AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1173380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1173380 MtrunA17_Chr4g0003221 95.730 281 6 2 1 276 1 280 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1173380 AT3G15840.1 63.214 280 83 5 2 276 4 268 5.30e-126 359
Msa1173380 AT3G15840.3 62.500 280 85 5 2 276 4 268 5.08e-124 354
Msa1173380 AT3G15840.5 69.583 240 62 3 42 276 15 248 1.51e-122 350
Msa1173380 AT3G15840.2 62.143 280 83 6 2 276 4 265 1.46e-121 348
Msa1173380 AT3G15840.4 72.770 213 52 2 69 276 3 214 1.94e-115 330

Find 77 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATATTGGATTGAAATA+TGG 0.186864 8_1:-3790057 None:intergenic
CATATTTCAATCCAATATTA+AGG 0.230501 8_1:+3790058 Msa1173380:five_prime_UTR
CTTGCTCCTAGTGAAGAATT+TGG 0.251751 8_1:+3791607 Msa1173380:CDS
GGTTCACCACCGCACATAAT+TGG 0.252908 8_1:-3795362 None:intergenic
ATATTTGAATGCTGTATATA+GGG 0.271703 8_1:-3795424 None:intergenic
TATAGTAGGAAACAGATAAA+AGG 0.288727 8_1:-3789966 None:intergenic
TACTCCACTATATACTTTCA+TGG 0.299352 8_1:+3797043 Msa1173380:three_prime_UTR
ATACTATAGGGAAGAAATTA+TGG 0.304115 8_1:+3796995 Msa1173380:three_prime_UTR
CCCTTTCAATACTATACTAT+AGG 0.316700 8_1:+3796982 Msa1173380:three_prime_UTR
CATATTTGAATGCTGTATAT+AGG 0.316965 8_1:-3795425 None:intergenic
AAATTATGGTTCATAGTATA+AGG 0.317202 8_1:+3797009 Msa1173380:three_prime_UTR
TGCGAACTGAATCTTGTTCC+AGG 0.318141 8_1:+3796724 Msa1173380:CDS
ACTTGAAATTGCAGTCTATA+TGG 0.338184 8_1:-3795718 None:intergenic
GGCTTGTTCTGTAAAGGTTT+AGG 0.359246 8_1:-3795742 None:intergenic
TTGGGAAGGCTGCTGTATAC+TGG 0.369413 8_1:+3791425 Msa1173380:CDS
TCTATAACTGCAGTTGTGTC+TGG 0.373918 8_1:-3796463 None:intergenic
TTTCCTACTATATCTATCTA+TGG 0.373940 8_1:+3789977 Msa1173380:five_prime_UTR
ACCAAGATGTTACCCTTTGA+AGG 0.390463 8_1:+3790823 Msa1173380:CDS
ACCTCGTTAAAGAATTCAAT+TGG 0.407330 8_1:-3795763 None:intergenic
ATAGGTACAAGCTTCCTTCA+TGG 0.408186 8_1:+3791389 Msa1173380:intron
GAATCAGAATCCACTTCAAT+TGG 0.409503 8_1:-3796808 None:intergenic
TCCTTCAAAGGGTAACATCT+TGG 0.415937 8_1:-3790824 None:intergenic
ATTTACAAATGGAGTGGATT+GGG 0.417672 8_1:+3795690 Msa1173380:CDS
CATTTACAAATGGAGTGGAT+TGG 0.427350 8_1:+3795689 Msa1173380:CDS
ATTGGTAATTTATCAAAAGA+AGG 0.427374 8_1:+3796499 Msa1173380:CDS
AGTAGGAGCAACACCGTTAG+TGG 0.435161 8_1:-3791452 None:intergenic
TTCATATGTCTTTCCTTCAA+AGG 0.436295 8_1:-3790836 None:intergenic
TCATGGGCTATGTTTGAACT+TGG 0.438144 8_1:+3791406 Msa1173380:CDS
TCAATTGGCTTGTTCTGTAA+AGG 0.440223 8_1:-3795748 None:intergenic
CCTTTCAATACTATACTATA+GGG 0.446149 8_1:+3796983 Msa1173380:three_prime_UTR
TCCTTTCTGAGCATAGCTCT+TGG 0.448560 8_1:-3795383 None:intergenic
TCATATGTCTTTCCTTCAAA+GGG 0.449365 8_1:-3790835 None:intergenic
TTGGTAATTTATCAAAAGAA+GGG 0.469450 8_1:+3796500 Msa1173380:CDS
CCTATAGTATAGTATTGAAA+GGG 0.469525 8_1:-3796982 None:intergenic
TAGGTACAAGCTTCCTTCAT+GGG 0.479108 8_1:+3791390 Msa1173380:intron
CATAGCATAACAAACACGTT+TGG 0.480434 8_1:+3790175 Msa1173380:CDS
GGAGCAAGTTGAGCTGCAGC+TGG 0.485205 8_1:-3791592 None:intergenic
AATGCCATGAAAGTATATAG+TGG 0.494424 8_1:-3797047 None:intergenic
GGATCGTACAAGGGCGAGCT+AGG 0.495175 8_1:-3796757 None:intergenic
AATATCATACTTACTGAAGT+AGG 0.495204 8_1:-3791469 None:intergenic
CCATCATCCACATTGGCCAT+TGG 0.506760 8_1:-3796778 None:intergenic
TGTCCATAGATAGATATAGT+AGG 0.510926 8_1:-3789980 None:intergenic
TAGTAGTTAGCACTGAACTT+TGG 0.510984 8_1:+3796949 Msa1173380:three_prime_UTR
CCCTATAGTATAGTATTGAA+AGG 0.512156 8_1:-3796983 None:intergenic
GCAGAGGAACTAAGTAAAGA+AGG 0.513099 8_1:+3796418 Msa1173380:CDS
ATTGGCCATTGGATCGTACA+AGG 0.518905 8_1:-3796767 None:intergenic
GGCTATGTTTGAACTTGGGA+AGG 0.522989 8_1:+3791411 Msa1173380:CDS
GCAATTCCAAATTCTTCACT+AGG 0.523402 8_1:-3791613 None:intergenic
CCAATGGCCAATGTGGATGA+TGG 0.523811 8_1:+3796778 Msa1173380:CDS
TTTCTCATTTACAAATGGAG+TGG 0.538464 8_1:+3795684 Msa1173380:CDS
CATGGGCTATGTTTGAACTT+GGG 0.542521 8_1:+3791407 Msa1173380:CDS
CTCGCCCTTGTACGATCCAA+TGG 0.543891 8_1:+3796762 Msa1173380:CDS
TACTCTTGAATTTCTTCAGT+AGG 0.550843 8_1:-3790902 None:intergenic
TTTGTTGTAGGGCTTGGCAG+AGG 0.558067 8_1:+3796402 Msa1173380:intron
GACAGAGAAGCAAGGTTGAG+TGG 0.559534 8_1:-3790137 None:intergenic
GCTATGCTCAGAAAGGATAG+AGG 0.573110 8_1:+3795389 Msa1173380:CDS
TATTTGAATGCTGTATATAG+GGG 0.579872 8_1:-3795423 None:intergenic
GCGAACTGAATCTTGTTCCA+GGG 0.581743 8_1:+3796725 Msa1173380:CDS
ACCAAGAGCTATGCTCAGAA+AGG 0.582588 8_1:+3795382 Msa1173380:CDS
TGTAGTCAGTGCTGCTGCTG+CGG 0.582718 8_1:+3790868 Msa1173380:CDS
TGGTAATTTATCAAAAGAAG+GGG 0.588705 8_1:+3796501 Msa1173380:CDS
AGTTCAAACATAGCCCATGA+AGG 0.591842 8_1:-3791403 None:intergenic
AATCAACCAATTATGTGCGG+TGG 0.594257 8_1:+3795356 Msa1173380:CDS
AACTTGTTAGTACATAAATG+AGG 0.601227 8_1:+3796894 Msa1173380:three_prime_UTR
ACAAATGGAGTGGATTGGGA+TGG 0.612781 8_1:+3795694 Msa1173380:CDS
TGTTATGCTATGACTTCGAG+AGG 0.628193 8_1:-3790164 None:intergenic
TGGATCATGTCCAATTGAAG+TGG 0.628823 8_1:+3796798 Msa1173380:CDS
TTTAATCAACCAATTATGTG+CGG 0.634307 8_1:+3795353 Msa1173380:CDS
ACATGATCCATCATCCACAT+TGG 0.636100 8_1:-3796785 None:intergenic
