Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513650 | AES71829.2 | 91.351 | 185 | 8 | 1 | 4 | 180 | 2 | 186 | 1.86e-118 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513650 | sp|A7SLC8|NAT9_NEMVE | 46.369 | 179 | 68 | 3 | 13 | 166 | 7 | 182 | 1.02e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513650 | G7J9J0 | 91.351 | 185 | 8 | 1 | 4 | 180 | 2 | 186 | 8.87e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0129060 | Msa0513650 | 0.807715 | 4.414994e-50 | -8.615850e-47 |
| Msa0187930 | Msa0513650 | 0.805522 | 1.282129e-49 | -8.615850e-47 |
| Msa0194540 | Msa0513650 | 0.813427 | 2.574344e-51 | -8.615850e-47 |
| Msa0244780 | Msa0513650 | 0.801364 | 9.323433e-49 | -8.615850e-47 |
| Msa0268130 | Msa0513650 | 0.815673 | 8.196877e-52 | -8.615850e-47 |
| Msa0298990 | Msa0513650 | 0.806853 | 6.722212e-50 | -8.615850e-47 |
| Msa0513650 | Msa0687630 | 0.802676 | 5.011615e-49 | -8.615850e-47 |
| Msa0513650 | Msa0968590 | 0.813093 | 3.047649e-51 | -8.615850e-47 |
| Msa0513650 | Msa1081150 | 0.827002 | 1.990192e-54 | -8.615850e-47 |
| Msa0513650 | Msa1126510 | 0.808767 | 2.634532e-50 | -8.615850e-47 |
| Msa0513650 | Msa1166860 | 0.802095 | 6.599766e-49 | -8.615850e-47 |
| Msa0513650 | Msa1255040 | -0.800416 | 1.456282e-48 | -8.615850e-47 |
| Msa0513650 | Msa1257510 | 0.817682 | 2.905277e-52 | -8.615850e-47 |
| Msa0513650 | Msa1307950 | 0.800222 | 1.594908e-48 | -8.615850e-47 |
| Msa0513650 | Msa1404190 | 0.800209 | 1.604347e-48 | -8.615850e-47 |
| Msa0513650 | Msa1443780 | 0.800221 | 1.595849e-48 | -8.615850e-47 |
| Msa0513650 | Msa1448690 | 0.801591 | 8.377422e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513650 | MtrunA17_Chr3g0121041 | 83.663 | 202 | 8 | 2 | 4 | 180 | 2 | 203 | 3.47e-118 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513650 | AT2G04845.1 | 57.286 | 199 | 60 | 2 | 7 | 180 | 3 | 201 | 4.91e-74 | 222 |
| Msa0513650 | AT2G04845.5 | 58.621 | 174 | 47 | 2 | 7 | 155 | 3 | 176 | 1.70e-69 | 210 |
| Msa0513650 | AT2G04845.3 | 55.080 | 187 | 72 | 3 | 6 | 180 | 2 | 188 | 1.98e-68 | 207 |
| Msa0513650 | AT2G04845.4 | 55.376 | 186 | 71 | 3 | 7 | 180 | 3 | 188 | 1.99e-68 | 207 |
| Msa0513650 | AT2G04845.2 | 58.434 | 166 | 58 | 2 | 7 | 161 | 3 | 168 | 6.11e-68 | 205 |
Find 63 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATCCATTCATGATATT+TGG | 0.076576 | 3_4:-63907790 | None:intergenic |
| ACCAAGCATCTCCTCATTCT+TGG | 0.266496 | 3_4:-63911784 | None:intergenic |
| TTGGATAAAGACTTGCTTCT+TGG | 0.270404 | 3_4:+63907921 | Msa0513650:CDS |
| CCATCTTAACAAGGATAAAA+TGG | 0.271503 | 3_4:-63912028 | None:intergenic |
| TTCGATGGCGGCGGCGGCGG+CGG | 0.296755 | 3_4:+63907695 | Msa0513650:exon |
| TGCATCCATTCATGATATTT+GGG | 0.307846 | 3_4:-63907789 | None:intergenic |
| AAAGGAAATGTGAGTTTAGA+AGG | 0.318086 | 3_4:+63907726 | Msa0513650:CDS |
| CAAGGAAACTTTCATTCTCT+TGG | 0.318845 | 3_4:+63907902 | Msa0513650:CDS |
| GAGTTCGATGGCGGCGGCGG+CGG | 0.327667 | 3_4:+63907692 | Msa0513650:exon |
| GCCTTTGCTATTGAGAAGTT+GGG | 0.345000 | 3_4:+63909179 | Msa0513650:CDS |
| ATTTCAACCTCTGCTATTTG+AGG | 0.378004 | 3_4:-63908107 | None:intergenic |
| CATAGCCGTGGCAAAGGACT+TGG | 0.395075 | 3_4:+63909131 | Msa0513650:CDS |
| GCGGAGTTCGATGGCGGCGG+CGG | 0.403087 | 3_4:+63907689 | Msa0513650:exon |
| TGAGGAGATGCTTGGTTTGA+TGG | 0.406506 | 3_4:+63911791 | Msa0513650:CDS |
| GGAACGTGAGGTTCCATGTA+AGG | 0.410623 | 3_4:-63907768 | None:intergenic |
| CTTCTTGGAACCTTCTCTCA+TGG | 0.417969 | 3_4:+63907936 | Msa0513650:CDS |
| GCGGCGGCGGCGAGGAAGAA+AGG | 0.437378 | 3_4:+63907708 | Msa0513650:CDS |
| GGCCTTTGCTATTGAGAAGT+TGG | 0.437922 | 3_4:+63909178 | Msa0513650:CDS |
| ATACTCTTGTTCGAGAGAAA+GGG | 0.455235 | 3_4:-63907847 | None:intergenic |
