AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0298990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298990 MtrunA17_Chr2g0285451 100.000 69 0 0 37 105 1 69 1.58e-44 138
Msa0298990 MtrunA17_Chr4g0033761 94.203 69 4 0 37 105 1 69 4.16e-42 132
Msa0298990 MtrunA17_Chr8g0376751 89.855 69 7 0 37 105 1 69 1.03e-39 126
Msa0298990 MtrunA17_Chr7g0216191 86.957 69 9 0 37 105 1 69 8.16e-37 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298990 AT2G43460.1 91.304 69 6 0 37 105 1 69 1.20e-40 129
Msa0298990 AT3G59540.1 91.304 69 6 0 37 105 1 69 1.20e-40 129

Find 39 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACGAAAACGTTTAGGATT+AGG 0.264287 2_3:+53319511 Msa0298990:CDS
TTCTCTCCATTTCATCCATT+TGG 0.273233 2_3:-53321501 None:intergenic
TAAGCAAATCAACGAGATTA+AGG 0.294566 2_3:+53320613 Msa0298990:CDS
TTCAAGACCTTTAGAGGTAT+TGG 0.299687 2_3:+53321354 Msa0298990:exon
TTTGTTTCTGTGATAAGTTT+TGG 0.304054 2_3:+53321677 Msa0298990:three_prime_UTR
ATCTCTCCAAATGGATGAAA+TGG 0.308166 2_3:+53321495 Msa0298990:three_prime_UTR
TACGAAAACGTTTAGGATTA+GGG 0.309907 2_3:+53319512 Msa0298990:CDS
TGAGTGTTCAAGACCTTTAG+AGG 0.372905 2_3:+53321348 Msa0298990:CDS
AAAGAACTACGAAAACGTTT+AGG 0.375594 2_3:+53319505 Msa0298990:CDS
TGACCTCGCATCCTTCCTTC+TGG 0.376233 2_3:-53320651 None:intergenic
TTGAGATTGTAGCCAGGAAA+TGG 0.416064 2_3:+53321559 Msa0298990:three_prime_UTR
TGGAGAGATATAGATCCATT+TGG 0.428839 2_3:-53321481 None:intergenic
TGGATCTATATCTCTCCAAA+TGG 0.457727 2_3:+53321486 Msa0298990:three_prime_UTR
TTCTCATCCAATACCTCTAA+AGG 0.468641 2_3:-53321361 None:intergenic
CTCACTGCCTCTTGCAACAA+TGG 0.469145 2_3:+53319572 Msa0298990:CDS
GAGTTAAGATCCTCTCCATT+TGG 0.475407 2_3:-53321526 None:intergenic
AGTGAGAATCAAGAGGAGTA+AGG 0.485084 2_3:+53320673 Msa0298990:CDS
AGGTATTGGATGAGAAATCA+AGG 0.495732 2_3:+53321368 Msa0298990:three_prime_UTR
TAAGGATGTGGTTAAGTTCA+AGG 0.499148 2_3:+53320691 Msa0298990:CDS
AAGGGTAAAGATCCTCCAAA+TGG 0.506011 2_3:+53321466 Msa0298990:three_prime_UTR
GAAATGGAGAGAATACCAAA+TGG 0.517514 2_3:+53321511 Msa0298990:three_prime_UTR
ATGTGGTTAAGTTCAAGGTC+AGG 0.518401 2_3:+53320696 Msa0298990:CDS
AATCAAGAGGAGTAAGGATG+TGG 0.526249 2_3:+53320679 Msa0298990:CDS
ACTAAGTGTGTAGAGGTACT+TGG 0.532503 2_3:-53320723 None:intergenic
TTAATCTCGTTGATTTGCTT+AGG 0.534022 2_3:-53320611 None:intergenic
CCTTCTCACTGCCAGAAGGA+AGG 0.537276 2_3:+53320640 Msa0298990:CDS
TTGAAGCAATCACTTCCTCC+AGG 0.552717 2_3:+53320773 Msa0298990:CDS
AGAGATATAGATCCATTTGG+AGG 0.564353 2_3:-53321478 None:intergenic
CCTTCCTTCTGGCAGTGAGA+AGG 0.565796 2_3:-53320640 None:intergenic
TTTGTGAGTTGATCTTGTAA+GGG 0.574402 2_3:+53321448 Msa0298990:three_prime_UTR
AAAATCACCATTGTTGCAAG+AGG 0.583889 2_3:-53319579 None:intergenic
ATTTCCTTCTCACTGCCAGA+AGG 0.584170 2_3:+53320636 Msa0298990:CDS
TGTAACTTGAGATTGTAGCC+AGG 0.592891 2_3:+53321553 Msa0298990:three_prime_UTR
CGAGGTCAGTGAGAATCAAG+AGG 0.618562 2_3:+53320666 Msa0298990:CDS
GGAGAGAATACCAAATGGAG+AGG 0.623091 2_3:+53321516 Msa0298990:three_prime_UTR
CTGCCAGAAGGAAGGATGCG+AGG 0.654921 2_3:+53320648 Msa0298990:CDS
CAAACACACTAAGTGTGTAG+AGG 0.657075 2_3:-53320730 None:intergenic
TTGGATGAGAAATCAAGGAG+AGG 0.695988 2_3:+53321373 Msa0298990:three_prime_UTR
TTAGGATTAGGGTTTATCAG+CGG 0.714795 2_3:+53319523 Msa0298990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAAAAAATAAAAT+GGG - chr2_3:53319741-53319760 None:intergenic 0.0%
!! AAATTAATAAAAAAATAAAA+TGG - chr2_3:53319742-53319761 None:intergenic 0.0%
!! AATTAATAAAAAAATAAAAT+GGG - chr2_3:53319741-53319760 None:intergenic 0.0%
!! AAATTAATAAAAAAATAAAA+TGG - chr2_3:53319742-53319761 None:intergenic 0.0%
!! AATTGAGAAATTAGAAAAAA+GGG - chr2_3:53319614-53319633 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG + chr2_3:53319679-53319698 Msa0298990:intron 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG + chr2_3:53319783-53319802 Msa0298990:intron 15.0%
!! AACAATAACAAACAAAAATT+TGG - chr2_3:53320516-53320535 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG + chr2_3:53320821-53320840 Msa0298990:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG + chr2_3:53321008-53321027 Msa0298990:intron 15.0%
!! AATTGAGAAATTAGAAAAAA+GGG - chr2_3:53319614-53319633 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG + chr2_3:53319679-53319698 Msa0298990:intron 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG + chr2_3:53319783-53319802 Msa0298990:intron 15.0%
!! AACAATAACAAACAAAAATT+TGG - chr2_3:53320516-53320535 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG + chr2_3:53320821-53320840 Msa0298990:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG + chr2_3:53321008-53321027 Msa0298990:intron 15.0%
!! ATTGAGAAATTAGAAAAAAG+GGG - chr2_3:53319613-53319632 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG - chr2_3:53319615-53319634 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG + chr2_3:53319886-53319905 Msa0298990:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG + chr2_3:53319887-53319906 Msa0298990:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG + chr2_3:53319935-53319954 Msa0298990:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG + chr2_3:53320291-53320310 Msa0298990:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG + chr2_3:53320860-53320879 Msa0298990:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG - chr2_3:53321169-53321188 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG - chr2_3:53321179-53321198 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG + chr2_3:53321235-53321254 Msa0298990:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG - chr2_3:53321240-53321259 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG - chr2_3:53321271-53321290 None:intergenic 20.0%