GTATACTGGAAAACCACTAA+CGG 0.651682 8_1:+3791439 Msa1173380:CDS
GAGCTAGGATCGATGCACCC+TGG 0.654050 8_1:-3796742 None:intergenic
GCCAATTGAATTCTTTAACG+AGG 0.659443 8_1:+3795762 Msa1173380:CDS
GAGGTTGTGACAGAGAAGCA+AGG 0.664017 8_1:-3790145 None:intergenic
TCAGTGCTAACTACTAACTG+TGG 0.664353 8_1:-3796942 None:intergenic
CTATAGTATAGTATTGAAAG+GGG 0.674545 8_1:-3796981 None:intergenic
TTGGCCATTGGATCGTACAA+GGG 0.682955 8_1:-3796766 None:intergenic
GTACGATCCAATGGCCAATG+TGG 0.734004 8_1:+3796771 Msa1173380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTATTTATTTTTTAATAG+TGG + chr8_1:3790283-3790302 Msa1173380:intron 10.0%
!!! ACCTTTTTTTTTATAAATTT+TGG + chr8_1:3791539-3791558 Msa1173380:intron 10.0%
!! TTTACAATTTAAATAAGTTA+TGG - chr8_1:3791919-3791938 None:intergenic 10.0%
!!! ACTAATTTATATTTTCATTT+GGG - chr8_1:3793106-3793125 None:intergenic 10.0%
!!! TACTAATTTATATTTTCATT+TGG - chr8_1:3793107-3793126 None:intergenic 10.0%
!!! AATTATTTTATTGCAATTTT+TGG + chr8_1:3793882-3793901 Msa1173380:intron 10.0%
!!! ATTATTTTATTGCAATTTTT+GGG + chr8_1:3793883-3793902 Msa1173380:intron 10.0%
!! ATTCATAAATTGTTATAAAA+TGG + chr8_1:3793911-3793930 Msa1173380:intron 10.0%
!! ATAAAAGTAAAAAAATACTT+TGG + chr8_1:3796356-3796375 Msa1173380:intron 10.0%
!! TAAAAGTAAAAAAATACTTT+GGG + chr8_1:3796357-3796376 Msa1173380:intron 10.0%
!!! ATATTTACTCTTTTTTTATA+AGG + chr8_1:3796557-3796576 Msa1173380:intron 10.0%
!!! ATTTATTTTTTAATAGTGGA+CGG + chr8_1:3790287-3790306 Msa1173380:intron 15.0%
!! TAGAAATACAGAAAATATAA+AGG + chr8_1:3791154-3791173 Msa1173380:intron 15.0%
!! GTTCATATATTTATTTATTG+TGG - chr8_1:3791266-3791285 None:intergenic 15.0%
!! ATAAACATTAATAGGATATA+TGG - chr8_1:3791371-3791390 None:intergenic 15.0%
!! TATATCCTATTAATGTTTAT+AGG + chr8_1:3791371-3791390 Msa1173380:intron 15.0%
!! TATTATTGAGTTAATTCATT+AGG + chr8_1:3791488-3791507 Msa1173380:intron 15.0%
!! GCCAAAATTTATAAAAAAAA+AGG - chr8_1:3791543-3791562 None:intergenic 15.0%
!!! TTTTTTTTATAAATTTTGGC+AGG + chr8_1:3791543-3791562 Msa1173380:intron 15.0%
!!! TTTTTTTATAAATTTTGGCA+GGG + chr8_1:3791544-3791563 Msa1173380:intron 15.0%
!!! GTTGTAAAGTTTTTAAAAAA+GGG - chr8_1:3792386-3792405 None:intergenic 15.0%
!!! TGTTGTAAAGTTTTTAAAAA+AGG - chr8_1:3792387-3792406 None:intergenic 15.0%
!!! TATACTAAAGTTTTATCAAA+TGG - chr8_1:3792471-3792490 None:intergenic 15.0%
!!! AATGATTGATTTATTAGTTA+TGG - chr8_1:3792568-3792587 None:intergenic 15.0%
!! GAAAAATTATAATCAAAATC+AGG + chr8_1:3793630-3793649 Msa1173380:intron 15.0%
!! TCTTAAGATAAAATAATAGA+AGG + chr8_1:3794253-3794272 Msa1173380:intron 15.0%
!! TAAATAATGAATTCTTACAA+AGG + chr8_1:3794554-3794573 Msa1173380:intron 15.0%
!! AACTTCAAAAATATCAATAA+TGG + chr8_1:3794643-3794662 Msa1173380:intron 15.0%
!! TTATATATGAAAAGCTTAAT+AGG + chr8_1:3794674-3794693 Msa1173380:intron 15.0%
!! TAATTTAAATTTATCTCAAG+AGG + chr8_1:3795154-3795173 Msa1173380:intron 15.0%
!!! TTTTCTAGAACAATTTAATA+AGG + chr8_1:3795190-3795209 Msa1173380:intron 15.0%
!!! TTTATTTTTTATGATCAAGA+GGG - chr8_1:3796341-3796360 None:intergenic 15.0%
!!! TTTTATTTTTTATGATCAAG+AGG - chr8_1:3796342-3796361 None:intergenic 15.0%
!! AAAAGTAAAAAAATACTTTG+GGG + chr8_1:3796358-3796377 Msa1173380:intron 15.0%
!! CTTAATATTGGATTGAAATA+TGG - chr8_1:3790060-3790079 None:intergenic 20.0%
!! CATATTTCAATCCAATATTA+AGG + chr8_1:3790058-3790077 Msa1173380:five_prime_UTR 20.0%
!! AAAAGAAAAAGAGAGAAAAA+AGG - chr8_1:3790210-3790229 None:intergenic 20.0%
!! TAATATTCTATCCTATAACA+TGG - chr8_1:3790488-3790507 None:intergenic 20.0%
!!! AATATCATAGTCTAGTTTAA+TGG - chr8_1:3790529-3790548 None:intergenic 20.0%
!!! TATTCAAACATTTTTTAACC+AGG - chr8_1:3790670-3790689 None:intergenic 20.0%
!! TTTGTTCATGTATTTGTTTA+TGG - chr8_1:3791220-3791239 None:intergenic 20.0%
!! TTGTACCTATAAACATTAAT+AGG - chr8_1:3791379-3791398 None:intergenic 20.0%
!!! TTTATTTTTTAGATTCGAAC+AGG - chr8_1:3791859-3791878 None:intergenic 20.0%
!!! TTTGGTACTTCTTTTTATTA+GGG - chr8_1:3791883-3791902 None:intergenic 20.0%
!!! TTTTGGTACTTCTTTTTATT+AGG - chr8_1:3791884-3791903 None:intergenic 20.0%
!! TATTAGTTAGAAGTTGTATT+GGG - chr8_1:3792087-3792106 None:intergenic 20.0%
!! ATATTAGTTAGAAGTTGTAT+TGG - chr8_1:3792088-3792107 None:intergenic 20.0%
!!! TTTAAAAAAGGGATTAGTAA+AGG - chr8_1:3792375-3792394 None:intergenic 20.0%
!!! ATTGATTTATTAGTTATGGA+AGG - chr8_1:3792564-3792583 None:intergenic 20.0%
!! TTGAAAAAAGCTTATGAAAA+TGG - chr8_1:3793281-3793300 None:intergenic 20.0%
!!! ATTAACCTACTATTAATTTG+TGG - chr8_1:3793501-3793520 None:intergenic 20.0%
!! ATCAAAATCATTGAAAATGA+AGG + chr8_1:3793661-3793680 Msa1173380:intron 20.0%
!! TCAAAATCATTGAAAATGAA+GGG + chr8_1:3793662-3793681 Msa1173380:intron 20.0%
!! CAAAAAGAATGAAAAGTTTA+GGG + chr8_1:3793707-3793726 Msa1173380:intron 20.0%
!!! TTTTTCATAGTTGAGTATAT+GGG - chr8_1:3794036-3794055 None:intergenic 20.0%
!!! TTTTTTCATAGTTGAGTATA+TGG - chr8_1:3794037-3794056 None:intergenic 20.0%
!!! CATAAAATAGGCTTTTAAAT+AGG - chr8_1:3794451-3794470 None:intergenic 20.0%
!! TTATTTAGTAGCTGATATAT+TGG - chr8_1:3794590-3794609 None:intergenic 20.0%
