |
| GCAAGATTGCAGGCACGATC+AGG | 0.442951 | tig0043397:-4058 | Msa1463560:intergenic |
| ATTATCACTTGTTATATTTG+AGG | 0.443079 | tig0043397:+5478 | Msa1463560:three_prime_UTR |
| TTATCACTTGTTATATTTGA+GGG | 0.443479 | tig0043397:+5479 | Msa1463560:three_prime_UTR |
| AGCTGCTTCTTTAATTTCAT+CGG | 0.448476 | tig0043397:-5100 | Msa1463560:intergenic |
| ATCTCAGCACCCAAAGAGAT+TGG | 0.450182 | tig0043397:-5220 | Msa1463560:intergenic |
| TTCTTCGTTATCGGCGTTGG+CGG | 0.458530 | tig0043397:-3260 | Msa1463560:intergenic |
| ACCAACTCATCCAATTAGGC+TGG | 0.462152 | tig0043397:+3988 | Msa1463560:CDS |
| CTCAGCAGCCTCCTTACGCT+CGG | 0.471405 | tig0043397:-3590 | Msa1463560:intergenic |
| CTCTATATGTTAATGAATGA+AGG | 0.471694 | tig0043397:+5181 | Msa1463560:three_prime_UTR |
| CCTGCATGTCAGAGGTCCAT+AGG | 0.480592 | tig0043397:-4973 | Msa1463560:intergenic |
| ATTTGTTTACTGCTGTTCAT+CGG | 0.482074 | tig0043397:-5130 | Msa1463560:intergenic |
| TAGAGAGAGAAAGTGAGATC+TGG | 0.484019 | tig0043397:-3124 | Msa1463560:intergenic |
| ATGGGTCATGAACTCGTGGT+AGG | 0.488348 | tig0043397:+5446 | Msa1463560:three_prime_UTR |
| TCGGAGCACGACGTGCTTCG+TGG | 0.495843 | tig0043397:+3332 | Msa1463560:CDS |
| CCCAGCCTAATTGGATGAGT+TGG | 0.496782 | tig0043397:-3989 | Msa1463560:intergenic |
| CGCCGCTTACAAATCTGCTC+AGG | 0.501140 | tig0043397:+3621 | Msa1463560:CDS |
| CATCTTAAGGTAGAAAACCT+TGG | 0.502188 | tig0043397:-3524 | Msa1463560:intergenic |
| GGCGGCCGCTCATTCACCTC+GGG | 0.502842 | tig0043397:+3159 | Msa1463560:CDS |
| CAAGACTGGCGCCGAGCGTA+AGG | 0.509038 | tig0043397:+3579 | Msa1463560:CDS |
| TTCCTCGATCGAACAGAAAG+AGG | 0.515919 | tig0043397:+3363 | Msa1463560:CDS |
| GAGTTCTTCGTTATCGGCGT+TGG | 0.515957 | tig0043397:-3263 | Msa1463560:intergenic |
| AGCCTAATTGGATGAGTTGG+TGG | 0.523887 | tig0043397:-3986 | Msa1463560:intergenic |
| TTCGTGATAATCTCACCCTA+TGG | 0.525895 | tig0043397:+4957 | Msa1463560:CDS |
| TTATGAGTTCTGGATGTCCT+GGG | 0.527707 | tig0043397:+5261 | Msa1463560:three_prime_UTR |
| GTAGAAAACCTTGGAATCAC+CGG | 0.533118 | tig0043397:-3515 | Msa1463560:intergenic |
| CCTATGGACCTCTGACATGC+AGG | 0.534557 | tig0043397:+4973 | Msa1463560:CDS |
| AGATCGGTAGTCACGGATGA+CGG | 0.545474 | tig0043397:-3413 | Msa1463560:intergenic |
| TGTTAATGAATGAAGGAAGA+AGG | 0.545599 | tig0043397:+5188 | Msa1463560:three_prime_UTR |
| CTGCATGTCAGAGGTCCATA+GGG | 0.549120 | tig0043397:-4972 | Msa1463560:intergenic |
| AGCAGCGGAAGGAATGAGAC+GGG | 0.550202 | tig0043397:-3491 | Msa1463560:intergenic |
| TGAACTCAGCAAGATACCTA+TGG | 0.552878 | tig0043397:-3558 | Msa1463560:intergenic |
| TGGGTCATGAACTCGTGGTA+GGG | 0.555219 | tig0043397:+5447 | Msa1463560:three_prime_UTR |
| CTCCTCTTTCTGTTCGATCG+AGG | 0.555820 | tig0043397:-3365 | Msa1463560:intergenic |
| AAGAACTCACCGTCGAAGAG+AGG | 0.556409 | tig0043397:+3278 | Msa1463560:CDS |
| TATCTTGCTGAGTTCAAGAC+TGG | 0.559984 | tig0043397:+3565 | Msa1463560:CDS |
