AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0530340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530340 MtrunA17_Chr4g0003221 95.730 281 6 2 1 276 1 280 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530340 AT3G15840.1 63.214 280 83 5 2 276 4 268 5.30e-126 359
Msa0530340 AT3G15840.3 62.500 280 85 5 2 276 4 268 5.08e-124 354
Msa0530340 AT3G15840.5 69.583 240 62 3 42 276 15 248 1.51e-122 350
Msa0530340 AT3G15840.2 62.143 280 83 6 2 276 4 265 1.46e-121 348
Msa0530340 AT3G15840.4 72.770 213 52 2 69 276 3 214 1.94e-115 330

Find 77 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATATTGGATTGAAATA+TGG 0.186864 4_1:+4375791 None:intergenic
CATATTTCAATCCAATATTA+AGG 0.230501 4_1:-4375790 Msa0530340:five_prime_UTR
CTTGCTCCTAGTGAAGAATT+TGG 0.251751 4_1:-4374242 Msa0530340:CDS
GGTTCACCACCGCACATAAT+TGG 0.252908 4_1:+4370487 None:intergenic
ATATTTGAATGCTGTATATA+GGG 0.271703 4_1:+4370425 None:intergenic
TATAGTAGGAAACAGATAAA+AGG 0.288727 4_1:+4375882 None:intergenic
TACTCCACTATATACTTTCA+TGG 0.299352 4_1:-4368806 None:intergenic
ATACTATAGGGAAGAAATTA+TGG 0.304115 4_1:-4368854 Msa0530340:three_prime_UTR
CCCTTTCAATACTATACTAT+AGG 0.316700 4_1:-4368867 Msa0530340:three_prime_UTR
CATATTTGAATGCTGTATAT+AGG 0.316965 4_1:+4370424 None:intergenic
AAATTATGGTTCATAGTATA+AGG 0.317202 4_1:-4368840 Msa0530340:three_prime_UTR
TGCGAACTGAATCTTGTTCC+AGG 0.318141 4_1:-4369125 Msa0530340:CDS
ACTTGAAATTGCAGTCTATA+TGG 0.338184 4_1:+4370131 None:intergenic
GGCTTGTTCTGTAAAGGTTT+AGG 0.359246 4_1:+4370107 None:intergenic
TTGGGAAGGCTGCTGTATAC+TGG 0.369413 4_1:-4374424 Msa0530340:CDS
TCTATAACTGCAGTTGTGTC+TGG 0.373918 4_1:+4369386 None:intergenic
TTTCCTACTATATCTATCTA+TGG 0.373940 4_1:-4375871 Msa0530340:five_prime_UTR
ACCAAGATGTTACCCTTTGA+AGG 0.390463 4_1:-4375026 Msa0530340:CDS
ACCTCGTTAAAGAATTCAAT+TGG 0.407330 4_1:+4370086 None:intergenic
ATAGGTACAAGCTTCCTTCA+TGG 0.408186 4_1:-4374460 Msa0530340:intron
GAATCAGAATCCACTTCAAT+TGG 0.409503 4_1:+4369041 None:intergenic
TCCTTCAAAGGGTAACATCT+TGG 0.415937 4_1:+4375025 None:intergenic
ATTTACAAATGGAGTGGATT+GGG 0.417672 4_1:-4370159 Msa0530340:CDS
CATTTACAAATGGAGTGGAT+TGG 0.427350 4_1:-4370160 Msa0530340:CDS
ATTGGTAATTTATCAAAAGA+AGG 0.427374 4_1:-4369350 Msa0530340:CDS
AGTAGGAGCAACACCGTTAG+TGG 0.435161 4_1:+4374397 None:intergenic
TTCATATGTCTTTCCTTCAA+AGG 0.436295 4_1:+4375013 None:intergenic
TCATGGGCTATGTTTGAACT+TGG 0.438144 4_1:-4374443 Msa0530340:CDS
TCAATTGGCTTGTTCTGTAA+AGG 0.440223 4_1:+4370101 None:intergenic
CCTTTCAATACTATACTATA+GGG 0.446149 4_1:-4368866 Msa0530340:three_prime_UTR
TCCTTTCTGAGCATAGCTCT+TGG 0.448560 4_1:+4370466 None:intergenic
TCATATGTCTTTCCTTCAAA+GGG 0.449365 4_1:+4375014 None:intergenic
TTGGTAATTTATCAAAAGAA+GGG 0.469450 4_1:-4369349 Msa0530340:CDS
CCTATAGTATAGTATTGAAA+GGG 0.469525 4_1:+4368867 None:intergenic
TAGGTACAAGCTTCCTTCAT+GGG 0.479108 4_1:-4374459 Msa0530340:CDS
CATAGCATAACAAACACGTT+TGG 0.480434 4_1:-4375673 Msa0530340:intron
GGAGCAAGTTGAGCTGCAGC+TGG 0.485205 4_1:+4374257 None:intergenic
AATGCCATGAAAGTATATAG+TGG 0.494424 4_1:+4368802 None:intergenic
GGATCGTACAAGGGCGAGCT+AGG 0.495175 4_1:+4369092 None:intergenic
AATATCATACTTACTGAAGT+AGG 0.495204 4_1:+4374380 None:intergenic
CCATCATCCACATTGGCCAT+TGG 0.506760 4_1:+4369071 None:intergenic
TGTCCATAGATAGATATAGT+AGG 0.510926 4_1:+4375868 None:intergenic
TAGTAGTTAGCACTGAACTT+TGG 0.510984 4_1:-4368900 Msa0530340:three_prime_UTR
CCCTATAGTATAGTATTGAA+AGG 0.512156 4_1:+4368866 None:intergenic
GCAGAGGAACTAAGTAAAGA+AGG 0.513099 4_1:-4369431 Msa0530340:CDS
ATTGGCCATTGGATCGTACA+AGG 0.518905 4_1:+4369082 None:intergenic
GGCTATGTTTGAACTTGGGA+AGG 0.522989 4_1:-4374438 Msa0530340:CDS
GCAATTCCAAATTCTTCACT+AGG 0.523402 4_1:+4374236 None:intergenic
CCAATGGCCAATGTGGATGA+TGG 0.523811 4_1:-4369071 Msa0530340:CDS
TTTCTCATTTACAAATGGAG+TGG 0.538464 4_1:-4370165 Msa0530340:CDS
CATGGGCTATGTTTGAACTT+GGG 0.542521 4_1:-4374442 Msa0530340:CDS
CTCGCCCTTGTACGATCCAA+TGG 0.543891 4_1:-4369087 Msa0530340:CDS
TACTCTTGAATTTCTTCAGT+AGG 0.550843 4_1:+4374947 None:intergenic
TTTGTTGTAGGGCTTGGCAG+AGG 0.558067 4_1:-4369447 Msa0530340:intron
GACAGAGAAGCAAGGTTGAG+TGG 0.559534 4_1:+4375711 None:intergenic
GCTATGCTCAGAAAGGATAG+AGG 0.573110 4_1:-4370460 Msa0530340:CDS
TATTTGAATGCTGTATATAG+GGG 0.579872 4_1:+4370426 None:intergenic
GCGAACTGAATCTTGTTCCA+GGG 0.581743 4_1:-4369124 Msa0530340:CDS
ACCAAGAGCTATGCTCAGAA+AGG 0.582588 4_1:-4370467 Msa0530340:CDS
TGTAGTCAGTGCTGCTGCTG+CGG 0.582718 4_1:-4374981 Msa0530340:CDS
TGGTAATTTATCAAAAGAAG+GGG 0.588705 4_1:-4369348 Msa0530340:intron
AGTTCAAACATAGCCCATGA+AGG 0.591842 4_1:+4374446 None:intergenic
AATCAACCAATTATGTGCGG+TGG 0.594257 4_1:-4370493 Msa0530340:CDS
AACTTGTTAGTACATAAATG+AGG 0.601227 4_1:-4368955 Msa0530340:three_prime_UTR
ACAAATGGAGTGGATTGGGA+TGG 0.612781 4_1:-4370155 Msa0530340:CDS
TGTTATGCTATGACTTCGAG+AGG 0.628193 4_1:+4375684 None:intergenic
TGGATCATGTCCAATTGAAG+TGG 0.628823 4_1:-4369051 Msa0530340:CDS
TTTAATCAACCAATTATGTG+CGG 0.634307 4_1:-4370496 Msa0530340:CDS
ACATGATCCATCATCCACAT+TGG 0.636100 4_1:+4369064 None:intergenic