!! CTAAATAACCAATTATATGA+AGG + chr8_1:3794602-3794621 Msa1173380:intron 20.0%
!! TGATATTCAAAACTACAAAT+AGG + chr8_1:3795063-3795082 Msa1173380:intron 20.0%
!! GATATTCAAAACTACAAATA+GGG + chr8_1:3795064-3795083 Msa1173380:intron 20.0%
!! ATATTCAAAACTACAAATAG+GGG + chr8_1:3795065-3795084 Msa1173380:intron 20.0%
!!! AGTTTTAATTTTGCATGTTT+AGG + chr8_1:3795326-3795345 Msa1173380:intron 20.0%
!! ATATTTGAATGCTGTATATA+GGG - chr8_1:3795427-3795446 None:intergenic 20.0%
!!! TATGTTACTTCAATTTCTAA+CGG + chr8_1:3795466-3795485 Msa1173380:intron 20.0%
!!! AGTTTTGACTAAAATTACAT+TGG + chr8_1:3795571-3795590 Msa1173380:intron 20.0%
!! TTACATTGGACAAAATTATT+CGG + chr8_1:3795585-3795604 Msa1173380:intron 20.0%
!! TTAAAGCTACACAAAAAAAA+AGG - chr8_1:3795625-3795644 None:intergenic 20.0%
!!! AAACTTAACTTCTCTTTTTT+TGG + chr8_1:3795643-3795662 Msa1173380:intron 20.0%
!!! TTGATTTTCTCATTTACAAA+TGG + chr8_1:3795679-3795698 Msa1173380:CDS 20.0%
!! AGAAATGTGAAAAATACAAA+GGG - chr8_1:3795875-3795894 None:intergenic 20.0%
!! AAGAAATGTGAAAAATACAA+AGG - chr8_1:3795876-3795895 None:intergenic 20.0%
!! CAAATTTAATACACAAACAA+AGG - chr8_1:3795958-3795977 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + chr8_1:3795995-3796014 Msa1173380:intron 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + chr8_1:3795996-3796015 Msa1173380:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr8_1:3795997-3796016 Msa1173380:intron 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + chr8_1:3796079-3796098 Msa1173380:intron 20.0%
!! AGATATTTCTTGAACAAAAA+TGG + chr8_1:3796187-3796206 Msa1173380:intron 20.0%
!!! ATTGGTAATTTATCAAAAGA+AGG + chr8_1:3796499-3796518 Msa1173380:CDS 20.0%
!!! TTGGTAATTTATCAAAAGAA+GGG + chr8_1:3796500-3796519 Msa1173380:CDS 20.0%
!! TTAAATCATTGTAATAGAGT+TGG + chr8_1:3796659-3796678 Msa1173380:intron 20.0%
!! AAATTATGGTTCATAGTATA+AGG + chr8_1:3797009-3797028 Msa1173380:three_prime_UTR 20.0%
! TATAGTAGGAAACAGATAAA+AGG - chr8_1:3789969-3789988 None:intergenic 25.0%
! TTTCCTACTATATCTATCTA+TGG + chr8_1:3789977-3789996 Msa1173380:five_prime_UTR 25.0%
!!! TTTTGGTGATTCCTTAATAT+TGG - chr8_1:3790072-3790091 None:intergenic 25.0%
!! ATTTGATTATTTGTTGACTG+AGG + chr8_1:3790322-3790341 Msa1173380:intron 25.0%
! ATCAATTCAATGATAGACTT+AGG - chr8_1:3790369-3790388 None:intergenic 25.0%
! TATAAGAAGTTCCATGTTAT+AGG + chr8_1:3790474-3790493 Msa1173380:intron 25.0%
!!! TGATATTTTAAGCAAAGTCT+CGG + chr8_1:3790542-3790561 Msa1173380:intron 25.0%
! GAAAGGATAAATCATACTTA+AGG + chr8_1:3790599-3790618 Msa1173380:intron 25.0%
! CAATGGAGAAAAGTTAATAT+AGG + chr8_1:3790957-3790976 Msa1173380:intron 25.0%
!!! GTTTTAAAAACTGACTCAAA+TGG - chr8_1:3791129-3791148 None:intergenic 25.0%
! CATTAATAGGATATATGGTA+GGG - chr8_1:3791366-3791385 None:intergenic 25.0%
! ACATTAATAGGATATATGGT+AGG - chr8_1:3791367-3791386 None:intergenic 25.0%
! AATATCATACTTACTGAAGT+AGG - chr8_1:3791472-3791491 None:intergenic 25.0%
!!! GAATTTGGAATTGCTTTTAA+TGG + chr8_1:3791622-3791641 Msa1173380:CDS 25.0%
!! CATTTTCCATAACAATTGTA+TGG + chr8_1:3791682-3791701 Msa1173380:intron 25.0%
!!! AGAGAGAGTATATGTTATTT+TGG + chr8_1:3791731-3791750 Msa1173380:intron 25.0%
!! TTGGTACTTCTTTTTATTAG+GGG - chr8_1:3791882-3791901 None:intergenic 25.0%
!!! TATGGCTCTTTTAGAATTTT+TGG - chr8_1:3791901-3791920 None:intergenic 25.0%
!! GCTCTTTTTGATGTTATTAA+TGG - chr8_1:3791944-3791963 None:intergenic 25.0%
! TATTTCTTATGTTATCTACG+AGG - chr8_1:3791970-3791989 None:intergenic 25.0%
!! TGATGTTATTGATTAGAACA+TGG - chr8_1:3791998-3792017 None:intergenic 25.0%
!!! ACTAAAGTAGTTTGAGTTTT+TGG - chr8_1:3792047-3792066 None:intergenic 25.0%
! AAAGGTCAATTAACAAATGA+GGG - chr8_1:3792357-3792376 None:intergenic 25.0%
! TAAAGGTCAATTAACAAATG+AGG - chr8_1:3792358-3792377 None:intergenic 25.0%
! TATATTTGATCCGAAGAATT+GGG - chr8_1:3792607-3792626 None:intergenic 25.0%
! ATATATTTGATCCGAAGAAT+TGG - chr8_1:3792608-3792627 None:intergenic 25.0%
! ATATCAAACGAATGTTCTAA+TGG + chr8_1:3792624-3792643 Msa1173380:intron 25.0%
! TATCAAACGAATGTTCTAAT+GGG + chr8_1:3792625-3792644 Msa1173380:intron 25.0%
!!! AATGTTGATTTGGAAAATAG+AGG - chr8_1:3792735-3792754 None:intergenic 25.0%
! TACAACTGAGAATAGTAATA+TGG - chr8_1:3792766-3792785 None:intergenic 25.0%
!! AAGATTAGAAAGTATGAATC+TGG - chr8_1:3792939-3792958 None:intergenic 25.0%
! GATTCATACTTTCTAATCTT+AGG + chr8_1:3792939-3792958 Msa1173380:intron 25.0%
!!! TGGCTTAATCTTTTGATTAT+AGG - chr8_1:3793145-3793164 None:intergenic 25.0%
! TGCTATATATTAAGCATGTT+TGG + chr8_1:3793179-3793198 Msa1173380:intron 25.0%
!!! ATAAGTTTTTTGAGACTGTT+TGG + chr8_1:3793230-3793249 Msa1173380:intron 25.0%
!!! TAAGTTTTTTGAGACTGTTT+GGG + chr8_1:3793231-3793250 Msa1173380:intron 25.0%
! TATAAGCACTTATCATGATA+AGG + chr8_1:3793419-3793438 Msa1173380:intron 25.0%
! ATAAGCACTTATCATGATAA+GGG + chr8_1:3793420-3793439 Msa1173380:intron 25.0%
! GTATCAAAGTTATATGCATT+CGG - chr8_1:3793605-3793624 None:intergenic 25.0%
! GCAAAAAGAATGAAAAGTTT+AGG + chr8_1:3793706-3793725 Msa1173380:intron 25.0%
! AATTGACCTTAATAATTGTG+AGG + chr8_1:3793973-3793992 Msa1173380:intron 25.0%
!! TTTTCATAGTTGAGTATATG+GGG - chr8_1:3794035-3794054 None:intergenic 25.0%