| CTACCGATCTAAGATCGAAT+CGG | 0.562157 | tig0043397:+3426 | Msa1463560:CDS |
| ATAGAAAATGATGAGGAAGA+CGG | 0.571147 | tig0043397:-3052 | Msa1463560:intergenic |
| CCTTGGCGAGGAATCATACA+AGG | 0.572604 | tig0043397:+4910 | Msa1463560:CDS |
| TCGGGAAGAGAACGTTTACA+TGG | 0.578574 | tig0043397:+3177 | Msa1463560:CDS |
| GTAGCCTACAAGAACGTCAT+CGG | 0.580177 | tig0043397:+3313 | Msa1463560:CDS |
| ATTGCTGAACTGGATACCCT+TGG | 0.584167 | tig0043397:+4893 | Msa1463560:CDS |
| CTTGTATGATTCCTCGCCAA+GGG | 0.586259 | tig0043397:-4909 | Msa1463560:intergenic |
| CCAACTCATCCAATTAGGCT+GGG | 0.587390 | tig0043397:+3989 | Msa1463560:CDS |
| TGGCGGCCGCTCATTCACCT+CGG | 0.588265 | tig0043397:+3158 | Msa1463560:CDS |
| CTTGGAATCACCGGAAGCAG+CGG | 0.589029 | tig0043397:-3506 | Msa1463560:intergenic |
| CTCTCTCTAGAATTCAACAA+TGG | 0.589732 | tig0043397:+3138 | Msa1463560:exon |
| GAGAGAAATAGAAAATGATG+AGG | 0.593628 | tig0043397:-3059 | Msa1463560:intergenic |
| AAGCAGCGGAAGGAATGAGA+CGG | 0.594104 | tig0043397:-3492 | Msa1463560:intergenic |
| GACTGGCGCCGAGCGTAAGG+AGG | 0.597871 | tig0043397:+3582 | Msa1463560:CDS |
| CCTTGTATGATTCCTCGCCA+AGG | 0.605796 | tig0043397:-4910 | Msa1463560:intergenic |
| AAACGTGATCCTCGTTGCCG+CGG | 0.607870 | tig0043397:-3390 | Msa1463560:intergenic |
| AGATGAAGGGAGATTACCAT+AGG | 0.607967 | tig0043397:+3542 | Msa1463560:CDS |
| GAGAAGGTTCCTCTCTTCGA+CGG | 0.608781 | tig0043397:-3287 | Msa1463560:intergenic |
| GTTATATTTGAGGGAACTCG+TGG | 0.620508 | tig0043397:+5488 | Msa1463560:three_prime_UTR |
| TCTTGTAGGCTACAGAGAGA+AGG | 0.628236 | tig0043397:-3303 | Msa1463560:intergenic |
| GAATCACCGGAAGCAGCGGA+AGG | 0.629660 | tig0043397:-3502 | Msa1463560:intergenic |
| AGGACAAACTAAAACAGCCC+AGG | 0.629679 | tig0043397:-5278 | Msa1463560:intergenic |
| AATCAATACCTGCATGTCAG+AGG | 0.637050 | tig0043397:-4981 | Msa1463560:intergenic |
| ATGTAAACGTTCTCTTCCCG+AGG | 0.637688 | tig0043397:-3175 | Msa1463560:intergenic |
| GCTCCGATTCGATCTTAGAT+CGG | 0.641337 | tig0043397:-3429 | Msa1463560:intergenic |
| CGATCTTAGATCGGTAGTCA+CGG | 0.645752 | tig0043397:-3420 | Msa1463560:intergenic |
| CTCTTCCCGAGGTGAATGAG+CGG | 0.645933 | tig0043397:-3164 | Msa1463560:intergenic |
| AGAGGAGAGCCGCGGCAACG+AGG | 0.653525 | tig0043397:+3381 | Msa1463560:CDS |
| ATCTCGCCGAATTTGGTGAG+CGG | 0.654329 | tig0043397:+5406 | Msa1463560:three_prime_UTR |
| GAGCTTTCTAACATCTGTGA+CGG | 0.658608 | tig0043397:+3448 | Msa1463560:CDS |
| TCTCTAGAATTCAACAATGG+CGG | 0.659956 | tig0043397:+3141 | Msa1463560:exon |
| GAACAGAAAGAGGAGAGCCG+CGG | 0.660532 | tig0043397:+3373 | Msa1463560:CDS |
| AACCTGAGCAGATTTGTAAG+CGG | 0.663795 | tig0043397:-3623 | Msa1463560:intergenic |
| TGAACTGGATACCCTTGGCG+AGG | 0.679766 | tig0043397:+4898 | Msa1463560:CDS |
| CGAACGCTACGAAGAAATGG+TGG | 0.680192 | tig0043397:+3219 | Msa1463560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTAGTTTTTTTTTTAT+GGG | + | tig0043397:5428-5447 | Msa1463560:three_prime_UTR | 10.0% |
