Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500270 | KEH35768.1 | 91.532 | 248 | 13 | 1 | 1 | 240 | 77 | 324 | 7.40e-153 | 438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500270 | sp|P25010|CCNAL_DAUCA | 58.103 | 253 | 92 | 3 | 1 | 240 | 87 | 338 | 3.72e-95 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500270 | A0A072V341 | 91.532 | 248 | 13 | 1 | 1 | 240 | 77 | 324 | 3.54e-153 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067060 | Msa0500270 | 0.806678 | 7.319103e-50 | -8.615850e-47 |
| Msa0112670 | Msa0500270 | 0.812786 | 3.558197e-51 | -8.615850e-47 |
| Msa0115550 | Msa0500270 | 0.826630 | 2.441200e-54 | -8.615850e-47 |
| Msa0232760 | Msa0500270 | 0.822190 | 2.704329e-53 | -8.615850e-47 |
| Msa0380770 | Msa0500270 | 0.862380 | 5.279635e-64 | -8.615850e-47 |
| Msa0383000 | Msa0500270 | 0.804872 | 1.753168e-49 | -8.615850e-47 |
| Msa0404800 | Msa0500270 | 0.870696 | 1.200677e-66 | -8.615850e-47 |
| Msa0430570 | Msa0500270 | 0.827792 | 1.286527e-54 | -8.615850e-47 |
| Msa0433150 | Msa0500270 | 0.805103 | 1.569107e-49 | -8.615850e-47 |
| Msa0500270 | Msa0524520 | 0.805466 | 1.317028e-49 | -8.615850e-47 |
| Msa0500270 | Msa0563740 | 0.810006 | 1.428682e-50 | -8.615850e-47 |
| Msa0500270 | Msa0563980 | 0.810791 | 9.670595e-51 | -8.615850e-47 |
| Msa0500270 | Msa0580200 | 0.800130 | 1.665378e-48 | -8.615850e-47 |
| Msa0500270 | Msa0888790 | 0.802213 | 6.241967e-49 | -8.615850e-47 |
| Msa0500270 | Msa0915520 | 0.811066 | 8.431041e-51 | -8.615850e-47 |
| Msa0500270 | Msa1078970 | 0.800460 | 1.426594e-48 | -8.615850e-47 |
| Msa0500270 | Msa1254540 | 0.800693 | 1.278795e-48 | -8.615850e-47 |
| Msa0500270 | Msa1261050 | 0.801913 | 7.194143e-49 | -8.615850e-47 |
| Msa0500270 | Msa1300460 | 0.805243 | 1.466545e-49 | -8.615850e-47 |
| Msa0500270 | Msa1338210 | 0.804666 | 1.935810e-49 | -8.615850e-47 |
| Msa0500270 | Msa1450190 | 0.800983 | 1.115546e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500270 | MtrunA17_Chr3g0134441 | 88.142 | 253 | 17 | 2 | 1 | 240 | 77 | 329 | 3.33e-151 | 424 |
| Msa0500270 | MtrunA17_Chr3g0134431 | 69.820 | 222 | 59 | 1 | 1 | 222 | 22 | 235 | 6.22e-109 | 314 |
| Msa0500270 | MtrunA17_Chr3g0134401 | 63.386 | 254 | 78 | 3 | 1 | 240 | 85 | 337 | 3.01e-106 | 310 |
| Msa0500270 | MtrunA17_Chr1g0152871 | 58.268 | 254 | 92 | 2 | 1 | 240 | 104 | 357 | 2.72e-104 | 306 |
| Msa0500270 | MtrunA17_Chr3g0134411 | 60.236 | 254 | 86 | 3 | 1 | 240 | 104 | 356 | 1.62e-101 | 299 |
| Msa0500270 | MtrunA17_Chr3g0134421 | 60.630 | 254 | 85 | 3 | 1 | 240 | 97 | 349 | 4.17e-101 | 297 |
| Msa0500270 | MtrunA17_Chr3g0125051 | 51.190 | 252 | 110 | 2 | 2 | 240 | 252 | 503 | 8.25e-82 | 253 |
| Msa0500270 | MtrunA17_Chr3g0125041 | 48.235 | 255 | 109 | 5 | 5 | 240 | 258 | 508 | 2.32e-75 | 236 |
| Msa0500270 | MtrunA17_Chr3g0138431 | 51.020 | 245 | 107 | 3 | 2 | 233 | 225 | 469 | 7.05e-75 | 234 |
| Msa0500270 | MtrunA17_Chr1g0148681 | 50.407 | 246 | 107 | 3 | 2 | 233 | 168 | 412 | 3.52e-73 | 228 |
| Msa0500270 | MtrunA17_Chr2g0332181 | 45.635 | 252 | 123 | 3 | 2 | 240 | 179 | 429 | 6.90e-67 | 213 |
| Msa0500270 | MtrunA17_Chr2g0332171 | 46.341 | 246 | 117 | 4 | 2 | 232 | 233 | 478 | 2.58e-65 | 210 |
| Msa0500270 | MtrunA17_Chr8g0370671 | 35.160 | 219 | 135 | 1 | 16 | 227 | 201 | 419 | 2.06e-41 | 146 |
| Msa0500270 | MtrunA17_Chr5g0441371 | 39.450 | 218 | 122 | 4 | 10 | 218 | 184 | 400 | 2.69e-41 | 145 |
| Msa0500270 | MtrunA17_Chr5g0406741 | 35.616 | 219 | 134 | 1 | 16 | 227 | 197 | 415 | 2.45e-39 | 140 |
| Msa0500270 | MtrunA17_Chr7g0255771 | 33.468 | 248 | 150 | 5 | 1 | 235 | 210 | 455 | 3.23e-39 | 141 |
| Msa0500270 | MtrunA17_Chr8g0357001 | 37.356 | 174 | 108 | 1 | 2 | 175 | 498 | 670 | 2.36e-29 | 115 |
| Msa0500270 | MtrunA17_Chr3g0103471 | 31.282 | 195 | 120 | 4 | 19 | 199 | 46 | 240 | 3.46e-18 | 81.3 |
| Msa0500270 | MtrunA17_Chr3g0102861 | 30.769 | 208 | 122 | 5 | 19 | 204 | 46 | 253 | 4.27e-18 | 81.3 |
| Msa0500270 | MtrunA17_Chr3g0102851 | 30.516 | 213 | 133 | 5 | 19 | 216 | 56 | 268 | 4.97e-18 | 81.3 |