! TCAAAAGCTACTCAATTTAT+AGG - chr8_1:3794144-3794163 None:intergenic 25.0%
!! TAAAAGCCTATTTTATGCTA+AGG + chr8_1:3794454-3794473 Msa1173380:intron 25.0%
!! TAATAAGTTTTGCCCTATAT+AGG - chr8_1:3794504-3794523 None:intergenic 25.0%
! ATATAGGGCAAAACTTATTA+AGG + chr8_1:3794504-3794523 Msa1173380:intron 25.0%
! ATATGAAAAGCTTAATAGGT+CGG + chr8_1:3794678-3794697 Msa1173380:intron 25.0%
! TAAGGCCTATTTAATTAAAC+AGG - chr8_1:3794745-3794764 None:intergenic 25.0%
!!! TTTTTCTCTCCTTTTTTTAG+AGG + chr8_1:3794950-3794969 Msa1173380:intron 25.0%
!! TAACATGTTCCTCTAAAAAA+AGG - chr8_1:3794962-3794981 None:intergenic 25.0%
!! CACCTTTATAATTTAGAGTT+CGG - chr8_1:3795006-3795025 None:intergenic 25.0%
!!! TTTTTAACATTTTGGTTCTC+AGG - chr8_1:3795036-3795055 None:intergenic 25.0%
! TATTCAAAACTACAAATAGG+GGG + chr8_1:3795066-3795085 Msa1173380:intron 25.0%
! ATATTGTCTTAAGTAGACTA+TGG + chr8_1:3795250-3795269 Msa1173380:intron 25.0%
!!! TTTAATTTTGCATGTTTAGG+TGG + chr8_1:3795329-3795348 Msa1173380:intron 25.0%
! TTTAATCAACCAATTATGTG+CGG + chr8_1:3795353-3795372 Msa1173380:CDS 25.0%
! TATTTGAATGCTGTATATAG+GGG - chr8_1:3795426-3795445 None:intergenic 25.0%
! CATATTTGAATGCTGTATAT+AGG - chr8_1:3795428-3795447 None:intergenic 25.0%
! AGTAACATATTACCATGTTT+AGG - chr8_1:3795455-3795474 None:intergenic 25.0%
! AAATGTGAAAAATACAAAGG+GGG - chr8_1:3795873-3795892 None:intergenic 25.0%
! GAAATGTGAAAAATACAAAG+GGG - chr8_1:3795874-3795893 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr8_1:3796007-3796026 Msa1173380:intron 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr8_1:3796043-3796062 Msa1173380:intron 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr8_1:3796044-3796063 Msa1173380:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG + chr8_1:3796078-3796097 Msa1173380:intron 25.0%
! CAAAAATAAAATCAAATGGG+TGG + chr8_1:3796082-3796101 Msa1173380:intron 25.0%
!! TATTTCTTTTAGTCGTGAAA+TGG - chr8_1:3796314-3796333 None:intergenic 25.0%
!! AGTGTATTATTCTTTGTTGT+AGG + chr8_1:3796390-3796409 Msa1173380:intron 25.0%
!! GTGTATTATTCTTTGTTGTA+GGG + chr8_1:3796391-3796410 Msa1173380:intron 25.0%
! ATAGAAAAATGTGCTATGAT+TGG + chr8_1:3796481-3796500 Msa1173380:CDS 25.0%
! TGGTAATTTATCAAAAGAAG+GGG + chr8_1:3796501-3796520 Msa1173380:CDS 25.0%
!! TTGATCGAAAAAATCTTTTC+AGG + chr8_1:3796693-3796712 Msa1173380:intron 25.0%
!! TGATCGAAAAAATCTTTTCA+GGG + chr8_1:3796694-3796713 Msa1173380:intron 25.0%
!!! AACTTGTTAGTACATAAATG+AGG + chr8_1:3796894-3796913 Msa1173380:three_prime_UTR 25.0%
!! CTATAGTATAGTATTGAAAG+GGG - chr8_1:3796984-3797003 None:intergenic 25.0%
!! CCTATAGTATAGTATTGAAA+GGG - chr8_1:3796985-3797004 None:intergenic 25.0%
! CCTTTCAATACTATACTATA+GGG + chr8_1:3796983-3797002 Msa1173380:three_prime_UTR 25.0%
! ATACTATAGGGAAGAAATTA+TGG + chr8_1:3796995-3797014 Msa1173380:three_prime_UTR 25.0%
TGTCCATAGATAGATATAGT+AGG - chr8_1:3789983-3790002 None:intergenic 30.0%
TCGTAGATGAAAAAAAAACG+TGG + chr8_1:3790574-3790593 Msa1173380:intron 30.0%
GAAAAAAAAACGTGGTTGAA+AGG + chr8_1:3790582-3790601 Msa1173380:intron 30.0%
AGGATAAATCATACTTAAGG+TGG + chr8_1:3790602-3790621 Msa1173380:intron 30.0%
ACTGAAAACTAATCCTCATT+TGG - chr8_1:3790639-3790658 None:intergenic 30.0%
! AGTTTTCAGTTAAGTAAACC+TGG + chr8_1:3790649-3790668 Msa1173380:intron 30.0%
TCATATGTCTTTCCTTCAAA+GGG - chr8_1:3790838-3790857 None:intergenic 30.0%
TTCATATGTCTTTCCTTCAA+AGG - chr8_1:3790839-3790858 None:intergenic 30.0%
TACTCTTGAATTTCTTCAGT+AGG - chr8_1:3790905-3790924 None:intergenic 30.0%
ATCCAACATTGGTATTAAGT+GGG - chr8_1:3790934-3790953 None:intergenic 30.0%
AATCCAACATTGGTATTAAG+TGG - chr8_1:3790935-3790954 None:intergenic 30.0%
TACCAATGTTGGATTTACAA+TGG + chr8_1:3790940-3790959 Msa1173380:intron 30.0%
!!! CAGTGTTTTGAAAACTGAAA+TGG + chr8_1:3791013-3791032 Msa1173380:intron 30.0%
TCACTGTCTAATTATTTGAG+TGG - chr8_1:3791097-3791116 None:intergenic 30.0%
GTTCATGTATTTGTTTATGG+TGG - chr8_1:3791217-3791236 None:intergenic 30.0%
GTTCTCCAAATTGTTTAAGA+CGG - chr8_1:3791837-3791856 None:intergenic 30.0%
! GTCATCATTCTAACACTTTT+TGG + chr8_1:3792132-3792151 Msa1173380:intron 30.0%
! CTGAGAAAGAATAACCTTTT+GGG - chr8_1:3792191-3792210 None:intergenic 30.0%
! ACTGAGAAAGAATAACCTTT+TGG - chr8_1:3792192-3792211 None:intergenic 30.0%
ATGGTAAGAATATGACTACT+TGG - chr8_1:3792275-3792294 None:intergenic 30.0%
! TTTAGTGATTGGTCACATAT+TGG - chr8_1:3792333-3792352 None:intergenic 30.0%
CGTCTAGAAAGTTTATCTTT+AGG + chr8_1:3792507-3792526 Msa1173380:intron 30.0%
GAAAATAGAGGTGATGTTAA+TGG - chr8_1:3792723-3792742 None:intergenic 30.0%
! GGAGAATGAAAATGTTGATT+TGG - chr8_1:3792745-3792764 None:intergenic 30.0%
TGTTGAAATTCTTGCAAATG+TGG - chr8_1:3792790-3792809 None:intergenic 30.0%
! TGATTTTCAACAGGAATTTG+TGG + chr8_1:3792828-3792847 Msa1173380:intron 30.0%
GAGTTTATTCAATCTCAAAG+AGG - chr8_1:3792882-3792901 None:intergenic 30.0%
TCATACTTTCTAATCTTAGG+AGG + chr8_1:3792942-3792961 Msa1173380:intron 30.0%
! ATTTTCATTTGGGAATTGCT+AGG - chr8_1:3793096-3793115 None:intergenic 30.0%
TTGTGTTATAAGCTGCAAAT+AGG + chr8_1:3793444-3793463 Msa1173380:intron 30.0%
