AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549540 MtrunA17_Chr4g0034241 98.092 262 5 0 1 262 1 262 0.0 528
Msa0549540 MtrunA17_Chr5g0408291 47.701 174 75 4 77 245 88 250 2.89e-48 160
Msa0549540 MtrunA17_Chr4g0042851 37.079 178 104 2 84 261 123 292 1.21e-37 134
Msa0549540 MtrunA17_Chr3g0089791 90.196 51 5 0 144 194 5 55 3.78e-26 97.4
Msa0549540 MtrunA17_Chr3g0089821 67.532 77 11 1 186 262 1 63 5.76e-26 96.7
Msa0549540 MtrunA17_Chr3g0089631 64.286 56 8 2 137 192 1 44 2.65e-12 60.5
Msa0549540 MtrunA17_Chr3g0089521 60.714 56 10 2 137 192 1 44 6.19e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549540 AT5G13720.1 70.943 265 70 4 1 262 1 261 8.82e-121 345
Msa0549540 AT4G19390.1 53.073 179 78 1 81 259 98 270 2.34e-58 187
Msa0549540 AT4G19390.2 51.099 182 83 1 78 259 7 182 4.85e-57 181

Find 77 sgRNAs with CRISPR-Local

Find 613 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAAGCTTGCATGAATTT+AGG 0.199071 4_1:-44763876 None:intergenic
CAAAGAGAGAGGATCCTTTA+AGG 0.208592 4_1:-44763312 None:intergenic
ACAACATTTATAAGGATATT+AGG 0.225930 4_1:+44763806 Msa0549540:three_prime_UTR
TTCATTATACAACATTTATA+AGG 0.266499 4_1:+44763798 Msa0549540:three_prime_UTR
TCTGTCGACCGTGCCCTTAA+AGG 0.289306 4_1:+44763298 Msa0549540:CDS
CTTAAAGGATCCTCTCTCTT+TGG 0.305772 4_1:+44763313 Msa0549540:CDS
GCTGCAGATGTTTATCTTGC+TGG 0.317902 4_1:+44763202 Msa0549540:intron
GTTGTTGAATGCATAGTTAA+AGG 0.320779 4_1:-44757416 None:intergenic
TTGAAGCATACAAAGTCTAT+TGG 0.342156 4_1:+44762912 Msa0549540:CDS
CTTTGGAATGTTCGCTTTGA+AGG 0.345818 4_1:+44763330 Msa0549540:CDS
GCTGTTGGAGGTTCCTTGGC+TGG 0.360211 4_1:+44762381 Msa0549540:CDS
GCTTGCTGTTGGAGGTTCCT+TGG 0.375762 4_1:+44762377 Msa0549540:CDS
GCTTATTATTGTAAAGTAAG+AGG 0.378779 4_1:+44763927 Msa0549540:three_prime_UTR
GTGAAGAGAATAAGGTGTAG+AGG 0.384322 4_1:-44757269 None:intergenic
AAAGAGAGAGGATCCTTTAA+GGG 0.401841 4_1:-44763311 None:intergenic
ATCAGATGAAGAAGAGCTTA+AGG 0.404031 4_1:-44757341 None:intergenic
CTGCTTCTAGTTGAAGCAAT+TGG 0.409753 4_1:+44762974 Msa0549540:CDS
CGGTTGATGTGAAGAGAATA+AGG 0.410376 4_1:-44757277 None:intergenic
CTAATGGCAACCCACTTGTT+AGG 0.414680 4_1:+44757440 Msa0549540:CDS
TATGCATTCAACAACACTAA+TGG 0.422687 4_1:+44757424 Msa0549540:CDS
TTGGCACTGCTTGCTGTTGG+AGG 0.437122 4_1:+44762369 Msa0549540:CDS
CTTATTATTGTAAAGTAAGA+GGG 0.443906 4_1:+44763928 Msa0549540:three_prime_UTR
CACAACAAAGTGTGCCATCC+AGG 0.447097 4_1:+44757380 Msa0549540:CDS
GGCACACTTTGTTGTGATGA+TGG 0.458728 4_1:-44757373 None:intergenic
AAAGGCAGGCTCAGTTGGCC+TGG 0.464199 4_1:-44757398 None:intergenic
GGTAGTCATTGCCACAGGAT+TGG 0.464962 4_1:+44763608 Msa0549540:CDS
GCTTAGTTACATATCTTCAA+TGG 0.465256 4_1:+44757219 Msa0549540:exon
TGAAGAGAATAAGGTGTAGA+GGG 0.468705 4_1:-44757268 None:intergenic
GCAGGCTCAGTTGGCCTGGA+TGG 0.471265 4_1:-44757394 None:intergenic
CTTGCTTATGCAGATTATGA+AGG 0.473431 4_1:-44763683 None:intergenic
TAACCAAAATACCCTTTCAA+TGG 0.475319 4_1:-44757485 None:intergenic
ATGGAAAATTGAAGAAGGTT+CGG 0.482688 4_1:-44764038 None:intergenic
AATGTTTGAGAGGAGCAAAA+TGG 0.492842 4_1:+44763587 Msa0549540:CDS
AAATCAAACTGTGGTAGCCT+TGG 0.494020 4_1:-44763954 None:intergenic
TAGTTAAAGGCAGGCTCAGT+TGG 0.496213 4_1:-44757403 None:intergenic
AAAGTACTCAACAACTCCAT+TGG 0.497255 4_1:+44763997 Msa0549540:three_prime_UTR
TATGTAAGTAAACACTCATA+TGG 0.508084 4_1:+44763744 Msa0549540:three_prime_UTR
TACCGAGTCTTCCATTGAAA+GGG 0.509099 4_1:+44757474 Msa0549540:CDS
AGGAGTTCACACTGGAAAGA+TGG 0.517911 4_1:+44762949 Msa0549540:CDS
GAAACAAGTCATGCAGGTGA+TGG 0.520225 4_1:-44764057 None:intergenic
ATACCGAGTCTTCCATTGAA+AGG 0.525329 4_1:+44757473 Msa0549540:CDS
TGATGAACTGAAAACAAAAG+TGG 0.526878 4_1:+44763533 Msa0549540:CDS
GATGAATTACAAATTGAGCT+TGG 0.527900 4_1:+44764151 Msa0549540:three_prime_UTR
TTGAATGCATAGTTAAAGGC+AGG 0.530005 4_1:-44757412 None:intergenic
TTAAACCTTGAGGAGGCCAA+TGG 0.537182 4_1:-44764013 None:intergenic
TGGCAACCCACTTGTTAGGA+TGG 0.550227 4_1:+44757444 Msa0549540:CDS
GATGAACTGAAAACAAAAGT+GGG 0.552398 4_1:+44763534 Msa0549540:CDS
CAACTCCATTGGCCTCCTCA+AGG 0.561205 4_1:+44764008 Msa0549540:three_prime_UTR
TATTGGACAAGTTGTGTCAA+AGG 0.561661 4_1:+44762929 Msa0549540:CDS
TACCCTTTCAATGGAAGACT+CGG 0.563849 4_1:-44757476 None:intergenic
ATTCTAGAAACAAGTCATGC+AGG 0.564128 4_1:-44764063 None:intergenic
GCAGAGGAGTGAGCCAGCCA+AGG 0.567638 4_1:-44762394 None:intergenic
CTACCACAGTTTGATTTGTG+AGG 0.570792 4_1:+44763960 Msa0549540:three_prime_UTR
GAGAGGATCCTTTAAGGGCA+CGG 0.580531 4_1:-44763306 None:intergenic
TAAGACATCAAAACTAGTGT+GGG 0.581464 4_1:-44764088 None:intergenic
TTAAGGGCACGGTCGACAGA+AGG 0.584565 4_1:-44763295 None:intergenic
AGGTGATGGAAAATTGAAGA+AGG 0.593412 4_1:-44764043 None:intergenic
TTCGGCTTTAAACCTTGAGG+AGG 0.594059 4_1:-44764020 None:intergenic
CTAAGACATCAAAACTAGTG+TGG 0.594497 4_1:-44764089 None:intergenic
ACTATACATTTAGAAAGCAG+AGG 0.602382 4_1:-44762410 None:intergenic
GGGTTCGAAACATGTACAAG+AGG 0.604111 4_1:+44764241 Msa0549540:three_prime_UTR
GGTTCGAAACATGTACAAGA+GGG 0.605570 4_1:+44764242 Msa0549540:three_prime_UTR
TTTGAACCATCCTAACAAGT+GGG 0.611814 4_1:-44757450 None:intergenic
ACAGAAGGTTGCACATCATG+AGG 0.628237 4_1:-44763280 None:intergenic
AAAATGGTAGTCATTGCCAC+AGG 0.629232 4_1:+44763603 Msa0549540:CDS
AGGTTCGGCTTTAAACCTTG+AGG 0.630926 4_1:-44764023 None:intergenic
AGCGAACATTCCAAAGAGAG+AGG 0.634453 4_1:-44763323 None:intergenic
TTCGAAACATGTACAAGAGG+GGG 0.642054 4_1:+44764244 Msa0549540:three_prime_UTR
TGTGTCAAAGGAGTTCACAC+TGG 0.642348 4_1:+44762941 Msa0549540:CDS
GTAAAGTAAGAGGGAAACCA+AGG 0.643118 4_1:+44763937 Msa0549540:three_prime_UTR
CTGTTGCTACTAAATACTGA+TGG 0.653893 4_1:-44763834 None:intergenic
ACTTAGTAAATCCAATCCTG+TGG 0.659554 4_1:-44763619 None:intergenic
ATGAACTGAAAACAAAAGTG+GGG 0.689995 4_1:+44763535 Msa0549540:CDS
GTTCGAAACATGTACAAGAG+GGG 0.701990 4_1:+44764243 Msa0549540:three_prime_UTR
AAGCCTCACAAATCAAACTG+TGG 0.716416 4_1:-44763963 None:intergenic
TTTGTAAAAGAAACTCGATG+GGG 0.717920 4_1:-44757313 None:intergenic
GATGGGGAAGATGTGATGAA+CGG 0.743142 4_1:-44757297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATAAAAATAAAAATA+AGG - chr4_1:44757587-44757606 None:intergenic 0.0%
!!! TATATTGACTTAAATATATT+AGG + chr4_1:44757547-44757566 Msa0549540:intron 10.0%
!!! TAATATATTTTTGTTCAAAA+TGG - chr4_1:44763030-44763049 None:intergenic 10.0%
!!! TTAAGTAAAGTCTTTTTTTT+TGG + chr4_1:44757660-44757679 Msa0549540:intron 15.0%
!! AAAAATACAAGTTCTTTATT+TGG - chr4_1:44758647-44758666 None:intergenic 15.0%
!! CCAATAATATTATTAAGTAA+CGG + chr4_1:44760196-44760215 Msa0549540:intron 15.0%
!!! GCATATTTTTTAAACAATAT+TGG - chr4_1:44760420-44760439 None:intergenic 15.0%
!! TCAATACTTATAAACAATAA+TGG - chr4_1:44761615-44761634 None:intergenic 15.0%
!! AGAATCAACATAAATATTAT+AGG + chr4_1:44761689-44761708 Msa0549540:intron 15.0%
!! GAATCAACATAAATATTATA+GGG + chr4_1:44761690-44761709 Msa0549540:intron 15.0%
!! ATTTGAAAAATGTTTAATTG+AGG + chr4_1:44761940-44761959 Msa0549540:intron 15.0%
!! ATATGATAGATTTGATAAAT+TGG + chr4_1:44762004-44762023 Msa0549540:intron 15.0%