| TTTCTGCAGCTTATGCGTTA+CGG | 0.455651 | 3_4:-63907621 | None:intergenic |
| GATACTCTTGTTCGAGAGAA+AGG | 0.456194 | 3_4:-63907848 | None:intergenic |
| CTTGTTGAGATCACGTGACC+AGG | 0.456827 | 3_4:-63907883 | None:intergenic |
| GCTGCGCTTTGCTCTTGCCA+CGG | 0.465838 | 3_4:-63907665 | None:intergenic |
| GCGGCGGAGTTCGATGGCGG+CGG | 0.470509 | 3_4:+63907686 | Msa0513650:exon |
| ATTTGTTTGACAGGTGACTT+TGG | 0.470985 | 3_4:+63911743 | Msa0513650:intron |
| GTCAAATTCTTACACTTGAA+AGG | 0.486297 | 3_4:-63911970 | None:intergenic |
| ACGTTCCCAAATATCATGAA+TGG | 0.490153 | 3_4:+63907784 | Msa0513650:CDS |
| CATGGTCAACCCCACGTTGA+AGG | 0.491566 | 3_4:+63907954 | Msa0513650:CDS |
| GGTAATACTGGTCCCTTACA+TGG | 0.495614 | 3_4:+63907755 | Msa0513650:CDS |
| AGCGCAGCGGCGGAGTTCGA+TGG | 0.496615 | 3_4:+63907680 | Msa0513650:exon |
| ACATTATTGACCTTCAACGT+GGG | 0.501922 | 3_4:-63907964 | None:intergenic |
| CTAATGTCACAATCTTGTAT+TGG | 0.503254 | 3_4:-63911930 | None:intergenic |
| TTGTTCGAGAGAAAGGGGTT+CGG | 0.511970 | 3_4:-63907841 | None:intergenic |
| TGTGAGTTTAGAAGGAAAGA+AGG | 0.512492 | 3_4:+63907734 | Msa0513650:CDS |
| AGAAGGAAAGAAGGTAATAC+TGG | 0.516666 | 3_4:+63907743 | Msa0513650:CDS |
| GCCAAGAATGAGGAGATGCT+TGG | 0.528942 | 3_4:+63911783 | Msa0513650:CDS |
| TCACAATCTTGTATTGGTAA+TGG | 0.544490 | 3_4:-63911924 | None:intergenic |
| GCAGTGGCTTGAAGTAGAGA+AGG | 0.544829 | 3_4:-63907816 | None:intergenic |
| GCAAGAGCAAAGCGCAGCGG+CGG | 0.545002 | 3_4:+63907670 | Msa0513650:five_prime_UTR |
| AGTATCAGATGCAACTCTCC+TGG | 0.549318 | 3_4:+63907865 | Msa0513650:CDS |
| TGTTAGCATAGCCGTGGCAA+AGG | 0.550626 | 3_4:+63909125 | Msa0513650:intron |
| CCGCTATTTGCAGCTATGGT+TGG | 0.553290 | 3_4:+63908050 | Msa0513650:intron |
| GCAGCGGCGGAGTTCGATGG+CGG | 0.564183 | 3_4:+63907683 | Msa0513650:exon |
| TCATGATATTTGGGAACGTG+AGG | 0.569678 | 3_4:-63907780 | None:intergenic |
| GAGGAGATGCTTGGTTTGAT+GGG | 0.572308 | 3_4:+63911792 | Msa0513650:CDS |
| CCTTTGCTATTGAGAAGTTG+GGG | 0.572445 | 3_4:+63909180 | Msa0513650:CDS |
| AATAACACAAGCCAAGAATG+AGG | 0.587170 | 3_4:+63911773 | Msa0513650:CDS |
| AGAAAGGGGTTCGGAAGCAG+TGG | 0.587837 | 3_4:-63907832 | None:intergenic |
| CCTTTCCAAGTCCTTTGCCA+CGG | 0.588992 | 3_4:-63909136 | None:intergenic |
| AACATTATTGACCTTCAACG+TGG | 0.591929 | 3_4:-63907965 | None:intergenic |
| TACTCTTGTTCGAGAGAAAG+GGG | 0.600981 | 3_4:-63907846 | None:intergenic |
| CCGTGGCAAAGGACTTGGAA+AGG | 0.603951 | 3_4:+63909136 | Msa0513650:CDS |
| CGTGTGAACCCATCTTAACA+AGG | 0.606372 | 3_4:-63912037 | None:intergenic |
| CCCCAACTTCTCAATAGCAA+AGG | 0.607006 | 3_4:-63909180 | None:intergenic |
| CTGGTCACGTGATCTCAACA+AGG | 0.618601 | 3_4:+63907884 | Msa0513650:CDS |
| AAAATCAATTGGTCAGTCCG+TGG | 0.631608 | 3_4:+63907648 | Msa0513650:five_prime_UTR |
| CATTATTGACCTTCAACGTG+GGG | 0.634827 | 3_4:-63907963 | None:intergenic |
| GAACGTGAGGTTCCATGTAA+GGG | 0.638354 | 3_4:-63907767 | None:intergenic |
| CAGTGGCTTGAAGTAGAGAA+GGG | 0.645058 | 3_4:-63907815 | None:intergenic |
| CAATGATCCTCAAATAGCAG+AGG | 0.657129 | 3_4:+63908100 | Msa0513650:CDS |
| GTGGGGTTGACCATGAGAGA+AGG | 0.659157 | 3_4:-63907946 | None:intergenic |
| AAATACGCACATCATGAACA+AGG | 0.665884 | 3_4:-63911889 | None:intergenic |
| GTGGCAAGAGCAAAGCGCAG+CGG | 0.684523 | 3_4:+63907667 | Msa0513650:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCTAAATTATCTATTTA+GGG | - | chr3_4:63909343-63909362 | None:intergenic | 10.0% |
| !! | ATATTCTAAATTATCTATTT+AGG | - | chr3_4:63909344-63909363 | None:intergenic | 10.0% |
| !! | TTTGAATAAAAATGACATAA+TGG | - | chr3_4:63908258-63908277 | None:intergenic | 15.0% |