| !! | TACTTTGTATATGAAATATA+TGG | + | tig0043397:3880-3899 | Msa1463560:intron | 15.0% |
| !!! | GTTATTTTGTAGTTATTTTA+AGG | + | tig0043397:4129-4148 | Msa1463560:intron | 15.0% |
| !! | CATTTCAAAATGAAATTTAA+AGG | - | tig0043397:4751-4770 | Msa1463560:intergenic | 15.0% |
| !! | AGAAGAAAACAAAAATATAT+GGG | - | tig0043397:5030-5049 | Msa1463560:intergenic | 15.0% |
| !! | ATTTGTAAAACACTTAAAAA+TGG | - | tig0043397:5305-5324 | Msa1463560:intergenic | 15.0% |
| !!! | GGATATTAGTTTTTTTTTTA+TGG | + | tig0043397:5427-5446 | Msa1463560:three_prime_UTR | 15.0% |
| !!! | TTTTTAGGTTTTTTAATTGT+TGG | + | tig0043397:5540-5559 | Msa1463560:three_prime_UTR | 15.0% |
| !! | AAACAACAAAAAGGAAAAAA+CGG | - | tig0043397:3651-3670 | Msa1463560:intergenic | 20.0% |
| !! | AATAAGATGTATATCCAAAA+AGG | - | tig0043397:4155-4174 | Msa1463560:intergenic | 20.0% |
| !! | AATAATAAGGATACCAAAAA+AGG | - | tig0043397:4533-4552 | Msa1463560:intergenic | 20.0% |
| !! | TTTAAAGGAATAAATTCCAT+GGG | - | tig0043397:4736-4755 | Msa1463560:intergenic | 20.0% |
| !! | ATTTAAAGGAATAAATTCCA+TGG | - | tig0043397:4737-4756 | Msa1463560:intergenic | 20.0% |
| !!! | CTCATGAATATTTTTTTGTT+TGG | + | tig0043397:4845-4864 | Msa1463560:intron | 20.0% |
| !! | GAGAAGAAAACAAAAATATA+TGG | - | tig0043397:5031-5050 | Msa1463560:intergenic | 20.0% |
| !!! | TTTAATCAATGTATTGATCT+TGG | + | tig0043397:5052-5071 | Msa1463560:intron | 20.0% |
| !!! | GAAGTTTTATTATATGGAAT+TGG | + | tig0043397:5350-5369 | Msa1463560:three_prime_UTR | 20.0% |
| !!! | ATTATCACTTGTTATATTTG+AGG | + | tig0043397:5478-5497 | Msa1463560:three_prime_UTR | 20.0% |
| !!! | TTATCACTTGTTATATTTGA+GGG | + | tig0043397:5479-5498 | Msa1463560:three_prime_UTR | 20.0% |
| ! | CAAAATCGAAAACAACAAAA+AGG | - | tig0043397:3660-3679 | Msa1463560:intergenic | 25.0% |
| !! | TTTTGTGATTCAAATCTGTT+AGG | + | tig0043397:3675-3694 | Msa1463560:intron | 25.0% |
| !! | GCAATATTTTTCACAATCTT+TGG | + | tig0043397:3842-3861 | Msa1463560:intron | 25.0% |
| !! | TGAAATATATGGAGTATTTG+TGG | + | tig0043397:3891-3910 | Msa1463560:intron | 25.0% |
| !!! | TAGTTATTTTAAGGCCTTTT+TGG | + | tig0043397:4138-4157 | Msa1463560:intron | 25.0% |
| ! | CTTATTTCCATTACTTCAAT+AGG | - | tig0043397:4245-4264 | Msa1463560:intergenic | 25.0% |
| !! | CTGAAAACATTTTATGAACA+TGG | + | tig0043397:4265-4284 | Msa1463560:intron | 25.0% |
| ! | TTGGATATTTGTGTAGAAAT+TGG | + | tig0043397:4368-4387 | Msa1463560:intron | 25.0% |
| !! | AATACTTGACAACTCATTTT+AGG | - | tig0043397:4572-4591 | Msa1463560:intergenic | 25.0% |
| !! | AGTTGTCAAGTATTGTTTAT+TGG | + | tig0043397:4578-4597 | Msa1463560:intron | 25.0% |
| !! | AGTAGTACCTAATGTTATTT+GGG | - | tig0043397:4704-4723 | Msa1463560:intergenic | 25.0% |
| ! | TTAAAGGAATAAATTCCATG+GGG | - | tig0043397:4735-4754 | Msa1463560:intergenic | 25.0% |