GTATACTGGAAAACCACTAA+CGG 0.651682 4_1:-4374410 Msa0530340:CDS
GAGCTAGGATCGATGCACCC+TGG 0.654050 4_1:+4369107 None:intergenic
GCCAATTGAATTCTTTAACG+AGG 0.659443 4_1:-4370087 Msa0530340:intron
GAGGTTGTGACAGAGAAGCA+AGG 0.664017 4_1:+4375703 None:intergenic
TCAGTGCTAACTACTAACTG+TGG 0.664353 4_1:+4368907 None:intergenic
CTATAGTATAGTATTGAAAG+GGG 0.674545 4_1:+4368868 None:intergenic
TTGGCCATTGGATCGTACAA+GGG 0.682955 4_1:+4369083 None:intergenic
GTACGATCCAATGGCCAATG+TGG 0.734004 4_1:-4369078 Msa0530340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTATTTATTTTTTAATAG+TGG - chr4_1:4369147-4369166 Msa0530340:intron 10.0%
!!! ACCTTTTTTTTTATAAATTT+TGG - chr4_1:4370402-4370421 Msa0530340:intron 10.0%
!! TTTACAATTTAAATAAGTTA+TGG + chr4_1:4370782-4370801 None:intergenic 10.0%
!!! ACTAATTTATATTTTCATTT+GGG + chr4_1:4371969-4371988 None:intergenic 10.0%
!!! TACTAATTTATATTTTCATT+TGG + chr4_1:4371970-4371989 None:intergenic 10.0%
!!! AATTATTTTATTGCAATTTT+TGG - chr4_1:4372745-4372764 Msa0530340:intron 10.0%
!!! ATTATTTTATTGCAATTTTT+GGG - chr4_1:4372746-4372765 Msa0530340:intron 10.0%
!! ATTCATAAATTGTTATAAAA+TGG - chr4_1:4372774-4372793 Msa0530340:intron 10.0%
!! ATAAAAGTAAAAAAATACTT+TGG - chr4_1:4375219-4375238 Msa0530340:intron 10.0%
!! TAAAAGTAAAAAAATACTTT+GGG - chr4_1:4375220-4375239 Msa0530340:intron 10.0%
!!! ATATTTACTCTTTTTTTATA+AGG - chr4_1:4375420-4375439 Msa0530340:intron 10.0%
!!! ATTTATTTTTTAATAGTGGA+CGG - chr4_1:4369151-4369170 Msa0530340:intron 15.0%
!! TAGAAATACAGAAAATATAA+AGG - chr4_1:4370017-4370036 Msa0530340:intron 15.0%
!! GTTCATATATTTATTTATTG+TGG + chr4_1:4370129-4370148 None:intergenic 15.0%
!! ATAAACATTAATAGGATATA+TGG + chr4_1:4370234-4370253 None:intergenic 15.0%
!! TATATCCTATTAATGTTTAT+AGG - chr4_1:4370234-4370253 Msa0530340:intron 15.0%
!! TATTATTGAGTTAATTCATT+AGG - chr4_1:4370351-4370370 Msa0530340:intron 15.0%
!! GCCAAAATTTATAAAAAAAA+AGG + chr4_1:4370406-4370425 None:intergenic 15.0%
!!! TTTTTTTTATAAATTTTGGC+AGG - chr4_1:4370406-4370425 Msa0530340:intron 15.0%
!!! TTTTTTTATAAATTTTGGCA+GGG - chr4_1:4370407-4370426 Msa0530340:intron 15.0%
!!! GTTGTAAAGTTTTTAAAAAA+GGG + chr4_1:4371249-4371268 None:intergenic 15.0%
!!! TGTTGTAAAGTTTTTAAAAA+AGG + chr4_1:4371250-4371269 None:intergenic 15.0%
!!! TATACTAAAGTTTTATCAAA+TGG + chr4_1:4371334-4371353 None:intergenic 15.0%
!!! AATGATTGATTTATTAGTTA+TGG + chr4_1:4371431-4371450 None:intergenic 15.0%
!! GAAAAATTATAATCAAAATC+AGG - chr4_1:4372493-4372512 Msa0530340:intron 15.0%
!! TCTTAAGATAAAATAATAGA+AGG - chr4_1:4373116-4373135 Msa0530340:intron 15.0%
!! TAAATAATGAATTCTTACAA+AGG - chr4_1:4373417-4373436 Msa0530340:intron 15.0%
!! AACTTCAAAAATATCAATAA+TGG - chr4_1:4373506-4373525 Msa0530340:intron 15.0%
!! TTATATATGAAAAGCTTAAT+AGG - chr4_1:4373537-4373556 Msa0530340:intron 15.0%
!! TAATTTAAATTTATCTCAAG+AGG - chr4_1:4374017-4374036 Msa0530340:intron 15.0%
!!! TTTTCTAGAACAATTTAATA+AGG - chr4_1:4374053-4374072 Msa0530340:intron 15.0%
!!! TTTATTTTTTATGATCAAGA+GGG + chr4_1:4375204-4375223 None:intergenic 15.0%
!!! TTTTATTTTTTATGATCAAG+AGG + chr4_1:4375205-4375224 None:intergenic 15.0%
!! AAAAGTAAAAAAATACTTTG+GGG - chr4_1:4375221-4375240 Msa0530340:intron 15.0%
!! CTTAATATTGGATTGAAATA+TGG + chr4_1:4368924-4368943 None:intergenic 20.0%
!! CATATTTCAATCCAATATTA+AGG - chr4_1:4368922-4368941 Msa0530340:three_prime_UTR 20.0%
!! AAAAGAAAAAGAGAGAAAAA+AGG + chr4_1:4369074-4369093 None:intergenic 20.0%
!! TAATATTCTATCCTATAACA+TGG + chr4_1:4369352-4369371 None:intergenic 20.0%
!!! AATATCATAGTCTAGTTTAA+TGG + chr4_1:4369393-4369412 None:intergenic 20.0%
!!! TATTCAAACATTTTTTAACC+AGG + chr4_1:4369534-4369553 None:intergenic 20.0%
!! TTTGTTCATGTATTTGTTTA+TGG + chr4_1:4370083-4370102 None:intergenic 20.0%
!! TTGTACCTATAAACATTAAT+AGG + chr4_1:4370242-4370261 None:intergenic 20.0%
!!! TTTATTTTTTAGATTCGAAC+AGG + chr4_1:4370722-4370741 None:intergenic 20.0%
!!! TTTGGTACTTCTTTTTATTA+GGG + chr4_1:4370746-4370765 None:intergenic 20.0%
!!! TTTTGGTACTTCTTTTTATT+AGG + chr4_1:4370747-4370766 None:intergenic 20.0%
!! TATTAGTTAGAAGTTGTATT+GGG + chr4_1:4370950-4370969 None:intergenic 20.0%
!! ATATTAGTTAGAAGTTGTAT+TGG + chr4_1:4370951-4370970 None:intergenic 20.0%
!!! TTTAAAAAAGGGATTAGTAA+AGG + chr4_1:4371238-4371257 None:intergenic 20.0%
!!! ATTGATTTATTAGTTATGGA+AGG + chr4_1:4371427-4371446 None:intergenic 20.0%
!! TTGAAAAAAGCTTATGAAAA+TGG + chr4_1:4372144-4372163 None:intergenic 20.0%
!!! ATTAACCTACTATTAATTTG+TGG + chr4_1:4372364-4372383 None:intergenic 20.0%
!! ATCAAAATCATTGAAAATGA+AGG - chr4_1:4372524-4372543 Msa0530340:intron 20.0%
!! TCAAAATCATTGAAAATGAA+GGG - chr4_1:4372525-4372544 Msa0530340:intron 20.0%
!! CAAAAAGAATGAAAAGTTTA+GGG - chr4_1:4372570-4372589 Msa0530340:intron 20.0%
!!! TTTTTCATAGTTGAGTATAT+GGG + chr4_1:4372899-4372918 None:intergenic 20.0%
!!! TTTTTTCATAGTTGAGTATA+TGG + chr4_1:4372900-4372919 None:intergenic 20.0%
!!! CATAAAATAGGCTTTTAAAT+AGG + chr4_1:4373314-4373333 None:intergenic 20.0%
!! TTATTTAGTAGCTGATATAT+TGG + chr4_1:4373453-4373472 None:intergenic 20.0%