| !!! | TTGAATATTTAAAATTGTGA+CGG | - | chr3_4:63908848-63908867 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTAGAACATAGA+TGG | - | chr3_4:63908967-63908986 | None:intergenic | 15.0% |
| !! | TTTAAGAAATATGATAGAAT+AGG | + | chr3_4:63910403-63910422 | Msa0513650:intron | 15.0% |
| !!! | TGTTATTGTAATTTTAACTA+AGG | + | chr3_4:63911191-63911210 | Msa0513650:intron | 15.0% |
| !!! | CTTTTTAAAATCAAACTTTT+CGG | + | chr3_4:63911337-63911356 | Msa0513650:intron | 15.0% |
| !! | GCAGAAAAAAAAAAATCAAT+TGG | + | chr3_4:63907637-63907656 | Msa0513650:five_prime_UTR | 20.0% |
| !!! | AATGTTTTAATAGATATCTC+AGG | + | chr3_4:63908469-63908488 | Msa0513650:intron | 20.0% |
| !! | AAATGCTCAAAATTTGTATT+TGG | + | chr3_4:63908749-63908768 | Msa0513650:intron | 20.0% |
| !!! | AAAACTTTTCAGGTTAAAAT+TGG | + | chr3_4:63909206-63909225 | Msa0513650:intron | 20.0% |
| !! | ATATTCTCGATTATCTATTT+AGG | - | chr3_4:63909507-63909526 | None:intergenic | 20.0% |
| !!! | TTTCTATTTTTCAGATAAAC+AGG | - | chr3_4:63909725-63909744 | None:intergenic | 20.0% |
| !! | TCTGAAAAATAGAAATTGAA+TGG | + | chr3_4:63909730-63909749 | Msa0513650:intron | 20.0% |
| !! | CTGAAAAATAGAAATTGAAT+GGG | + | chr3_4:63909731-63909750 | Msa0513650:intron | 20.0% |
| !! | TGAAAAATAGAAATTGAATG+GGG | + | chr3_4:63909732-63909751 | Msa0513650:intron | 20.0% |
| !! | TGTTTCATAAACTACAAAAA+GGG | - | chr3_4:63910254-63910273 | None:intergenic | 20.0% |
| !! | ATGTTTCATAAACTACAAAA+AGG | - | chr3_4:63910255-63910274 | None:intergenic | 20.0% |
| !!! | TGAAGTTACAGTTTTTTTAT+TGG | + | chr3_4:63910798-63910817 | Msa0513650:intron | 20.0% |
| !!! | AAAATATTCTTTTAGAACCA+TGG | + | chr3_4:63910878-63910897 | Msa0513650:intron | 20.0% |
| !!! | TAATTTCAAATTTTCAACAG+AGG | + | chr3_4:63911074-63911093 | Msa0513650:intron | 20.0% |
| !!! | CGAAAAGTTTGATTTTAAAA+AGG | - | chr3_4:63911339-63911358 | None:intergenic | 20.0% |
| !! | ATGGTTAAAACAAAAACTTA+AGG | - | chr3_4:63911567-63911586 | None:intergenic | 20.0% |
| !!! | AAGTTAGAGGTGTTAAAAAT+AGG | + | chr3_4:63908495-63908514 | Msa0513650:intron | 25.0% |
| ! | GATGAAAATTACTTTAGTAC+AGG | + | chr3_4:63908526-63908545 | Msa0513650:intron | 25.0% |
| ! | ATGCTCTACTTGATTTATAA+AGG | - | chr3_4:63908552-63908571 | None:intergenic | 25.0% |
| ! | AATTTGTATTTGGTCTCAAT+TGG | + | chr3_4:63908759-63908778 | Msa0513650:intron | 25.0% |
| !!! | GCATATGTATACTTTTTAAC+TGG | + | chr3_4:63908807-63908826 | Msa0513650:intron | 25.0% |
| !!! | ATCTAGAAGTCTTATGTTTT+GGG | + | chr3_4:63909036-63909055 | Msa0513650:intron | 25.0% |
| ! | ATTGTCTTATGTATTAAGAC+AGG | - | chr3_4:63909434-63909453 | None:intergenic | 25.0% |
| ! | TGTCTTAATACATAAGACAA+TGG | + | chr3_4:63909433-63909452 | Msa0513650:intron | 25.0% |
| ! | GAATATAGAATCGAAATACA+AGG | + | chr3_4:63909561-63909580 | Msa0513650:intron | 25.0% |
| ! | TTTGTCTTATGTATTAAGAC+AGG | - | chr3_4:63909598-63909617 | None:intergenic | 25.0% |
| ! | TGTCTTAATACATAAGACAA+AGG | + | chr3_4:63909433-63909452 | Msa0513650:intron | 25.0% |
| ! | GTTAAGGTTATTATAGAACT+TGG | - | chr3_4:63909915-63909934 | None:intergenic | 25.0% |
| ! | ACCTTAACACACATTATAAA+TGG | + | chr3_4:63909927-63909946 | Msa0513650:intron | 25.0% |
| ! | ACCATTTATAATGTGTGTTA+AGG | - | chr3_4:63909931-63909950 | None:intergenic | 25.0% |
| ! | TTACTTCTTAATTTAATCGC+TGG | + | chr3_4:63909986-63910005 | Msa0513650:intron | 25.0% |
| !! | TGAAAATTTTGTCCATCAAA+TGG | - | chr3_4:63910067-63910086 | None:intergenic | 25.0% |
| ! | ATTGATCAATTCAATGACTT+TGG | - | chr3_4:63910183-63910202 | None:intergenic | 25.0% |
| ! | TATAAATAGGAGAACACAAA+GGG | - | chr3_4:63910510-63910529 | None:intergenic | 25.0% |
| !!! | ACAGTGCTATTTGTATAAAT+AGG | - | chr3_4:63910523-63910542 | None:intergenic | 25.0% |
| ! | TAAGAGTTGTTAATTACTTG+AGG | - | chr3_4:63910555-63910574 | None:intergenic | 25.0% |