!!! AAAAGTATAATCATCATTAA+GGG - chr4_1:44762752-44762771 None:intergenic 15.0%
!!! AAAAAGTATAATCATCATTA+AGG - chr4_1:44762753-44762772 None:intergenic 15.0%
!!! ATGATTATACTTTTTCTTTA+GGG + chr4_1:44762758-44762777 Msa0549540:intron 15.0%
!! TTCATTATACAACATTTATA+AGG + chr4_1:44763798-44763817 Msa0549540:three_prime_UTR 15.0%
!!! ATAAAGAACTTGTATTTTTC+CGG + chr4_1:44758648-44758667 Msa0549540:intron 20.0%
!!! GCTAAAAATATTTTGAAGAA+TGG - chr4_1:44759044-44759063 None:intergenic 20.0%
!! CCGTTACTTAATAATATTAT+TGG - chr4_1:44760199-44760218 None:intergenic 20.0%
!! TGGAATAGATAAAAATAACA+AGG - chr4_1:44761595-44761614 None:intergenic 20.0%
!! ACTTTATATTATTCACTTCA+CGG + chr4_1:44761879-44761898 Msa0549540:intron 20.0%
!!! TTGATGATGTTTAGAATAAA+TGG + chr4_1:44762072-44762091 Msa0549540:intron 20.0%
!! AAAAAGCTTACAATTAGAAA+AGG - chr4_1:44762314-44762333 None:intergenic 20.0%
!!! TTTTCTAATTGTAAGCTTTT+TGG + chr4_1:44762313-44762332 Msa0549540:intron 20.0%
!!! AATTTTTGACTTTCGTTTTT+TGG + chr4_1:44762350-44762369 Msa0549540:CDS 20.0%
!!! TATTTTCAACTTATGTTCAT+AGG + chr4_1:44762606-44762625 Msa0549540:intron 20.0%
!!! GTTGTTTTTATAAGTTATCA+TGG - chr4_1:44762636-44762655 None:intergenic 20.0%
!! AGTTCATATCAGTATTAATA+AGG - chr4_1:44762694-44762713 None:intergenic 20.0%
!! AAAGTATAATCATCATTAAG+GGG - chr4_1:44762751-44762770 None:intergenic 20.0%
!!! GATGATTATACTTTTTCTTT+AGG + chr4_1:44762757-44762776 Msa0549540:intron 20.0%
!!! TGATTATACTTTTTCTTTAG+GGG + chr4_1:44762759-44762778 Msa0549540:intron 20.0%
!!! TATATATTCTCGATCATTTT+AGG + chr4_1:44762874-44762893 Msa0549540:intron 20.0%
!!! ATATATTCTCGATCATTTTA+GGG + chr4_1:44762875-44762894 Msa0549540:intron 20.0%
!! TATTAAAGAGTTTCTTGAAA+CGG + chr4_1:44763045-44763064 Msa0549540:intron 20.0%
!!! ACTGTAAGTTACTAAATTTT+CGG - chr4_1:44763071-44763090 None:intergenic 20.0%
!! GTAAACTATTATCAGAAAAT+GGG - chr4_1:44763133-44763152 None:intergenic 20.0%
!! AGTAAACTATTATCAGAAAA+TGG - chr4_1:44763134-44763153 None:intergenic 20.0%
!! CTTTCTTGAATTCTATAAAA+TGG + chr4_1:44763167-44763186 Msa0549540:intron 20.0%
!!! AATTTTCAGCAATAATATTC+TGG - chr4_1:44763771-44763790 None:intergenic 20.0%
!! ACAACATTTATAAGGATATT+AGG + chr4_1:44763806-44763825 Msa0549540:three_prime_UTR 20.0%
!! CTTATTATTGTAAAGTAAGA+GGG + chr4_1:44763928-44763947 Msa0549540:three_prime_UTR 20.0%
!! TTTTGTAAAAGAAACTCGAT+GGG - chr4_1:44757317-44757336 None:intergenic 25.0%
!! GACTATCTTGTAATTAGTTT+GGG + chr4_1:44757891-44757910 Msa0549540:intron 25.0%
! TATACTCCATTCTTATTAAG+AGG + chr4_1:44758771-44758790 Msa0549540:intron 25.0%
!! TCAATTACTGGAATGATTTT+GGG - chr4_1:44758980-44758999 None:intergenic 25.0%
!! TTCAATTACTGGAATGATTT+TGG - chr4_1:44758981-44759000 None:intergenic 25.0%
!!! TTTTGAAGAATGGTTTTGTT+TGG - chr4_1:44759034-44759053 None:intergenic 25.0%
!!! TCTTCAAAATATTTTTAGCC+CGG + chr4_1:44759045-44759064 Msa0549540:intron 25.0%
! GCAAAATAAAGATAAGCTTT+GGG - chr4_1:44759162-44759181 None:intergenic 25.0%
! TGCAAAATAAAGATAAGCTT+TGG - chr4_1:44759163-44759182 None:intergenic 25.0%
!! AAATGAATTCCTTTTCCATT+AGG + chr4_1:44759290-44759309 Msa0549540:intron 25.0%
!! AATGAATTCCTTTTCCATTA+GGG + chr4_1:44759291-44759310 Msa0549540:intron 25.0%
!! AAACAACCCGAAATTTTATT+TGG - chr4_1:44759322-44759341 None:intergenic 25.0%
! ATACAAAGGATAAAGAGATA+GGG + chr4_1:44759857-44759876 Msa0549540:intron 25.0%
! AGGAAATTATTCACTTTATG+CGG - chr4_1:44760117-44760136 None:intergenic 25.0%
!!! TGATAATTCTATTGTTTTGC+AGG - chr4_1:44760137-44760156 None:intergenic 25.0%
! CAAAACAATAGAATTATCAG+AGG + chr4_1:44760138-44760157 Msa0549540:intron 25.0%
! AACCTACAAAATCATTACTA+AGG - chr4_1:44760242-44760261 None:intergenic 25.0%
! TGAAACTTCATCTTTAGTAA+TGG + chr4_1:44760495-44760514 Msa0549540:intron 25.0%
! GAAACTTCATCTTTAGTAAT+GGG + chr4_1:44760496-44760515 Msa0549540:intron 25.0%
! AGAGAAAATTGGGTTAAATT+TGG - chr4_1:44760757-44760776 None:intergenic 25.0%
!!! TTTTTCAAGAGGAAATGTTA+TGG - chr4_1:44760792-44760811 None:intergenic 25.0%
!!! TAATCACATTCTTTTTCAAG+AGG - chr4_1:44760803-44760822 None:intergenic 25.0%
! TCATATGCTCTACATATTAT+AGG + chr4_1:44761662-44761681 Msa0549540:intron 25.0%
! GTACAAATTTACAAATATCC+TGG + chr4_1:44762096-44762115 Msa0549540:intron 25.0%
! AAATATCCTGGATATATACA+TGG + chr4_1:44762108-44762127 Msa0549540:intron 25.0%
!! ATACTAATGTTACACCTTTT+GGG + chr4_1:44762169-44762188 Msa0549540:intron 25.0%
! ACAAATGTTAGTAGTTAGTT+TGG - chr4_1:44762266-44762285 None:intergenic 25.0%
! TTAGGTCAGATTATTATCTA+CGG + chr4_1:44762514-44762533 Msa0549540:intron 25.0%
!!! GATTATACTTTTTCTTTAGG+GGG + chr4_1:44762760-44762779 Msa0549540:intron 25.0%
! ATATCCAGTCAAATATATGA+AGG - chr4_1:44762857-44762876 None:intergenic 25.0%
! AGAATTCAAGAAAGACTAAA+TGG - chr4_1:44763161-44763180 None:intergenic 25.0%
! AAATAAAATCAACGTCATGA+GGG - chr4_1:44763401-44763420 None:intergenic 25.0%
! TAAATAAAATCAACGTCATG+AGG - chr4_1:44763402-44763421 None:intergenic 25.0%
! TTCTTGTAAAAATGTTTGAG+AGG + chr4_1:44763577-44763596 Msa0549540:CDS 25.0%
! TATGTAAGTAAACACTCATA+TGG + chr4_1:44763744-44763763 Msa0549540:three_prime_UTR 25.0%
! GCTTATTATTGTAAAGTAAG+AGG + chr4_1:44763927-44763946 Msa0549540:three_prime_UTR 25.0%
GCTTAGTTACATATCTTCAA+TGG + chr4_1:44757219-44757238 Msa0549540:exon 30.0%
TTTGTAAAAGAAACTCGATG+GGG - chr4_1:44757316-44757335 None:intergenic 30.0%
! CTTTTGTAAAAGAAACTCGA+TGG - chr4_1:44757318-44757337 None:intergenic 30.0%
GTTGTTGAATGCATAGTTAA+AGG - chr4_1:44757419-44757438 None:intergenic 30.0%
TATGCATTCAACAACACTAA+TGG + chr4_1:44757424-44757443 Msa0549540:CDS 30.0%
TAACCAAAATACCCTTTCAA+TGG - chr4_1:44757488-44757507 None:intergenic 30.0%
TTTAATCCTTCGATTCTTAG+AGG + chr4_1:44757602-44757621 Msa0549540:intron 30.0%
GGACTATCTTGTAATTAGTT+TGG + chr4_1:44757890-44757909 Msa0549540:intron 30.0%
!! AAAGAAGCACCTTAATATCT+TGG + chr4_1:44757914-44757933 Msa0549540:intron 30.0%
TGTTCTCATCCAAGATATTA+AGG - chr4_1:44757926-44757945 None:intergenic 30.0%
! TGTGCTATTCTTAATGTTGA+CGG - chr4_1:44758198-44758217 None:intergenic 30.0%
TATTCAAACACATAGCGTTA+CGG + chr4_1:44758352-44758371 Msa0549540:intron 30.0%
!! AAGGATGTTCTCACTTTTAA+CGG - chr4_1:44758903-44758922 None:intergenic 30.0%
! TTTTCAGAAAGATACACATC+TGG - chr4_1:44759131-44759150 None:intergenic 30.0%
AAGGAATTCATTTAGTTGGT+TGG - chr4_1:44759283-44759302 None:intergenic 30.0%
GGAAAAGGAATTCATTTAGT+TGG - chr4_1:44759287-44759306 None:intergenic 30.0%
CTTATTACATGCAGATTAAC+TGG - chr4_1:44759376-44759395 None:intergenic 30.0%
TTAATCTGCATGTAATAAGC+TGG + chr4_1:44759377-44759396 Msa0549540:intron 30.0%
!! ACAGCTTTAGACAAATACTT+GGG - chr4_1:44759548-44759567 None:intergenic 30.0%
!! TACAGCTTTAGACAAATACT+TGG - chr4_1:44759549-44759568 None:intergenic 30.0%
! AAGTGAGCTTAGTAATCTTT+TGG + chr4_1:44759591-44759610 Msa0549540:intron 30.0%
! GAACCTAAATTGAGAGTTTT+TGG + chr4_1:44759706-44759725 Msa0549540:intron 30.0%
AAGCCAAAAACTCTCAATTT+AGG - chr4_1:44759712-44759731 None:intergenic 30.0%
TTCTATTGCAATCAACAATG+CGG - chr4_1:44759828-44759847 None:intergenic 30.0%