! TAATTTGTGGAAGACAGTAA+CGG - chr8_1:3793488-3793507 None:intergenic 30.0%
GTCTTCCACAAATTAATAGT+AGG + chr8_1:3793493-3793512 Msa1173380:intron 30.0%
TTTCATAGTTGAGTATATGG+GGG - chr8_1:3794034-3794053 None:intergenic 30.0%
CAAACATATTTGTGTGCTTT+AGG - chr8_1:3794530-3794549 None:intergenic 30.0%
AACACAAGCCTTCATATAAT+TGG - chr8_1:3794613-3794632 None:intergenic 30.0%
TCTCTACAAGTGTAGAATTA+GGG - chr8_1:3794871-3794890 None:intergenic 30.0%
ACAACTCTTTAACAGATAGT+TGG - chr8_1:3794909-3794928 None:intergenic 30.0%
GACCGAACTCTAAATTATAA+AGG + chr8_1:3795001-3795020 Msa1173380:intron 30.0%
CAAATATGTGTTCCTAAACA+TGG + chr8_1:3795440-3795459 Msa1173380:intron 30.0%
TTTCTCATTTACAAATGGAG+TGG + chr8_1:3795684-3795703 Msa1173380:CDS 30.0%
! ATTTACAAATGGAGTGGATT+GGG + chr8_1:3795690-3795709 Msa1173380:CDS 30.0%
ACTTGAAATTGCAGTCTATA+TGG - chr8_1:3795721-3795740 None:intergenic 30.0%
ACCTCGTTAAAGAATTCAAT+TGG - chr8_1:3795766-3795785 None:intergenic 30.0%
AATGTGAAAAATACAAAGGG+GGG - chr8_1:3795872-3795891 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG + chr8_1:3796045-3796064 Msa1173380:intron 30.0%
CATCTAGTAATTTGAAAAGG+GGG + chr8_1:3796046-3796065 Msa1173380:intron 30.0%
AGTCTTAACATAATACCAGA+TGG + chr8_1:3796225-3796244 Msa1173380:intron 30.0%
TAACATAATACCAGATGGTT+TGG + chr8_1:3796230-3796249 Msa1173380:intron 30.0%
ATTTAAAGAGTAACTGCAAG+TGG - chr8_1:3796645-3796664 None:intergenic 30.0%
CCCTTTCAATACTATACTAT+AGG + chr8_1:3796982-3797001 Msa1173380:three_prime_UTR 30.0%
! CCCTATAGTATAGTATTGAA+AGG - chr8_1:3796986-3797005 None:intergenic 30.0%
! CACCAAAAAAGTGTGATACA+TGG + chr8_1:3790084-3790103 Msa1173380:exon 35.0%
!!! AGCCATGTATCACACTTTTT+TGG - chr8_1:3790089-3790108 None:intergenic 35.0%
CATAGCATAACAAACACGTT+TGG + chr8_1:3790175-3790194 Msa1173380:CDS 35.0%
TTCCCACTTAATACCAATGT+TGG + chr8_1:3790929-3790948 Msa1173380:intron 35.0%
CTCCATTGTAAATCCAACAT+TGG - chr8_1:3790945-3790964 None:intergenic 35.0%
GTATACTGGAAAACCACTAA+CGG + chr8_1:3791439-3791458 Msa1173380:CDS 35.0%
GCAATTCCAAATTCTTCACT+AGG - chr8_1:3791616-3791635 None:intergenic 35.0%
CTACTGCCATACAATTGTTA+TGG - chr8_1:3791691-3791710 None:intergenic 35.0%
AGCTTACTGATAAGTGTGTA+CGG + chr8_1:3791775-3791794 Msa1173380:intron 35.0%
TAGTAAACTAGACCATAGTC+AGG + chr8_1:3791810-3791829 Msa1173380:intron 35.0%
!!! TGAGTTTTTGGTGCTTCATT+TGG - chr8_1:3792035-3792054 None:intergenic 35.0%
TCATATTGCATTGTCCCAAA+AGG + chr8_1:3792174-3792193 Msa1173380:intron 35.0%
CTGCAAAAGAATCAGACTAT+TGG - chr8_1:3792234-3792253 None:intergenic 35.0%
!! CAAATGAGGGTTTTAGTGAT+TGG - chr8_1:3792344-3792363 None:intergenic 35.0%
!! ATCTTTAGGACCATTCACAA+CGG + chr8_1:3792521-3792540 Msa1173380:intron 35.0%
! ACAACGGACAAATCTCTTTT+AGG + chr8_1:3792537-3792556 Msa1173380:intron 35.0%
GTTAATGACAATGTAGAGCA+GGG - chr8_1:3792654-3792673 None:intergenic 35.0%
TGTTAATGACAATGTAGAGC+AGG - chr8_1:3792655-3792674 None:intergenic 35.0%
GAACAACGAAGATGATAATC+TGG - chr8_1:3792685-3792704 None:intergenic 35.0%
CCTGTTGAAAATCAGAATGT+TGG - chr8_1:3792822-3792841 None:intergenic 35.0%
! CCAACATTCTGATTTTCAAC+AGG + chr8_1:3792819-3792838 Msa1173380:intron 35.0%
CTAATCTTAGGAGGAATCTT+AGG + chr8_1:3792951-3792970 Msa1173380:intron 35.0%
AGTAGTGAGTGAGAAATTTC+AGG - chr8_1:3793003-3793022 None:intergenic 35.0%
! ATAGCAGAGAGAGATTCTTT+TGG - chr8_1:3793165-3793184 None:intergenic 35.0%
AATTTGTGGAAGACAGTAAC+GGG - chr8_1:3793487-3793506 None:intergenic 35.0%
!!! TTGTGAGTGAGTTTTGTTTG+AGG + chr8_1:3793810-3793829 Msa1173380:intron 35.0%
! TTGTTTGAGGCCAAAAAGTT+TGG + chr8_1:3793823-3793842 Msa1173380:intron 35.0%
AGGCCAAAAAGTTTGGTTAA+TGG + chr8_1:3793830-3793849 Msa1173380:intron 35.0%
GGCCAAAAAGTTTGGTTAAT+GGG + chr8_1:3793831-3793850 Msa1173380:intron 35.0%
! AGCCCATTAACCAAACTTTT+TGG - chr8_1:3793836-3793855 None:intergenic 35.0%
ACAAGGCCTCACAATTATTA+AGG - chr8_1:3793982-3794001 None:intergenic 35.0%
AAGTCGATTAAGAGATAGCT+CGG + chr8_1:3794055-3794074 Msa1173380:intron 35.0%
CACTACAAGCATTCTACATA+GGG + chr8_1:3794276-3794295 Msa1173380:intron 35.0%
ACTACAAGCATTCTACATAG+GGG + chr8_1:3794277-3794296 Msa1173380:intron 35.0%
! AGGCTTTTAAATAGGCTTTC+AGG - chr8_1:3794443-3794462 None:intergenic 35.0%
ATGTAAGCCTACTCCTATAT+AGG + chr8_1:3794488-3794507 Msa1173380:intron 35.0%
TGTAAGCCTACTCCTATATA+GGG + chr8_1:3794489-3794508 Msa1173380:intron 35.0%
AAAAAGCCTATTAAGCCCAT+CGG - chr8_1:3794705-3794724 None:intergenic 35.0%
CCTATTTAATTAAACAGGCC+AGG - chr8_1:3794740-3794759 None:intergenic 35.0%
CCTGGCCTGTTTAATTAAAT+AGG + chr8_1:3794737-3794756 Msa1173380:intron 35.0%
! TCAGGCTCAAGCTTTTTATA+AGG - chr8_1:3794763-3794782 None:intergenic 35.0%
ACCTTGTTAATAAACGAGCT+GGG + chr8_1:3794782-3794801 Msa1173380:intron 35.0%
CTCTACAAGTGTAGAATTAG+GGG - chr8_1:3794870-3794889 None:intergenic 35.0%
GTCTCTACAAGTGTAGAATT+AGG - chr8_1:3794872-3794891 None:intergenic 35.0%
GTTTGAATTGACAGTGAGTT+TGG + chr8_1:3795505-3795524 Msa1173380:intron 35.0%
CATTTACAAATGGAGTGGAT+TGG + chr8_1:3795689-3795708 Msa1173380:CDS 35.0%
!! TCAATTGGCTTGTTCTGTAA+AGG - chr8_1:3795751-3795770 None:intergenic 35.0%