| !! | GAACTTAGGATTTAGAATAA+TGG | - | chr3_4:63910601-63910620 | None:intergenic | 25.0% |
| !! | TCTACTTGTTAAATTCTCTA+TGG | + | chr3_4:63910652-63910671 | Msa0513650:intron | 25.0% |
| !!! | AAAGCCTTTAAAATGAAAGA+TGG | - | chr3_4:63910753-63910772 | None:intergenic | 25.0% |
| !!! | ATCTTTCATTTTAAAGGCTT+TGG | + | chr3_4:63910752-63910771 | Msa0513650:intron | 25.0% |
| ! | AATCAATTCTATAAAAGCCA+TGG | - | chr3_4:63910898-63910917 | None:intergenic | 25.0% |
| ! | GATTAAGGTAAATTGAAATC+TGG | + | chr3_4:63911301-63911320 | Msa0513650:intron | 25.0% |
| !! | GTTTATTATGTTCTGAATGA+TGG | - | chr3_4:63911586-63911605 | None:intergenic | 25.0% |
| !! | CATTTTATCCTTGTTAAGAT+GGG | + | chr3_4:63912029-63912048 | Msa0513650:three_prime_UTR | 25.0% |
| AAAGGAAATGTGAGTTTAGA+AGG | + | chr3_4:63907726-63907745 | Msa0513650:CDS | 30.0% | |
| TGCATCCATTCATGATATTT+GGG | - | chr3_4:63907792-63907811 | None:intergenic | 30.0% | |
| TTGCATCCATTCATGATATT+TGG | - | chr3_4:63907793-63907812 | None:intergenic | 30.0% | |
| TCAGCAACAAGTTTATAAGT+AGG | - | chr3_4:63908157-63908176 | None:intergenic | 30.0% | |
| GTCATGATTGTAACTTATTG+AGG | + | chr3_4:63908339-63908358 | Msa0513650:intron | 30.0% | |
| ATATCTCAGGTAAAAGTTAG+AGG | + | chr3_4:63908482-63908501 | Msa0513650:intron | 30.0% | |
| !! | AAGTTCTGGAAAACTTGTAT+TGG | + | chr3_4:63908922-63908941 | Msa0513650:intron | 30.0% |
| !! | CATCTAGAAGTCTTATGTTT+TGG | + | chr3_4:63909035-63909054 | Msa0513650:intron | 30.0% |
| !!! | CAGTTTTTTAAACAGGTTGA+TGG | - | chr3_4:63909249-63909268 | None:intergenic | 30.0% |
| CATCAACCTGTTTAAAAAAC+TGG | + | chr3_4:63909247-63909266 | Msa0513650:intron | 30.0% | |
| AAAAAAAGATAGAGAAGCAG+CGG | - | chr3_4:63909278-63909297 | None:intergenic | 30.0% | |
| CTCTTCATATTAAATGCATG+AGG | + | chr3_4:63909299-63909318 | Msa0513650:intron | 30.0% | |
| GAATATAGAGTCGAAATACA+AGG | + | chr3_4:63909398-63909417 | Msa0513650:intron | 30.0% | |
| TAGAATATCACTTCTGATAC+TGG | + | chr3_4:63909531-63909550 | Msa0513650:intron | 30.0% | |
| ! | AAGACAAAGGTACATTATAC+AGG | + | chr3_4:63909610-63909629 | Msa0513650:intron | 30.0% |
| ! | AGACAAAGGTACATTATACA+GGG | + | chr3_4:63909611-63909630 | Msa0513650:intron | 30.0% |
| TTTCAGATAAACAGGTAGAA+AGG | - | chr3_4:63909717-63909736 | None:intergenic | 30.0% | |
| AGCGGTTATGATTATGATTA+TGG | - | chr3_4:63909792-63909811 | None:intergenic | 30.0% | |
| !! | GAACTTGGCTTTTATAACTA+AGG | - | chr3_4:63909900-63909919 | None:intergenic | 30.0% |
| TTGTAAGTTGTTGTCAAACA+AGG | + | chr3_4:63910037-63910056 | Msa0513650:intron | 30.0% | |
| AAACAAGGTTATCCATTTGA+TGG | + | chr3_4:63910052-63910071 | Msa0513650:intron | 30.0% | |
| GAAGAATATTCTTTGAACCA+TGG | + | chr3_4:63910283-63910302 | Msa0513650:intron | 30.0% | |
| AATCAATTCATATGAAGCCA+TGG | - | chr3_4:63910303-63910322 | None:intergenic | 30.0% | |
| TGTCTTTCTTTGTCTTTGTT+AGG | + | chr3_4:63910346-63910365 | Msa0513650:intron | 30.0% | |
| ! | AGAGTATTCTCTATTGTGAA+GGG | - | chr3_4:63910454-63910473 | None:intergenic | 30.0% |
| ! | TAGAGTATTCTCTATTGTGA+AGG | - | chr3_4:63910455-63910474 | None:intergenic | 30.0% |
| GTATAAATAGGAGAACACAA+AGG | - | chr3_4:63910511-63910530 | None:intergenic | 30.0% | |
| TTAAAATGAAAGATGGACAG+AGG | - | chr3_4:63910746-63910765 | None:intergenic | 30.0% | |
| ! | CTGTCCATCTTTCATTTTAA+AGG | + | chr3_4:63910746-63910765 | Msa0513650:intron | 30.0% |
| ! | ACATAGCAACATTTTCAAAG+AGG | + | chr3_4:63911041-63911060 | Msa0513650:CDS | 30.0% |
| TAGTCAAAACAATTGAGACT+GGG | - | chr3_4:63911240-63911259 | None:intergenic | 30.0% | |
| ATAGTCAAAACAATTGAGAC+TGG | - | chr3_4:63911241-63911260 | None:intergenic | 30.0% | |