| !!! | ATGAGTTTTTTCTGTTCTAA+TGG | + | tig0043397:4806-4825 | Msa1463560:intron | 25.0% |
| !!! | TTTTTTGTTTGGTAATCACT+AGG | + | tig0043397:4856-4875 | Msa1463560:intron | 25.0% |
| !! | AACAAATTTTACTGCCAATT+AGG | + | tig0043397:5146-5165 | Msa1463560:exon | 25.0% |
| ! | CTTCATTCATTAACATATAG+AGG | - | tig0043397:5183-5202 | Msa1463560:intergenic | 25.0% |
| ! | CTCTATATGTTAATGAATGA+AGG | + | tig0043397:5181-5200 | Msa1463560:three_prime_UTR | 25.0% |
| ! | GTAAAACACTTAAAAATGGA+AGG | - | tig0043397:5301-5320 | Msa1463560:intergenic | 25.0% |
| !! | AATTATTGCCTATTTTCTTG+AGG | + | tig0043397:5322-5341 | Msa1463560:three_prime_UTR | 25.0% |
| !!! | GACACTGAAGTTTTATTATA+TGG | + | tig0043397:5344-5363 | Msa1463560:three_prime_UTR | 25.0% |
| GAGAGAAATAGAAAATGATG+AGG | - | tig0043397:3062-3081 | Msa0403840:intergenic | 30.0% | |
| ! | GTTTTCTACCTTAAGATGAA+GGG | + | tig0043397:3529-3548 | Msa1463560:CDS | 30.0% |
| TTTGTGGATCTGTAATTGAA+AGG | + | tig0043397:3907-3926 | Msa1463560:intron | 30.0% | |
| TGTAATTGAAAGGTTTGTGA+TGG | + | tig0043397:3917-3936 | Msa1463560:intron | 30.0% | |
| !!! | AATGTGTTCCTTTGTTTTAC+AGG | + | tig0043397:3943-3962 | Msa1463560:intron | 30.0% |
| ACTTCAATAGGAAAACAGTT+TGG | - | tig0043397:4233-4252 | Msa1463560:intergenic | 30.0% | |
| ! | CTGTTTTCCTATTGAAGTAA+TGG | + | tig0043397:4235-4254 | Msa1463560:intron | 30.0% |
| ACTCTGATCAAATAGTGTAA+GGG | - | tig0043397:4347-4366 | Msa1463560:intergenic | 30.0% | |
| AACTCTGATCAAATAGTGTA+AGG | - | tig0043397:4348-4367 | Msa1463560:intergenic | 30.0% | |
| ! | ACACTATTTGATCAGAGTTT+TGG | + | tig0043397:4349-4368 | Msa1463560:intron | 30.0% |
| AATAAGGATACCAAAAAAGG+AGG | - | tig0043397:4530-4549 | Msa1463560:intergenic | 30.0% | |
| ! | TGTCAAGTATTGTTTATTGG+TGG | + | tig0043397:4581-4600 | Msa1463560:intron | 30.0% |
| GAGTAGTACCTAATGTTATT+TGG | - | tig0043397:4705-4724 | Msa1463560:intergenic | 30.0% | |
| !! | TGTATTGATCTTGGTTTGTT+TGG | + | tig0043397:5061-5080 | Msa1463560:intron | 30.0% |
| ! | AGCTGCTTCTTTAATTTCAT+CGG | - | tig0043397:5103-5122 | Msa1463560:intergenic | 30.0% |
| ATTTGTTTACTGCTGTTCAT+CGG | - | tig0043397:5133-5152 | Msa1463560:intergenic | 30.0% | |
| TGTTAATGAATGAAGGAAGA+AGG | + | tig0043397:5188-5207 | Msa1463560:three_prime_UTR | 30.0% | |
| !!! | GAAAGTGAGATCTGGTTTTA+GGG | - | tig0043397:3119-3138 | Msa0403840:intergenic | 35.0% |
| !!! | AGAAAGTGAGATCTGGTTTT+AGG | - | tig0043397:3120-3139 | Msa0403840:intergenic | 35.0% |
| !! | CTCTCTCTAGAATTCAACAA+TGG | + | tig0043397:3138-3157 | Msa1463560:exon | 35.0% |
| !! | TCTCTAGAATTCAACAATGG+CGG | + | tig0043397:3141-3160 | Msa1463560:exon | 35.0% |
| CATCTTAAGGTAGAAAACCT+TGG | - | tig0043397:3527-3546 | Msa1463560:intergenic | 35.0% | |
| ! | GGTTTTCTACCTTAAGATGA+AGG | + | tig0043397:3528-3547 | Msa1463560:CDS | 35.0% |