| Msa0500270 | MtrunA17_Chr3g0102621 | 29.032 | 217 | 137 | 5 | 19 | 221 | 52 | 265 | 5.94e-17 | 78.2 |
| Msa0500270 | MtrunA17_Chr5g0418901 | 36.709 | 79 | 50 | 0 | 45 | 123 | 7 | 85 | 7.47e-14 | 65.5 |
| Msa0500270 | MtrunA17_Chr3g0102631 | 31.429 | 175 | 102 | 5 | 43 | 201 | 3 | 175 | 1.56e-12 | 64.7 |
| Msa0500270 | MtrunA17_Chr3g0102651 | 31.429 | 175 | 102 | 5 | 43 | 201 | 3 | 175 | 1.56e-12 | 64.7 |
| Msa0500270 | MtrunA17_Chr3g0102661 | 31.429 | 175 | 102 | 5 | 43 | 201 | 3 | 175 | 1.56e-12 | 64.7 |
| Msa0500270 | MtrunA17_Chr3g0102671 | 31.429 | 175 | 102 | 5 | 43 | 201 | 3 | 175 | 1.56e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500270 | AT5G43080.2 | 55.645 | 248 | 102 | 1 | 1 | 240 | 98 | 345 | 7.16e-97 | 287 |
| Msa0500270 | AT5G43080.1 | 55.906 | 254 | 97 | 3 | 1 | 240 | 98 | 350 | 6.64e-96 | 285 |
| Msa0500270 | AT1G47230.1 | 56.175 | 251 | 95 | 3 | 4 | 240 | 111 | 360 | 1.64e-95 | 284 |
| Msa0500270 | AT1G47230.2 | 55.952 | 252 | 95 | 4 | 4 | 240 | 111 | 361 | 1.22e-93 | 280 |
| Msa0500270 | AT1G47210.2 | 51.807 | 249 | 107 | 2 | 1 | 236 | 115 | 363 | 7.97e-89 | 267 |
| Msa0500270 | AT1G47220.1 | 53.036 | 247 | 101 | 3 | 4 | 236 | 72 | 317 | 2.61e-82 | 249 |
| Msa0500270 | AT1G44110.1 | 50.000 | 252 | 113 | 2 | 2 | 240 | 206 | 457 | 5.24e-76 | 237 |
| Msa0500270 | AT5G11300.1 | 52.209 | 249 | 106 | 3 | 2 | 237 | 184 | 432 | 7.44e-76 | 236 |
| Msa0500270 | AT5G25380.3 | 50.806 | 248 | 107 | 3 | 2 | 235 | 185 | 431 | 3.00e-72 | 227 |
| Msa0500270 | AT5G25380.1 | 50.806 | 248 | 107 | 3 | 2 | 235 | 185 | 431 | 3.00e-72 | 227 |
| Msa0500270 | AT5G25380.4 | 50.806 | 248 | 107 | 3 | 2 | 235 | 191 | 437 | 4.53e-72 | 226 |
| Msa0500270 | AT1G15570.1 | 48.361 | 244 | 113 | 2 | 2 | 232 | 200 | 443 | 8.97e-71 | 223 |
| Msa0500270 | AT1G80370.1 | 48.810 | 252 | 115 | 4 | 2 | 240 | 209 | 459 | 4.38e-70 | 222 |
| Msa0500270 | AT5G25380.2 | 50.638 | 235 | 101 | 3 | 2 | 222 | 185 | 418 | 3.00e-67 | 213 |
| Msa0500270 | AT1G77390.1 | 45.238 | 252 | 125 | 2 | 2 | 240 | 190 | 441 | 2.76e-66 | 212 |
| Msa0500270 | AT5G11300.2 | 57.222 | 180 | 72 | 2 | 2 | 176 | 184 | 363 | 7.41e-61 | 197 |
| Msa0500270 | AT3G11520.1 | 40.179 | 224 | 126 | 2 | 16 | 232 | 183 | 405 | 7.86e-43 | 150 |
| Msa0500270 | AT4G37490.1 | 37.449 | 243 | 137 | 6 | 1 | 230 | 176 | 416 | 8.46e-41 | 145 |
| Msa0500270 | AT5G06150.1 | 38.034 | 234 | 136 | 3 | 1 | 227 | 193 | 424 | 9.63e-41 | 145 |
| Msa0500270 | AT3G11520.2 | 43.229 | 192 | 102 | 1 | 16 | 200 | 183 | 374 | 1.17e-40 | 144 |
| Msa0500270 | AT1G20610.1 | 35.160 | 219 | 135 | 1 | 16 | 227 | 202 | 420 | 7.90e-39 | 139 |
| Msa0500270 | AT2G26760.1 | 40.343 | 233 | 129 | 4 | 8 | 231 | 147 | 378 | 1.29e-38 | 138 |
| Msa0500270 | AT1G76310.1 | 35.965 | 228 | 137 | 3 | 10 | 229 | 197 | 423 | 1.32e-38 | 139 |
| Msa0500270 | AT4G35620.1 | 38.197 | 233 | 136 | 2 | 10 | 235 | 192 | 423 | 4.06e-37 | 135 |
| Msa0500270 | AT2G17620.1 | 38.136 | 236 | 138 | 2 | 10 | 238 | 191 | 425 | 1.03e-36 | 134 |
| Msa0500270 | AT4G35620.2 | 43.503 | 177 | 99 | 1 | 10 | 186 | 192 | 367 | 1.01e-33 | 125 |
| Msa0500270 | AT1G16330.1 | 33.654 | 208 | 131 | 1 | 18 | 218 | 422 | 629 | 1.06e-33 | 128 |
| Msa0500270 | AT1G76310.2 | 38.983 | 177 | 106 | 2 | 10 | 185 | 197 | 372 | 1.32e-33 | 125 |
| Msa0500270 | AT1G76310.3 | 32.031 | 256 | 137 | 4 | 10 | 229 | 197 | 451 | 1.02e-32 | 124 |
| Msa0500270 | AT1G47210.1 | 60.256 | 78 | 31 | 0 | 1 | 78 | 115 | 192 | 1.13e-28 | 107 |
| Msa0500270 | AT5G06150.2 | 45.312 | 128 | 68 | 2 | 1 | 128 | 193 | 318 | 3.79e-27 | 107 |
| Msa0500270 | AT1G76310.4 | 45.082 | 122 | 65 | 2 | 10 | 130 | 197 | 317 | 1.64e-25 | 102 |
| Msa0500270 | AT1G20590.1 | 35.526 | 152 | 91 | 1 | 52 | 196 | 66 | 217 | 4.49e-23 | 94.7 |
| Msa0500270 | AT1G14750.4 | 32.258 | 186 | 115 | 5 | 21 | 196 | 216 | 400 | 1.71e-15 | 75.5 |
| Msa0500270 | AT1G14750.2 | 31.183 | 186 | 118 | 4 | 21 | 196 | 216 | 401 | 2.09e-15 | 75.1 |
| Msa0500270 | AT1G14750.3 | 30.688 | 189 | 121 | 4 | 21 | 199 | 384 | 572 | 3.95e-15 | 74.7 |
| Msa0500270 | AT1G14750.1 | 31.217 | 189 | 120 | 4 | 21 | 199 | 384 | 572 | 8.26e-15 | 73.6 |