| AGTTACAAGCTAAGTGATTA+AGG | + | chr3_4:63911286-63911305 | Msa0513650:intron | 30.0% | |
| TAACAGTTTGTGAAATCAAC+AGG | - | chr3_4:63911408-63911427 | None:intergenic | 30.0% | |
| AAGAAGAAAACCGCATATAA+CGG | - | chr3_4:63911684-63911703 | None:intergenic | 30.0% | |
| !! | TTGTTCCTAATTTGTTTGAC+AGG | + | chr3_4:63911734-63911753 | Msa0513650:intron | 30.0% |
| ! | TCACAATCTTGTATTGGTAA+TGG | - | chr3_4:63911927-63911946 | None:intergenic | 30.0% |
| CTAATGTCACAATCTTGTAT+TGG | - | chr3_4:63911933-63911952 | None:intergenic | 30.0% | |
| GTCAAATTCTTACACTTGAA+AGG | - | chr3_4:63911973-63911992 | None:intergenic | 30.0% | |
| CCATCTTAACAAGGATAAAA+TGG | - | chr3_4:63912031-63912050 | None:intergenic | 30.0% | |
| ! | CCATTTTATCCTTGTTAAGA+TGG | + | chr3_4:63912028-63912047 | Msa0513650:three_prime_UTR | 30.0% |
| TGTGAGTTTAGAAGGAAAGA+AGG | + | chr3_4:63907734-63907753 | Msa0513650:CDS | 35.0% | |
| AGAAGGAAAGAAGGTAATAC+TGG | + | chr3_4:63907743-63907762 | Msa0513650:CDS | 35.0% | |
| ACGTTCCCAAATATCATGAA+TGG | + | chr3_4:63907784-63907803 | Msa0513650:CDS | 35.0% | |
| ATACTCTTGTTCGAGAGAAA+GGG | - | chr3_4:63907850-63907869 | None:intergenic | 35.0% | |
| CAAGGAAACTTTCATTCTCT+TGG | + | chr3_4:63907902-63907921 | Msa0513650:CDS | 35.0% | |
| ! | TTGGATAAAGACTTGCTTCT+TGG | + | chr3_4:63907921-63907940 | Msa0513650:CDS | 35.0% |
| ACATTATTGACCTTCAACGT+GGG | - | chr3_4:63907967-63907986 | None:intergenic | 35.0% | |
| AACATTATTGACCTTCAACG+TGG | - | chr3_4:63907968-63907987 | None:intergenic | 35.0% | |
| ! | ATTTCAACCTCTGCTATTTG+AGG | - | chr3_4:63908110-63908129 | None:intergenic | 35.0% |
| TTATGATAGCTGAACAAACC+AGG | + | chr3_4:63908129-63908148 | Msa0513650:intron | 35.0% | |
| CAAGTTTATAAGTAGGTACC+TGG | - | chr3_4:63908150-63908169 | None:intergenic | 35.0% | |
| GCTCCAACATTTCTTATTGA+AGG | + | chr3_4:63908181-63908200 | Msa0513650:intron | 35.0% | |
| AGGCCTTCAATAAGAAATGT+TGG | - | chr3_4:63908187-63908206 | None:intergenic | 35.0% | |
| GTAAATGTAATCACATGCTC+CGG | - | chr3_4:63908232-63908251 | None:intergenic | 35.0% | |
| TTATTGAGGATGCATGTGTT+GGG | + | chr3_4:63908353-63908372 | Msa0513650:intron | 35.0% | |
| ! | CAACTTGCTTTACTTGGATA+TGG | - | chr3_4:63908399-63908418 | None:intergenic | 35.0% |
| CATATCCAAGTAAAGCAAGT+TGG | + | chr3_4:63908397-63908416 | Msa0513650:intron | 35.0% | |
| TATGCAAGCATATGAGACTA+AGG | - | chr3_4:63908792-63908811 | None:intergenic | 35.0% | |
| !! | TTTTCCAGAACTTGTTCCAT+GGG | - | chr3_4:63908915-63908934 | None:intergenic | 35.0% |
| CTAGATATAAAAGCTTTCCC+CGG | + | chr3_4:63909006-63909025 | Msa0513650:intron | 35.0% | |
| TAGATATAAAAGCTTTCCCC+GGG | + | chr3_4:63909007-63909026 | Msa0513650:intron | 35.0% | |
| AGACTTCTAGATGAAAAACC+CGG | - | chr3_4:63909028-63909047 | None:intergenic | 35.0% | |
| AGTGATCAAAAGTGAGATCA+AGG | - | chr3_4:63909096-63909115 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGTTAGCATAGCCG+TGG | + | chr3_4:63909119-63909138 | Msa0513650:intron | 35.0% |
| !!! | GGAGTCTGTTTTGATAATGA+TGG | + | chr3_4:63909157-63909176 | Msa0513650:CDS | 35.0% |
| !!! | GACAGACCAGTTTTTTAAAC+AGG | - | chr3_4:63909256-63909275 | None:intergenic | 35.0% |
| TAGAACATCACTTCTGATAC+TGG | + | chr3_4:63909368-63909387 | Msa0513650:intron | 35.0% | |
| AAGACAATGGTACATTACAC+AGG | + | chr3_4:63909446-63909465 | Msa0513650:intron | 35.0% | |
| AGACAATGGTACATTACACA+GGG | + | chr3_4:63909447-63909466 | Msa0513650:intron | 35.0% | |
| ATACAGGGAAATGCATGAAT+TGG | + | chr3_4:63909626-63909645 | Msa0513650:intron | 35.0% | |
| ACAAGGAAACATGTGCATAA+CGG | - | chr3_4:63909818-63909837 | None:intergenic | 35.0% | |
| GGTAGCATACACATTAAACA+AGG | - | chr3_4:63909835-63909854 | None:intergenic | 35.0% | |