| TGCAATGTCCTGTAAAACAA+AGG | - | tig0043397:3954-3973 | Msa1463560:intergenic | 35.0% | |
| AAATAATAGATTCCACCGCT+GGG | - | tig0043397:4397-4416 | Msa1463560:intergenic | 35.0% | |
| AAAATAATAGATTCCACCGC+TGG | - | tig0043397:4398-4417 | Msa1463560:intergenic | 35.0% | |
| TGGATTCTACTAACCACTTA+TGG | + | tig0043397:4498-4517 | Msa1463560:intron | 35.0% | |
| AGGTCAAGTAGGCAATAATA+AGG | - | tig0043397:4546-4565 | Msa1463560:intergenic | 35.0% | |
| !! | ATTTTAGGTGTAGGTCAAGT+AGG | - | tig0043397:4557-4576 | Msa1463560:intergenic | 35.0% |
| !! | TGACAACTCATTTTAGGTGT+AGG | - | tig0043397:4566-4585 | Msa1463560:intergenic | 35.0% |
| !! | ATCTTGGTTTGTTTGGTTTC+AGG | + | tig0043397:5068-5087 | Msa1463560:intron | 35.0% |
| ! | TTTGTTTGGTTTCAGGATGA+TGG | + | tig0043397:5075-5094 | Msa1463560:intron | 35.0% |
| TTTGTTTACTGCTGTTCATC+GGG | - | tig0043397:5132-5151 | Msa1463560:intergenic | 35.0% | |
| AGGAGAAGTTTGATCCTAAT+TGG | - | tig0043397:5163-5182 | Msa1463560:intergenic | 35.0% | |
| TTCATGTCTGTTATGAGTTC+TGG | + | tig0043397:5251-5270 | Msa1463560:three_prime_UTR | 35.0% | |
| TTCAGTGTCCTCAAGAAAAT+AGG | - | tig0043397:5333-5352 | Msa1463560:intergenic | 35.0% | |
| TAATATCCGCTCACCAAATT+CGG | - | tig0043397:5415-5434 | Msa1463560:intergenic | 35.0% | |
| !!! | GAGGAATTCACGTTGTTTTT+AGG | + | tig0043397:5525-5544 | Msa1463560:three_prime_UTR | 35.0% |
| TAGAGAGAGAAAGTGAGATC+TGG | - | tig0043397:3127-3146 | Msa0403840:intergenic | 40.0% | |
| ! | CTACCGATCTAAGATCGAAT+CGG | + | tig0043397:3426-3445 | Msa1463560:CDS | 40.0% |
| GAGCTTTCTAACATCTGTGA+CGG | + | tig0043397:3448-3467 | Msa1463560:CDS | 40.0% | |
| GTAGAAAACCTTGGAATCAC+CGG | - | tig0043397:3518-3537 | Msa1463560:intergenic | 40.0% | |
| GGTAATCTCCCTTCATCTTA+AGG | - | tig0043397:3540-3559 | Msa1463560:intergenic | 40.0% | |
| AGATGAAGGGAGATTACCAT+AGG | + | tig0043397:3542-3561 | Msa1463560:CDS | 40.0% | |
| TGAACTCAGCAAGATACCTA+TGG | - | tig0043397:3561-3580 | Msa1463560:intergenic | 40.0% | |
| TATCTTGCTGAGTTCAAGAC+TGG | + | tig0043397:3565-3584 | Msa1463560:CDS | 40.0% | |
| AACCTGAGCAGATTTGTAAG+CGG | - | tig0043397:3626-3645 | Msa1463560:intergenic | 40.0% | |
| AACCTGTTTAGCAAGATTGC+AGG | - | tig0043397:4071-4090 | Msa1463560:intergenic | 40.0% | |
| AATAATAGATTCCACCGCTG+GGG | - | tig0043397:4396-4415 | Msa1463560:intergenic | 40.0% | |
| ! | GCAACAATGATGTTGCGTTT+TGG | + | tig0043397:4478-4497 | Msa1463560:intron | 40.0% |
| !!! | ATGGATCAGACCTCCTTTTT+TGG | + | tig0043397:4517-4536 | Msa1463560:intron | 40.0% |
| ! | TGTTTATTGGTGGTTAGCTC+AGG | + | tig0043397:4591-4610 | Msa1463560:intron | 40.0% |
| GAAGTTATGCTCTTGCTACT+AGG | - | tig0043397:4783-4802 | Msa1463560:intergenic | 40.0% | |
| TGATGAAGCAATTGCTGAAC+TGG | + | tig0043397:4883-4902 | Msa1463560:CDS | 40.0% | |
| TTCGTGATAATCTCACCCTA+TGG | + | tig0043397:4957-4976 | Msa1463560:CDS | 40.0% | |