GCCAATTGAATTCTTTAACG+AGG + chr8_1:3795762-3795781 Msa1173380:CDS 35.0%
TTGAAAAGGGGGTTACATTT+AGG + chr8_1:3796057-3796076 Msa1173380:intron 35.0%
TGAAAAGGGGGTTACATTTA+GGG + chr8_1:3796058-3796077 Msa1173380:intron 35.0%
TCAAATGGGTGGTTACATTA+AGG + chr8_1:3796093-3796112 Msa1173380:intron 35.0%
CAAATGGGTGGTTACATTAA+GGG + chr8_1:3796094-3796113 Msa1173380:intron 35.0%
!! ATACCAGATGGTTTGGATTT+TGG + chr8_1:3796237-3796256 Msa1173380:intron 35.0%
AATCCAAAATCCAAACCATC+TGG - chr8_1:3796243-3796262 None:intergenic 35.0%
! TTATTCTTTGTTGTAGGGCT+TGG + chr8_1:3796396-3796415 Msa1173380:intron 35.0%
GAATCAGAATCCACTTCAAT+TGG - chr8_1:3796811-3796830 None:intergenic 35.0%
! TAGTAGTTAGCACTGAACTT+TGG + chr8_1:3796949-3796968 Msa1173380:three_prime_UTR 35.0%
TAATGAGAAGAGAGAGAGAG+TGG - chr8_1:3790029-3790048 None:intergenic 40.0%
TGTTATGCTATGACTTCGAG+AGG - chr8_1:3790167-3790186 None:intergenic 40.0%
CACATGACCAATTGCAAAGA+GGG - chr8_1:3790247-3790266 None:intergenic 40.0%
! GCAATTGGTCATGTGGATTA+TGG + chr8_1:3790252-3790271 Msa1173380:intron 40.0%
CACTTCATAGTTTCTGATGC+AGG + chr8_1:3790776-3790795 Msa1173380:intron 40.0%
ACCAAGATGTTACCCTTTGA+AGG + chr8_1:3790823-3790842 Msa1173380:CDS 40.0%
TCCTTCAAAGGGTAACATCT+TGG - chr8_1:3790827-3790846 None:intergenic 40.0%
GTCATTGAACCATGACTTGA+AGG - chr8_1:3791056-3791075 None:intergenic 40.0%
ATAGGTACAAGCTTCCTTCA+TGG + chr8_1:3791389-3791408 Msa1173380:intron 40.0%
TAGGTACAAGCTTCCTTCAT+GGG + chr8_1:3791390-3791409 Msa1173380:intron 40.0%
AGTTCAAACATAGCCCATGA+AGG - chr8_1:3791406-3791425 None:intergenic 40.0%
! TCATGGGCTATGTTTGAACT+TGG + chr8_1:3791406-3791425 Msa1173380:CDS 40.0%
! CATGGGCTATGTTTGAACTT+GGG + chr8_1:3791407-3791426 Msa1173380:CDS 40.0%
CTTGCTCCTAGTGAAGAATT+TGG + chr8_1:3791607-3791626 Msa1173380:CDS 40.0%
CAGGACCGTCTTAAACAATT+TGG + chr8_1:3791829-3791848 Msa1173380:intron 40.0%
! AGTGATTGGTCACATATTGG+TGG - chr8_1:3792330-3792349 None:intergenic 40.0%
! GAGAGAAGTGTGATAGAGAT+TGG - chr8_1:3792449-3792468 None:intergenic 40.0%
AGAGATTTGTCCGTTGTGAA+TGG - chr8_1:3792534-3792553 None:intergenic 40.0%
!! TCAAGAGCATCCCAATTCTT+CGG + chr8_1:3792594-3792613 Msa1173380:intron 40.0%
CAACGAAGATGATAATCTGG+AGG - chr8_1:3792682-3792701 None:intergenic 40.0%
! TTACTGACTGATTCACTGGA+CGG - chr8_1:3793067-3793086 None:intergenic 40.0%
! TCGTTTACTGACTGATTCAC+TGG - chr8_1:3793071-3793090 None:intergenic 40.0%
GGATGCTTACATGTTGAATG+CGG + chr8_1:3793728-3793747 Msa1173380:intron 40.0%
TAGGGTTACCTTATTGCACA+AGG - chr8_1:3793999-3794018 None:intergenic 40.0%
AGTCGATTAAGAGATAGCTC+GGG + chr8_1:3794056-3794075 Msa1173380:intron 40.0%
! TCTTGATGACACGCGTATAT+TGG - chr8_1:3794113-3794132 None:intergenic 40.0%
TTACAACGAGACTCATGATG+TGG - chr8_1:3794226-3794245 None:intergenic 40.0%
GCACTACAAGCATTCTACAT+AGG + chr8_1:3794275-3794294 Msa1173380:intron 40.0%
ATTCTACATAGGGGTGGAAA+TGG + chr8_1:3794286-3794305 Msa1173380:intron 40.0%
TTCTACATAGGGGTGGAAAT+GGG + chr8_1:3794287-3794306 Msa1173380:intron 40.0%
!!! TAGCATTTTTGAAGTAGGCC+AGG - chr8_1:3794344-3794363 None:intergenic 40.0%
TGGCCTACTTCAAAAATGCT+AGG + chr8_1:3794343-3794362 Msa1173380:intron 40.0%
!!! AGGCCTAGCATTTTTGAAGT+AGG - chr8_1:3794349-3794368 None:intergenic 40.0%
!! ATGAGCATATGACGGGTAAT+AGG - chr8_1:3794380-3794399 None:intergenic 40.0%
CTCGAAAATGAGCATATGAC+GGG - chr8_1:3794387-3794406 None:intergenic 40.0%
CCTCGAAAATGAGCATATGA+CGG - chr8_1:3794388-3794407 None:intergenic 40.0%
! GCTTCATCAGGCCTTTAAAA+AGG - chr8_1:3794421-3794440 None:intergenic 40.0%
GTCAGGCCTTAGCATAAAAT+AGG - chr8_1:3794463-3794482 None:intergenic 40.0%
! GTTTTGCCCTATATAGGAGT+AGG - chr8_1:3794498-3794517 None:intergenic 40.0%
AAAAGCCTATTAAGCCCATC+GGG - chr8_1:3794704-3794723 None:intergenic 40.0%
TAATTAAACAGGCCAGGCTA+AGG - chr8_1:3794734-3794753 None:intergenic 40.0%
GCTCGTTTATTAACAAGGTC+AGG - chr8_1:3794781-3794800 None:intergenic 40.0%
GACCTTGTTAATAAACGAGC+TGG + chr8_1:3794781-3794800 Msa1173380:intron 40.0%
! AGCCTATTTAAGGCCTAACT+CGG - chr8_1:3794808-3794827 None:intergenic 40.0%
ACAAGTGTAGAATTAGGGGT+GGG - chr8_1:3794866-3794885 None:intergenic 40.0%
TACAAGTGTAGAATTAGGGG+TGG - chr8_1:3794867-3794886 None:intergenic 40.0%
AATCAACCAATTATGTGCGG+TGG + chr8_1:3795356-3795375 Msa1173380:CDS 40.0%
! GGCTTGTTCTGTAAAGGTTT+AGG - chr8_1:3795745-3795764 None:intergenic 40.0%
ACAAAGGGGGGTTACATTAA+GGG - chr8_1:3795860-3795879 None:intergenic 40.0%
TACAAAGGGGGGTTACATTA+AGG - chr8_1:3795861-3795880 None:intergenic 40.0%
GCAGAGGAACTAAGTAAAGA+AGG + chr8_1:3796418-3796437 Msa1173380:CDS 40.0%
TCTATAACTGCAGTTGTGTC+TGG - chr8_1:3796466-3796485 None:intergenic 40.0%
ACATGATCCATCATCCACAT+TGG - chr8_1:3796788-3796807 None:intergenic 40.0%
TGGATCATGTCCAATTGAAG+TGG + chr8_1:3796798-3796817 Msa1173380:CDS 40.0%
TCAGTGCTAACTACTAACTG+TGG - chr8_1:3796945-3796964 None:intergenic 40.0%
CCACATGACCAATTGCAAAG+AGG - chr8_1:3790248-3790267 None:intergenic 45.0%
CCTCTTTGCAATTGGTCATG+TGG + chr8_1:3790245-3790264 Msa1173380:intron 45.0%
CATACTTAAGGTGGTCAACG+AGG + chr8_1:3790611-3790630 Msa1173380:intron 45.0%
GAACCATGACTTGAAGGTCT+CGG - chr8_1:3791050-3791069 None:intergenic 45.0%