| Msa0500270 | AT1G34460.9 | 35.156 | 128 | 61 | 3 | 1 | 128 | 269 | 374 | 7.69e-12 | 64.7 |
| Msa0500270 | AT1G34460.5 | 35.156 | 128 | 61 | 3 | 1 | 128 | 283 | 388 | 7.85e-12 | 64.7 |
| Msa0500270 | AT1G34460.7 | 35.156 | 128 | 61 | 3 | 1 | 128 | 283 | 388 | 8.44e-12 | 64.7 |
| Msa0500270 | AT1G34460.6 | 35.156 | 128 | 61 | 3 | 1 | 128 | 283 | 388 | 8.48e-12 | 64.7 |
| Msa0500270 | AT1G34460.3 | 35.156 | 128 | 61 | 3 | 1 | 128 | 283 | 388 | 8.48e-12 | 64.7 |
| Msa0500270 | AT1G34460.8 | 35.156 | 128 | 61 | 3 | 1 | 128 | 283 | 388 | 8.48e-12 | 64.7 |
| Msa0500270 | AT1G34460.1 | 35.156 | 128 | 61 | 3 | 1 | 128 | 283 | 388 | 8.48e-12 | 64.7 |
| Msa0500270 | AT1G34460.2 | 35.156 | 128 | 61 | 3 | 1 | 128 | 280 | 385 | 9.16e-12 | 64.7 |
| Msa0500270 | AT1G34460.4 | 35.156 | 128 | 61 | 3 | 1 | 128 | 280 | 385 | 9.16e-12 | 64.7 |
Find 45 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCTGAGCTAAGTTTAT+TGG | 0.148419 | 3_4:+40564392 | Msa0500270:CDS |
| TGTGAGATTCTTGCCTTCTT+TGG | 0.236242 | 3_4:+40564425 | Msa0500270:CDS |
| TCGCTGTTTCTTACATAGAT+AGG | 0.328623 | 3_4:+40563454 | Msa0500270:CDS |
| TGAGAGGAATATTGATTGAT+TGG | 0.331773 | 3_4:+40563382 | Msa0500270:CDS |
| CAAGACCCTAGATAATGATA+TGG | 0.336031 | 3_4:+40564058 | Msa0500270:CDS |
| TGAAGCTTGACCCTATTGAT+AGG | 0.352654 | 3_4:-40563492 | None:intergenic |
| AAATAATTAATAAACAGATT+TGG | 0.374757 | 3_4:-40564120 | None:intergenic |
| TATACCCAGAGTATTCTTGC+AGG | 0.389030 | 3_4:-40564634 | None:intergenic |
| ACGCATTCCTTCAACTCAAC+TGG | 0.389273 | 3_4:-40564659 | None:intergenic |
| GACTGCCCATATCATTATCT+AGG | 0.425727 | 3_4:-40564064 | None:intergenic |
| TAGGGTCAAGCTTCAATTGT+TGG | 0.434090 | 3_4:+40563500 | Msa0500270:CDS |
| GAGATTCTTGCCTTCTTTGG+TGG | 0.445209 | 3_4:+40564428 | Msa0500270:CDS |
| ATCTCCATGTAATCCTTCAT+TGG | 0.446797 | 3_4:-40563333 | None:intergenic |
| AGGGTCAAGCTTCAATTGTT+GGG | 0.475156 | 3_4:+40563501 | Msa0500270:CDS |
| GTATAAACCAGTTGAGTTGA+AGG | 0.485366 | 3_4:+40564652 | Msa0500270:CDS |
| ATCGACGCAGCCACCAAAGA+AGG | 0.504235 | 3_4:-40564438 | None:intergenic |
| AAAGCATAATTCTTCGACAT+GGG | 0.505661 | 3_4:-40563669 | None:intergenic |
| AACAGATCACTTGGTAAATG+AGG | 0.505822 | 3_4:-40564866 | None:intergenic |
| AAGGGTCATTTGAAGCTACT+CGG | 0.518059 | 3_4:+40564717 | Msa0500270:CDS |
| TCAGCCCTGCAAGAATACTC+TGG | 0.519125 | 3_4:+40564629 | Msa0500270:CDS |
| CATAATTCTTCGACATGGGG+TGG | 0.521855 | 3_4:-40563665 | None:intergenic |
| GGCTTACGATGCAATGTACA+TGG | 0.535999 | 3_4:-40563532 | None:intergenic |
| GACAAAGAGAAGACCAATGA+AGG | 0.540350 | 3_4:+40563320 | Msa0500270:CDS |
| GAAGCTTGACCCTATTGATA+GGG | 0.540822 | 3_4:-40563491 | None:intergenic |
| AAGACCCTAGATAATGATAT+GGG | 0.542783 | 3_4:+40564059 | Msa0500270:CDS |
| AAGACCAATGAAGGATTACA+TGG | 0.547107 | 3_4:+40563329 | Msa0500270:CDS |
| CTTGGTAAATGAGGAGGCGA+AGG | 0.552246 | 3_4:-40564857 | None:intergenic |
| CTGTATATGTCAAGACGGGA+AGG | 0.561150 | 3_4:+40564698 | Msa0500270:CDS |
| TCAAATTAAAACAGATCACT+TGG | 0.561830 | 3_4:-40564875 | None:intergenic |
| CAGCCCTGCAAGAATACTCT+GGG | 0.579144 | 3_4:+40564630 | Msa0500270:CDS |
| ATAATTCTTCGACATGGGGT+GGG | 0.585139 | 3_4:-40563664 | None:intergenic |
| AGGGTCATTTGAAGCTACTC+GGG | 0.585830 | 3_4:+40564718 | Msa0500270:CDS |
| ATGATCTGTATATGTCAAGA+CGG | 0.591093 | 3_4:+40564693 | Msa0500270:CDS |
| TGATCTGTATATGTCAAGAC+GGG | 0.596030 | 3_4:+40564694 | Msa0500270:CDS |
| ATACCCAGAGTATTCTTGCA+GGG | 0.596799 | 3_4:-40564633 | None:intergenic |
| ACTGCCCATATCATTATCTA+GGG | 0.603439 | 3_4:-40564063 | None:intergenic |
| GGAGAAATACAAGCAGTACA+AGG | 0.603442 | 3_4:+40564739 | Msa0500270:CDS |
| TAAAGCATAATTCTTCGACA+TGG | 0.621082 | 3_4:-40563670 | None:intergenic |
| AAGCATAATTCTTCGACATG+GGG | 0.631386 | 3_4:-40563668 | None:intergenic |
| AGATCACTTGGTAAATGAGG+AGG | 0.642418 | 3_4:-40564863 | None:intergenic |
| TTGGTAAATGAGGAGGCGAA+GGG | 0.642726 | 3_4:-40564856 | None:intergenic |
| TGTATATGTCAAGACGGGAA+GGG | 0.652672 | 3_4:+40564699 | Msa0500270:CDS |
| GTAAATGAGGAGGCGAAGGG+AGG | 0.656266 | 3_4:-40564853 | None:intergenic |