!! CTAAATAACCAATTATATGA+AGG - chr4_1:4373465-4373484 Msa0530340:intron 20.0%
!! TGATATTCAAAACTACAAAT+AGG - chr4_1:4373926-4373945 Msa0530340:intron 20.0%
!! GATATTCAAAACTACAAATA+GGG - chr4_1:4373927-4373946 Msa0530340:intron 20.0%
!! ATATTCAAAACTACAAATAG+GGG - chr4_1:4373928-4373947 Msa0530340:intron 20.0%
!!! AGTTTTAATTTTGCATGTTT+AGG - chr4_1:4374189-4374208 Msa0530340:intron 20.0%
!! ATATTTGAATGCTGTATATA+GGG + chr4_1:4374290-4374309 None:intergenic 20.0%
!!! TATGTTACTTCAATTTCTAA+CGG - chr4_1:4374329-4374348 Msa0530340:intron 20.0%
!!! AGTTTTGACTAAAATTACAT+TGG - chr4_1:4374434-4374453 Msa0530340:CDS 20.0%
!! TTACATTGGACAAAATTATT+CGG - chr4_1:4374448-4374467 Msa0530340:CDS 20.0%
!! TAAAGCTACACAAAAAAAAA+AGG + chr4_1:4374488-4374507 None:intergenic 20.0%
!!! TTGATTTTCTCATTTACAAA+TGG - chr4_1:4374542-4374561 Msa0530340:intron 20.0%
!! AGAAATGTGAAAAATACAAA+GGG + chr4_1:4374738-4374757 None:intergenic 20.0%
!! AAGAAATGTGAAAAATACAA+AGG + chr4_1:4374739-4374758 None:intergenic 20.0%
!! CAAATTTAATACACAAACAA+AGG + chr4_1:4374821-4374840 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - chr4_1:4374858-4374877 Msa0530340:intron 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - chr4_1:4374859-4374878 Msa0530340:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr4_1:4374860-4374879 Msa0530340:intron 20.0%
!! GGACAAAAATAAAATCAAAT+GGG - chr4_1:4374942-4374961 Msa0530340:intron 20.0%
!! AGATATTTCTTGAACAAAAA+TGG - chr4_1:4375050-4375069 Msa0530340:CDS 20.0%
!!! ATTGGTAATTTATCAAAAGA+AGG - chr4_1:4375362-4375381 Msa0530340:intron 20.0%
!!! TTGGTAATTTATCAAAAGAA+GGG - chr4_1:4375363-4375382 Msa0530340:intron 20.0%
!! TTAAATCATTGTAATAGAGT+TGG - chr4_1:4375522-4375541 Msa0530340:intron 20.0%
!! AAATTATGGTTCATAGTATA+AGG - chr4_1:4375872-4375891 Msa0530340:five_prime_UTR 20.0%
! TATAGTAGGAAACAGATAAA+AGG + chr4_1:4368833-4368852 None:intergenic 25.0%
! TTTCCTACTATATCTATCTA+TGG - chr4_1:4368841-4368860 Msa0530340:three_prime_UTR 25.0%
!!! TTTTGGTGATTCCTTAATAT+TGG + chr4_1:4368936-4368955 None:intergenic 25.0%
!! ATTTGATTATTTGTTGACTG+AGG - chr4_1:4369186-4369205 Msa0530340:intron 25.0%
! ATCAATTCAATGATAGACTT+AGG + chr4_1:4369233-4369252 None:intergenic 25.0%
! TATAAGAAGTTCCATGTTAT+AGG - chr4_1:4369338-4369357 Msa0530340:intron 25.0%
!!! TGATATTTTAAGCAAAGTCT+CGG - chr4_1:4369406-4369425 Msa0530340:CDS 25.0%
! GAAAGGATAAATCATACTTA+AGG - chr4_1:4369463-4369482 Msa0530340:intron 25.0%
! CAATGGAGAAAAGTTAATAT+AGG - chr4_1:4369820-4369839 Msa0530340:intron 25.0%
!!! GTTTTAAAAACTGACTCAAA+TGG + chr4_1:4369992-4370011 None:intergenic 25.0%
! CATTAATAGGATATATGGTA+GGG + chr4_1:4370229-4370248 None:intergenic 25.0%
! ACATTAATAGGATATATGGT+AGG + chr4_1:4370230-4370249 None:intergenic 25.0%
! AATATCATACTTACTGAAGT+AGG + chr4_1:4370335-4370354 None:intergenic 25.0%
!!! GAATTTGGAATTGCTTTTAA+TGG - chr4_1:4370485-4370504 Msa0530340:CDS 25.0%
!! CATTTTCCATAACAATTGTA+TGG - chr4_1:4370545-4370564 Msa0530340:intron 25.0%
!!! AGAGAGAGTATATGTTATTT+TGG - chr4_1:4370594-4370613 Msa0530340:intron 25.0%
!! TTGGTACTTCTTTTTATTAG+GGG + chr4_1:4370745-4370764 None:intergenic 25.0%
!!! TATGGCTCTTTTAGAATTTT+TGG + chr4_1:4370764-4370783 None:intergenic 25.0%
!! GCTCTTTTTGATGTTATTAA+TGG + chr4_1:4370807-4370826 None:intergenic 25.0%
! TATTTCTTATGTTATCTACG+AGG + chr4_1:4370833-4370852 None:intergenic 25.0%
!! TGATGTTATTGATTAGAACA+TGG + chr4_1:4370861-4370880 None:intergenic 25.0%
!!! ACTAAAGTAGTTTGAGTTTT+TGG + chr4_1:4370910-4370929 None:intergenic 25.0%
! AAAGGTCAATTAACAAATGA+GGG + chr4_1:4371220-4371239 None:intergenic 25.0%
! TAAAGGTCAATTAACAAATG+AGG + chr4_1:4371221-4371240 None:intergenic 25.0%
! TATATTTGATCCGAAGAATT+GGG + chr4_1:4371470-4371489 None:intergenic 25.0%
! ATATATTTGATCCGAAGAAT+TGG + chr4_1:4371471-4371490 None:intergenic 25.0%
! ATATCAAACGAATGTTCTAA+TGG - chr4_1:4371487-4371506 Msa0530340:intron 25.0%
! TATCAAACGAATGTTCTAAT+GGG - chr4_1:4371488-4371507 Msa0530340:intron 25.0%
!!! AATGTTGATTTGGAAAATAG+AGG + chr4_1:4371598-4371617 None:intergenic 25.0%
! TACAACTGAGAATAGTAATA+TGG + chr4_1:4371629-4371648 None:intergenic 25.0%
!! AAGATTAGAAAGTATGAATC+TGG + chr4_1:4371802-4371821 None:intergenic 25.0%
! GATTCATACTTTCTAATCTT+AGG - chr4_1:4371802-4371821 Msa0530340:intron 25.0%
!!! TGGCTTAATCTTTTGATTAT+AGG + chr4_1:4372008-4372027 None:intergenic 25.0%
! TGCTATATATTAAGCATGTT+TGG - chr4_1:4372042-4372061 Msa0530340:intron 25.0%
!!! ATAAGTTTTTTGAGACTGTT+TGG - chr4_1:4372093-4372112 Msa0530340:intron 25.0%
!!! TAAGTTTTTTGAGACTGTTT+GGG - chr4_1:4372094-4372113 Msa0530340:intron 25.0%
! TATAAGCACTTATCATGATA+AGG - chr4_1:4372282-4372301 Msa0530340:intron 25.0%
! ATAAGCACTTATCATGATAA+GGG - chr4_1:4372283-4372302 Msa0530340:intron 25.0%
! GTATCAAAGTTATATGCATT+CGG + chr4_1:4372468-4372487 None:intergenic 25.0%
! GCAAAAAGAATGAAAAGTTT+AGG - chr4_1:4372569-4372588 Msa0530340:intron 25.0%
! AATTGACCTTAATAATTGTG+AGG - chr4_1:4372836-4372855 Msa0530340:intron 25.0%
!! TTTTCATAGTTGAGTATATG+GGG + chr4_1:4372898-4372917 None:intergenic 25.0%
! TCAAAAGCTACTCAATTTAT+AGG + chr4_1:4373007-4373026 None:intergenic 25.0%