| AATCAATACCTGCATGTCAG+AGG | - | tig0043397:4984-5003 | Msa1463560:intergenic | 40.0% | |
| ! | TGCTTGTTGCCAATCTCTTT+GGG | + | tig0043397:5211-5230 | Msa1463560:three_prime_UTR | 40.0% |
| !!! | TCTTTGGGTGCTGAGATTTT+AGG | + | tig0043397:5226-5245 | Msa1463560:three_prime_UTR | 40.0% |
| !! | TTATGAGTTCTGGATGTCCT+GGG | + | tig0043397:5261-5280 | Msa1463560:three_prime_UTR | 40.0% |
| AAACTTGATCTCGCCGAATT+TGG | + | tig0043397:5399-5418 | Msa1463560:three_prime_UTR | 40.0% | |
| ! | TTTTATGGGTCATGAACTCG+TGG | + | tig0043397:5442-5461 | Msa1463560:three_prime_UTR | 40.0% |
| GTTATATTTGAGGGAACTCG+TGG | + | tig0043397:5488-5507 | Msa1463560:three_prime_UTR | 40.0% | |
| ! | CGTGGTAGTTTTTGTATGTG+AGG | + | tig0043397:5506-5525 | Msa1463560:three_prime_UTR | 40.0% |
| ATGTAAACGTTCTCTTCCCG+AGG | - | tig0043397:3178-3197 | Msa1463560:intergenic | 45.0% | |
| TCGGGAAGAGAACGTTTACA+TGG | + | tig0043397:3177-3196 | Msa1463560:CDS | 45.0% | |
| CACCATTTCTTCGTAGCGTT+CGG | - | tig0043397:3221-3240 | Msa1463560:intergenic | 45.0% | |
| ! | CGAAGAAATGGTGGAGTTCA+TGG | + | tig0043397:3228-3247 | Msa1463560:CDS | 45.0% |
| GACGGTGAGTTCTTCGTTAT+CGG | - | tig0043397:3272-3291 | Msa1463560:intergenic | 45.0% | |
| TCTTGTAGGCTACAGAGAGA+AGG | - | tig0043397:3306-3325 | Msa1463560:intergenic | 45.0% | |
| GTAGCCTACAAGAACGTCAT+CGG | + | tig0043397:3313-3332 | Msa1463560:CDS | 45.0% | |
| TTCCTCGATCGAACAGAAAG+AGG | + | tig0043397:3363-3382 | Msa1463560:CDS | 45.0% | |
| CGATCTTAGATCGGTAGTCA+CGG | - | tig0043397:3423-3442 | Msa1463560:intergenic | 45.0% | |
| ! | GCTCCGATTCGATCTTAGAT+CGG | - | tig0043397:3432-3451 | Msa1463560:intergenic | 45.0% |
| TGCCACCAACTCATCCAATT+AGG | + | tig0043397:3984-4003 | Msa1463560:CDS | 45.0% | |
| ! | AGCCTAATTGGATGAGTTGG+TGG | - | tig0043397:3989-4008 | Msa1463560:intergenic | 45.0% |
| ACCAACTCATCCAATTAGGC+TGG | + | tig0043397:3988-4007 | Msa1463560:CDS | 45.0% | |
| CCAACTCATCCAATTAGGCT+GGG | + | tig0043397:3989-4008 | Msa1463560:CDS | 45.0% | |
| TGCCTGCAATCTTGCTAAAC+AGG | + | tig0043397:4066-4085 | Msa1463560:CDS | 45.0% | |
| ATAATAGATTCCACCGCTGG+GGG | - | tig0043397:4395-4414 | Msa1463560:intergenic | 45.0% | |
| AAGGAGGTCTGATCCATAAG+TGG | - | tig0043397:4514-4533 | Msa1463560:intergenic | 45.0% | |
| GGTGGTGCCCAAATAACATT+AGG | + | tig0043397:4694-4713 | Msa1463560:intron | 45.0% | |
| ATTGCTGAACTGGATACCCT+TGG | + | tig0043397:4893-4912 | Msa1463560:CDS | 45.0% | |
| CTTGTATGATTCCTCGCCAA+GGG | - | tig0043397:4912-4931 | Msa1463560:intergenic | 45.0% | |
| TACTGCTGTTCATCGGGTTT+AGG | - | tig0043397:5126-5145 | Msa1463560:intergenic | 45.0% | |
| ! | GTGCTTGTTGCCAATCTCTT+TGG | + | tig0043397:5210-5229 | Msa1463560:three_prime_UTR | 45.0% |
| ATCTCAGCACCCAAAGAGAT+TGG | - | tig0043397:5223-5242 | Msa1463560:intergenic | 45.0% | |
| !! | GTTATGAGTTCTGGATGTCC+TGG | + | tig0043397:5260-5279 | Msa1463560:three_prime_UTR | 45.0% |