| TTAATGTGTATGCTACCCTA+AGG | + | chr3_4:63909838-63909857 | Msa0513650:intron | 35.0% | |
| ! | TAAGTGCAAGTTGAACCTTA+GGG | - | chr3_4:63909856-63909875 | None:intergenic | 35.0% |
| GGATAAAGTGAGAAATTGTC+AGG | - | chr3_4:63909879-63909898 | None:intergenic | 35.0% | |
| ATGGTAGAATTAATCTCGAG+AGG | + | chr3_4:63909946-63909965 | Msa0513650:intron | 35.0% | |
| GAAGTAATGCTCATTTACCA+TGG | - | chr3_4:63909973-63909992 | None:intergenic | 35.0% | |
| TCAGTATTGCATGTAGTTCA+AGG | + | chr3_4:63910084-63910103 | Msa0513650:intron | 35.0% | |
| ! | ACAGTGTTCCTTCATTTTGA+AGG | + | chr3_4:63910150-63910169 | Msa0513650:intron | 35.0% |
| !! | TTCCTTCATTTTGAAGGATG+TGG | + | chr3_4:63910156-63910175 | Msa0513650:intron | 35.0% |
| TTCTGTTCCATTCCATTCTT+GGG | - | chr3_4:63910374-63910393 | None:intergenic | 35.0% | |
| TTTCTGTTCCATTCCATTCT+TGG | - | chr3_4:63910375-63910394 | None:intergenic | 35.0% | |
| GAGTATTCTCTATTGTGAAG+GGG | - | chr3_4:63910453-63910472 | None:intergenic | 35.0% | |
| GAGTTGTTAATTACTTGAGG+TGG | - | chr3_4:63910552-63910571 | None:intergenic | 35.0% | |
| !!! | TGTGTTTTAGCCGTTATATG+CGG | + | chr3_4:63911671-63911690 | Msa0513650:intron | 35.0% |
| AGTCACCTGTCAAACAAATT+AGG | - | chr3_4:63911742-63911761 | None:intergenic | 35.0% | |
| ATTTGTTTGACAGGTGACTT+TGG | + | chr3_4:63911743-63911762 | Msa0513650:intron | 35.0% | |
| AATAACACAAGCCAAGAATG+AGG | + | chr3_4:63911773-63911792 | Msa0513650:CDS | 35.0% | |
| AAATACGCACATCATGAACA+AGG | - | chr3_4:63911892-63911911 | None:intergenic | 35.0% | |
| TTTCTGCAGCTTATGCGTTA+CGG | - | chr3_4:63907624-63907643 | None:intergenic | 40.0% | |
| AAAATCAATTGGTCAGTCCG+TGG | + | chr3_4:63907648-63907667 | Msa0513650:five_prime_UTR | 40.0% | |
| TCATGATATTTGGGAACGTG+AGG | - | chr3_4:63907783-63907802 | None:intergenic | 40.0% | |
| TACTCTTGTTCGAGAGAAAG+GGG | - | chr3_4:63907849-63907868 | None:intergenic | 40.0% | |
| GATACTCTTGTTCGAGAGAA+AGG | - | chr3_4:63907851-63907870 | None:intergenic | 40.0% | |
| CATTATTGACCTTCAACGTG+GGG | - | chr3_4:63907966-63907985 | None:intergenic | 40.0% | |
| CAATGATCCTCAAATAGCAG+AGG | + | chr3_4:63908100-63908119 | Msa0513650:CDS | 40.0% | |
| ! | TTGAAGCACTAACACAGAGA+CGG | - | chr3_4:63908313-63908332 | None:intergenic | 40.0% |
| CTTATTGAGGATGCATGTGT+TGG | + | chr3_4:63908352-63908371 | Msa0513650:intron | 40.0% | |
| ! | CAACACCAACTTGCTTTACT+TGG | - | chr3_4:63908405-63908424 | None:intergenic | 40.0% |
| !! | GTTTTCCAGAACTTGTTCCA+TGG | - | chr3_4:63908916-63908935 | None:intergenic | 40.0% |
| ACTTCTAGATGAAAAACCCG+GGG | - | chr3_4:63909026-63909045 | None:intergenic | 40.0% | |
| GACTTCTAGATGAAAAACCC+GGG | - | chr3_4:63909027-63909046 | None:intergenic | 40.0% | |
| !! | GCCTTTGCTATTGAGAAGTT+GGG | + | chr3_4:63909179-63909198 | Msa0513650:CDS | 40.0% |
| !! | CCTTTGCTATTGAGAAGTTG+GGG | + | chr3_4:63909180-63909199 | Msa0513650:CDS | 40.0% |
| ! | GTTGGGGATCAAAACTTTTC+AGG | + | chr3_4:63909196-63909215 | Msa0513650:CDS | 40.0% |
| CACTTCTGATACTGGATAAC+TGG | + | chr3_4:63909376-63909395 | Msa0513650:intron | 40.0% | |
| ACACAGGGAAATACATGAAC+TGG | + | chr3_4:63909462-63909481 | Msa0513650:intron | 40.0% | |
| CACAGGGAAATACATGAACT+GGG | + | chr3_4:63909463-63909482 | Msa0513650:intron | 40.0% | |
| CTGGGTCAAAATGTAACACT+CGG | + | chr3_4:63909481-63909500 | Msa0513650:intron | 40.0% | |
| CACTTCTGATACTGGATAAC+TGG | + | chr3_4:63909376-63909395 | Msa0513650:intron | 40.0% | |
| ACATGTGCATAACGGTTTAG+CGG | - | chr3_4:63909810-63909829 | None:intergenic | 40.0% | |
| ! | GTAAGTGCAAGTTGAACCTT+AGG | - | chr3_4:63909857-63909876 | None:intergenic | 40.0% |
| AATTAATCTCGAGAGGACCA+TGG | + | chr3_4:63909953-63909972 | Msa0513650:intron | 40.0% | |