!! TAAAAGCCTATTTTATGCTA+AGG - chr4_1:4373317-4373336 Msa0530340:intron 25.0%
!! TAATAAGTTTTGCCCTATAT+AGG + chr4_1:4373367-4373386 None:intergenic 25.0%
! ATATAGGGCAAAACTTATTA+AGG - chr4_1:4373367-4373386 Msa0530340:intron 25.0%
! ATATGAAAAGCTTAATAGGT+CGG - chr4_1:4373541-4373560 Msa0530340:intron 25.0%
! TAAGGCCTATTTAATTAAAC+AGG + chr4_1:4373608-4373627 None:intergenic 25.0%
!!! TTTTTCTCTCCTTTTTTTAG+AGG - chr4_1:4373813-4373832 Msa0530340:intron 25.0%
!! TAACATGTTCCTCTAAAAAA+AGG + chr4_1:4373825-4373844 None:intergenic 25.0%
!! CACCTTTATAATTTAGAGTT+CGG + chr4_1:4373869-4373888 None:intergenic 25.0%
!!! TTTTTAACATTTTGGTTCTC+AGG + chr4_1:4373899-4373918 None:intergenic 25.0%
! TATTCAAAACTACAAATAGG+GGG - chr4_1:4373929-4373948 Msa0530340:intron 25.0%
! ATATTGTCTTAAGTAGACTA+TGG - chr4_1:4374113-4374132 Msa0530340:intron 25.0%
!!! TTTAATTTTGCATGTTTAGG+TGG - chr4_1:4374192-4374211 Msa0530340:intron 25.0%
! TTTAATCAACCAATTATGTG+CGG - chr4_1:4374216-4374235 Msa0530340:intron 25.0%
! TATTTGAATGCTGTATATAG+GGG + chr4_1:4374289-4374308 None:intergenic 25.0%
! CATATTTGAATGCTGTATAT+AGG + chr4_1:4374291-4374310 None:intergenic 25.0%
! AGTAACATATTACCATGTTT+AGG + chr4_1:4374318-4374337 None:intergenic 25.0%
! AAATGTGAAAAATACAAAGG+GGG + chr4_1:4374736-4374755 None:intergenic 25.0%
! GAAATGTGAAAAATACAAAG+GGG + chr4_1:4374737-4374756 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr4_1:4374870-4374889 Msa0530340:intron 25.0%
! ATGCATCTAGTAATTTGAAA+AGG - chr4_1:4374906-4374925 Msa0530340:intron 25.0%
! TGCATCTAGTAATTTGAAAA+GGG - chr4_1:4374907-4374926 Msa0530340:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG - chr4_1:4374941-4374960 Msa0530340:intron 25.0%
! CAAAAATAAAATCAAATGGG+TGG - chr4_1:4374945-4374964 Msa0530340:intron 25.0%
!! TATTTCTTTTAGTCGTGAAA+TGG + chr4_1:4375177-4375196 None:intergenic 25.0%
!! AGTGTATTATTCTTTGTTGT+AGG - chr4_1:4375253-4375272 Msa0530340:intron 25.0%
!! GTGTATTATTCTTTGTTGTA+GGG - chr4_1:4375254-4375273 Msa0530340:intron 25.0%
! ATAGAAAAATGTGCTATGAT+TGG - chr4_1:4375344-4375363 Msa0530340:intron 25.0%
! TGGTAATTTATCAAAAGAAG+GGG - chr4_1:4375364-4375383 Msa0530340:intron 25.0%
!! TTGATCGAAAAAATCTTTTC+AGG - chr4_1:4375556-4375575 Msa0530340:intron 25.0%
!! TGATCGAAAAAATCTTTTCA+GGG - chr4_1:4375557-4375576 Msa0530340:intron 25.0%
!!! AACTTGTTAGTACATAAATG+AGG - chr4_1:4375757-4375776 Msa0530340:exon 25.0%
!! CTATAGTATAGTATTGAAAG+GGG + chr4_1:4375847-4375866 None:intergenic 25.0%
!! CCTATAGTATAGTATTGAAA+GGG + chr4_1:4375848-4375867 None:intergenic 25.0%
! CCTTTCAATACTATACTATA+GGG - chr4_1:4375846-4375865 Msa0530340:five_prime_UTR 25.0%
! ATACTATAGGGAAGAAATTA+TGG - chr4_1:4375858-4375877 Msa0530340:five_prime_UTR 25.0%
TGTCCATAGATAGATATAGT+AGG + chr4_1:4368847-4368866 None:intergenic 30.0%
TCGTAGATGAAAAAAAAACG+TGG - chr4_1:4369438-4369457 Msa0530340:CDS 30.0%
GAAAAAAAAACGTGGTTGAA+AGG - chr4_1:4369446-4369465 Msa0530340:intron 30.0%
AGGATAAATCATACTTAAGG+TGG - chr4_1:4369466-4369485 Msa0530340:intron 30.0%
ACTGAAAACTAATCCTCATT+TGG + chr4_1:4369503-4369522 None:intergenic 30.0%
! AGTTTTCAGTTAAGTAAACC+TGG - chr4_1:4369513-4369532 Msa0530340:intron 30.0%
TCATATGTCTTTCCTTCAAA+GGG + chr4_1:4369701-4369720 None:intergenic 30.0%
TTCATATGTCTTTCCTTCAA+AGG + chr4_1:4369702-4369721 None:intergenic 30.0%
TACTCTTGAATTTCTTCAGT+AGG + chr4_1:4369768-4369787 None:intergenic 30.0%
ATCCAACATTGGTATTAAGT+GGG + chr4_1:4369797-4369816 None:intergenic 30.0%
AATCCAACATTGGTATTAAG+TGG + chr4_1:4369798-4369817 None:intergenic 30.0%
TACCAATGTTGGATTTACAA+TGG - chr4_1:4369803-4369822 Msa0530340:intron 30.0%
!!! CAGTGTTTTGAAAACTGAAA+TGG - chr4_1:4369876-4369895 Msa0530340:intron 30.0%
TCACTGTCTAATTATTTGAG+TGG + chr4_1:4369960-4369979 None:intergenic 30.0%
GTTCATGTATTTGTTTATGG+TGG + chr4_1:4370080-4370099 None:intergenic 30.0%
GTTCTCCAAATTGTTTAAGA+CGG + chr4_1:4370700-4370719 None:intergenic 30.0%
! GTCATCATTCTAACACTTTT+TGG - chr4_1:4370995-4371014 Msa0530340:intron 30.0%
! CTGAGAAAGAATAACCTTTT+GGG + chr4_1:4371054-4371073 None:intergenic 30.0%
! ACTGAGAAAGAATAACCTTT+TGG + chr4_1:4371055-4371074 None:intergenic 30.0%
ATGGTAAGAATATGACTACT+TGG + chr4_1:4371138-4371157 None:intergenic 30.0%
! TTTAGTGATTGGTCACATAT+TGG + chr4_1:4371196-4371215 None:intergenic 30.0%
CGTCTAGAAAGTTTATCTTT+AGG - chr4_1:4371370-4371389 Msa0530340:intron 30.0%
GAAAATAGAGGTGATGTTAA+TGG + chr4_1:4371586-4371605 None:intergenic 30.0%
! GGAGAATGAAAATGTTGATT+TGG + chr4_1:4371608-4371627 None:intergenic 30.0%
TGTTGAAATTCTTGCAAATG+TGG + chr4_1:4371653-4371672 None:intergenic 30.0%
! TGATTTTCAACAGGAATTTG+TGG - chr4_1:4371691-4371710 Msa0530340:intron 30.0%
GAGTTTATTCAATCTCAAAG+AGG + chr4_1:4371745-4371764 None:intergenic 30.0%
TCATACTTTCTAATCTTAGG+AGG - chr4_1:4371805-4371824 Msa0530340:intron 30.0%
! ATTTTCATTTGGGAATTGCT+AGG + chr4_1:4371959-4371978 None:intergenic 30.0%
TTGTGTTATAAGCTGCAAAT+AGG - chr4_1:4372307-4372326 Msa0530340:intron 30.0%
! TAATTTGTGGAAGACAGTAA+CGG + chr4_1:4372351-4372370 None:intergenic 30.0%