| ATTGTAACAGTTCAAATACG+TGG | 0.709700 | 3_4:+40564826 | Msa0500270:intron |
| TAATACATACAACAGAGACG+AGG | 0.764399 | 3_4:+40563700 | Msa0500270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAATAAACAGATT+TGG | - | chr3_4:40564123-40564142 | None:intergenic | 10.0% |
| !! | AAATAATTAATAAACAGATT+TGG | - | chr3_4:40564123-40564142 | None:intergenic | 10.0% |
| !! | ATTATTTGCAAAATTCAAAT+CGG | - | chr3_4:40563566-40563585 | None:intergenic | 15.0% |
| !!! | CTTATTTTTTCGATTATAAA+AGG | + | chr3_4:40563624-40563643 | Msa0500270:intron | 15.0% |
| !!! | AACAAATTTAAATCTTCTTT+TGG | - | chr3_4:40563954-40563973 | None:intergenic | 15.0% |
| !! | ATTATTTGCAAAATTCAAAT+CGG | - | chr3_4:40563566-40563585 | None:intergenic | 15.0% |
| !!! | CTTATTTTTTCGATTATAAA+AGG | + | chr3_4:40563624-40563643 | Msa0500270:intron | 15.0% |
| !!! | AACAAATTTAAATCTTCTTT+TGG | - | chr3_4:40563954-40563973 | None:intergenic | 15.0% |
| !!! | TTTCAGATCATAAAAAGTAT+CGG | - | chr3_4:40563743-40563762 | None:intergenic | 20.0% |
| !!! | TATAATTGAGATCCTTTTTA+GGG | - | chr3_4:40563885-40563904 | None:intergenic | 20.0% |
| !!! | ATATAATTGAGATCCTTTTT+AGG | - | chr3_4:40563886-40563905 | None:intergenic | 20.0% |
| !! | GTATTTGATCATATAGTTAA+TGG | + | chr3_4:40564511-40564530 | Msa0500270:intron | 20.0% |
| !! | AATTACCAAATTAACATAGA+TGG | + | chr3_4:40564559-40564578 | Msa0500270:intron | 20.0% |
| !!! | TTTCAGATCATAAAAAGTAT+CGG | - | chr3_4:40563743-40563762 | None:intergenic | 20.0% |
| !!! | TATAATTGAGATCCTTTTTA+GGG | - | chr3_4:40563885-40563904 | None:intergenic | 20.0% |
| !!! | ATATAATTGAGATCCTTTTT+AGG | - | chr3_4:40563886-40563905 | None:intergenic | 20.0% |
| !! | GTATTTGATCATATAGTTAA+TGG | + | chr3_4:40564511-40564530 | Msa0500270:intron | 20.0% |
| !! | AATTACCAAATTAACATAGA+TGG | + | chr3_4:40564559-40564578 | Msa0500270:intron | 20.0% |
| !! | ATCAATATTCCTCTCATTTT+TGG | - | chr3_4:40563378-40563397 | None:intergenic | 25.0% |
| ! | TATTGATAGGGTAAAAAGAT+AGG | - | chr3_4:40563482-40563501 | None:intergenic | 25.0% |
| !! | TATCTTTTTACCCTATCAAT+AGG | + | chr3_4:40563481-40563500 | Msa0500270:CDS | 25.0% |
| !! | ATCTTTTTACCCTATCAATA+GGG | + | chr3_4:40563482-40563501 | Msa0500270:CDS | 25.0% |
| ! | TAGTGAAATTATCAACATAG+TGG | + | chr3_4:40563763-40563782 | Msa0500270:intron | 25.0% |
| ! | AGTGAAATTATCAACATAGT+GGG | + | chr3_4:40563764-40563783 | Msa0500270:intron | 25.0% |
| ! | GACATAAGTGTTATATGTTT+GGG | + | chr3_4:40563786-40563805 | Msa0500270:intron | 25.0% |
| !! | ATAATTGAGATCCTTTTTAG+GGG | - | chr3_4:40563884-40563903 | None:intergenic | 25.0% |
| !! | AATCTTCTTTTGGTAAACTA+AGG | - | chr3_4:40563944-40563963 | None:intergenic | 25.0% |
| ! | AAACAAGAGAAGCAAAATAA+GGG | - | chr3_4:40563996-40564015 | None:intergenic | 25.0% |
| ! | TAAACAAGAGAAGCAAAATA+AGG | - | chr3_4:40563997-40564016 | None:intergenic | 25.0% |
| ! | TTGTTTATTGCTATCAATAC+AGG | + | chr3_4:40564010-40564029 | Msa0500270:intron | 25.0% |
| ! | CTTAAAAAAGTCTTAACAGT+GGG | - | chr3_4:40564089-40564108 | None:intergenic | 25.0% |
| ! | TAAGAAGAAAAATGTGAGTT+AGG | + | chr3_4:40564239-40564258 | Msa0500270:intron | 25.0% |
| !! | TTATTTTCCTTCTTTCTTTC+AGG | + | chr3_4:40564335-40564354 | Msa0500270:intron | 25.0% |
| ! | ATCAACCATCTATGTTAATT+TGG | - | chr3_4:40564567-40564586 | None:intergenic | 25.0% |
| ! | AAATTAACATAGATGGTTGA+TGG | + | chr3_4:40564566-40564585 | Msa0500270:intron | 25.0% |
| !!! | ACATTCCTTAGACTTTATTT+TGG | + | chr3_4:40564777-40564796 | Msa0500270:intron | 25.0% |
| ! | AATAGCCAAAATAAAGTCTA+AGG | - | chr3_4:40564785-40564804 | None:intergenic | 25.0% |
| !! | ATCAATATTCCTCTCATTTT+TGG | - | chr3_4:40563378-40563397 | None:intergenic | 25.0% |
| ! | TATTGATAGGGTAAAAAGAT+AGG | - | chr3_4:40563482-40563501 | None:intergenic | 25.0% |
| !! | TATCTTTTTACCCTATCAAT+AGG | + | chr3_4:40563481-40563500 | Msa0500270:CDS | 25.0% |
| !! | ATCTTTTTACCCTATCAATA+GGG | + | chr3_4:40563482-40563501 | Msa0500270:CDS | 25.0% |
| ! | TAGTGAAATTATCAACATAG+TGG | + | chr3_4:40563763-40563782 | Msa0500270:intron | 25.0% |