CTATCTCTTTATCCTTTGTA+TGG - chr4_1:44759858-44759877 None:intergenic 30.0%
CATACAAAGGATAAAGAGAT+AGG + chr4_1:44759856-44759875 Msa0549540:intron 30.0%
TACAAAGGATAAAGAGATAG+GGG + chr4_1:44759858-44759877 Msa0549540:intron 30.0%
ATCCCAATTAACATTGTCAA+AGG + chr4_1:44760039-44760058 Msa0549540:intron 30.0%
AGCCTTTGACAATGTTAATT+GGG - chr4_1:44760044-44760063 None:intergenic 30.0%
AAGCCTTTGACAATGTTAAT+TGG - chr4_1:44760045-44760064 None:intergenic 30.0%
! GACCTTAGTAATGATTTTGT+AGG + chr4_1:44760237-44760256 Msa0549540:intron 30.0%
GTTATGTTGCAAAGTCTAAT+GGG + chr4_1:44760259-44760278 Msa0549540:intron 30.0%
! TCTAAAGTCTTTGTAGGTAT+TGG + chr4_1:44760282-44760301 Msa0549540:intron 30.0%
CTAAAGTCTTTGTAGGTATT+GGG + chr4_1:44760283-44760302 Msa0549540:intron 30.0%
AAACAATATTGGCACATTGT+TGG - chr4_1:44760409-44760428 None:intergenic 30.0%
AATATGCATTGAAAACCATC+CGG + chr4_1:44760433-44760452 Msa0549540:intron 30.0%
!!! AGAATTTTAGAGCTTCTTCT+TGG + chr4_1:44760620-44760639 Msa0549540:intron 30.0%
CCAGAAATCTAGAGAAAATT+GGG - chr4_1:44760767-44760786 None:intergenic 30.0%
ACCAGAAATCTAGAGAAAAT+TGG - chr4_1:44760768-44760787 None:intergenic 30.0%
GAATGTGATTATATTCACGT+TGG + chr4_1:44760812-44760831 Msa0549540:intron 30.0%
!!! TTGGAGATCTTTTTCAATGA+GGG + chr4_1:44760831-44760850 Msa0549540:intron 30.0%
CAACTCTTTCAAGATAAGAT+TGG + chr4_1:44760869-44760888 Msa0549540:intron 30.0%
GCAACATATTCCAAAGAAAA+AGG - chr4_1:44760921-44760940 None:intergenic 30.0%
!! TCTTTCAATACAGAAGTGTT+TGG - chr4_1:44760943-44760962 None:intergenic 30.0%
CACTTCTGTATTGAAAGATA+TGG + chr4_1:44760945-44760964 Msa0549540:intron 30.0%
GCATAGCAAATATTAATTGG+CGG - chr4_1:44761194-44761213 None:intergenic 30.0%
GGGACTAATTTATAACAATG+AGG + chr4_1:44761710-44761729 Msa0549540:intron 30.0%
GACATTGGAATGTTTACTAT+TGG - chr4_1:44761737-44761756 None:intergenic 30.0%
AACATTCCAATGTCTTACTT+AGG + chr4_1:44761743-44761762 Msa0549540:intron 30.0%
ACATTCCAATGTCTTACTTA+GGG + chr4_1:44761744-44761763 Msa0549540:intron 30.0%
TTAATCCCTAAGTAAGACAT+TGG - chr4_1:44761752-44761771 None:intergenic 30.0%
! AACCAAAAGAAACTTTTTGC+AGG + chr4_1:44761772-44761791 Msa0549540:intron 30.0%
! TTCCTGCAAAAAGTTTCTTT+TGG - chr4_1:44761777-44761796 None:intergenic 30.0%
! AAACTTTTTGCAGGAACTAA+AGG + chr4_1:44761781-44761800 Msa0549540:intron 30.0%
!! TGATAAATTGGTGATGTGAA+AGG + chr4_1:44762016-44762035 Msa0549540:intron 30.0%
ACAATACCATGTATATATCC+AGG - chr4_1:44762117-44762136 None:intergenic 30.0%
! CATACTAATGTTACACCTTT+TGG + chr4_1:44762168-44762187 Msa0549540:intron 30.0%
! TTAGTAGTTAGTTTGGTAGA+GGG - chr4_1:44762259-44762278 None:intergenic 30.0%
ACTATACATTTAGAAAGCAG+AGG - chr4_1:44762413-44762432 None:intergenic 30.0%
TAGGTCAGATTATTATCTAC+GGG + chr4_1:44762515-44762534 Msa0549540:intron 30.0%
TTTGTTACATTGCTTGAAAG+AGG + chr4_1:44762546-44762565 Msa0549540:intron 30.0%
TTGAAGCATACAAAGTCTAT+TGG + chr4_1:44762912-44762931 Msa0549540:CDS 30.0%
!!! GGTACTGTTATGTTGATTTT+TGG + chr4_1:44763223-44763242 Msa0549540:CDS 30.0%
!!! TGTTATGTTGATTTTTGGCA+TGG + chr4_1:44763228-44763247 Msa0549540:CDS 30.0%
!!! GTTATGTTGATTTTTGGCAT+GGG + chr4_1:44763229-44763248 Msa0549540:CDS 30.0%
TGTTAAGATGATTGAACAGT+TGG - chr4_1:44763454-44763473 None:intergenic 30.0%
! GTATATATTGTCTCCTTTTC+AGG + chr4_1:44763479-44763498 Msa0549540:intron 30.0%
TGATGAACTGAAAACAAAAG+TGG + chr4_1:44763533-44763552 Msa0549540:CDS 30.0%
GATGAACTGAAAACAAAAGT+GGG + chr4_1:44763534-44763553 Msa0549540:CDS 30.0%
ATGAACTGAAAACAAAAGTG+GGG + chr4_1:44763535-44763554 Msa0549540:CDS 30.0%
TTGAAAGCTTGCATGAATTT+AGG - chr4_1:44763879-44763898 None:intergenic 30.0%
ATGGAAAATTGAAGAAGGTT+CGG - chr4_1:44764041-44764060 None:intergenic 30.0%
TAAGACATCAAAACTAGTGT+GGG - chr4_1:44764091-44764110 None:intergenic 30.0%
! TTTTGATGTCTTAGTTGAAG+CGG + chr4_1:44764098-44764117 Msa0549540:three_prime_UTR 30.0%
GATGAATTACAAATTGAGCT+TGG + chr4_1:44764151-44764170 Msa0549540:three_prime_UTR 30.0%
TACAAAGAAGCCAAGAAAAA+AGG - chr4_1:44764181-44764200 None:intergenic 30.0%
! AGTATGAATTTTGTCACAAG+TGG + chr4_1:44764220-44764239 Msa0549540:three_prime_UTR 30.0%
! GTATGAATTTTGTCACAAGT+GGG + chr4_1:44764221-44764240 Msa0549540:three_prime_UTR 30.0%
TGAAGAGAATAAGGTGTAGA+GGG - chr4_1:44757271-44757290 None:intergenic 35.0%
ATCAGATGAAGAAGAGCTTA+AGG - chr4_1:44757344-44757363 None:intergenic 35.0%
TTGAATGCATAGTTAAAGGC+AGG - chr4_1:44757415-44757434 None:intergenic 35.0%
TTTGAACCATCCTAACAAGT+GGG - chr4_1:44757453-44757472 None:intergenic 35.0%
! TTTTGAACCATCCTAACAAG+TGG - chr4_1:44757454-44757473 None:intergenic 35.0%
!!! CTTCCATTGAAAGGGTATTT+TGG + chr4_1:44757482-44757501 Msa0549540:intron 35.0%
! GACACTAGTGATTTGAAGTA+CGG + chr4_1:44757630-44757649 Msa0549540:intron 35.0%
TGAGCAAAGAAACAGCAAAA+AGG + chr4_1:44757688-44757707 Msa0549540:intron 35.0%
CATCTATCATGGTCTTTCAA+TGG - chr4_1:44758046-44758065 None:intergenic 35.0%
CATTGAAAGACCATGATAGA+TGG + chr4_1:44758044-44758063 Msa0549540:intron 35.0%
!!! TTTTTTCTAGCAGGGTATTC+AGG - chr4_1:44758114-44758133 None:intergenic 35.0%
! GTGCTATTCTTAATGTTGAC+GGG - chr4_1:44758197-44758216 None:intergenic 35.0%
TGATATCTGCTACAGAATTC+TGG + chr4_1:44758292-44758311 Msa0549540:intron 35.0%
TCTGGATGTGATATATCAGT+TGG + chr4_1:44758310-44758329 Msa0549540:intron 35.0%
ATCTGCAATCACGAATACAA+TGG + chr4_1:44758517-44758536 Msa0549540:intron 35.0%
ATCACGAATACAATGGAAGA+AGG + chr4_1:44758524-44758543 Msa0549540:intron 35.0%
! GATTTGGCATCTAAAACTTC+CGG - chr4_1:44758670-44758689 None:intergenic 35.0%
!! AATCTGATTCGGGTAAAGAA+AGG + chr4_1:44758721-44758740 Msa0549540:intron 35.0%
GTTTGGCCTCTTAATAAGAA+TGG - chr4_1:44758780-44758799 None:intergenic 35.0%
CTTATTAAGAGGCCAAACAA+AGG + chr4_1:44758782-44758801 Msa0549540:intron 35.0%
CAGATTTAATGATGCAGTTG+AGG - chr4_1:44758811-44758830 None:intergenic 35.0%
!! AGGATGTTCTCACTTTTAAC+GGG - chr4_1:44758902-44758921 None:intergenic 35.0%
ACAGTAGCATGAAGTAAACT+CGG + chr4_1:44759104-44759123 Msa0549540:intron 35.0%
! TCTGCTTGGTAAATTGGTTT+GGG - chr4_1:44759192-44759211 None:intergenic 35.0%
CATTTGTCTGCTTGGTAAAT+TGG - chr4_1:44759198-44759217 None:intergenic 35.0%
GGCCTCTCCAAATAAAATTT+CGG + chr4_1:44759312-44759331 Msa0549540:intron 35.0%
GCCTCTCCAAATAAAATTTC+GGG + chr4_1:44759313-44759332 Msa0549540:intron 35.0%
!! ACCCGAAATTTTATTTGGAG+AGG - chr4_1:44759317-44759336 None:intergenic 35.0%
ATACTGTCACAGATACTTTG+AGG + chr4_1:44759347-44759366 Msa0549540:intron 35.0%
TACTGTCACAGATACTTTGA+GGG + chr4_1:44759348-44759367 Msa0549540:intron 35.0%
AAATTGAAGTCGCTTCTCTT+GGG + chr4_1:44759500-44759519 Msa0549540:intron 35.0%
ACTAAGCTCACTTCTATTTC+TGG - chr4_1:44759584-44759603 None:intergenic 35.0%
! TGAGCTTAGTAATCTTTTGG+TGG + chr4_1:44759594-44759613 Msa0549540:intron 35.0%
! GAGCTTAGTAATCTTTTGGT+GGG + chr4_1:44759595-44759614 Msa0549540:intron 35.0%
! AGCTTAGTAATCTTTTGGTG+GGG + chr4_1:44759596-44759615 Msa0549540:intron 35.0%
TCATCAAAGACCTCTTTGAT+CGG - chr4_1:44759688-44759707 None:intergenic 35.0%