GGCTATGTTTGAACTTGGGA+AGG + chr8_1:3791411-3791430 Msa1173380:CDS 45.0%
TGATAAGTGTGTACGGCTCA+GGG + chr8_1:3791782-3791801 Msa1173380:intron 45.0%
! GTTTAAGACGGTCCTGACTA+TGG - chr8_1:3791825-3791844 None:intergenic 45.0%
CTTGGTATGAGTTGCGTCAA+CGG - chr8_1:3792257-3792276 None:intergenic 45.0%
! AGACTTAGAGAGCATGAGAG+AGG - chr8_1:3792306-3792325 None:intergenic 45.0%
ACGGTAAAGGGTAAAAGCTG+CGG - chr8_1:3793048-3793067 None:intergenic 45.0%
CTGATTCACTGGACGGTAAA+GGG - chr8_1:3793060-3793079 None:intergenic 45.0%
! ACTGATTCACTGGACGGTAA+AGG - chr8_1:3793061-3793080 None:intergenic 45.0%
!! AAGACAGTAACGGGTCTGTT+TGG - chr8_1:3793478-3793497 None:intergenic 45.0%
GCTTACATGTTGAATGCGGT+CGG + chr8_1:3793732-3793751 Msa1173380:intron 45.0%
GAGAGAAGTGGTTAACAGTG+AGG + chr8_1:3793785-3793804 Msa1173380:intron 45.0%
! TTGTGAGGCCTTGTGCAATA+AGG + chr8_1:3793988-3794007 Msa1173380:intron 45.0%
AGGTAACCCTAATGCTCCAT+AGG + chr8_1:3794008-3794027 Msa1173380:intron 45.0%
CAAAGAGATCATTCGCACGA+CGG - chr8_1:3794198-3794217 None:intergenic 45.0%
ACAAGCATTCTACATAGGGG+TGG + chr8_1:3794280-3794299 Msa1173380:intron 45.0%
!!! TTTTGAAGTAGGCCAGGCTT+AGG - chr8_1:3794338-3794357 None:intergenic 45.0%
! CCGTCATATGCTCATTTTCG+AGG + chr8_1:3794385-3794404 Msa1173380:intron 45.0%
! ATCAGGCCTTTAAAAAGGCC+AGG - chr8_1:3794416-3794435 None:intergenic 45.0%
ATAGGCTTTCAGGCTTCATC+AGG - chr8_1:3794433-3794452 None:intergenic 45.0%
GTAGGCTTACATGTGTTGTC+AGG - chr8_1:3794480-3794499 None:intergenic 45.0%
!! CTTTTTCACAAGCCTTAGCC+TGG + chr8_1:3794719-3794738 Msa1173380:intron 45.0%
GCCCAGCTCGTTTATTAACA+AGG - chr8_1:3794786-3794805 None:intergenic 45.0%
!! CCTACGGACTAGCCTATTTA+AGG - chr8_1:3794818-3794837 None:intergenic 45.0%
! CCTTAAATAGGCTAGTCCGT+AGG + chr8_1:3794815-3794834 Msa1173380:intron 45.0%
GTAGAATTAGGGGTGGGAAT+AGG - chr8_1:3794860-3794879 None:intergenic 45.0%
ACCAAGAGCTATGCTCAGAA+AGG + chr8_1:3795382-3795401 Msa1173380:CDS 45.0%
TCCTTTCTGAGCATAGCTCT+TGG - chr8_1:3795386-3795405 None:intergenic 45.0%
GCTATGCTCAGAAAGGATAG+AGG + chr8_1:3795389-3795408 Msa1173380:CDS 45.0%
!! ACAAATGGAGTGGATTGGGA+TGG + chr8_1:3795694-3795713 Msa1173380:CDS 45.0%
TGGGTGGTTACATTAAGGGA+CGG + chr8_1:3796098-3796117 Msa1173380:intron 45.0%
TGGTTACATTAAGGGACGGA+GGG + chr8_1:3796102-3796121 Msa1173380:intron 45.0%
GTCGTGAAATGGAGATCAGA+CGG - chr8_1:3796303-3796322 None:intergenic 45.0%
TGCGAACTGAATCTTGTTCC+AGG + chr8_1:3796724-3796743 Msa1173380:CDS 45.0%
GCGAACTGAATCTTGTTCCA+GGG + chr8_1:3796725-3796744 Msa1173380:CDS 45.0%
TTGGCCATTGGATCGTACAA+GGG - chr8_1:3796769-3796788 None:intergenic 45.0%
ATTGGCCATTGGATCGTACA+AGG - chr8_1:3796770-3796789 None:intergenic 45.0%
!!! AATTTTTTTTTTTAACATTT+TGG - chr8_1:3795044-3795063 None:intergenic 5.0%
TGAGAAGAGAGAGAGAGTGG+TGG - chr8_1:3790026-3790045 None:intergenic 50.0%
GACAGAGAAGCAAGGTTGAG+TGG - chr8_1:3790140-3790159 None:intergenic 50.0%
GAGGTTGTGACAGAGAAGCA+AGG - chr8_1:3790148-3790167 None:intergenic 50.0%
GAGTGCACCCTCTTTGCAAT+TGG + chr8_1:3790237-3790256 Msa1173380:intron 50.0%
GGTCAACGAGGTTCCAAATG+AGG + chr8_1:3790623-3790642 Msa1173380:intron 50.0%
TTGGGAAGGCTGCTGTATAC+TGG + chr8_1:3791425-3791444 Msa1173380:CDS 50.0%
AGTAGGAGCAACACCGTTAG+TGG - chr8_1:3791455-3791474 None:intergenic 50.0%
CTGATAAGTGTGTACGGCTC+AGG + chr8_1:3791781-3791800 Msa1173380:intron 50.0%
! CATGAGAGAGGCATGGAACA+TGG - chr8_1:3792294-3792313 None:intergenic 50.0%
! TAGAGAGCATGAGAGAGGCA+TGG - chr8_1:3792301-3792320 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAAG+TGG + chr8_1:3793773-3793792 Msa1173380:intron 50.0%
GTTGAGTATATGGGGGCCTA+TGG - chr8_1:3794027-3794046 None:intergenic 50.0%
CGATTAAGAGATAGCTCGGG+TGG + chr8_1:3794059-3794078 Msa1173380:intron 50.0%
AAAAATGCTAGGCCTGAGCC+TGG + chr8_1:3794354-3794373 Msa1173380:intron 50.0%
!! CATATGACGGGTAATAGGCC+AGG - chr8_1:3794375-3794394 None:intergenic 50.0%
!! GCCTGACCTGGCCTTTTTAA+AGG + chr8_1:3794407-3794426 Msa1173380:intron 50.0%
! GCCTTTAAAAAGGCCAGGTC+AGG - chr8_1:3794411-3794430 None:intergenic 50.0%
GGCCGAGTTAGGCCTTAAAT+AGG + chr8_1:3794803-3794822 Msa1173380:intron 50.0%
GGTTCACCACCGCACATAAT+TGG - chr8_1:3795365-3795384 None:intergenic 50.0%
GGGTTACATTAAGGGACGGA+TGG - chr8_1:3795852-3795871 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG - chr8_1:3795856-3795875 None:intergenic 50.0%
GTGGTTACATTAAGGGACGG+AGG + chr8_1:3796101-3796120 Msa1173380:intron 50.0%
! TTTGTTGTAGGGCTTGGCAG+AGG + chr8_1:3796402-3796421 Msa1173380:intron 50.0%
GTACGATCCAATGGCCAATG+TGG + chr8_1:3796771-3796790 Msa1173380:CDS 50.0%
CCATCATCCACATTGGCCAT+TGG - chr8_1:3796781-3796800 None:intergenic 50.0%
CCAATGGCCAATGTGGATGA+TGG + chr8_1:3796778-3796797 Msa1173380:CDS 50.0%
! TGTAGTCAGTGCTGCTGCTG+CGG + chr8_1:3790868-3790887 Msa1173380:CDS 55.0%
TCGCCGAGACCTTCAAGTCA+TGG + chr8_1:3791044-3791063 Msa1173380:intron 55.0%
! TGGGGGCCTATGGAGCATTA+GGG - chr8_1:3794017-3794036 None:intergenic 55.0%
! ATGGGGGCCTATGGAGCATT+AGG - chr8_1:3794018-3794037 None:intergenic 55.0%
! CATAGGGGTGGAAATGGGCT+AGG + chr8_1:3794292-3794311 Msa1173380:intron 55.0%