| ! | AGTGAAATTATCAACATAGT+GGG | + | chr3_4:40563764-40563783 | Msa0500270:intron | 25.0% |
| ! | GACATAAGTGTTATATGTTT+GGG | + | chr3_4:40563786-40563805 | Msa0500270:intron | 25.0% |
| !! | ATAATTGAGATCCTTTTTAG+GGG | - | chr3_4:40563884-40563903 | None:intergenic | 25.0% |
| !! | AATCTTCTTTTGGTAAACTA+AGG | - | chr3_4:40563944-40563963 | None:intergenic | 25.0% |
| ! | AAACAAGAGAAGCAAAATAA+GGG | - | chr3_4:40563996-40564015 | None:intergenic | 25.0% |
| ! | TAAACAAGAGAAGCAAAATA+AGG | - | chr3_4:40563997-40564016 | None:intergenic | 25.0% |
| ! | TTGTTTATTGCTATCAATAC+AGG | + | chr3_4:40564010-40564029 | Msa0500270:intron | 25.0% |
| ! | CTTAAAAAAGTCTTAACAGT+GGG | - | chr3_4:40564089-40564108 | None:intergenic | 25.0% |
| ! | TAAGAAGAAAAATGTGAGTT+AGG | + | chr3_4:40564239-40564258 | Msa0500270:intron | 25.0% |
| !! | TTATTTTCCTTCTTTCTTTC+AGG | + | chr3_4:40564335-40564354 | Msa0500270:intron | 25.0% |
| ! | ATCAACCATCTATGTTAATT+TGG | - | chr3_4:40564567-40564586 | None:intergenic | 25.0% |
| ! | AAATTAACATAGATGGTTGA+TGG | + | chr3_4:40564566-40564585 | Msa0500270:intron | 25.0% |
| !!! | ACATTCCTTAGACTTTATTT+TGG | + | chr3_4:40564777-40564796 | Msa0500270:intron | 25.0% |
| ! | AATAGCCAAAATAAAGTCTA+AGG | - | chr3_4:40564785-40564804 | None:intergenic | 25.0% |
| ! | TGAGAGGAATATTGATTGAT+TGG | + | chr3_4:40563382-40563401 | Msa0500270:CDS | 30.0% |
| AAATTCAAATCGGACATAGA+AGG | - | chr3_4:40563556-40563575 | None:intergenic | 30.0% | |
| AAAGCATAATTCTTCGACAT+GGG | - | chr3_4:40563672-40563691 | None:intergenic | 30.0% | |
| TAAAGCATAATTCTTCGACA+TGG | - | chr3_4:40563673-40563692 | None:intergenic | 30.0% | |
| !! | GATCATAAAAAGTATCGGAA+TGG | - | chr3_4:40563738-40563757 | None:intergenic | 30.0% |
| GGACATAAGTGTTATATGTT+TGG | + | chr3_4:40563785-40563804 | Msa0500270:intron | 30.0% | |
| TCTCAATTATATCGAGAGAT+TGG | + | chr3_4:40563894-40563913 | Msa0500270:intron | 30.0% | |
| !!! | ATCAATACAGGTTTTAGAGA+TGG | + | chr3_4:40564022-40564041 | Msa0500270:intron | 30.0% |
| AAGACCCTAGATAATGATAT+GGG | + | chr3_4:40564059-40564078 | Msa0500270:CDS | 30.0% | |
| CCTTAAAAAAGTCTTAACAG+TGG | - | chr3_4:40564090-40564109 | None:intergenic | 30.0% | |
| !!! | CCACTGTTAAGACTTTTTTA+AGG | + | chr3_4:40564087-40564106 | Msa0500270:CDS | 30.0% |
| TATTGTAGTTTCTGTGATAC+AGG | + | chr3_4:40564196-40564215 | Msa0500270:intron | 30.0% | |
| TTCATTGTCTATCTATGCTT+TGG | + | chr3_4:40564266-40564285 | Msa0500270:intron | 30.0% | |
| ! | TTTAAAGCCTGAAAGAAAGA+AGG | - | chr3_4:40564345-40564364 | None:intergenic | 30.0% |
| ! | TTGATGGTTCAATGCATTTA+TGG | + | chr3_4:40564582-40564601 | Msa0500270:intron | 30.0% |
| ATGATCTGTATATGTCAAGA+CGG | + | chr3_4:40564693-40564712 | Msa0500270:CDS | 30.0% | |
| !! | TTTTGGCTATTTCAATGACA+TGG | + | chr3_4:40564794-40564813 | Msa0500270:intron | 30.0% |
| ATTGTAACAGTTCAAATACG+TGG | + | chr3_4:40564826-40564845 | Msa0500270:intron | 30.0% | |
| ! | TGAGAGGAATATTGATTGAT+TGG | + | chr3_4:40563382-40563401 | Msa0500270:CDS | 30.0% |
| AAATTCAAATCGGACATAGA+AGG | - | chr3_4:40563556-40563575 | None:intergenic | 30.0% | |
| AAAGCATAATTCTTCGACAT+GGG | - | chr3_4:40563672-40563691 | None:intergenic | 30.0% | |
| TAAAGCATAATTCTTCGACA+TGG | - | chr3_4:40563673-40563692 | None:intergenic | 30.0% | |
| !! | GATCATAAAAAGTATCGGAA+TGG | - | chr3_4:40563738-40563757 | None:intergenic | 30.0% |
| GGACATAAGTGTTATATGTT+TGG | + | chr3_4:40563785-40563804 | Msa0500270:intron | 30.0% | |
| TCTCAATTATATCGAGAGAT+TGG | + | chr3_4:40563894-40563913 | Msa0500270:intron | 30.0% | |
| !!! | ATCAATACAGGTTTTAGAGA+TGG | + | chr3_4:40564022-40564041 | Msa0500270:intron | 30.0% |
| AAGACCCTAGATAATGATAT+GGG | + | chr3_4:40564059-40564078 | Msa0500270:CDS | 30.0% | |
| CCTTAAAAAAGTCTTAACAG+TGG | - | chr3_4:40564090-40564109 | None:intergenic | 30.0% | |
| !!! | CCACTGTTAAGACTTTTTTA+AGG | + | chr3_4:40564087-40564106 | Msa0500270:CDS | 30.0% |
| TATTGTAGTTTCTGTGATAC+AGG | + | chr3_4:40564196-40564215 | Msa0500270:intron | 30.0% | |
| TTCATTGTCTATCTATGCTT+TGG | + | chr3_4:40564266-40564285 | Msa0500270:intron | 30.0% | |