| AGGACAAACTAAAACAGCCC+AGG | - | tig0043397:5281-5300 | Msa1463560:intergenic | 45.0% | |
| ! | TTCGTAGCGTTCGGCTTGTT+CGG | - | tig0043397:3212-3231 | Msa1463560:intergenic | 50.0% |
| AGCCGAACGCTACGAAGAAA+TGG | + | tig0043397:3216-3235 | Msa1463560:CDS | 50.0% | |
| CGAACGCTACGAAGAAATGG+TGG | + | tig0043397:3219-3238 | Msa1463560:CDS | 50.0% | |
| ! | TTCTTCGTTATCGGCGTTGG+CGG | - | tig0043397:3263-3282 | Msa1463560:intergenic | 50.0% |
| GAGTTCTTCGTTATCGGCGT+TGG | - | tig0043397:3266-3285 | Msa1463560:intergenic | 50.0% | |
| AAGAACTCACCGTCGAAGAG+AGG | + | tig0043397:3278-3297 | Msa1463560:CDS | 50.0% | |
| GAGAAGGTTCCTCTCTTCGA+CGG | - | tig0043397:3290-3309 | Msa1463560:intergenic | 50.0% | |
| TGCTCCGATGACGTTCTTGT+AGG | - | tig0043397:3320-3339 | Msa1463560:intergenic | 50.0% | |
| CTCCTCTTTCTGTTCGATCG+AGG | - | tig0043397:3368-3387 | Msa1463560:intergenic | 50.0% | |
| AGATCGGTAGTCACGGATGA+CGG | - | tig0043397:3416-3435 | Msa1463560:intergenic | 50.0% | |
| AAGCAGCGGAAGGAATGAGA+CGG | - | tig0043397:3495-3514 | Msa1463560:intergenic | 50.0% | |
| CCCAGCCTAATTGGATGAGT+TGG | - | tig0043397:3992-4011 | Msa1463560:intergenic | 50.0% | |
| AGAGCAAGACCCAGCCTAAT+TGG | - | tig0043397:4001-4020 | Msa1463560:intergenic | 50.0% | |
| TAATAGATTCCACCGCTGGG+GGG | - | tig0043397:4394-4413 | Msa1463560:intergenic | 50.0% | |
| ACACCTTGCTCTAGCCTGTA+GGG | + | tig0043397:4668-4687 | Msa1463560:intron | 50.0% | |
| TACTACTCGTGTAGTCCCCA+TGG | + | tig0043397:4717-4736 | Msa1463560:intron | 50.0% | |
| CCTTGTATGATTCCTCGCCA+AGG | - | tig0043397:4913-4932 | Msa1463560:intergenic | 50.0% | |
| CCTTGGCGAGGAATCATACA+AGG | + | tig0043397:4910-4929 | Msa1463560:CDS | 50.0% | |
| CTGCATGTCAGAGGTCCATA+GGG | - | tig0043397:4975-4994 | Msa1463560:intergenic | 50.0% | |
| ! | ATCTCGCCGAATTTGGTGAG+CGG | + | tig0043397:5406-5425 | Msa1463560:three_prime_UTR | 50.0% |
| ATGGGTCATGAACTCGTGGT+AGG | + | tig0043397:5446-5465 | Msa1463560:three_prime_UTR | 50.0% | |
| TGGGTCATGAACTCGTGGTA+GGG | + | tig0043397:5447-5466 | Msa1463560:three_prime_UTR | 50.0% | |
| CTCTTCCCGAGGTGAATGAG+CGG | - | tig0043397:3167-3186 | Msa1463560:intergenic | 55.0% | |
| GAACAGAAAGAGGAGAGCCG+CGG | + | tig0043397:3373-3392 | Msa1463560:CDS | 55.0% | |
| AAACGTGATCCTCGTTGCCG+CGG | - | tig0043397:3393-3412 | Msa1463560:intergenic | 55.0% | |
| AGCAGCGGAAGGAATGAGAC+GGG | - | tig0043397:3494-3513 | Msa1463560:intergenic | 55.0% | |
| CTCATTCCTTCCGCTGCTTC+CGG | + | tig0043397:3496-3515 | Msa1463560:CDS | 55.0% | |
| CTTGGAATCACCGGAAGCAG+CGG | - | tig0043397:3509-3528 | Msa1463560:intergenic | 55.0% | |
| CGCCGCTTACAAATCTGCTC+AGG | + | tig0043397:3621-3640 | Msa1463560:CDS | 55.0% | |
| GCAAGATTGCAGGCACGATC+AGG | - | tig0043397:4061-4080 | Msa1463560:intergenic | 55.0% | |
| TGTAGAAATTGGCCCCCCAG+CGG | + | tig0043397:4379-4398 | Msa1463560:intron | 55.0% | |