!!! TTTTGGCTTTTGTGAACAGA+AGG + chr4_1:44759723-44759742 Msa0549540:intron 35.0%
TAGAAAGCTTCTCCATACAA+AGG + chr4_1:44759843-44759862 Msa0549540:intron 35.0%
ACAAAGGATAAAGAGATAGG+GGG + chr4_1:44759859-44759878 Msa0549540:intron 35.0%
ACCATTCCATAAGATAGTGA+AGG + chr4_1:44759937-44759956 Msa0549540:intron 35.0%
ACCTTCACTATCTTATGGAA+TGG - chr4_1:44759941-44759960 None:intergenic 35.0%
ATTCCATAAGATAGTGAAGG+TGG + chr4_1:44759940-44759959 Msa0549540:intron 35.0%
CAAGAAGAAAAAGGGATATG+TGG - chr4_1:44760089-44760108 None:intergenic 35.0%
! CACATATCCCTTTTTCTTCT+TGG + chr4_1:44760087-44760106 Msa0549540:intron 35.0%
GGTTATGTTGCAAAGTCTAA+TGG + chr4_1:44760258-44760277 Msa0549540:intron 35.0%
! AATGGGTCTAAAGTCTTTGT+AGG + chr4_1:44760276-44760295 Msa0549540:intron 35.0%
! GTATTGGGAGAGTCAATTTT+GGG + chr4_1:44760298-44760317 Msa0549540:intron 35.0%
! TATTGGGAGAGTCAATTTTG+GGG + chr4_1:44760299-44760318 Msa0549540:intron 35.0%
!! TGGTGATGATATTTTCCACT+TGG - chr4_1:44760389-44760408 None:intergenic 35.0%
ATATGCATTGAAAACCATCC+GGG + chr4_1:44760434-44760453 Msa0549540:intron 35.0%
TGTAGGGTTTCATAGAGTTA+AGG + chr4_1:44760467-44760486 Msa0549540:intron 35.0%
GTAGGGTTTCATAGAGTTAA+GGG + chr4_1:44760468-44760487 Msa0549540:intron 35.0%
!!! ATTTTAGAGCTTCTTCTTGG+AGG + chr4_1:44760623-44760642 Msa0549540:intron 35.0%
GAAAGAGAAACAGGATTCAT+AGG - chr4_1:44760690-44760709 None:intergenic 35.0%
TCATCAGAAGAAAGAGAAAC+AGG - chr4_1:44760699-44760718 None:intergenic 35.0%
GTTTCTCTTTCTTCTGATGA+TGG + chr4_1:44760699-44760718 Msa0549540:intron 35.0%
! CCCAATTTTCTCTAGATTTC+TGG + chr4_1:44760764-44760783 Msa0549540:intron 35.0%
!!! GTTGGAGATCTTTTTCAATG+AGG + chr4_1:44760830-44760849 Msa0549540:intron 35.0%
! TCTCTATGTGCCTTTTTCTT+TGG + chr4_1:44760908-44760927 Msa0549540:intron 35.0%
CTCTAATCATAATACCATCG+TGG - chr4_1:44760995-44761014 None:intergenic 35.0%
CACGATGGTATTATGATTAG+AGG + chr4_1:44760993-44761012 Msa0549540:intron 35.0%
GTTACAATCGAGCATAAAGT+TGG + chr4_1:44761302-44761321 Msa0549540:intron 35.0%
GTTAGTGAGATAGTTCCAAA+AGG + chr4_1:44761437-44761456 Msa0549540:intron 35.0%
AGACTAGTGTATTTGCACAA+AGG + chr4_1:44761807-44761826 Msa0549540:intron 35.0%
ACATGGTATTGTGAATGATG+TGG + chr4_1:44762125-44762144 Msa0549540:intron 35.0%
!! TAATGTTACACCTTTTGGGT+TGG + chr4_1:44762173-44762192 Msa0549540:intron 35.0%
!!! AATGTTACACCTTTTGGGTT+GGG + chr4_1:44762174-44762193 Msa0549540:intron 35.0%
! GTTAGTAGTTAGTTTGGTAG+AGG - chr4_1:44762260-44762279 None:intergenic 35.0%
!!! AGCTTTTTGGTTGTATGATC+AGG + chr4_1:44762326-44762345 Msa0549540:intron 35.0%
ATGTATAGTTTCTCAACACC+TGG + chr4_1:44762424-44762443 Msa0549540:intron 35.0%
GATTCTCATTTACTAAAGCC+AGG - chr4_1:44762445-44762464 None:intergenic 35.0%
TTGTGCCCATAGATAGATTA+AGG + chr4_1:44762485-44762504 Msa0549540:intron 35.0%
TGTGCCCATAGATAGATTAA+GGG + chr4_1:44762486-44762505 Msa0549540:intron 35.0%
CAAGCCCTTAATCTATCTAT+GGG - chr4_1:44762493-44762512 None:intergenic 35.0%
ACAAGCCCTTAATCTATCTA+TGG - chr4_1:44762494-44762513 None:intergenic 35.0%
! GATAGATTAAGGGCTTGTTT+AGG + chr4_1:44762496-44762515 Msa0549540:intron 35.0%
ACATTGCTTGAAAGAGGTTA+CGG + chr4_1:44762552-44762571 Msa0549540:intron 35.0%
!! TTTTTCTTTAGGGGGTTTTC+TGG + chr4_1:44762768-44762787 Msa0549540:intron 35.0%
CAAGCCTTCATATATTTGAC+TGG + chr4_1:44762850-44762869 Msa0549540:intron 35.0%
TATTGGACAAGTTGTGTCAA+AGG + chr4_1:44762929-44762948 Msa0549540:CDS 35.0%
!!! ATTTTTGGCATGGGCTTATA+CGG + chr4_1:44763238-44763257 Msa0549540:CDS 35.0%
AAAGAGAGAGGATCCTTTAA+GGG - chr4_1:44763314-44763333 None:intergenic 35.0%
!! TATTGTCTCCTTTTCAGGAA+AGG + chr4_1:44763484-44763503 Msa0549540:intron 35.0%
!! GAACTGATTTTCATCCACTT+AGG - chr4_1:44763510-44763529 None:intergenic 35.0%
AATGTTTGAGAGGAGCAAAA+TGG + chr4_1:44763587-44763606 Msa0549540:CDS 35.0%
ACTTAGTAAATCCAATCCTG+TGG - chr4_1:44763622-44763641 None:intergenic 35.0%
CTTGCTTATGCAGATTATGA+AGG - chr4_1:44763686-44763705 None:intergenic 35.0%
CTGTTGCTACTAAATACTGA+TGG - chr4_1:44763837-44763856 None:intergenic 35.0%
! AAAGTACTCAACAACTCCAT+TGG + chr4_1:44763997-44764016 Msa0549540:three_prime_UTR 35.0%
!! AGGTGATGGAAAATTGAAGA+AGG - chr4_1:44764046-44764065 None:intergenic 35.0%
! ATTCTAGAAACAAGTCATGC+AGG - chr4_1:44764066-44764085 None:intergenic 35.0%
CTAAGACATCAAAACTAGTG+TGG - chr4_1:44764092-44764111 None:intergenic 35.0%
!!! GCTTGGTAATCCTTTTTTCT+TGG + chr4_1:44764168-44764187 Msa0549540:three_prime_UTR 35.0%
GTGAAGAGAATAAGGTGTAG+AGG - chr4_1:44757272-44757291 None:intergenic 40.0%
! CGGTTGATGTGAAGAGAATA+AGG - chr4_1:44757280-44757299 None:intergenic 40.0%
ATACCGAGTCTTCCATTGAA+AGG + chr4_1:44757473-44757492 Msa0549540:CDS 40.0%
TACCGAGTCTTCCATTGAAA+GGG + chr4_1:44757474-44757493 Msa0549540:CDS 40.0%
TACCCTTTCAATGGAAGACT+CGG - chr4_1:44757479-44757498 None:intergenic 40.0%
! CACTATCCTCTAAGAATCGA+AGG - chr4_1:44757611-44757630 None:intergenic 40.0%
TTGTTGAAGACTGATGCTTC+AGG - chr4_1:44757763-44757782 None:intergenic 40.0%
! GAAGCATCAGTCTTCAACAA+AGG + chr4_1:44757763-44757782 Msa0549540:intron 40.0%
! TATCTGATGTTGGTCTATCG+CGG - chr4_1:44757816-44757835 None:intergenic 40.0%
TATCTTGGATGAGAACAGCA+TGG + chr4_1:44757929-44757948 Msa0549540:intron 40.0%
CTCGCTATCAACCTTATTGT+CGG - chr4_1:44757976-44757995 None:intergenic 40.0%
TTTCAATGGCCAAAGAGATG+GGG - chr4_1:44758032-44758051 None:intergenic 40.0%
CTTTCAATGGCCAAAGAGAT+GGG - chr4_1:44758033-44758052 None:intergenic 40.0%
TCTTTCAATGGCCAAAGAGA+TGG - chr4_1:44758034-44758053 None:intergenic 40.0%
AATGTTGACGGGAGTTGTAT+TGG - chr4_1:44758186-44758205 None:intergenic 40.0%
TTTCTTTGCTTCTGTCTGTG+AGG - chr4_1:44758454-44758473 None:intergenic 40.0%
! TCGTGATTGCAGATTTTCGA+GGG - chr4_1:44758511-44758530 None:intergenic 40.0%
! TTCGTGATTGCAGATTTTCG+AGG - chr4_1:44758512-44758531 None:intergenic 40.0%
!! AAAGAGTGGGAAGAGCATTA+TGG + chr4_1:44758613-44758632 Msa0549540:intron 40.0%
CAAATCCAAGACCAAGAGAA+CGG + chr4_1:44758684-44758703 Msa0549540:intron 40.0%
GTTGGTTGCAGAATCTGATT+CGG + chr4_1:44758710-44758729 Msa0549540:intron 40.0%
TTGGTTGCAGAATCTGATTC+GGG + chr4_1:44758711-44758730 Msa0549540:intron 40.0%
GGAGTATATTCCACCAAAAG+CGG - chr4_1:44758759-44758778 None:intergenic 40.0%
AAGAGTGGTGTAAAGAGCTA+GGG + chr4_1:44758869-44758888 Msa0549540:intron 40.0%
GTGTCGTGAATGTCTATAAC+AGG + chr4_1:44758936-44758955 Msa0549540:intron 40.0%
! TGGAATGATTTTGGGCTTCT+CGG - chr4_1:44758972-44758991 None:intergenic 40.0%
!!! CCTCGTTTTGGTTCAATTAC+TGG - chr4_1:44758992-44759011 None:intergenic 40.0%
CCAGTAATTGAACCAAAACG+AGG + chr4_1:44758989-44759008 Msa0549540:intron 40.0%
!! TGGTAAATTGGTTTGGGACT+TGG - chr4_1:44759186-44759205 None:intergenic 40.0%
GTCTGCTTGGTAAATTGGTT+TGG - chr4_1:44759193-44759212 None:intergenic 40.0%
! ATTTCAAAGCCGAAGCATCT+TGG - chr4_1:44759254-44759273 None:intergenic 40.0%
TTTATTTGGAGAGGCCCTAA+TGG - chr4_1:44759308-44759327 None:intergenic 40.0%
CTGCATGTAATAAGCTGGTA+TGG + chr4_1:44759382-44759401 Msa0549540:intron 40.0%
TGGTATGGAAGATAGAACAG+AGG + chr4_1:44759397-44759416 Msa0549540:intron 40.0%