GTCTTCCACAAATTAATAGT+AGG - chr4_1:4372356-4372375 Msa0530340:intron 30.0%
TTTCATAGTTGAGTATATGG+GGG + chr4_1:4372897-4372916 None:intergenic 30.0%
CAAACATATTTGTGTGCTTT+AGG + chr4_1:4373393-4373412 None:intergenic 30.0%
AACACAAGCCTTCATATAAT+TGG + chr4_1:4373476-4373495 None:intergenic 30.0%
TCTCTACAAGTGTAGAATTA+GGG + chr4_1:4373734-4373753 None:intergenic 30.0%
ACAACTCTTTAACAGATAGT+TGG + chr4_1:4373772-4373791 None:intergenic 30.0%
GACCGAACTCTAAATTATAA+AGG - chr4_1:4373864-4373883 Msa0530340:intron 30.0%
CAAATATGTGTTCCTAAACA+TGG - chr4_1:4374303-4374322 Msa0530340:intron 30.0%
TTTCTCATTTACAAATGGAG+TGG - chr4_1:4374547-4374566 Msa0530340:intron 30.0%
! ATTTACAAATGGAGTGGATT+GGG - chr4_1:4374553-4374572 Msa0530340:intron 30.0%
ACTTGAAATTGCAGTCTATA+TGG + chr4_1:4374584-4374603 None:intergenic 30.0%
ACCTCGTTAAAGAATTCAAT+TGG + chr4_1:4374629-4374648 None:intergenic 30.0%
AATGTGAAAAATACAAAGGG+GGG + chr4_1:4374735-4374754 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG - chr4_1:4374908-4374927 Msa0530340:intron 30.0%
CATCTAGTAATTTGAAAAGG+GGG - chr4_1:4374909-4374928 Msa0530340:intron 30.0%
AGTCTTAACATAATACCAGA+TGG - chr4_1:4375088-4375107 Msa0530340:intron 30.0%
TAACATAATACCAGATGGTT+TGG - chr4_1:4375093-4375112 Msa0530340:intron 30.0%
ATTTAAAGAGTAACTGCAAG+TGG + chr4_1:4375508-4375527 None:intergenic 30.0%
CCCTTTCAATACTATACTAT+AGG - chr4_1:4375845-4375864 Msa0530340:five_prime_UTR 30.0%
! CCCTATAGTATAGTATTGAA+AGG + chr4_1:4375849-4375868 None:intergenic 30.0%
! CACCAAAAAAGTGTGATACA+TGG - chr4_1:4368948-4368967 Msa0530340:three_prime_UTR 35.0%
!!! AGCCATGTATCACACTTTTT+TGG + chr4_1:4368953-4368972 None:intergenic 35.0%
CATAGCATAACAAACACGTT+TGG - chr4_1:4369039-4369058 Msa0530340:CDS 35.0%
TTCCCACTTAATACCAATGT+TGG - chr4_1:4369792-4369811 Msa0530340:intron 35.0%
CTCCATTGTAAATCCAACAT+TGG + chr4_1:4369808-4369827 None:intergenic 35.0%
GTATACTGGAAAACCACTAA+CGG - chr4_1:4370302-4370321 Msa0530340:intron 35.0%
GCAATTCCAAATTCTTCACT+AGG + chr4_1:4370479-4370498 None:intergenic 35.0%
CTACTGCCATACAATTGTTA+TGG + chr4_1:4370554-4370573 None:intergenic 35.0%
AGCTTACTGATAAGTGTGTA+CGG - chr4_1:4370638-4370657 Msa0530340:intron 35.0%
TAGTAAACTAGACCATAGTC+AGG - chr4_1:4370673-4370692 Msa0530340:intron 35.0%
!!! TGAGTTTTTGGTGCTTCATT+TGG + chr4_1:4370898-4370917 None:intergenic 35.0%
TCATATTGCATTGTCCCAAA+AGG - chr4_1:4371037-4371056 Msa0530340:intron 35.0%
CTGCAAAAGAATCAGACTAT+TGG + chr4_1:4371097-4371116 None:intergenic 35.0%
!! CAAATGAGGGTTTTAGTGAT+TGG + chr4_1:4371207-4371226 None:intergenic 35.0%
!! ATCTTTAGGACCATTCACAA+CGG - chr4_1:4371384-4371403 Msa0530340:intron 35.0%
! ACAACGGACAAATCTCTTTT+AGG - chr4_1:4371400-4371419 Msa0530340:intron 35.0%
GTTAATGACAATGTAGAGCA+GGG + chr4_1:4371517-4371536 None:intergenic 35.0%
TGTTAATGACAATGTAGAGC+AGG + chr4_1:4371518-4371537 None:intergenic 35.0%
GAACAACGAAGATGATAATC+TGG + chr4_1:4371548-4371567 None:intergenic 35.0%
CCTGTTGAAAATCAGAATGT+TGG + chr4_1:4371685-4371704 None:intergenic 35.0%
! CCAACATTCTGATTTTCAAC+AGG - chr4_1:4371682-4371701 Msa0530340:intron 35.0%
CTAATCTTAGGAGGAATCTT+AGG - chr4_1:4371814-4371833 Msa0530340:intron 35.0%
AGTAGTGAGTGAGAAATTTC+AGG + chr4_1:4371866-4371885 None:intergenic 35.0%
! ATAGCAGAGAGAGATTCTTT+TGG + chr4_1:4372028-4372047 None:intergenic 35.0%
AATTTGTGGAAGACAGTAAC+GGG + chr4_1:4372350-4372369 None:intergenic 35.0%
!!! TTGTGAGTGAGTTTTGTTTG+AGG - chr4_1:4372673-4372692 Msa0530340:intron 35.0%
! TTGTTTGAGGCCAAAAAGTT+TGG - chr4_1:4372686-4372705 Msa0530340:intron 35.0%
AGGCCAAAAAGTTTGGTTAA+TGG - chr4_1:4372693-4372712 Msa0530340:intron 35.0%
GGCCAAAAAGTTTGGTTAAT+GGG - chr4_1:4372694-4372713 Msa0530340:intron 35.0%
! AGCCCATTAACCAAACTTTT+TGG + chr4_1:4372699-4372718 None:intergenic 35.0%
ACAAGGCCTCACAATTATTA+AGG + chr4_1:4372845-4372864 None:intergenic 35.0%
AAGTCGATTAAGAGATAGCT+CGG - chr4_1:4372918-4372937 Msa0530340:intron 35.0%
CACTACAAGCATTCTACATA+GGG - chr4_1:4373139-4373158 Msa0530340:intron 35.0%
ACTACAAGCATTCTACATAG+GGG - chr4_1:4373140-4373159 Msa0530340:intron 35.0%
! AGGCTTTTAAATAGGCTTTC+AGG + chr4_1:4373306-4373325 None:intergenic 35.0%
ATGTAAGCCTACTCCTATAT+AGG - chr4_1:4373351-4373370 Msa0530340:intron 35.0%
TGTAAGCCTACTCCTATATA+GGG - chr4_1:4373352-4373371 Msa0530340:intron 35.0%
AAAAAGCCTATTAAGCCCAT+CGG + chr4_1:4373568-4373587 None:intergenic 35.0%
CCTATTTAATTAAACAGGCC+AGG + chr4_1:4373603-4373622 None:intergenic 35.0%
CCTGGCCTGTTTAATTAAAT+AGG - chr4_1:4373600-4373619 Msa0530340:intron 35.0%
! TCAGGCTCAAGCTTTTTATA+AGG + chr4_1:4373626-4373645 None:intergenic 35.0%
ACCTTGTTAATAAACGAGCT+GGG - chr4_1:4373645-4373664 Msa0530340:intron 35.0%
CTCTACAAGTGTAGAATTAG+GGG + chr4_1:4373733-4373752 None:intergenic 35.0%
GTCTCTACAAGTGTAGAATT+AGG + chr4_1:4373735-4373754 None:intergenic 35.0%
GTTTGAATTGACAGTGAGTT+TGG - chr4_1:4374368-4374387 Msa0530340:intron 35.0%
CATTTACAAATGGAGTGGAT+TGG - chr4_1:4374552-4374571 Msa0530340:intron 35.0%
!! TCAATTGGCTTGTTCTGTAA+AGG + chr4_1:4374614-4374633 None:intergenic 35.0%
GCCAATTGAATTCTTTAACG+AGG - chr4_1:4374625-4374644 Msa0530340:intron 35.0%