| ! | TTTAAAGCCTGAAAGAAAGA+AGG | - | chr3_4:40564345-40564364 | None:intergenic | 30.0% |
| ! | TTGATGGTTCAATGCATTTA+TGG | + | chr3_4:40564582-40564601 | Msa0500270:intron | 30.0% |
| ATGATCTGTATATGTCAAGA+CGG | + | chr3_4:40564693-40564712 | Msa0500270:CDS | 30.0% | |
| !! | TTTTGGCTATTTCAATGACA+TGG | + | chr3_4:40564794-40564813 | Msa0500270:intron | 30.0% |
| ATTGTAACAGTTCAAATACG+TGG | + | chr3_4:40564826-40564845 | Msa0500270:intron | 30.0% | |
| AAGACCAATGAAGGATTACA+TGG | + | chr3_4:40563329-40563348 | Msa0500270:CDS | 35.0% | |
| ATCTCCATGTAATCCTTCAT+TGG | - | chr3_4:40563336-40563355 | None:intergenic | 35.0% | |
| GACATTGATCCAAAAATGAG+AGG | + | chr3_4:40563366-40563385 | Msa0500270:CDS | 35.0% | |
| !! | TCGCTGTTTCTTACATAGAT+AGG | + | chr3_4:40563454-40563473 | Msa0500270:CDS | 35.0% |
| AAGCATAATTCTTCGACATG+GGG | - | chr3_4:40563671-40563690 | None:intergenic | 35.0% | |
| TAATACATACAACAGAGACG+AGG | + | chr3_4:40563700-40563719 | Msa0500270:CDS | 35.0% | |
| TTTGGGTGCCTTAATAGTTT+GGG | + | chr3_4:40563803-40563822 | Msa0500270:intron | 35.0% | |
| AATTCCTGCCCAAACTATTA+AGG | - | chr3_4:40563814-40563833 | None:intergenic | 35.0% | |
| TGATTCCTTGTTAGTGTGTA+TGG | + | chr3_4:40563834-40563853 | Msa0500270:intron | 35.0% | |
| ! | GTTTTCCATACACACTAACA+AGG | - | chr3_4:40563842-40563861 | None:intergenic | 35.0% |
| CAAGACCCTAGATAATGATA+TGG | + | chr3_4:40564058-40564077 | Msa0500270:CDS | 35.0% | |
| ACTGCCCATATCATTATCTA+GGG | - | chr3_4:40564066-40564085 | None:intergenic | 35.0% | |
| TCTTGCTGAGCTAAGTTTAT+TGG | + | chr3_4:40564392-40564411 | Msa0500270:CDS | 35.0% | |
| ! | TGCTTGCTAGATTCATTGTT+TGG | + | chr3_4:40564466-40564485 | Msa0500270:intron | 35.0% |
| TATGATCAAATACTTGCCCA+GGG | - | chr3_4:40564504-40564523 | None:intergenic | 35.0% | |
| ATATGATCAAATACTTGCCC+AGG | - | chr3_4:40564505-40564524 | None:intergenic | 35.0% | |
| !! | GTATAAACCAGTTGAGTTGA+AGG | + | chr3_4:40564652-40564671 | Msa0500270:CDS | 35.0% |
| TGATCTGTATATGTCAAGAC+GGG | + | chr3_4:40564694-40564713 | Msa0500270:CDS | 35.0% | |
| AACAGATCACTTGGTAAATG+AGG | - | chr3_4:40564869-40564888 | None:intergenic | 35.0% | |
| AAGACCAATGAAGGATTACA+TGG | + | chr3_4:40563329-40563348 | Msa0500270:CDS | 35.0% | |
| ATCTCCATGTAATCCTTCAT+TGG | - | chr3_4:40563336-40563355 | None:intergenic | 35.0% | |
| GACATTGATCCAAAAATGAG+AGG | + | chr3_4:40563366-40563385 | Msa0500270:CDS | 35.0% | |
| !! | TCGCTGTTTCTTACATAGAT+AGG | + | chr3_4:40563454-40563473 | Msa0500270:CDS | 35.0% |
| AAGCATAATTCTTCGACATG+GGG | - | chr3_4:40563671-40563690 | None:intergenic | 35.0% | |
| TAATACATACAACAGAGACG+AGG | + | chr3_4:40563700-40563719 | Msa0500270:CDS | 35.0% | |
| TTTGGGTGCCTTAATAGTTT+GGG | + | chr3_4:40563803-40563822 | Msa0500270:intron | 35.0% | |
| AATTCCTGCCCAAACTATTA+AGG | - | chr3_4:40563814-40563833 | None:intergenic | 35.0% | |
| TGATTCCTTGTTAGTGTGTA+TGG | + | chr3_4:40563834-40563853 | Msa0500270:intron | 35.0% | |
| ! | GTTTTCCATACACACTAACA+AGG | - | chr3_4:40563842-40563861 | None:intergenic | 35.0% |
| CAAGACCCTAGATAATGATA+TGG | + | chr3_4:40564058-40564077 | Msa0500270:CDS | 35.0% | |
| ACTGCCCATATCATTATCTA+GGG | - | chr3_4:40564066-40564085 | None:intergenic | 35.0% | |
| TCTTGCTGAGCTAAGTTTAT+TGG | + | chr3_4:40564392-40564411 | Msa0500270:CDS | 35.0% | |
| ! | TGCTTGCTAGATTCATTGTT+TGG | + | chr3_4:40564466-40564485 | Msa0500270:intron | 35.0% |
| TATGATCAAATACTTGCCCA+GGG | - | chr3_4:40564504-40564523 | None:intergenic | 35.0% | |
| ATATGATCAAATACTTGCCC+AGG | - | chr3_4:40564505-40564524 | None:intergenic | 35.0% | |
| !! | GTATAAACCAGTTGAGTTGA+AGG | + | chr3_4:40564652-40564671 | Msa0500270:CDS | 35.0% |
| TGATCTGTATATGTCAAGAC+GGG | + | chr3_4:40564694-40564713 | Msa0500270:CDS | 35.0% | |
| AACAGATCACTTGGTAAATG+AGG | - | chr3_4:40564869-40564888 | None:intergenic | 35.0% | |
| GACAAAGAGAAGACCAATGA+AGG | + | chr3_4:40563320-40563339 | Msa0500270:CDS | 40.0% | |
| GAAGCTTGACCCTATTGATA+GGG | - | chr3_4:40563494-40563513 | None:intergenic | 40.0% | |