| GACACCTTGCTCTAGCCTGT+AGG | + | tig0043397:4667-4686 | Msa1463560:intron | 55.0% | |
| AGTCCCTACAGGCTAGAGCA+AGG | - | tig0043397:4674-4693 | Msa1463560:intergenic | 55.0% | |
| TTGCTCTAGCCTGTAGGGAC+TGG | + | tig0043397:4673-4692 | Msa1463560:intron | 55.0% | |
| TGAACTGGATACCCTTGGCG+AGG | + | tig0043397:4898-4917 | Msa1463560:CDS | 55.0% | |
| CCTGCATGTCAGAGGTCCAT+AGG | - | tig0043397:4976-4995 | Msa1463560:intergenic | 55.0% | |
| CCTATGGACCTCTGACATGC+AGG | + | tig0043397:4973-4992 | Msa1463560:CDS | 55.0% | |
| GAATCACCGGAAGCAGCGGA+AGG | - | tig0043397:3505-3524 | Msa1463560:intergenic | 60.0% | |
| CGCTGCTTCCGGTGATTCCA+AGG | + | tig0043397:3507-3526 | Msa1463560:CDS | 60.0% | |
| CTCAGCAGCCTCCTTACGCT+CGG | - | tig0043397:3593-3612 | Msa1463560:intergenic | 60.0% | |
| CTCTAGCCTGTAGGGACTGG+TGG | + | tig0043397:4676-4695 | Msa1463560:intron | 60.0% | |
| TGGCGGCCGCTCATTCACCT+CGG | + | tig0043397:3158-3177 | Msa1463560:CDS | 65.0% | |
| TCGGAGCACGACGTGCTTCG+TGG | + | tig0043397:3332-3351 | Msa1463560:CDS | 65.0% | |
| ! | CAAGACTGGCGCCGAGCGTA+AGG | + | tig0043397:3579-3598 | Msa1463560:CDS | 65.0% |
| AGAAATTGGCCCCCCAGCGG+TGG | + | tig0043397:4382-4401 | Msa1463560:intron | 65.0% | |
| TGGGCACCACCAGTCCCTAC+AGG | - | tig0043397:4685-4704 | Msa1463560:intergenic | 65.0% | |
| GGCGGCCGCTCATTCACCTC+GGG | + | tig0043397:3159-3178 | Msa1463560:CDS | 70.0% | |
| AGAGGAGAGCCGCGGCAACG+AGG | + | tig0043397:3381-3400 | Msa1463560:CDS | 70.0% | |
| ! | GACTGGCGCCGAGCGTAAGG+AGG | + | tig0043397:3582-3601 | Msa1463560:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043397 | gene | 3054 | 5631 | 3054 | ID=Msa1463560;Name=Msa1463560 |
| tig0043397 | mRNA | 3054 | 5631 | 3054 | ID=Msa1463560-mRNA-1;Parent=Msa1463560;Name=Msa1463560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|1|1|4|485|260 |
| tig0043397 | exon | 3054 | 3642 | 3054 | ID=Msa1463560-mRNA-1:exon:24108;Parent=Msa1463560-mRNA-1 |
| tig0043397 | exon | 3965 | 4087 | 3965 | ID=Msa1463560-mRNA-1:exon:24109;Parent=Msa1463560-mRNA-1 |
| tig0043397 | exon | 4878 | 4994 | 4878 | ID=Msa1463560-mRNA-1:exon:24110;Parent=Msa1463560-mRNA-1 |
| tig0043397 | exon | 5090 | 5631 | 5090 | ID=Msa1463560-mRNA-1:exon:24111;Parent=Msa1463560-mRNA-1 |
| tig0043397 | five_prime_UTR | 3054 | 3156 | 3054 | ID=Msa1463560-mRNA-1:five_prime_utr;Parent=Msa1463560-mRNA-1 |
| tig0043397 | CDS | 3157 | 3642 | 3157 | ID=Msa1463560-mRNA-1:cds;Parent=Msa1463560-mRNA-1 |
| tig0043397 | CDS | 3965 | 4087 | 3965 | ID=Msa1463560-mRNA-1:cds;Parent=Msa1463560-mRNA-1 |
| tig0043397 | CDS | 4878 | 4994 | 4878 | ID=Msa1463560-mRNA-1:cds;Parent=Msa1463560-mRNA-1 |
| tig0043397 | CDS | 5090 | 5146 | 5090 | ID=Msa1463560-mRNA-1:cds;Parent=Msa1463560-mRNA-1 |
| tig0043397 | three_prime_UTR | 5147 | 5631 | 5147 | ID=Msa1463560-mRNA-1:three_prime_utr;Parent=Msa1463560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