AATAGGCTCCTTAACAAACC+CGG - chr4_1:44759440-44759459 None:intergenic 40.0%
GAATGGCTTCTTGGAAGAAT+AGG - chr4_1:44759457-44759476 None:intergenic 40.0%
ATTCTTCCAAGAAGCCATTC+TGG + chr4_1:44759457-44759476 Msa0549540:intron 40.0%
CGAGAAAATGCAAACCAGAA+TGG - chr4_1:44759474-44759493 None:intergenic 40.0%
GAAATTGAAGTCGCTTCTCT+TGG + chr4_1:44759499-44759518 Msa0549540:intron 40.0%
TACCTGAAGAGTAGAAAGCA+CGG + chr4_1:44759621-44759640 Msa0549540:intron 40.0%
GATATCTCACCTTCTCTTTG+CGG - chr4_1:44759756-44759775 None:intergenic 40.0%
AAGAGAAGGTGAGATATCTG+AGG + chr4_1:44759758-44759777 Msa0549540:intron 40.0%
AGAGAAGGTGAGATATCTGA+GGG + chr4_1:44759759-44759778 Msa0549540:intron 40.0%
ATAAAGAGATAGGGGGATAG+AGG + chr4_1:44759866-44759885 Msa0549540:intron 40.0%
TAAAGAGATAGGGGGATAGA+GGG + chr4_1:44759867-44759886 Msa0549540:intron 40.0%
ACAATGCATGATGAGCTTGA+TGG + chr4_1:44759973-44759992 Msa0549540:intron 40.0%
CTGGAAAGCCAAAATCATGA+AGG + chr4_1:44760002-44760021 Msa0549540:intron 40.0%
AAAGCCAAAATCATGAAGGC+AGG + chr4_1:44760006-44760025 Msa0549540:intron 40.0%
CGGAGAACCAAGAAGAAAAA+GGG - chr4_1:44760097-44760116 None:intergenic 40.0%
!! GGTATTGGGAGAGTCAATTT+TGG + chr4_1:44760297-44760316 Msa0549540:intron 40.0%
!! AGAGTCAATTTTGGGGATGA+GGG + chr4_1:44760306-44760325 Msa0549540:intron 40.0%
CTGTATCAAAGTAGCCAGTT+TGG + chr4_1:44760350-44760369 Msa0549540:intron 40.0%
! AAAGTAGCCAGTTTGGAATG+CGG + chr4_1:44760357-44760376 Msa0549540:intron 40.0%
CAAAACCGGCATTACAATGA+GGG - chr4_1:44760568-44760587 None:intergenic 40.0%
!!! CTTTTTCAATGAGGGAGTGA+CGG + chr4_1:44760839-44760858 Msa0549540:intron 40.0%
! GAAAAAGGCACATAGAGAAG+AGG - chr4_1:44760906-44760925 None:intergenic 40.0%
CTTCAAAACGAAAGGGTCTA+GGG + chr4_1:44761070-44761089 Msa0549540:intron 40.0%
ATCATAATCCTCTCCTTCTC+AGG - chr4_1:44761122-44761141 None:intergenic 40.0%
CCTTTGTTGAAGTTCTTTGC+AGG - chr4_1:44761155-44761174 None:intergenic 40.0%
CCTGCAAAGAACTTCAACAA+AGG + chr4_1:44761152-44761171 Msa0549540:intron 40.0%
AGAACTTCAACAAAGGCTTC+AGG + chr4_1:44761159-44761178 Msa0549540:intron 40.0%
GAACTTCAACAAAGGCTTCA+GGG + chr4_1:44761160-44761179 Msa0549540:intron 40.0%
TGGATCTTACTACAACAGGA+GGG - chr4_1:44761278-44761297 None:intergenic 40.0%
CTTCTGGATCTTACTACAAC+AGG - chr4_1:44761282-44761301 None:intergenic 40.0%
CTGTTGTAGTAAGATCCAGA+AGG + chr4_1:44761280-44761299 Msa0549540:intron 40.0%
TATGCTCGATTGTAACCTTC+TGG - chr4_1:44761298-44761317 None:intergenic 40.0%
GAGCATAAAGTTGGAGAAGT+GGG + chr4_1:44761311-44761330 Msa0549540:intron 40.0%
CTTCTTCCTAGTGAACAAAG+AGG - chr4_1:44761363-44761382 None:intergenic 40.0%
TCCAATTAACATCCAAGAGC+CGG + chr4_1:44761398-44761417 Msa0549540:intron 40.0%
AACCTCAACCAAGCTATTAC+CGG - chr4_1:44761420-44761439 None:intergenic 40.0%
GTGAGATAGTTCCAAAAGGT+AGG + chr4_1:44761441-44761460 Msa0549540:intron 40.0%
GATAGTTCCAAAAGGTAGGA+CGG + chr4_1:44761445-44761464 Msa0549540:intron 40.0%
AAGTAGAAATTGCACCTCCA+AGG + chr4_1:44761502-44761521 Msa0549540:intron 40.0%
! ATAACCTTCACCATTAGCCT+TGG - chr4_1:44761522-44761541 None:intergenic 40.0%
AAGGCTAATGGTGAAGGTTA+TGG + chr4_1:44761521-44761540 Msa0549540:intron 40.0%
AGAGGGAGAAAAATCGTTAG+CGG - chr4_1:44762242-44762261 None:intergenic 40.0%
! CTGCTTCTAGTTGAAGCAAT+TGG + chr4_1:44762974-44762993 Msa0549540:CDS 40.0%
CTTCCAAATCATGAGACAGA+GGG + chr4_1:44763092-44763111 Msa0549540:intron 40.0%
CAAAGAGAGAGGATCCTTTA+AGG - chr4_1:44763315-44763334 None:intergenic 40.0%
CTTAAAGGATCCTCTCTCTT+TGG + chr4_1:44763313-44763332 Msa0549540:CDS 40.0%
!! CTTTGGAATGTTCGCTTTGA+AGG + chr4_1:44763330-44763349 Msa0549540:CDS 40.0%
ATCATAATCGTGCCTTTCGA+AGG + chr4_1:44763355-44763374 Msa0549540:intron 40.0%
AAAATGGTAGTCATTGCCAC+AGG + chr4_1:44763603-44763622 Msa0549540:CDS 40.0%
GTAAAGTAAGAGGGAAACCA+AGG + chr4_1:44763937-44763956 Msa0549540:three_prime_UTR 40.0%
AAATCAAACTGTGGTAGCCT+TGG - chr4_1:44763957-44763976 None:intergenic 40.0%
!! CTACCACAGTTTGATTTGTG+AGG + chr4_1:44763960-44763979 Msa0549540:three_prime_UTR 40.0%
AAGCCTCACAAATCAAACTG+TGG - chr4_1:44763966-44763985 None:intergenic 40.0%
GGTTCGAAACATGTACAAGA+GGG + chr4_1:44764242-44764261 Msa0549540:three_prime_UTR 40.0%
GTTCGAAACATGTACAAGAG+GGG + chr4_1:44764243-44764262 Msa0549540:three_prime_UTR 40.0%
TTCGAAACATGTACAAGAGG+GGG + chr4_1:44764244-44764263 Msa0549540:three_prime_UTR 40.0%
GATGGGGAAGATGTGATGAA+CGG - chr4_1:44757300-44757319 None:intergenic 45.0%
! GGCACACTTTGTTGTGATGA+TGG - chr4_1:44757376-44757395 None:intergenic 45.0%
TAGTTAAAGGCAGGCTCAGT+TGG - chr4_1:44757406-44757425 None:intergenic 45.0%
CTAATGGCAACCCACTTGTT+AGG + chr4_1:44757440-44757459 Msa0549540:CDS 45.0%
AGAAAAGCAGCTAAGCTCTC+AGG + chr4_1:44757728-44757747 Msa0549540:intron 45.0%
AGACTGATGCTTCAGGAACT+TGG - chr4_1:44757756-44757775 None:intergenic 45.0%
CAGTCTTCAACAAAGGAAGC+AGG + chr4_1:44757770-44757789 Msa0549540:intron 45.0%
AACAAAGGAAGCAGGTCATG+AGG + chr4_1:44757778-44757797 Msa0549540:intron 45.0%
ACAAAGGAAGCAGGTCATGA+GGG + chr4_1:44757779-44757798 Msa0549540:intron 45.0%
!! CAAGGAGCACTATCTGATGT+TGG - chr4_1:44757826-44757845 None:intergenic 45.0%
GCTGATTATCTTGCGAAGCA+AGG - chr4_1:44757844-44757863 None:intergenic 45.0%
CAGCGCAATTATTGCCTTCT+CGG + chr4_1:44757860-44757879 Msa0549540:intron 45.0%
GCAATTATTGCCTTCTCGGA+GGG + chr4_1:44757864-44757883 Msa0549540:intron 45.0%
TTATTGTCGGTAACCCTTCG+AGG - chr4_1:44757963-44757982 None:intergenic 45.0%
TCGAAGGGTTACCGACAATA+AGG + chr4_1:44757962-44757981 Msa0549540:intron 45.0%
!! CGACAATAAGGTTGATAGCG+AGG + chr4_1:44757974-44757993 Msa0549540:intron 45.0%
!! ACCAGAGCTGGTTTGTTACT+CGG - chr4_1:44758007-44758026 None:intergenic 45.0%
TGGAGGATGTCTGAAGAAGA+TGG + chr4_1:44758081-44758100 Msa0549540:intron 45.0%
AGCTCAGTCCATCACTTTCT+CGG - chr4_1:44758403-44758422 None:intergenic 45.0%
CAGACAGAAGCAAAGAAAGC+TGG + chr4_1:44758456-44758475 Msa0549540:intron 45.0%
!! GCAGATTTTCGAGGGACATT+TGG - chr4_1:44758503-44758522 None:intergenic 45.0%
GAGAAGGAGCAATATTCCTG+TGG + chr4_1:44758580-44758599 Msa0549540:intron 45.0%
TGGTGAAGAAGCGAAAGAGT+GGG + chr4_1:44758600-44758619 Msa0549540:intron 45.0%
!! CGTTCTCTTGGTCTTGGATT+TGG - chr4_1:44758686-44758705 None:intergenic 45.0%
CAGTTGAGGATGCCTTTGTT+TGG - chr4_1:44758797-44758816 None:intergenic 45.0%
ACGTAATCCTGTACTGTCTG+AGG + chr4_1:44758846-44758865 Msa0549540:intron 45.0%
GAAGAGTGGTGTAAAGAGCT+AGG + chr4_1:44758868-44758887 Msa0549540:intron 45.0%
TGAGAACATCCTTGACTGTG+AGG + chr4_1:44758910-44758929 Msa0549540:intron 45.0%
! GGAATGATTTTGGGCTTCTC+GGG - chr4_1:44758971-44758990 None:intergenic 45.0%
GAACCAAAACGAGGATGAAC+CGG + chr4_1:44758998-44759017 Msa0549540:intron 45.0%
! AAAGTACCAACTCTTCCACG+TGG - chr4_1:44759082-44759101 None:intergenic 45.0%
ATAGGCTCCTTAACAAACCC+GGG - chr4_1:44759439-44759458 None:intergenic 45.0%
TGCAAACCAGAATGGCTTCT+TGG - chr4_1:44759466-44759485 None:intergenic 45.0%
TTGGGATTCCCGATCCTTAA+GGG - chr4_1:44759530-44759549 None:intergenic 45.0%
! ACCTGAAGAGTAGAAAGCAC+GGG + chr4_1:44759622-44759641 Msa0549540:intron 45.0%