TTGAAAAGGGGGTTACATTT+AGG - chr4_1:4374920-4374939 Msa0530340:intron 35.0%
TGAAAAGGGGGTTACATTTA+GGG - chr4_1:4374921-4374940 Msa0530340:intron 35.0%
TCAAATGGGTGGTTACATTA+AGG - chr4_1:4374956-4374975 Msa0530340:CDS 35.0%
CAAATGGGTGGTTACATTAA+GGG - chr4_1:4374957-4374976 Msa0530340:CDS 35.0%
!! ATACCAGATGGTTTGGATTT+TGG - chr4_1:4375100-4375119 Msa0530340:intron 35.0%
AATCCAAAATCCAAACCATC+TGG + chr4_1:4375106-4375125 None:intergenic 35.0%
! TTATTCTTTGTTGTAGGGCT+TGG - chr4_1:4375259-4375278 Msa0530340:intron 35.0%
GAATCAGAATCCACTTCAAT+TGG + chr4_1:4375674-4375693 None:intergenic 35.0%
! TAGTAGTTAGCACTGAACTT+TGG - chr4_1:4375812-4375831 Msa0530340:five_prime_UTR 35.0%
TAATGAGAAGAGAGAGAGAG+TGG + chr4_1:4368893-4368912 None:intergenic 40.0%
TGTTATGCTATGACTTCGAG+AGG + chr4_1:4369031-4369050 None:intergenic 40.0%
CACATGACCAATTGCAAAGA+GGG + chr4_1:4369111-4369130 None:intergenic 40.0%
! GCAATTGGTCATGTGGATTA+TGG - chr4_1:4369116-4369135 Msa0530340:CDS 40.0%
CACTTCATAGTTTCTGATGC+AGG - chr4_1:4369639-4369658 Msa0530340:intron 40.0%
ACCAAGATGTTACCCTTTGA+AGG - chr4_1:4369686-4369705 Msa0530340:intron 40.0%
TCCTTCAAAGGGTAACATCT+TGG + chr4_1:4369690-4369709 None:intergenic 40.0%
GTCATTGAACCATGACTTGA+AGG + chr4_1:4369919-4369938 None:intergenic 40.0%
ATAGGTACAAGCTTCCTTCA+TGG - chr4_1:4370252-4370271 Msa0530340:intron 40.0%
TAGGTACAAGCTTCCTTCAT+GGG - chr4_1:4370253-4370272 Msa0530340:intron 40.0%
AGTTCAAACATAGCCCATGA+AGG + chr4_1:4370269-4370288 None:intergenic 40.0%
! TCATGGGCTATGTTTGAACT+TGG - chr4_1:4370269-4370288 Msa0530340:intron 40.0%
! CATGGGCTATGTTTGAACTT+GGG - chr4_1:4370270-4370289 Msa0530340:intron 40.0%
CTTGCTCCTAGTGAAGAATT+TGG - chr4_1:4370470-4370489 Msa0530340:CDS 40.0%
CAGGACCGTCTTAAACAATT+TGG - chr4_1:4370692-4370711 Msa0530340:intron 40.0%
! AGTGATTGGTCACATATTGG+TGG + chr4_1:4371193-4371212 None:intergenic 40.0%
! GAGAGAAGTGTGATAGAGAT+TGG + chr4_1:4371312-4371331 None:intergenic 40.0%
AGAGATTTGTCCGTTGTGAA+TGG + chr4_1:4371397-4371416 None:intergenic 40.0%
!! TCAAGAGCATCCCAATTCTT+CGG - chr4_1:4371457-4371476 Msa0530340:intron 40.0%
CAACGAAGATGATAATCTGG+AGG + chr4_1:4371545-4371564 None:intergenic 40.0%
! TTACTGACTGATTCACTGGA+CGG + chr4_1:4371930-4371949 None:intergenic 40.0%
! TCGTTTACTGACTGATTCAC+TGG + chr4_1:4371934-4371953 None:intergenic 40.0%
GGATGCTTACATGTTGAATG+CGG - chr4_1:4372591-4372610 Msa0530340:intron 40.0%
TAGGGTTACCTTATTGCACA+AGG + chr4_1:4372862-4372881 None:intergenic 40.0%
AGTCGATTAAGAGATAGCTC+GGG - chr4_1:4372919-4372938 Msa0530340:intron 40.0%
! TCTTGATGACACGCGTATAT+TGG + chr4_1:4372976-4372995 None:intergenic 40.0%
TTACAACGAGACTCATGATG+TGG + chr4_1:4373089-4373108 None:intergenic 40.0%
GCACTACAAGCATTCTACAT+AGG - chr4_1:4373138-4373157 Msa0530340:intron 40.0%
ATTCTACATAGGGGTGGAAA+TGG - chr4_1:4373149-4373168 Msa0530340:intron 40.0%
TTCTACATAGGGGTGGAAAT+GGG - chr4_1:4373150-4373169 Msa0530340:intron 40.0%
!!! TAGCATTTTTGAAGTAGGCC+AGG + chr4_1:4373207-4373226 None:intergenic 40.0%
TGGCCTACTTCAAAAATGCT+AGG - chr4_1:4373206-4373225 Msa0530340:intron 40.0%
!!! AGGCCTAGCATTTTTGAAGT+AGG + chr4_1:4373212-4373231 None:intergenic 40.0%
!! ATGAGCATATGACGGGTAAT+AGG + chr4_1:4373243-4373262 None:intergenic 40.0%
CTCGAAAATGAGCATATGAC+GGG + chr4_1:4373250-4373269 None:intergenic 40.0%
CCTCGAAAATGAGCATATGA+CGG + chr4_1:4373251-4373270 None:intergenic 40.0%
! GCTTCATCAGGCCTTTAAAA+AGG + chr4_1:4373284-4373303 None:intergenic 40.0%
GTCAGGCCTTAGCATAAAAT+AGG + chr4_1:4373326-4373345 None:intergenic 40.0%
! GTTTTGCCCTATATAGGAGT+AGG + chr4_1:4373361-4373380 None:intergenic 40.0%
AAAAGCCTATTAAGCCCATC+GGG + chr4_1:4373567-4373586 None:intergenic 40.0%
TAATTAAACAGGCCAGGCTA+AGG + chr4_1:4373597-4373616 None:intergenic 40.0%
GCTCGTTTATTAACAAGGTC+AGG + chr4_1:4373644-4373663 None:intergenic 40.0%
GACCTTGTTAATAAACGAGC+TGG - chr4_1:4373644-4373663 Msa0530340:intron 40.0%
! AGCCTATTTAAGGCCTAACT+CGG + chr4_1:4373671-4373690 None:intergenic 40.0%
ACAAGTGTAGAATTAGGGGT+GGG + chr4_1:4373729-4373748 None:intergenic 40.0%
TACAAGTGTAGAATTAGGGG+TGG + chr4_1:4373730-4373749 None:intergenic 40.0%
AATCAACCAATTATGTGCGG+TGG - chr4_1:4374219-4374238 Msa0530340:intron 40.0%
! GGCTTGTTCTGTAAAGGTTT+AGG + chr4_1:4374608-4374627 None:intergenic 40.0%
ACAAAGGGGGGTTACATTAA+GGG + chr4_1:4374723-4374742 None:intergenic 40.0%
TACAAAGGGGGGTTACATTA+AGG + chr4_1:4374724-4374743 None:intergenic 40.0%
GCAGAGGAACTAAGTAAAGA+AGG - chr4_1:4375281-4375300 Msa0530340:intron 40.0%
TCTATAACTGCAGTTGTGTC+TGG + chr4_1:4375329-4375348 None:intergenic 40.0%
ACATGATCCATCATCCACAT+TGG + chr4_1:4375651-4375670 None:intergenic 40.0%
TGGATCATGTCCAATTGAAG+TGG - chr4_1:4375661-4375680 Msa0530340:intron 40.0%
TCAGTGCTAACTACTAACTG+TGG + chr4_1:4375808-4375827 None:intergenic 40.0%
CCACATGACCAATTGCAAAG+AGG + chr4_1:4369112-4369131 None:intergenic 45.0%
CCTCTTTGCAATTGGTCATG+TGG - chr4_1:4369109-4369128 Msa0530340:CDS 45.0%
CATACTTAAGGTGGTCAACG+AGG - chr4_1:4369475-4369494 Msa0530340:intron 45.0%
GAACCATGACTTGAAGGTCT+CGG + chr4_1:4369913-4369932 None:intergenic 45.0%