| GGCACATATGCATTGTATCT+AGG | + | chr3_4:63910105-63910124 | Msa0513650:intron | 40.0% | |
| GACCACATCCTTCAAAATGA+AGG | - | chr3_4:63910161-63910180 | None:intergenic | 40.0% | |
| CTTTGTTAGGAACCCAAGAA+TGG | + | chr3_4:63910359-63910378 | Msa0513650:intron | 40.0% | |
| TTAGGAACCCAAGAATGGAA+TGG | + | chr3_4:63910364-63910383 | Msa0513650:intron | 40.0% | |
| TATTGTGAAGGGGAAACTCT+TGG | - | chr3_4:63910443-63910462 | None:intergenic | 40.0% | |
| CAAGAGACTGTTAGGAACTT+AGG | - | chr3_4:63910615-63910634 | None:intergenic | 40.0% | |
| ACTTGAAGCAAGAGACTGTT+AGG | - | chr3_4:63910623-63910642 | None:intergenic | 40.0% | |
| TAACAGTCTCTTGCTTCAAG+TGG | + | chr3_4:63910622-63910641 | Msa0513650:intron | 40.0% | |
| ! | TAGCTTGTCGATTGATGTAG+AGG | + | chr3_4:63910681-63910700 | Msa0513650:intron | 40.0% |
| AATCCACAAGCTATGTCAAC+AGG | - | chr3_4:63910996-63911015 | None:intergenic | 40.0% | |
| ! | ATAGCTTGTGGATTTGATGC+AGG | + | chr3_4:63911002-63911021 | Msa0513650:intron | 40.0% |
| ! | TAGCTTGTGGATTTGATGCA+GGG | + | chr3_4:63911003-63911022 | Msa0513650:intron | 40.0% |
| GGTAATACTGGTCCCTTACA+TGG | + | chr3_4:63907755-63907774 | Msa0513650:CDS | 45.0% | |
| GAACGTGAGGTTCCATGTAA+GGG | - | chr3_4:63907770-63907789 | None:intergenic | 45.0% | |
| CAGTGGCTTGAAGTAGAGAA+GGG | - | chr3_4:63907818-63907837 | None:intergenic | 45.0% | |
| TTGTTCGAGAGAAAGGGGTT+CGG | - | chr3_4:63907844-63907863 | None:intergenic | 45.0% | |
| AGTATCAGATGCAACTCTCC+TGG | + | chr3_4:63907865-63907884 | Msa0513650:CDS | 45.0% | |
| CTTCTTGGAACCTTCTCTCA+TGG | + | chr3_4:63907936-63907955 | Msa0513650:CDS | 45.0% | |
| CCAACCATAGCTGCAAATAG+CGG | - | chr3_4:63908053-63908072 | None:intergenic | 45.0% | |
| ATTGAAGGCCTGTCTAGTGT+CGG | + | chr3_4:63908196-63908215 | Msa0513650:intron | 45.0% | |
| TAAACCATTCCACAGACCCA+TGG | + | chr3_4:63908896-63908915 | Msa0513650:intron | 45.0% | |
| !! | GGCCTTTGCTATTGAGAAGT+TGG | + | chr3_4:63909178-63909197 | Msa0513650:CDS | 45.0% |
| CCCCAACTTCTCAATAGCAA+AGG | - | chr3_4:63909183-63909202 | None:intergenic | 45.0% | |
| ACCACTTGAGAAGAGAGAGA+GGG | - | chr3_4:63910953-63910972 | None:intergenic | 45.0% | |
| AACCACTTGAGAAGAGAGAG+AGG | - | chr3_4:63910954-63910973 | None:intergenic | 45.0% | |
| TCTCCTGTTGACATAGCTTG+TGG | + | chr3_4:63910990-63911009 | Msa0513650:intron | 45.0% | |
| AGCTTGTGGATTTGATGCAG+GGG | + | chr3_4:63911004-63911023 | Msa0513650:intron | 45.0% | |
| ACCAAGCATCTCCTCATTCT+TGG | - | chr3_4:63911787-63911806 | None:intergenic | 45.0% | |
| ! | TGAGGAGATGCTTGGTTTGA+TGG | + | chr3_4:63911791-63911810 | Msa0513650:CDS | 45.0% |
| ! | GAGGAGATGCTTGGTTTGAT+GGG | + | chr3_4:63911792-63911811 | Msa0513650:CDS | 45.0% |
| CGTGTGAACCCATCTTAACA+AGG | - | chr3_4:63912040-63912059 | None:intergenic | 45.0% | |
| GGAACGTGAGGTTCCATGTA+AGG | - | chr3_4:63907771-63907790 | None:intergenic | 50.0% | |
| GCAGTGGCTTGAAGTAGAGA+AGG | - | chr3_4:63907819-63907838 | None:intergenic | 50.0% | |
| CTTGTTGAGATCACGTGACC+AGG | - | chr3_4:63907886-63907905 | None:intergenic | 50.0% | |
| CTGGTCACGTGATCTCAACA+AGG | + | chr3_4:63907884-63907903 | Msa0513650:CDS | 50.0% | |
| ! | TGTGCCGCTATTTGCAGCTA+TGG | + | chr3_4:63908046-63908065 | Msa0513650:intron | 50.0% |
| CCGCTATTTGCAGCTATGGT+TGG | + | chr3_4:63908050-63908069 | Msa0513650:intron | 50.0% | |
| TTGAAGGCCTGTCTAGTGTC+GGG | + | chr3_4:63908197-63908216 | Msa0513650:intron | 50.0% | |
| TGTTCCATGGGTCTGTGGAA+TGG | - | chr3_4:63908903-63908922 | None:intergenic | 50.0% | |
| ! | GAACTTGTTCCATGGGTCTG+TGG | - | chr3_4:63908908-63908927 | None:intergenic | 50.0% |
| CAGACCCATGGAACAAGTTC+TGG | + | chr3_4:63908908-63908927 | Msa0513650:intron | 50.0% | |