CTTGACTGAACCGATCAAAG+AGG + chr4_1:44759675-44759694 Msa0549540:intron 45.0%
CTTGTGGAGGACAAACGAAT+AGG + chr4_1:44759782-44759801 Msa0549540:intron 45.0%
CCATGTGTGGGTTTGAAAGA+GGG + chr4_1:44759905-44759924 Msa0549540:intron 45.0%
CGTCCACCTTCACTATCTTA+TGG - chr4_1:44759946-44759965 None:intergenic 45.0%
ATGCATGATGAGCTTGATGG+TGG + chr4_1:44759976-44759995 Msa0549540:intron 45.0%
! AGCTCCTGCCTTCATGATTT+TGG - chr4_1:44760013-44760032 None:intergenic 45.0%
GCGGAGAACCAAGAAGAAAA+AGG - chr4_1:44760098-44760117 None:intergenic 45.0%
! AAGCAGTTTTCTGCCATGCA+GGG - chr4_1:44760167-44760186 None:intergenic 45.0%
! AAAGCAGTTTTCTGCCATGC+AGG - chr4_1:44760168-44760187 None:intergenic 45.0%
TGCATGGCAGAAAACTGCTT+TGG + chr4_1:44760167-44760186 Msa0549540:intron 45.0%
AGGTCCTTGTTCATCGTCTT+AGG - chr4_1:44760222-44760241 None:intergenic 45.0%
!! GAGAGTCAATTTTGGGGATG+AGG + chr4_1:44760305-44760324 Msa0549540:intron 45.0%
!! TTTTGGGGATGAGGGTAATG+AGG + chr4_1:44760314-44760333 Msa0549540:intron 45.0%
TTTGGGGATGAGGGTAATGA+GGG + chr4_1:44760315-44760334 Msa0549540:intron 45.0%
ATGAAACCCTACAAATCGCC+AGG - chr4_1:44760460-44760479 None:intergenic 45.0%
TTTACCCTCCTCGTCAATGA+TGG + chr4_1:44760534-44760553 Msa0549540:intron 45.0%
TTACCCTCCTCGTCAATGAT+GGG + chr4_1:44760535-44760554 Msa0549540:intron 45.0%
GATGACCCTCATTGTAATGC+CGG + chr4_1:44760560-44760579 Msa0549540:intron 45.0%
CCAAAACCGGCATTACAATG+AGG - chr4_1:44760569-44760588 None:intergenic 45.0%
!!! CCTCATTGTAATGCCGGTTT+TGG + chr4_1:44760566-44760585 Msa0549540:intron 45.0%
!!! CATTGTAATGCCGGTTTTGG+TGG + chr4_1:44760569-44760588 Msa0549540:intron 45.0%
TAGAGCTTCTTCTTGGAGGA+TGG + chr4_1:44760627-44760646 Msa0549540:intron 45.0%
! TTCTTGGAGGATGGTAGTGT+CGG + chr4_1:44760636-44760655 Msa0549540:intron 45.0%
TTCAGCTTCCGAATGGTCAA+TGG - chr4_1:44760666-44760685 None:intergenic 45.0%
!! TTCTGATGATGGTTTGAGCG+TGG + chr4_1:44760710-44760729 Msa0549540:intron 45.0%
CACATAGAGAAGAGGCTCAA+AGG - chr4_1:44760898-44760917 None:intergenic 45.0%
AACTTTATTGAGCGCCACGA+TGG + chr4_1:44760978-44760997 Msa0549540:intron 45.0%
! CCATGAGGAGTATGCAGATT+TGG - chr4_1:44761037-44761056 None:intergenic 45.0%
CCAAATCTGCATACTCCTCA+TGG + chr4_1:44761034-44761053 Msa0549540:intron 45.0%
ATACTCCTCATGGTCAATCC+AGG + chr4_1:44761044-44761063 Msa0549540:intron 45.0%
CAGGCAGCTTCAAAACGAAA+GGG + chr4_1:44761063-44761082 Msa0549540:intron 45.0%
GCTTCAAAACGAAAGGGTCT+AGG + chr4_1:44761069-44761088 Msa0549540:intron 45.0%
AATCCTCTCCTTCTCAGGTT+TGG - chr4_1:44761117-44761136 None:intergenic 45.0%
TTCAACAAAGGCTTCAGGGA+AGG + chr4_1:44761164-44761183 Msa0549540:intron 45.0%
TGCGAAGGCCATTATGATTG+CGG + chr4_1:44761238-44761257 Msa0549540:intron 45.0%
ATCTTACTACAACAGGAGGG+AGG - chr4_1:44761275-44761294 None:intergenic 45.0%
CTGGATCTTACTACAACAGG+AGG - chr4_1:44761279-44761298 None:intergenic 45.0%
CGAGCATAAAGTTGGAGAAG+TGG + chr4_1:44761310-44761329 Msa0549540:intron 45.0%
CTTCCTAGTGAACAAAGAGG+AGG - chr4_1:44761360-44761379 None:intergenic 45.0%
! ACCGGCTCTTGGATGTTAAT+TGG - chr4_1:44761402-44761421 None:intergenic 45.0%
AATTGCACCTCCAAGGCTAA+TGG + chr4_1:44761509-44761528 Msa0549540:intron 45.0%
!!! TTTTTGGCACTGCTTGCTGT+TGG + chr4_1:44762366-44762385 Msa0549540:CDS 45.0%
TGTGTCAAAGGAGTTCACAC+TGG + chr4_1:44762941-44762960 Msa0549540:CDS 45.0%
AGGAGTTCACACTGGAAAGA+TGG + chr4_1:44762949-44762968 Msa0549540:CDS 45.0%
! CCTCTGTCTCATGATTTGGA+AGG - chr4_1:44763094-44763113 None:intergenic 45.0%
CCTTCCAAATCATGAGACAG+AGG + chr4_1:44763091-44763110 Msa0549540:intron 45.0%
ACTCCCTCTGTCTCATGATT+TGG - chr4_1:44763098-44763117 None:intergenic 45.0%
GCTGCAGATGTTTATCTTGC+TGG + chr4_1:44763202-44763221 Msa0549540:intron 45.0%
ACAGAAGGTTGCACATCATG+AGG - chr4_1:44763283-44763302 None:intergenic 45.0%
AGCGAACATTCCAAAGAGAG+AGG - chr4_1:44763326-44763345 None:intergenic 45.0%
AAATCAACGTCATGAGGGCA+CGG - chr4_1:44763396-44763415 None:intergenic 45.0%
CACTTAGGCCTTTCCTGAAA+AGG - chr4_1:44763495-44763514 None:intergenic 45.0%
!! CTTTTCAGGAAAGGCCTAAG+TGG + chr4_1:44763493-44763512 Msa0549540:intron 45.0%
TTAAACCTTGAGGAGGCCAA+TGG - chr4_1:44764016-44764035 None:intergenic 45.0%
!! TTCGGCTTTAAACCTTGAGG+AGG - chr4_1:44764023-44764042 None:intergenic 45.0%
!! AGGTTCGGCTTTAAACCTTG+AGG - chr4_1:44764026-44764045 None:intergenic 45.0%
GAAACAAGTCATGCAGGTGA+TGG - chr4_1:44764060-44764079 None:intergenic 45.0%
GGGTTCGAAACATGTACAAG+AGG + chr4_1:44764241-44764260 Msa0549540:three_prime_UTR 45.0%
CACAACAAAGTGTGCCATCC+AGG + chr4_1:44757380-44757399 Msa0549540:CDS 50.0%
! TGGCAACCCACTTGTTAGGA+TGG + chr4_1:44757444-44757463 Msa0549540:CDS 50.0%
CAAAGGAAGCAGGTCATGAG+GGG + chr4_1:44757780-44757799 Msa0549540:intron 50.0%
AAAGGAAGCAGGTCATGAGG+GGG + chr4_1:44757781-44757800 Msa0549540:intron 50.0%
CGCAATTATTGCCTTCTCGG+AGG + chr4_1:44757863-44757882 Msa0549540:intron 50.0%
GGATGAGAACAGCATGGACA+TGG + chr4_1:44757935-44757954 Msa0549540:intron 50.0%
CATGGACATGGAACCTCGAA+GGG + chr4_1:44757947-44757966 Msa0549540:intron 50.0%
TCCGAGTAACAAACCAGCTC+TGG + chr4_1:44758003-44758022 Msa0549540:intron 50.0%
CTCTGGTATCCCCATCTCTT+TGG + chr4_1:44758020-44758039 Msa0549540:intron 50.0%
GAGCTGACAGCCATCTATCA+TGG - chr4_1:44758057-44758076 None:intergenic 50.0%
GGATGTCTGAAGAAGATGGC+AGG + chr4_1:44758085-44758104 Msa0549540:intron 50.0%
!!! ACGCGGGGTTTTTTCTAGCA+GGG - chr4_1:44758122-44758141 None:intergenic 50.0%
!!! AACGCGGGGTTTTTTCTAGC+AGG - chr4_1:44758123-44758142 None:intergenic 50.0%
ACCCCGCGTTGTTACGAATA+AGG + chr4_1:44758133-44758152 Msa0549540:intron 50.0%
! GCCTTATTCGTAACAACGCG+GGG - chr4_1:44758137-44758156 None:intergenic 50.0%
!! GGCCTTATTCGTAACAACGC+GGG - chr4_1:44758138-44758157 None:intergenic 50.0%
!! CGGCCTTATTCGTAACAACG+CGG - chr4_1:44758139-44758158 None:intergenic 50.0%
! CTATGGAAAGGCATGTCAGG+TGG - chr4_1:44758239-44758258 None:intergenic 50.0%
CACCTGACATGCCTTTCCAT+AGG + chr4_1:44758237-44758256 Msa0549540:intron 50.0%
! CTCCTATGGAAAGGCATGTC+AGG - chr4_1:44758242-44758261 None:intergenic 50.0%
CTTTCCATAGGAGCAACCTG+CGG + chr4_1:44758249-44758268 Msa0549540:intron 50.0%
TCACTTTCTCGGCTGTCTTG+TGG - chr4_1:44758392-44758411 None:intergenic 50.0%
CAAGACAGCCGAGAAAGTGA+TGG + chr4_1:44758392-44758411 Msa0549540:intron 50.0%
TGGCTTAAGGAGCGAACTCA+GGG - chr4_1:44758426-44758445 None:intergenic 50.0%
TTGGCTTAAGGAGCGAACTC+AGG - chr4_1:44758427-44758446 None:intergenic 50.0%
!! CTGTGAGGCTGATTGGCTTA+AGG - chr4_1:44758439-44758458 None:intergenic 50.0%
CTTCTGTCTGTGAGGCTGAT+TGG - chr4_1:44758446-44758465 None:intergenic 50.0%
! AGGGACATTTGGCTTCGCTT+AGG - chr4_1:44758492-44758511 None:intergenic 50.0%
GTGATCTTCACAACGAGTGC+AGG + chr4_1:44758554-44758573 Msa0549540:intron 50.0%
TCTTCACAACGAGTGCAGGT+AGG + chr4_1:44758558-44758577 Msa0549540:intron 50.0%
CTCTTTCGCTTCTTCACCAC+AGG - chr4_1:44758599-44758618 None:intergenic 50.0%
GTGGTGAAGAAGCGAAAGAG+TGG + chr4_1:44758599-44758618 Msa0549540:intron 50.0%
ACTCACCGTTCTCTTGGTCT+TGG - chr4_1:44758692-44758711 None:intergenic 50.0%