GGCTATGTTTGAACTTGGGA+AGG - chr4_1:4370274-4370293 Msa0530340:intron 45.0%
TGATAAGTGTGTACGGCTCA+GGG - chr4_1:4370645-4370664 Msa0530340:intron 45.0%
! GTTTAAGACGGTCCTGACTA+TGG + chr4_1:4370688-4370707 None:intergenic 45.0%
CTTGGTATGAGTTGCGTCAA+CGG + chr4_1:4371120-4371139 None:intergenic 45.0%
! AGACTTAGAGAGCATGAGAG+AGG + chr4_1:4371169-4371188 None:intergenic 45.0%
ACGGTAAAGGGTAAAAGCTG+CGG + chr4_1:4371911-4371930 None:intergenic 45.0%
CTGATTCACTGGACGGTAAA+GGG + chr4_1:4371923-4371942 None:intergenic 45.0%
! ACTGATTCACTGGACGGTAA+AGG + chr4_1:4371924-4371943 None:intergenic 45.0%
!! AAGACAGTAACGGGTCTGTT+TGG + chr4_1:4372341-4372360 None:intergenic 45.0%
GCTTACATGTTGAATGCGGT+CGG - chr4_1:4372595-4372614 Msa0530340:intron 45.0%
GAGAGAAGTGGTTAACAGTG+AGG - chr4_1:4372648-4372667 Msa0530340:intron 45.0%
! TTGTGAGGCCTTGTGCAATA+AGG - chr4_1:4372851-4372870 Msa0530340:intron 45.0%
AGGTAACCCTAATGCTCCAT+AGG - chr4_1:4372871-4372890 Msa0530340:intron 45.0%
CAAAGAGATCATTCGCACGA+CGG + chr4_1:4373061-4373080 None:intergenic 45.0%
ACAAGCATTCTACATAGGGG+TGG - chr4_1:4373143-4373162 Msa0530340:intron 45.0%
!!! TTTTGAAGTAGGCCAGGCTT+AGG + chr4_1:4373201-4373220 None:intergenic 45.0%
! CCGTCATATGCTCATTTTCG+AGG - chr4_1:4373248-4373267 Msa0530340:intron 45.0%
! ATCAGGCCTTTAAAAAGGCC+AGG + chr4_1:4373279-4373298 None:intergenic 45.0%
ATAGGCTTTCAGGCTTCATC+AGG + chr4_1:4373296-4373315 None:intergenic 45.0%
GTAGGCTTACATGTGTTGTC+AGG + chr4_1:4373343-4373362 None:intergenic 45.0%
!! CTTTTTCACAAGCCTTAGCC+TGG - chr4_1:4373582-4373601 Msa0530340:intron 45.0%
GCCCAGCTCGTTTATTAACA+AGG + chr4_1:4373649-4373668 None:intergenic 45.0%
!! CCTACGGACTAGCCTATTTA+AGG + chr4_1:4373681-4373700 None:intergenic 45.0%
! CCTTAAATAGGCTAGTCCGT+AGG - chr4_1:4373678-4373697 Msa0530340:intron 45.0%
GTAGAATTAGGGGTGGGAAT+AGG + chr4_1:4373723-4373742 None:intergenic 45.0%
ACCAAGAGCTATGCTCAGAA+AGG - chr4_1:4374245-4374264 Msa0530340:CDS 45.0%
TCCTTTCTGAGCATAGCTCT+TGG + chr4_1:4374249-4374268 None:intergenic 45.0%
GCTATGCTCAGAAAGGATAG+AGG - chr4_1:4374252-4374271 Msa0530340:CDS 45.0%
!! ACAAATGGAGTGGATTGGGA+TGG - chr4_1:4374557-4374576 Msa0530340:intron 45.0%
TGGGTGGTTACATTAAGGGA+CGG - chr4_1:4374961-4374980 Msa0530340:CDS 45.0%
TGGTTACATTAAGGGACGGA+GGG - chr4_1:4374965-4374984 Msa0530340:CDS 45.0%
GTCGTGAAATGGAGATCAGA+CGG + chr4_1:4375166-4375185 None:intergenic 45.0%
TGCGAACTGAATCTTGTTCC+AGG - chr4_1:4375587-4375606 Msa0530340:intron 45.0%
GCGAACTGAATCTTGTTCCA+GGG - chr4_1:4375588-4375607 Msa0530340:intron 45.0%
TTGGCCATTGGATCGTACAA+GGG + chr4_1:4375632-4375651 None:intergenic 45.0%
ATTGGCCATTGGATCGTACA+AGG + chr4_1:4375633-4375652 None:intergenic 45.0%
!!! AATTTTTTTTTTTAACATTT+TGG + chr4_1:4373907-4373926 None:intergenic 5.0%
TGAGAAGAGAGAGAGAGTGG+TGG + chr4_1:4368890-4368909 None:intergenic 50.0%
GACAGAGAAGCAAGGTTGAG+TGG + chr4_1:4369004-4369023 None:intergenic 50.0%
GAGGTTGTGACAGAGAAGCA+AGG + chr4_1:4369012-4369031 None:intergenic 50.0%
GAGTGCACCCTCTTTGCAAT+TGG - chr4_1:4369101-4369120 Msa0530340:CDS 50.0%
GGTCAACGAGGTTCCAAATG+AGG - chr4_1:4369487-4369506 Msa0530340:intron 50.0%
TTGGGAAGGCTGCTGTATAC+TGG - chr4_1:4370288-4370307 Msa0530340:intron 50.0%
AGTAGGAGCAACACCGTTAG+TGG + chr4_1:4370318-4370337 None:intergenic 50.0%
CTGATAAGTGTGTACGGCTC+AGG - chr4_1:4370644-4370663 Msa0530340:intron 50.0%
! CATGAGAGAGGCATGGAACA+TGG + chr4_1:4371157-4371176 None:intergenic 50.0%
! TAGAGAGCATGAGAGAGGCA+TGG + chr4_1:4371164-4371183 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAAG+TGG - chr4_1:4372636-4372655 Msa0530340:intron 50.0%
GTTGAGTATATGGGGGCCTA+TGG + chr4_1:4372890-4372909 None:intergenic 50.0%
CGATTAAGAGATAGCTCGGG+TGG - chr4_1:4372922-4372941 Msa0530340:intron 50.0%
AAAAATGCTAGGCCTGAGCC+TGG - chr4_1:4373217-4373236 Msa0530340:intron 50.0%
!! CATATGACGGGTAATAGGCC+AGG + chr4_1:4373238-4373257 None:intergenic 50.0%
!! GCCTGACCTGGCCTTTTTAA+AGG - chr4_1:4373270-4373289 Msa0530340:intron 50.0%
! GCCTTTAAAAAGGCCAGGTC+AGG + chr4_1:4373274-4373293 None:intergenic 50.0%
GGCCGAGTTAGGCCTTAAAT+AGG - chr4_1:4373666-4373685 Msa0530340:intron 50.0%
GGTTCACCACCGCACATAAT+TGG + chr4_1:4374228-4374247 None:intergenic 50.0%
GGGTTACATTAAGGGACGGA+TGG + chr4_1:4374715-4374734 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG + chr4_1:4374719-4374738 None:intergenic 50.0%
GTGGTTACATTAAGGGACGG+AGG - chr4_1:4374964-4374983 Msa0530340:CDS 50.0%
! TTTGTTGTAGGGCTTGGCAG+AGG - chr4_1:4375265-4375284 Msa0530340:intron 50.0%
GTACGATCCAATGGCCAATG+TGG - chr4_1:4375634-4375653 Msa0530340:intron 50.0%
CCATCATCCACATTGGCCAT+TGG + chr4_1:4375644-4375663 None:intergenic 50.0%
CCAATGGCCAATGTGGATGA+TGG - chr4_1:4375641-4375660 Msa0530340:intron 50.0%
! TGTAGTCAGTGCTGCTGCTG+CGG - chr4_1:4369731-4369750 Msa0530340:intron 55.0%
TCGCCGAGACCTTCAAGTCA+TGG - chr4_1:4369907-4369926 Msa0530340:intron 55.0%
! TGGGGGCCTATGGAGCATTA+GGG + chr4_1:4372880-4372899 None:intergenic 55.0%
! ATGGGGGCCTATGGAGCATT+AGG + chr4_1:4372881-4372900 None:intergenic 55.0%
! CATAGGGGTGGAAATGGGCT+AGG - chr4_1:4373155-4373174 Msa0530340:intron 55.0%