GGCTTAGGCCTTACAAAGCC+CGG - chr8_1:3794323-3794342 None:intergenic 55.0%
! GGCTTTGTAAGGCCTAAGCC+TGG + chr8_1:3794323-3794342 Msa1173380:intron 55.0%
!! CTCATTTTCGAGGCCTGACC+TGG + chr8_1:3794395-3794414 Msa1173380:intron 55.0%
AGCTTAATAGGTCGGCCCGA+TGG + chr8_1:3794686-3794705 Msa1173380:intron 55.0%
GCTTAATAGGTCGGCCCGAT+GGG + chr8_1:3794687-3794706 Msa1173380:intron 55.0%
TAAACGAGCTGGGCCGAGTT+AGG + chr8_1:3794792-3794811 Msa1173380:intron 55.0%
ATTAGGGGTGGGAATAGGCC+AGG - chr8_1:3794855-3794874 None:intergenic 55.0%
CTCGCCCTTGTACGATCCAA+TGG + chr8_1:3796762-3796781 Msa1173380:CDS 55.0%
! GGAGCAAGTTGAGCTGCAGC+TGG - chr8_1:3791595-3791614 None:intergenic 60.0%
!! TGCGGTCGGTGTCGACAATG+AGG + chr8_1:3793746-3793765 Msa1173380:intron 60.0%
ACGGGTAATAGGCCAGGCTC+AGG - chr8_1:3794369-3794388 None:intergenic 60.0%
! GTCGGCCCGATGGGCTTAAT+AGG + chr8_1:3794696-3794715 Msa1173380:intron 60.0%
GAGCTAGGATCGATGCACCC+TGG - chr8_1:3796745-3796764 None:intergenic 60.0%
GGATCGTACAAGGGCGAGCT+AGG - chr8_1:3796760-3796779 None:intergenic 60.0%
!! GGGTGGAAATGGGCTAGGCC+AGG + chr8_1:3794297-3794316 Msa1173380:intron 65.0%
!! GGAAATGGGCTAGGCCAGGC+CGG + chr8_1:3794301-3794320 Msa1173380:intron 65.0%
!! GAAATGGGCTAGGCCAGGCC+GGG + chr8_1:3794302-3794321 Msa1173380:intron 65.0%
! AGGCCAGGCCGGGCTTTGTA+AGG + chr8_1:3794312-3794331 Msa1173380:intron 65.0%
AGGCCTTACAAAGCCCGGCC+TGG - chr8_1:3794318-3794337 None:intergenic 65.0%
GCTAGTCCGTAGGCCCCTGT+CGG + chr8_1:3794825-3794844 Msa1173380:intron 65.0%
ATAGGCCAGGCCGTCCGACA+GGG - chr8_1:3794842-3794861 None:intergenic 65.0%
AATAGGCCAGGCCGTCCGAC+AGG - chr8_1:3794843-3794862 None:intergenic 65.0%
GTCCGTAGGCCCCTGTCGGA+CGG + chr8_1:3794829-3794848 Msa1173380:intron 70.0%
TAGGCCAGGCCGTCCGACAG+GGG - chr8_1:3794841-3794860 None:intergenic 70.0%
GGCCGTCCGACAGGGGCCTA+CGG - chr8_1:3794834-3794853 None:intergenic 75.0%
TAGGCCCCTGTCGGACGGCC+TGG + chr8_1:3794834-3794853 Msa1173380:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 3789945 3797062 3789945 ID=Msa1173380;Name=Msa1173380
chr8_1 mRNA 3789945 3797062 3789945 ID=Msa1173380-mRNA-1;Parent=Msa1173380;Name=Msa1173380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=158|0.85|0.87|1|0.71|0.87|8|222|276
chr8_1 exon 3789945 3790196 3789945 ID=Msa1173380-mRNA-1:exon:1350;Parent=Msa1173380-mRNA-1
chr8_1 exon 3790798 3790921 3790798 ID=Msa1173380-mRNA-1:exon:1351;Parent=Msa1173380-mRNA-1
chr8_1 exon 3791393 3791477 3791393 ID=Msa1173380-mRNA-1:exon:1352;Parent=Msa1173380-mRNA-1
chr8_1 exon 3791565 3791643 3791565 ID=Msa1173380-mRNA-1:exon:1353;Parent=Msa1173380-mRNA-1
chr8_1 exon 3795348 3795446 3795348 ID=Msa1173380-mRNA-1:exon:1354;Parent=Msa1173380-mRNA-1
chr8_1 exon 3795671 3795783 3795671 ID=Msa1173380-mRNA-1:exon:1355;Parent=Msa1173380-mRNA-1
chr8_1 exon 3796412 3796522 3796412 ID=Msa1173380-mRNA-1:exon:1356;Parent=Msa1173380-mRNA-1
chr8_1 exon 3796715 3797062 3796715 ID=Msa1173380-mRNA-1:exon:1357;Parent=Msa1173380-mRNA-1
chr8_1 five_prime_UTR 3789945 3790102 3789945 ID=Msa1173380-mRNA-1:five_prime_utr;Parent=Msa1173380-mRNA-1
chr8_1 CDS 3790103 3790196 3790103 ID=Msa1173380-mRNA-1:cds;Parent=Msa1173380-mRNA-1
chr8_1 CDS 3790798 3790921 3790798 ID=Msa1173380-mRNA-1:cds;Parent=Msa1173380-mRNA-1
chr8_1 CDS 3791393 3791477 3791393 ID=Msa1173380-mRNA-1:cds;Parent=Msa1173380-mRNA-1
chr8_1 CDS 3791565 3791643 3791565 ID=Msa1173380-mRNA-1:cds;Parent=Msa1173380-mRNA-1
chr8_1 CDS 3795348 3795446 3795348 ID=Msa1173380-mRNA-1:cds;Parent=Msa1173380-mRNA-1
chr8_1 CDS 3795671 3795783 3795671 ID=Msa1173380-mRNA-1:cds;Parent=Msa1173380-mRNA-1
chr8_1 CDS 3796412 3796522 3796412 ID=Msa1173380-mRNA-1:cds;Parent=Msa1173380-mRNA-1
chr8_1 CDS 3796715 3796840 3796715 ID=Msa1173380-mRNA-1:cds;Parent=Msa1173380-mRNA-1
chr8_1 three_prime_UTR 3796841 3797062 3796841 ID=Msa1173380-mRNA-1:three_prime_utr;Parent=Msa1173380-mRNA-1
Gene Sequence

>Msa1173380

ATGGCTGCAACTAATGCTTCAATCTTTGCTTCTTCCACTCAACCTTGCTTCTCTGTCACAACCTCTCGAAGTCATAGCATAACAAACACGTTTGGAAGTAATTTTCTCAATGTTTCACTACCAAGATGTTACCCTTTGAAGGAAAGACATATGAAAGTTAAGCATGTAGTCAGTGCTGCTGCTGCGGTTGCAACAAGTCCTACTGAAGAAATTCAAGAGTACAAGCTTCCTTCATGGGCTATGTTTGAACTTGGGAAGGCTGCTGTATACTGGAAAACCACTAACGGTGTTGCTCCTACTTCAGGTGAAAAGCTTAAACTGTTCTATAATCCAGCTGCAGCTCAACTTGCTCCTAGTGAAGAATTTGGAATTGCTTTTAATGGTGGTTTTAATCAACCAATTATGTGCGGTGGTGAACCAAGAGCTATGCTCAGAAAGGATAGAGGCAAAGCTGATTCCCCTATATACAGCATTCAAATATCTTTAAACTTGATTTTCTCATTTACAAATGGAGTGGATTGGGATGGTCCATATAGACTGCAATTTCAAGTTCCTAAACCTTTACAGAACAAGCCAATTGAATTCTTTAACGAGGGCTTGGCAGAGGAACTAAGTAAAGAAGGAGCATGTGAACAAGCAATATTTCCAGACACAACTGCAGTTATAGAAAAATGTGCTATGATTGGTAATTTATCAAAAGAAGGGGGTGATCGCTGCGAACTGAATCTTGTTCCAGGGTGCATCGATCCTAGCTCGCCCTTGTACGATCCAATGGCCAATGTGGATGATGGATCATGTCCAATTGAAGTGGATTCTGATTCTGATGAATAA

Protein sequence

>Msa1173380

MAATNASIFASSTQPCFSVTTSRSHSITNTFGSNFLNVSLPRCYPLKERHMKVKHVVSAAAAVATSPTEEIQEYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAAQLAPSEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQISLNLIFSFTNGVDWDGPYRLQFQVPKPLQNKPIEFFNEGLAEELSKEGACEQAIFPDTTAVIEKCAMIGNLSKEGGDRCELNLVPGCIDPSSPLYDPMANVDDGSCPIEVDSDSDE*