| TGTTAGCATAGCCGTGGCAA+AGG | + | chr3_4:63909125-63909144 | Msa0513650:intron | 50.0% | |
| CCTTTCCAAGTCCTTTGCCA+CGG | - | chr3_4:63909139-63909158 | None:intergenic | 50.0% | |
| TGTGAAGGGGAAACTCTTGG+AGG | - | chr3_4:63910440-63910459 | None:intergenic | 50.0% | |
| TCCCTCTCTCTCTTCTCAAG+TGG | + | chr3_4:63910949-63910968 | Msa0513650:intron | 50.0% | |
| GCCAAGAATGAGGAGATGCT+TGG | + | chr3_4:63911783-63911802 | Msa0513650:CDS | 50.0% | |
| AGAAAGGGGTTCGGAAGCAG+TGG | - | chr3_4:63907835-63907854 | None:intergenic | 55.0% | |
| GTGGGGTTGACCATGAGAGA+AGG | - | chr3_4:63907949-63907968 | None:intergenic | 55.0% | |
| CATGGTCAACCCCACGTTGA+AGG | + | chr3_4:63907954-63907973 | Msa0513650:CDS | 55.0% | |
| TCACATGCCCGACACTAGAC+AGG | - | chr3_4:63908207-63908226 | None:intergenic | 55.0% | |
| ! | TAGTGTCGGGCATGTGACAC+CGG | + | chr3_4:63908210-63908229 | Msa0513650:intron | 55.0% |
| CATAGCCGTGGCAAAGGACT+TGG | + | chr3_4:63909131-63909150 | Msa0513650:CDS | 55.0% | |
| CCGTGGCAAAGGACTTGGAA+AGG | + | chr3_4:63909136-63909155 | Msa0513650:CDS | 55.0% | |
| GCTGCGCTTTGCTCTTGCCA+CGG | - | chr3_4:63907668-63907687 | None:intergenic | 60.0% | |
| GTGGCAAGAGCAAAGCGCAG+CGG | + | chr3_4:63907667-63907686 | Msa0513650:five_prime_UTR | 60.0% | |
| GCAAGAGCAAAGCGCAGCGG+CGG | + | chr3_4:63907670-63907689 | Msa0513650:five_prime_UTR | 65.0% | |
| AGCGCAGCGGCGGAGTTCGA+TGG | + | chr3_4:63907680-63907699 | Msa0513650:exon | 70.0% | |
| GCAGCGGCGGAGTTCGATGG+CGG | + | chr3_4:63907683-63907702 | Msa0513650:exon | 70.0% | |
| ! | GCGGCGGAGTTCGATGGCGG+CGG | + | chr3_4:63907686-63907705 | Msa0513650:exon | 75.0% |
| ! | GCGGAGTTCGATGGCGGCGG+CGG | + | chr3_4:63907689-63907708 | Msa0513650:exon | 75.0% |
| ! | GAGTTCGATGGCGGCGGCGG+CGG | + | chr3_4:63907692-63907711 | Msa0513650:exon | 75.0% |
| GCGGCGGCGGCGAGGAAGAA+AGG | + | chr3_4:63907708-63907727 | Msa0513650:CDS | 75.0% | |
| !! | TTCGATGGCGGCGGCGGCGG+CGG | + | chr3_4:63907695-63907714 | Msa0513650:exon | 80.0% |
| ! | TGGCGGCGGCGGCGGCGGCG+AGG | + | chr3_4:63907700-63907719 | Msa0513650:CDS | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 63907607 | 63912066 | 63907607 | ID=Msa0513650;Name=Msa0513650 |
| chr3_4 | mRNA | 63907607 | 63912066 | 63907607 | ID=Msa0513650-mRNA-1;Parent=Msa0513650;Name=Msa0513650-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|0.5|0.6|1|1|1|5|230|180 |
| chr3_4 | exon | 63907607 | 63907975 | 63907607 | ID=Msa0513650-mRNA-1:exon:16056;Parent=Msa0513650-mRNA-1 |
| chr3_4 | exon | 63908063 | 63908121 | 63908063 | ID=Msa0513650-mRNA-1:exon:16057;Parent=Msa0513650-mRNA-1 |
| chr3_4 | exon | 63909131 | 63909217 | 63909131 | ID=Msa0513650-mRNA-1:exon:16058;Parent=Msa0513650-mRNA-1 |
| chr3_4 | exon | 63911024 | 63911062 | 63911024 | ID=Msa0513650-mRNA-1:exon:16059;Parent=Msa0513650-mRNA-1 |
| chr3_4 | exon | 63911756 | 63912066 | 63911756 | ID=Msa0513650-mRNA-1:exon:16060;Parent=Msa0513650-mRNA-1 |
| chr3_4 | five_prime_UTR | 63907607 | 63907698 | 63907607 | ID=Msa0513650-mRNA-1:five_prime_utr;Parent=Msa0513650-mRNA-1 |
| chr3_4 | CDS | 63907699 | 63907975 | 63907699 | ID=Msa0513650-mRNA-1:cds;Parent=Msa0513650-mRNA-1 |
| chr3_4 | CDS | 63908063 | 63908121 | 63908063 | ID=Msa0513650-mRNA-1:cds;Parent=Msa0513650-mRNA-1 |
| chr3_4 | CDS | 63909131 | 63909217 | 63909131 | ID=Msa0513650-mRNA-1:cds;Parent=Msa0513650-mRNA-1 |
| chr3_4 | CDS | 63911024 | 63911062 | 63911024 | ID=Msa0513650-mRNA-1:cds;Parent=Msa0513650-mRNA-1 |
| chr3_4 | CDS | 63911756 | 63911836 | 63911756 | ID=Msa0513650-mRNA-1:cds;Parent=Msa0513650-mRNA-1 |
| chr3_4 | three_prime_UTR | 63911837 | 63912066 | 63911837 | ID=Msa0513650-mRNA-1:three_prime_utr;Parent=Msa0513650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