| TGAAGCTTGACCCTATTGAT+AGG | - | chr3_4:40563495-40563514 | None:intergenic | 40.0% | |
| TAGGGTCAAGCTTCAATTGT+TGG | + | chr3_4:40563500-40563519 | Msa0500270:CDS | 40.0% | |
| AGGGTCAAGCTTCAATTGTT+GGG | + | chr3_4:40563501-40563520 | Msa0500270:CDS | 40.0% | |
| ATAATTCTTCGACATGGGGT+GGG | - | chr3_4:40563667-40563686 | None:intergenic | 40.0% | |
| GTTTGGGTGCCTTAATAGTT+TGG | + | chr3_4:40563802-40563821 | Msa0500270:intron | 40.0% | |
| AGAGAGATCAACCCCTAAAA+AGG | + | chr3_4:40563870-40563889 | Msa0500270:intron | 40.0% | |
| GACTGCCCATATCATTATCT+AGG | - | chr3_4:40564067-40564086 | None:intergenic | 40.0% | |
| TGTAGTTTCTGTGATACAGG+AGG | + | chr3_4:40564199-40564218 | Msa0500270:intron | 40.0% | |
| !! | GACATTTCGAAAGCGTTGTT+AGG | + | chr3_4:40564288-40564307 | Msa0500270:intron | 40.0% |
| TGTGAGATTCTTGCCTTCTT+TGG | + | chr3_4:40564425-40564444 | Msa0500270:CDS | 40.0% | |
| ! | ATACCCAGAGTATTCTTGCA+GGG | - | chr3_4:40564636-40564655 | None:intergenic | 40.0% |
| ! | TATACCCAGAGTATTCTTGC+AGG | - | chr3_4:40564637-40564656 | None:intergenic | 40.0% |
| TGTATATGTCAAGACGGGAA+GGG | + | chr3_4:40564699-40564718 | Msa0500270:CDS | 40.0% | |
| ! | AAGGGTCATTTGAAGCTACT+CGG | + | chr3_4:40564717-40564736 | Msa0500270:CDS | 40.0% |
| GGAGAAATACAAGCAGTACA+AGG | + | chr3_4:40564739-40564758 | Msa0500270:CDS | 40.0% | |
| AGATCACTTGGTAAATGAGG+AGG | - | chr3_4:40564866-40564885 | None:intergenic | 40.0% | |
| GACAAAGAGAAGACCAATGA+AGG | + | chr3_4:40563320-40563339 | Msa0500270:CDS | 40.0% | |
| GAAGCTTGACCCTATTGATA+GGG | - | chr3_4:40563494-40563513 | None:intergenic | 40.0% | |
| TGAAGCTTGACCCTATTGAT+AGG | - | chr3_4:40563495-40563514 | None:intergenic | 40.0% | |
| TAGGGTCAAGCTTCAATTGT+TGG | + | chr3_4:40563500-40563519 | Msa0500270:CDS | 40.0% | |
| AGGGTCAAGCTTCAATTGTT+GGG | + | chr3_4:40563501-40563520 | Msa0500270:CDS | 40.0% | |
| ATAATTCTTCGACATGGGGT+GGG | - | chr3_4:40563667-40563686 | None:intergenic | 40.0% | |
| GTTTGGGTGCCTTAATAGTT+TGG | + | chr3_4:40563802-40563821 | Msa0500270:intron | 40.0% | |
| AGAGAGATCAACCCCTAAAA+AGG | + | chr3_4:40563870-40563889 | Msa0500270:intron | 40.0% | |
| GACTGCCCATATCATTATCT+AGG | - | chr3_4:40564067-40564086 | None:intergenic | 40.0% | |
| TGTAGTTTCTGTGATACAGG+AGG | + | chr3_4:40564199-40564218 | Msa0500270:intron | 40.0% | |
| !! | GACATTTCGAAAGCGTTGTT+AGG | + | chr3_4:40564288-40564307 | Msa0500270:intron | 40.0% |
| TGTGAGATTCTTGCCTTCTT+TGG | + | chr3_4:40564425-40564444 | Msa0500270:CDS | 40.0% | |
| ! | ATACCCAGAGTATTCTTGCA+GGG | - | chr3_4:40564636-40564655 | None:intergenic | 40.0% |
| ! | TATACCCAGAGTATTCTTGC+AGG | - | chr3_4:40564637-40564656 | None:intergenic | 40.0% |
| TGTATATGTCAAGACGGGAA+GGG | + | chr3_4:40564699-40564718 | Msa0500270:CDS | 40.0% | |
| ! | AAGGGTCATTTGAAGCTACT+CGG | + | chr3_4:40564717-40564736 | Msa0500270:CDS | 40.0% |
| GGAGAAATACAAGCAGTACA+AGG | + | chr3_4:40564739-40564758 | Msa0500270:CDS | 40.0% | |
| AGATCACTTGGTAAATGAGG+AGG | - | chr3_4:40564866-40564885 | None:intergenic | 40.0% | |
| GGCTTACGATGCAATGTACA+TGG | - | chr3_4:40563535-40563554 | None:intergenic | 45.0% | |
| CATAATTCTTCGACATGGGG+TGG | - | chr3_4:40563668-40563687 | None:intergenic | 45.0% | |
| TTGGTCTCAGTAGTTGCGTT+TGG | + | chr3_4:40563913-40563932 | Msa0500270:intron | 45.0% | |
| TGGTCTCAGTAGTTGCGTTT+GGG | + | chr3_4:40563914-40563933 | Msa0500270:intron | 45.0% | |
| GAGATTCTTGCCTTCTTTGG+TGG | + | chr3_4:40564428-40564447 | Msa0500270:CDS | 45.0% | |
| TTTGGCCCAAAACTTATCCC+TGG | + | chr3_4:40564484-40564503 | Msa0500270:intron | 45.0% | |
| TTGGCCCAAAACTTATCCCT+GGG | + | chr3_4:40564485-40564504 | Msa0500270:intron | 45.0% | |
| ! | CTTGCCCAGGGATAAGTTTT+GGG | - | chr3_4:40564492-40564511 | None:intergenic | 45.0% |
| ! | ACTTGCCCAGGGATAAGTTT+TGG | - | chr3_4:40564493-40564512 | None:intergenic | 45.0% |
| ACGCATTCCTTCAACTCAAC+TGG | - | chr3_4:40564662-40564681 | None:intergenic | 45.0% | |
| CTGTATATGTCAAGACGGGA+AGG | + | chr3_4:40564698-40564717 | Msa0500270:CDS | 45.0% | |
| ! | AGGGTCATTTGAAGCTACTC+GGG | + | chr3_4:40564718-40564737 | Msa0500270:CDS | 45.0% |