GGCTTAGGCCTTACAAAGCC+CGG + chr4_1:4373186-4373205 None:intergenic 55.0%
! GGCTTTGTAAGGCCTAAGCC+TGG - chr4_1:4373186-4373205 Msa0530340:intron 55.0%
!! CTCATTTTCGAGGCCTGACC+TGG - chr4_1:4373258-4373277 Msa0530340:intron 55.0%
AGCTTAATAGGTCGGCCCGA+TGG - chr4_1:4373549-4373568 Msa0530340:intron 55.0%
GCTTAATAGGTCGGCCCGAT+GGG - chr4_1:4373550-4373569 Msa0530340:intron 55.0%
TAAACGAGCTGGGCCGAGTT+AGG - chr4_1:4373655-4373674 Msa0530340:intron 55.0%
ATTAGGGGTGGGAATAGGCC+AGG + chr4_1:4373718-4373737 None:intergenic 55.0%
CTCGCCCTTGTACGATCCAA+TGG - chr4_1:4375625-4375644 Msa0530340:intron 55.0%
! GGAGCAAGTTGAGCTGCAGC+TGG + chr4_1:4370458-4370477 None:intergenic 60.0%
!! TGCGGTCGGTGTCGACAATG+AGG - chr4_1:4372609-4372628 Msa0530340:intron 60.0%
ACGGGTAATAGGCCAGGCTC+AGG + chr4_1:4373232-4373251 None:intergenic 60.0%
! GTCGGCCCGATGGGCTTAAT+AGG - chr4_1:4373559-4373578 Msa0530340:intron 60.0%
GAGCTAGGATCGATGCACCC+TGG + chr4_1:4375608-4375627 None:intergenic 60.0%
GGATCGTACAAGGGCGAGCT+AGG + chr4_1:4375623-4375642 None:intergenic 60.0%
!! GGGTGGAAATGGGCTAGGCC+AGG - chr4_1:4373160-4373179 Msa0530340:intron 65.0%
!! GGAAATGGGCTAGGCCAGGC+CGG - chr4_1:4373164-4373183 Msa0530340:intron 65.0%
!! GAAATGGGCTAGGCCAGGCC+GGG - chr4_1:4373165-4373184 Msa0530340:intron 65.0%
! AGGCCAGGCCGGGCTTTGTA+AGG - chr4_1:4373175-4373194 Msa0530340:intron 65.0%
AGGCCTTACAAAGCCCGGCC+TGG + chr4_1:4373181-4373200 None:intergenic 65.0%
GCTAGTCCGTAGGCCCCTGT+CGG - chr4_1:4373688-4373707 Msa0530340:intron 65.0%
ATAGGCCAGGCCGTCCGACA+GGG + chr4_1:4373705-4373724 None:intergenic 65.0%
AATAGGCCAGGCCGTCCGAC+AGG + chr4_1:4373706-4373725 None:intergenic 65.0%
GTCCGTAGGCCCCTGTCGGA+CGG - chr4_1:4373692-4373711 Msa0530340:intron 70.0%
TAGGCCAGGCCGTCCGACAG+GGG + chr4_1:4373704-4373723 None:intergenic 70.0%
GGCCGTCCGACAGGGGCCTA+CGG + chr4_1:4373697-4373716 None:intergenic 75.0%
TAGGCCCCTGTCGGACGGCC+TGG - chr4_1:4373697-4373716 Msa0530340:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 4368809 4375925 4368809 ID=Msa0530340;Name=Msa0530340
chr4_1 mRNA 4368809 4375925 4368809 ID=Msa0530340-mRNA-1;Parent=Msa0530340;Name=Msa0530340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=158|0.85|0.87|1|0.71|0.87|8|222|276
chr4_1 exon 4368809 4369156 4368809 ID=Msa0530340-mRNA-1:exon:1340;Parent=Msa0530340-mRNA-1
chr4_1 exon 4369349 4369459 4369349 ID=Msa0530340-mRNA-1:exon:1339;Parent=Msa0530340-mRNA-1
chr4_1 exon 4370088 4370200 4370088 ID=Msa0530340-mRNA-1:exon:1338;Parent=Msa0530340-mRNA-1
chr4_1 exon 4370425 4370523 4370425 ID=Msa0530340-mRNA-1:exon:1337;Parent=Msa0530340-mRNA-1
chr4_1 exon 4374228 4374306 4374228 ID=Msa0530340-mRNA-1:exon:1336;Parent=Msa0530340-mRNA-1
chr4_1 exon 4374394 4374478 4374394 ID=Msa0530340-mRNA-1:exon:1335;Parent=Msa0530340-mRNA-1
chr4_1 exon 4374950 4375073 4374950 ID=Msa0530340-mRNA-1:exon:1334;Parent=Msa0530340-mRNA-1
chr4_1 exon 4375674 4375925 4375674 ID=Msa0530340-mRNA-1:exon:1333;Parent=Msa0530340-mRNA-1
chr4_1 five_prime_UTR 4375768 4375925 4375768 ID=Msa0530340-mRNA-1:five_prime_utr;Parent=Msa0530340-mRNA-1
chr4_1 CDS 4375674 4375767 4375674 ID=Msa0530340-mRNA-1:cds;Parent=Msa0530340-mRNA-1
chr4_1 CDS 4374950 4375073 4374950 ID=Msa0530340-mRNA-1:cds;Parent=Msa0530340-mRNA-1
chr4_1 CDS 4374394 4374478 4374394 ID=Msa0530340-mRNA-1:cds;Parent=Msa0530340-mRNA-1
chr4_1 CDS 4374228 4374306 4374228 ID=Msa0530340-mRNA-1:cds;Parent=Msa0530340-mRNA-1
chr4_1 CDS 4370425 4370523 4370425 ID=Msa0530340-mRNA-1:cds;Parent=Msa0530340-mRNA-1
chr4_1 CDS 4370088 4370200 4370088 ID=Msa0530340-mRNA-1:cds;Parent=Msa0530340-mRNA-1
chr4_1 CDS 4369349 4369459 4369349 ID=Msa0530340-mRNA-1:cds;Parent=Msa0530340-mRNA-1
chr4_1 CDS 4369031 4369156 4369031 ID=Msa0530340-mRNA-1:cds;Parent=Msa0530340-mRNA-1
chr4_1 three_prime_UTR 4368809 4369030 4368809 ID=Msa0530340-mRNA-1:three_prime_utr;Parent=Msa0530340-mRNA-1
Gene Sequence

>Msa0530340

ATGGCTGCAACTAATGCTTCAATCTTTGCTTCTTCCACTCAACCTTGCTTCTCTGTCACAACCTCTCGAAGTCATAGCATAACAAACACGTTTGGAAGTAATTTTCTCAATGTTTCACTACCAAGATGTTACCCTTTGAAGGAAAGACATATGAAAGTTAAGCATGTAGTCAGTGCTGCTGCTGCGGTTGCAACAAGTCCTACTGAAGAAATTCAAGAGTACAAGCTTCCTTCATGGGCTATGTTTGAACTTGGGAAGGCTGCTGTATACTGGAAAACCACTAACGGTGTTGCTCCTACTTCAGGTGAAAAGCTTAAACTGTTCTATAATCCAGCTGCAGCTCAACTTGCTCCTAGTGAAGAATTTGGAATTGCTTTTAATGGTGGTTTTAATCAACCAATTATGTGCGGTGGTGAACCAAGAGCTATGCTCAGAAAGGATAGAGGCAAAGCTGATTCCCCTATATACAGCATTCAAATATCTTTAAACTTGATTTTCTCATTTACAAATGGAGTGGATTGGGATGGTCCATATAGACTGCAATTTCAAGTTCCTAAACCTTTACAGAACAAGCCAATTGAATTCTTTAACGAGGGCTTGGCAGAGGAACTAAGTAAAGAAGGAGCATGTGAACAAGCAATATTTCCAGACACAACTGCAGTTATAGAAAAATGTGCTATGATTGGTAATTTATCAAAAGAAGGGGGTGATCGCTGCGAACTGAATCTTGTTCCAGGGTGCATCGATCCTAGCTCGCCCTTGTACGATCCAATGGCCAATGTGGATGATGGATCATGTCCAATTGAAGTGGATTCTGATTCTGATGAATAA

Protein sequence

>Msa0530340

MAATNASIFASSTQPCFSVTTSRSHSITNTFGSNFLNVSLPRCYPLKERHMKVKHVVSAAAAVATSPTEEIQEYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAAQLAPSEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQISLNLIFSFTNGVDWDGPYRLQFQVPKPLQNKPIEFFNEGLAEELSKEGACEQAIFPDTTAVIEKCAMIGNLSKEGGDRCELNLVPGCIDPSSPLYDPMANVDDGSCPIEVDSDSDE*