AGACCAAGAGAACGGTGAGT+TGG + chr4_1:44758692-44758711 Msa0549540:intron 50.0%
CAACCAACTCACCGTTCTCT+TGG - chr4_1:44758698-44758717 None:intergenic 50.0%
CACTCTTCCTCAGACAGTAC+AGG - chr4_1:44758856-44758875 None:intergenic 50.0%
CTGTACTGTCTGAGGAAGAG+TGG + chr4_1:44758854-44758873 Msa0549540:intron 50.0%
! GTTCCGGTTCATCCTCGTTT+TGG - chr4_1:44759004-44759023 None:intergenic 50.0%
!!! AATGGTTTTGTTTGGCGCGC+GGG - chr4_1:44759026-44759045 None:intergenic 50.0%
!!! GAATGGTTTTGTTTGGCGCG+CGG - chr4_1:44759027-44759046 None:intergenic 50.0%
CACGTGGTCTTCTATCATCC+GGG - chr4_1:44759066-44759085 None:intergenic 50.0%
CCACGTGGTCTTCTATCATC+CGG - chr4_1:44759067-44759086 None:intergenic 50.0%
AGAAGACCACGTGGAAGAGT+TGG + chr4_1:44759073-44759092 Msa0549540:intron 50.0%
GACGCGAACATTTGTCTGCT+TGG - chr4_1:44759206-44759225 None:intergenic 50.0%
CCAAGACCTCCAAGATGCTT+CGG + chr4_1:44759242-44759261 Msa0549540:intron 50.0%
! TCAAAGCCGAAGCATCTTGG+AGG - chr4_1:44759251-44759270 None:intergenic 50.0%
TGGAGAGGCCCTAATGGAAA+AGG - chr4_1:44759302-44759321 None:intergenic 50.0%
TTCTCTTGGGTCTCCCCTTA+AGG + chr4_1:44759513-44759532 Msa0549540:intron 50.0%
TTGGGTCTCCCCTTAAGGAT+CGG + chr4_1:44759518-44759537 Msa0549540:intron 50.0%
TGGGATTCCCGATCCTTAAG+GGG - chr4_1:44759529-44759548 None:intergenic 50.0%
CTTGGGATTCCCGATCCTTA+AGG - chr4_1:44759531-44759550 None:intergenic 50.0%
TCCCGTGCTTTCTACTCTTC+AGG - chr4_1:44759626-44759645 None:intergenic 50.0%
! AGAGTAGAAAGCACGGGACT+TGG + chr4_1:44759628-44759647 Msa0549540:intron 50.0%
! AGAAAGCACGGGACTTGGAA+AGG + chr4_1:44759633-44759652 Msa0549540:intron 50.0%
! GATCGGTTCAGTCAAGCTTC+AGG - chr4_1:44759671-44759690 None:intergenic 50.0%
GGACATCATCCGCAAAGAGA+AGG + chr4_1:44759744-44759763 Msa0549540:intron 50.0%
GTGAGATATCTGAGGGCTTG+TGG + chr4_1:44759766-44759785 Msa0549540:intron 50.0%
AGATATCTGAGGGCTTGTGG+AGG + chr4_1:44759769-44759788 Msa0549540:intron 50.0%
TGCGGTGCAGCATGGTAATT+GGG - chr4_1:44759810-44759829 None:intergenic 50.0%
ATGCGGTGCAGCATGGTAAT+TGG - chr4_1:44759811-44759830 None:intergenic 50.0%
ATCAACAATGCGGTGCAGCA+TGG - chr4_1:44759818-44759837 None:intergenic 50.0%
ATAGAGGGTCACCTTGTCTC+AGG + chr4_1:44759882-44759901 Msa0549540:intron 50.0%
GCCATGTGTGGGTTTGAAAG+AGG + chr4_1:44759904-44759923 Msa0549540:intron 50.0%
CCCTCTTTCAAACCCACACA+TGG - chr4_1:44759908-44759927 None:intergenic 50.0%
!! ATGAGCTTGATGGTGGAGTC+TGG + chr4_1:44759983-44760002 Msa0549540:intron 50.0%
AATCATGAAGGCAGGAGCTG+AGG + chr4_1:44760014-44760033 Msa0549540:intron 50.0%
! AGCAGTTTTCTGCCATGCAG+GGG - chr4_1:44760166-44760185 None:intergenic 50.0%
TGGCAGAAAACTGCTTTGGC+AGG + chr4_1:44760171-44760190 Msa0549540:intron 50.0%
GGCAGAAAACTGCTTTGGCA+GGG + chr4_1:44760172-44760191 Msa0549540:intron 50.0%
ACGGCCTAAGACGATGAACA+AGG + chr4_1:44760215-44760234 Msa0549540:intron 50.0%
!! GGTAATGAGGGTGTCAGCAA+TGG + chr4_1:44760327-44760346 Msa0549540:intron 50.0%
GTTAGCACCGCATTCCAAAC+TGG - chr4_1:44760367-44760386 None:intergenic 50.0%
TACCCTCCTCGTCAATGATG+GGG + chr4_1:44760536-44760555 Msa0549540:intron 50.0%
TCATCACCCCATCATTGACG+AGG - chr4_1:44760545-44760564 None:intergenic 50.0%
TCGGAGGACCATTGACCATT+CGG + chr4_1:44760655-44760674 Msa0549540:intron 50.0%
CATAGGCTTCAGCTTCCGAA+TGG - chr4_1:44760673-44760692 None:intergenic 50.0%
TTTCAATGAGGGAGTGACGG+AGG + chr4_1:44760842-44760861 Msa0549540:intron 50.0%
! TTCAATGAGGGAGTGACGGA+GGG + chr4_1:44760843-44760862 Msa0549540:intron 50.0%
! CAGATTTGGTCAGCAGAGCA+TGG - chr4_1:44761023-44761042 None:intergenic 50.0%
!!! CCTTTCGTTTTGAAGCTGCC+TGG - chr4_1:44761065-44761084 None:intergenic 50.0%
CCAGGCAGCTTCAAAACGAA+AGG + chr4_1:44761062-44761081 Msa0549540:intron 50.0%
GCTTCTTGGAGAGAATGCGA+AGG + chr4_1:44761223-44761242 Msa0549540:intron 50.0%
ACCTGGCACCGCAATCATAA+TGG - chr4_1:44761249-44761268 None:intergenic 50.0%
ACGCCTCCTCTTTGTTCACT+AGG + chr4_1:44761354-44761373 Msa0549540:intron 50.0%
TCCAAGAGCCGGTAATAGCT+TGG + chr4_1:44761409-44761428 Msa0549540:intron 50.0%
!! ACCAAGCTATTACCGGCTCT+TGG - chr4_1:44761413-44761432 None:intergenic 50.0%
AGCCGGTAATAGCTTGGTTG+AGG + chr4_1:44761415-44761434 Msa0549540:intron 50.0%
AGTTCCAAAAGGTAGGACGG+AGG + chr4_1:44761448-44761467 Msa0549540:intron 50.0%
GTTCCAAAAGGTAGGACGGA+GGG + chr4_1:44761449-44761468 Msa0549540:intron 50.0%
ACCTCCAAGGCTAATGGTGA+AGG + chr4_1:44761515-44761534 Msa0549540:intron 50.0%
!! ACCTTCACCATTAGCCTTGG+AGG - chr4_1:44761519-44761538 None:intergenic 50.0%
! GAGAGGATCCTTTAAGGGCA+CGG - chr4_1:44763309-44763328 None:intergenic 50.0%
TGGAGAGAGGATCCTTCGAA+AGG - chr4_1:44763370-44763389 None:intergenic 50.0%
GGTAGTCATTGCCACAGGAT+TGG + chr4_1:44763608-44763627 Msa0549540:CDS 50.0%
AAGGAAGCAGGTCATGAGGG+GGG + chr4_1:44757782-44757801 Msa0549540:intron 55.0%
TATTGCCTTCTCGGAGGGTG+TGG + chr4_1:44757869-44757888 Msa0549540:intron 55.0%
ATAGTCCACACCCTCCGAGA+AGG - chr4_1:44757877-44757896 None:intergenic 55.0%
GCATGGACATGGAACCTCGA+AGG + chr4_1:44757946-44757965 Msa0549540:intron 55.0%
AGAGATGGGGATACCAGAGC+TGG - chr4_1:44758019-44758038 None:intergenic 55.0%
! AATCCGACTCGAGCAGGCTT+TGG - chr4_1:44758162-44758181 None:intergenic 55.0%
! ATTGGCAATCCGACTCGAGC+AGG - chr4_1:44758168-44758187 None:intergenic 55.0%
CGCAGGTTGCTCCTATGGAA+AGG - chr4_1:44758251-44758270 None:intergenic 55.0%
CGGCGGAGAAGATAAGCTCA+AGG + chr4_1:44758269-44758288 Msa0549540:intron 55.0%
CTTTCTCGGCTGTCTTGTGG+TGG - chr4_1:44758389-44758408 None:intergenic 55.0%
CAACGAGTGCAGGTAGGAGA+AGG + chr4_1:44758564-44758583 Msa0549540:intron 55.0%
!! GAGCCACTTGTAGCCGCTTT+TGG + chr4_1:44758743-44758762 Msa0549540:intron 55.0%
CCACCAAAAGCGGCTACAAG+TGG - chr4_1:44758749-44758768 None:intergenic 55.0%
!!! CCACTTGTAGCCGCTTTTGG+TGG + chr4_1:44758746-44758765 Msa0549540:intron 55.0%
CGACACTCACCTCACAGTCA+AGG - chr4_1:44758922-44758941 None:intergenic 55.0%
! TTTTGGGCTTCTCGGGTCTC+TGG - chr4_1:44758964-44758983 None:intergenic 55.0%
CCGGATGATAGAAGACCACG+TGG + chr4_1:44759064-44759083 Msa0549540:intron 55.0%
CAAATGTTCGCGTCCCTAGC+TGG + chr4_1:44759212-44759231 Msa0549540:intron 55.0%
TCTTGGCATCCGTCCAGCTA+GGG - chr4_1:44759228-44759247 None:intergenic 55.0%
! CCGAAGCATCTTGGAGGTCT+TGG - chr4_1:44759245-44759264 None:intergenic 55.0%
CCTTAACAAACCCGGGAGAC+TGG - chr4_1:44759432-44759451 None:intergenic 55.0%
!! CCAGTCTCCCGGGTTTGTTA+AGG + chr4_1:44759429-44759448 Msa0549540:intron 55.0%
TGGGTCTCCCCTTAAGGATC+GGG + chr4_1:44759519-44759538 Msa0549540:intron 55.0%
ACCTTGTCTCAGGCCATGTG+TGG + chr4_1:44759892-44759911 Msa0549540:intron 55.0%
CCTTGTCTCAGGCCATGTGT+GGG + chr4_1:44759893-44759912 Msa0549540:intron 55.0%
!! TTATCAGAGGTGCCCCTGCA+TGG + chr4_1:44760151-44760170 Msa0549540:intron 55.0%
! GGAATGCGGTGCTAACCAAG+TGG + chr4_1:44760371-44760390 Msa0549540:intron 55.0%
CATTGAAAACCATCCGGGCC+TGG + chr4_1:44760439-44760458 Msa0549540:intron 55.0%
CACCCCATCATTGACGAGGA+GGG - chr4_1:44760541-44760560 None:intergenic 55.0%
TCACCCCATCATTGACGAGG+AGG - chr4_1:44760542-44760561 None:intergenic 55.0%