| TTGGTAAATGAGGAGGCGAA+GGG | - | chr3_4:40564859-40564878 | None:intergenic | 45.0% | |
| GGCTTACGATGCAATGTACA+TGG | - | chr3_4:40563535-40563554 | None:intergenic | 45.0% | |
| CATAATTCTTCGACATGGGG+TGG | - | chr3_4:40563668-40563687 | None:intergenic | 45.0% | |
| TTGGTCTCAGTAGTTGCGTT+TGG | + | chr3_4:40563913-40563932 | Msa0500270:intron | 45.0% | |
| TGGTCTCAGTAGTTGCGTTT+GGG | + | chr3_4:40563914-40563933 | Msa0500270:intron | 45.0% | |
| GAGATTCTTGCCTTCTTTGG+TGG | + | chr3_4:40564428-40564447 | Msa0500270:CDS | 45.0% | |
| TTTGGCCCAAAACTTATCCC+TGG | + | chr3_4:40564484-40564503 | Msa0500270:intron | 45.0% | |
| TTGGCCCAAAACTTATCCCT+GGG | + | chr3_4:40564485-40564504 | Msa0500270:intron | 45.0% | |
| ! | CTTGCCCAGGGATAAGTTTT+GGG | - | chr3_4:40564492-40564511 | None:intergenic | 45.0% |
| ! | ACTTGCCCAGGGATAAGTTT+TGG | - | chr3_4:40564493-40564512 | None:intergenic | 45.0% |
| ACGCATTCCTTCAACTCAAC+TGG | - | chr3_4:40564662-40564681 | None:intergenic | 45.0% | |
| CTGTATATGTCAAGACGGGA+AGG | + | chr3_4:40564698-40564717 | Msa0500270:CDS | 45.0% | |
| ! | AGGGTCATTTGAAGCTACTC+GGG | + | chr3_4:40564718-40564737 | Msa0500270:CDS | 45.0% |
| TTGGTAAATGAGGAGGCGAA+GGG | - | chr3_4:40564859-40564878 | None:intergenic | 45.0% | |
| GGTGCCTTAATAGTTTGGGC+AGG | + | chr3_4:40563807-40563826 | Msa0500270:intron | 50.0% | |
| GGTCTCAGTAGTTGCGTTTG+GGG | + | chr3_4:40563915-40563934 | Msa0500270:intron | 50.0% | |
| TCAGCCCTGCAAGAATACTC+TGG | + | chr3_4:40564629-40564648 | Msa0500270:CDS | 50.0% | |
| CAGCCCTGCAAGAATACTCT+GGG | + | chr3_4:40564630-40564649 | Msa0500270:CDS | 50.0% | |
| CTTGGTAAATGAGGAGGCGA+AGG | - | chr3_4:40564860-40564879 | None:intergenic | 50.0% | |
| GGTGCCTTAATAGTTTGGGC+AGG | + | chr3_4:40563807-40563826 | Msa0500270:intron | 50.0% | |
| GGTCTCAGTAGTTGCGTTTG+GGG | + | chr3_4:40563915-40563934 | Msa0500270:intron | 50.0% | |
| TCAGCCCTGCAAGAATACTC+TGG | + | chr3_4:40564629-40564648 | Msa0500270:CDS | 50.0% | |
| CAGCCCTGCAAGAATACTCT+GGG | + | chr3_4:40564630-40564649 | Msa0500270:CDS | 50.0% | |
| CTTGGTAAATGAGGAGGCGA+AGG | - | chr3_4:40564860-40564879 | None:intergenic | 50.0% | |
| ATCGACGCAGCCACCAAAGA+AGG | - | chr3_4:40564441-40564460 | None:intergenic | 55.0% | |
| GTAAATGAGGAGGCGAAGGG+AGG | - | chr3_4:40564856-40564875 | None:intergenic | 55.0% | |
| ATCGACGCAGCCACCAAAGA+AGG | - | chr3_4:40564441-40564460 | None:intergenic | 55.0% | |
| GTAAATGAGGAGGCGAAGGG+AGG | - | chr3_4:40564856-40564875 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 40563315 | 40564892 | 40563315 | ID=Msa0500270;Name=Msa0500270 |
| chr3_4 | mRNA | 40563315 | 40564892 | 40563315 | ID=Msa0500270-mRNA-1;Parent=Msa0500270;Name=Msa0500270-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|6|0|240 |
| chr3_4 | exon | 40563315 | 40563547 | 40563315 | ID=Msa0500270-mRNA-1:exon:8238;Parent=Msa0500270-mRNA-1 |
| chr3_4 | exon | 40563646 | 40563721 | 40563646 | ID=Msa0500270-mRNA-1:exon:8239;Parent=Msa0500270-mRNA-1 |
| chr3_4 | exon | 40564032 | 40564127 | 40564032 | ID=Msa0500270-mRNA-1:exon:8240;Parent=Msa0500270-mRNA-1 |
| chr3_4 | exon | 40564357 | 40564482 | 40564357 | ID=Msa0500270-mRNA-1:exon:8241;Parent=Msa0500270-mRNA-1 |
| chr3_4 | exon | 40564626 | 40564760 | 40564626 | ID=Msa0500270-mRNA-1:exon:8242;Parent=Msa0500270-mRNA-1 |
| chr3_4 | exon | 40564836 | 40564892 | 40564836 | ID=Msa0500270-mRNA-1:exon:8243;Parent=Msa0500270-mRNA-1 |
| chr3_4 | CDS | 40563315 | 40563547 | 40563315 | ID=Msa0500270-mRNA-1:cds;Parent=Msa0500270-mRNA-1 |
| chr3_4 | CDS | 40563646 | 40563721 | 40563646 | ID=Msa0500270-mRNA-1:cds;Parent=Msa0500270-mRNA-1 |
| chr3_4 | CDS | 40564032 | 40564127 | 40564032 | ID=Msa0500270-mRNA-1:cds;Parent=Msa0500270-mRNA-1 |
| chr3_4 | CDS | 40564357 | 40564482 | 40564357 | ID=Msa0500270-mRNA-1:cds;Parent=Msa0500270-mRNA-1 |
| chr3_4 | CDS | 40564626 | 40564760 | 40564626 | ID=Msa0500270-mRNA-1:cds;Parent=Msa0500270-mRNA-1 |
| chr3_4 | CDS | 40564836 | 40564892 | 40564836 | ID=Msa0500270-mRNA-1:cds;Parent=Msa0500270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