!!! GTAATGCCGGTTTTGGTGGC+TGG + chr4_1:44760573-44760592 Msa0549540:intron 55.0%
! TTGGAGGATGGTAGTGTCGG+AGG + chr4_1:44760639-44760658 Msa0549540:intron 55.0%
AGCTGCCTGGATTGACCATG+AGG - chr4_1:44761052-44761071 None:intergenic 55.0%
CCTCTCCTTCTCAGGTTTGG+TGG - chr4_1:44761114-44761133 None:intergenic 55.0%
CCACCAAACCTGAGAAGGAG+AGG + chr4_1:44761111-44761130 Msa0549540:intron 55.0%
GCCATTATGATTGCGGTGCC+AGG + chr4_1:44761245-44761264 Msa0549540:intron 55.0%
! ACACCCTCCGTCCTACCTTT+TGG - chr4_1:44761455-44761474 None:intergenic 55.0%
AAAAGGTAGGACGGAGGGTG+TGG + chr4_1:44761454-44761473 Msa0549540:intron 55.0%
!!! ACACCTTTTGGGTTGGGACG+TGG + chr4_1:44762180-44762199 Msa0549540:intron 55.0%
CTTCCACGTCCCAACCCAAA+AGG - chr4_1:44762186-44762205 None:intergenic 55.0%
!!! CTTTTGGGTTGGGACGTGGA+AGG + chr4_1:44762184-44762203 Msa0549540:intron 55.0%
!! TTGGCACTGCTTGCTGTTGG+AGG + chr4_1:44762369-44762388 Msa0549540:CDS 55.0%
!! GCTTGCTGTTGGAGGTTCCT+TGG + chr4_1:44762377-44762396 Msa0549540:CDS 55.0%
! TTAAGGGCACGGTCGACAGA+AGG - chr4_1:44763298-44763317 None:intergenic 55.0%
TCTGTCGACCGTGCCCTTAA+AGG + chr4_1:44763298-44763317 Msa0549540:CDS 55.0%
! CAACTCCATTGGCCTCCTCA+AGG + chr4_1:44764008-44764027 Msa0549540:three_prime_UTR 55.0%
AAAGGCAGGCTCAGTTGGCC+TGG - chr4_1:44757401-44757420 None:intergenic 60.0%
AGGAAGCAGGTCATGAGGGG+GGG + chr4_1:44757783-44757802 Msa0549540:intron 60.0%
AGATGGCTGTCAGCTCAGCG+TGG + chr4_1:44758061-44758080 Msa0549540:intron 60.0%
TCCATAGGAGCAACCTGCGG+CGG + chr4_1:44758252-44758271 Msa0549540:intron 60.0%
GAGCTTATCTTCTCCGCCGC+AGG - chr4_1:44758268-44758287 None:intergenic 60.0%
CGGCTGTCTTGTGGTGGTCT+TGG - chr4_1:44758383-44758402 None:intergenic 60.0%
TTTGTTTGGCGCGCGGGTTC+CGG - chr4_1:44759020-44759039 None:intergenic 60.0%
TGTTCGCGTCCCTAGCTGGA+CGG + chr4_1:44759216-44759235 Msa0549540:intron 60.0%
GTCTTGGCATCCGTCCAGCT+AGG - chr4_1:44759229-44759248 None:intergenic 60.0%
GGAAGCAAGAGCCAGTCTCC+CGG + chr4_1:44759418-44759437 Msa0549540:intron 60.0%
GAAGCAAGAGCCAGTCTCCC+GGG + chr4_1:44759419-44759438 Msa0549540:intron 60.0%
CCCACACATGGCCTGAGACA+AGG - chr4_1:44759896-44759915 None:intergenic 60.0%
TACAAATCGCCAGGCCCGGA+TGG - chr4_1:44760451-44760470 None:intergenic 60.0%
ATCCGGGCCTGGCGATTTGT+AGG + chr4_1:44760450-44760469 Msa0549540:intron 60.0%
TCCGGGCCTGGCGATTTGTA+GGG + chr4_1:44760451-44760470 Msa0549540:intron 60.0%
ACCCTACAAATCGCCAGGCC+CGG - chr4_1:44760455-44760474 None:intergenic 60.0%
!!! TGCCGGTTTTGGTGGCTGGT+AGG + chr4_1:44760577-44760596 Msa0549540:intron 60.0%
!! GCCGGTTTTGGTGGCTGGTA+GGG + chr4_1:44760578-44760597 Msa0549540:intron 60.0%
CCCCTACCAGCCACCAAAAC+CGG - chr4_1:44760582-44760601 None:intergenic 60.0%
!! CCGGTTTTGGTGGCTGGTAG+GGG + chr4_1:44760579-44760598 Msa0549540:intron 60.0%
! GTCTAGGGCCCCTTGCAAGA+GGG + chr4_1:44761085-44761104 Msa0549540:intron 60.0%
TGGTGGCCTCCCTCTTGCAA+GGG - chr4_1:44761097-44761116 None:intergenic 60.0%
! TTGGTGGCCTCCCTCTTGCA+AGG - chr4_1:44761098-44761117 None:intergenic 60.0%
GGAGGCCACCAAACCTGAGA+AGG + chr4_1:44761106-44761125 Msa0549540:intron 60.0%
CAACAGGAGGGAGGTTCACC+TGG - chr4_1:44761266-44761285 None:intergenic 60.0%
! GTAGGACGGAGGGTGTGGTT+GGG + chr4_1:44761459-44761478 Msa0549540:intron 60.0%
! TAGGACGGAGGGTGTGGTTG+GGG + chr4_1:44761460-44761479 Msa0549540:intron 60.0%
GCTGTTGGAGGTTCCTTGGC+TGG + chr4_1:44762381-44762400 Msa0549540:CDS 60.0%
! ACGTCATGAGGGCACGGTCA+TGG - chr4_1:44763390-44763409 None:intergenic 60.0%
! GCAGGCTCAGTTGGCCTGGA+TGG - chr4_1:44757397-44757416 None:intergenic 65.0%
GCAGGTCATGAGGGGGGGAA+TGG + chr4_1:44757788-44757807 Msa0549540:intron 65.0%
TGGCTGTCAGCTCAGCGTGG+AGG + chr4_1:44758064-44758083 Msa0549540:intron 65.0%
! CCGACTCGAGCAGGCTTTGG+CGG - chr4_1:44758159-44758178 None:intergenic 65.0%
CCGCCAAAGCCTGCTCGAGT+CGG + chr4_1:44758156-44758175 Msa0549540:intron 65.0%
TCCGCCGCAGGTTGCTCCTA+TGG - chr4_1:44758256-44758275 None:intergenic 65.0%
! GGCTGGTAGGGGCGCAAAAG+AGG + chr4_1:44760590-44760609 Msa0549540:intron 65.0%
! GGTCTAGGGCCCCTTGCAAG+AGG + chr4_1:44761084-44761103 Msa0549540:intron 65.0%
TAGGGCCCCTTGCAAGAGGG+AGG + chr4_1:44761088-44761107 Msa0549540:intron 65.0%
GGTGGCCTCCCTCTTGCAAG+GGG - chr4_1:44761096-44761115 None:intergenic 65.0%
! GGTAGGACGGAGGGTGTGGT+TGG + chr4_1:44761458-44761477 Msa0549540:intron 65.0%
GCAGAGGAGTGAGCCAGCCA+AGG - chr4_1:44762397-44762416 None:intergenic 65.0%
! GAGGGCACGGTCATGGAGAG+AGG - chr4_1:44763383-44763402 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44757215 44764273 44757215 ID=Msa0549540;Name=Msa0549540
chr4_1 mRNA 44757215 44764273 44757215 ID=Msa0549540-mRNA-1;Parent=Msa0549540;Name=Msa0549540-mRNA-1;_AED=0.09;_eAED=0.09;_QI=23|1|1|1|1|1|5|563|262
chr4_1 exon 44757215 44757495 44757215 ID=Msa0549540-mRNA-1:exon:11675;Parent=Msa0549540-mRNA-1
chr4_1 exon 44762348 44762425 44762348 ID=Msa0549540-mRNA-1:exon:11676;Parent=Msa0549540-mRNA-1
chr4_1 exon 44762896 44762995 44762896 ID=Msa0549540-mRNA-1:exon:11677;Parent=Msa0549540-mRNA-1
chr4_1 exon 44763209 44763351 44763209 ID=Msa0549540-mRNA-1:exon:11678;Parent=Msa0549540-mRNA-1
chr4_1 exon 44763501 44764273 44763501 ID=Msa0549540-mRNA-1:exon:11679;Parent=Msa0549540-mRNA-1
chr4_1 five_prime_UTR 44757215 44757237 44757215 ID=Msa0549540-mRNA-1:five_prime_utr;Parent=Msa0549540-mRNA-1
chr4_1 CDS 44757238 44757495 44757238 ID=Msa0549540-mRNA-1:cds;Parent=Msa0549540-mRNA-1
chr4_1 CDS 44762348 44762425 44762348 ID=Msa0549540-mRNA-1:cds;Parent=Msa0549540-mRNA-1
chr4_1 CDS 44762896 44762995 44762896 ID=Msa0549540-mRNA-1:cds;Parent=Msa0549540-mRNA-1
chr4_1 CDS 44763209 44763351 44763209 ID=Msa0549540-mRNA-1:cds;Parent=Msa0549540-mRNA-1
chr4_1 CDS 44763501 44763710 44763501 ID=Msa0549540-mRNA-1:cds;Parent=Msa0549540-mRNA-1
chr4_1 three_prime_UTR 44763711 44764273 44763711 ID=Msa0549540-mRNA-1:three_prime_utr;Parent=Msa0549540-mRNA-1
Gene Sequence

>Msa0549540

ATGGCTCTCTCTTGTTACACTTTCATCACTCCCTCTACACCTTATTCTCTTCACATCAACCGTTCATCACATCTTCCCCATCGAGTTTCTTTTACAAAAGCTTCCTTAAGCTCTTCTTCATCTGATTCAAAAGCACCATCATCACAACAAAGTGTGCCATCCAGGCCAACTGAGCCTGCCTTTAACTATGCATTCAACAACACTAATGGCAACCCACTTGTTAGGATGGTTCAAAATACCGAGTCTTCCATTGAAAGGGTAATTTTTGACTTTCGTTTTTTGGCACTGCTTGCTGTTGGAGGTTCCTTGGCTGGCTCACTCCTCTGCTTTCTAAATGGCTGTGTTTATATTGTTGAAGCATACAAAGTCTATTGGACAAGTTGTGTCAAAGGAGTTCACACTGGAAAGATGGTTCTGCTTCTAGTTGAAGCAATTGATGTTTATCTTGCTGGTACTGTTATGTTGATTTTTGGCATGGGCTTATACGGACTATTCATCAGCAACACACCTCATGATGTGCAACCTTCTGTCGACCGTGCCCTTAAAGGATCCTCTCTCTTTGGAATGTTCGCTTTGAAGGAAAGGCCTAAGTGGATGAAAATCAGTTCACTTGATGAACTGAAAACAAAAGTGGGGCATGTTATTGTAATGATTCTTCTTGTAAAAATGTTTGAGAGGAGCAAAATGGTAGTCATTGCCACAGGATTGGATTTACTAAGTTATTCAGTTTGTATCTTCTTATCATCTGCATCTTTGTATATCCTTCATAATCTGCATAAGCAAGATTAA
Protein sequence

>Msa0549540

MALSCYTFITPSTPYSLHINRSSHLPHRVSFTKASLSSSSSDSKAPSSQQSVPSRPTEPAFNYAFNNTNGNPLVRMVQNTESSIERVIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTSCVKGVHTGKMVLLLVEAIDVYLAGTVMLIFGMGLYGLFISNTPHDVQPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVVIATGLDLLSYSVCIFLSSASLYILHNLHKQD*