!! ATTGAGAAATTAGAAAAAAG+GGG - chr2_3:53319613-53319632 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG - chr2_3:53319615-53319634 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG + chr2_3:53319886-53319905 Msa0298990:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG + chr2_3:53319887-53319906 Msa0298990:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG + chr2_3:53319935-53319954 Msa0298990:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG + chr2_3:53320291-53320310 Msa0298990:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG + chr2_3:53320860-53320879 Msa0298990:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG - chr2_3:53321169-53321188 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG - chr2_3:53321179-53321198 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG + chr2_3:53321235-53321254 Msa0298990:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG - chr2_3:53321240-53321259 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG - chr2_3:53321271-53321290 None:intergenic 20.0%
! TTGAGAAATTAGAAAAAAGG+GGG - chr2_3:53319612-53319631 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG + chr2_3:53320251-53320270 Msa0298990:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG - chr2_3:53320293-53320312 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG + chr2_3:53320290-53320309 Msa0298990:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG - chr2_3:53320886-53320905 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG - chr2_3:53320887-53320906 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG + chr2_3:53321135-53321154 Msa0298990:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG - chr2_3:53321272-53321291 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG - chr2_3:53321282-53321301 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG + chr2_3:53321595-53321614 Msa0298990:three_prime_UTR 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG + chr2_3:53321614-53321633 Msa0298990:three_prime_UTR 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG + chr2_3:53321677-53321696 Msa0298990:three_prime_UTR 25.0%
! TTGAGAAATTAGAAAAAAGG+GGG - chr2_3:53319612-53319631 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG + chr2_3:53320251-53320270 Msa0298990:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG - chr2_3:53320293-53320312 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG + chr2_3:53320290-53320309 Msa0298990:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG - chr2_3:53320886-53320905 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG - chr2_3:53320887-53320906 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG + chr2_3:53321135-53321154 Msa0298990:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG - chr2_3:53321272-53321291 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG - chr2_3:53321282-53321301 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG + chr2_3:53321595-53321614 Msa0298990:three_prime_UTR 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG + chr2_3:53321614-53321633 Msa0298990:three_prime_UTR 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG + chr2_3:53321677-53321696 Msa0298990:three_prime_UTR 25.0%
AAAGAACTACGAAAACGTTT+AGG + chr2_3:53319505-53319524 Msa0298990:CDS 30.0%
! TACGAAAACGTTTAGGATTA+GGG + chr2_3:53319512-53319531 Msa0298990:CDS 30.0%
AAAAATAAGCCAATCGAAAC+GGG - chr2_3:53319962-53319981 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG - chr2_3:53319963-53319982 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG + chr2_3:53320138-53320157 Msa0298990:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG - chr2_3:53320155-53320174 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG + chr2_3:53320153-53320172 Msa0298990:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG - chr2_3:53320353-53320372 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG - chr2_3:53320387-53320406 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG - chr2_3:53320388-53320407 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG - chr2_3:53320614-53320633 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG + chr2_3:53320613-53320632 Msa0298990:CDS 30.0%
AATTGAACTAGTTGAACTGT+TGG - chr2_3:53320850-53320869 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG - chr2_3:53321124-53321143 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG - chr2_3:53321136-53321155 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG - chr2_3:53321161-53321180 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG - chr2_3:53321162-53321181 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG + chr2_3:53321192-53321211 Msa0298990:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG + chr2_3:53321222-53321241 Msa0298990:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG + chr2_3:53321447-53321466 Msa0298990:three_prime_UTR 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG + chr2_3:53321448-53321467 Msa0298990:three_prime_UTR 30.0%
TCATTACAAAAACCATTTCC+TGG - chr2_3:53321574-53321593 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG + chr2_3:53321613-53321632 Msa0298990:three_prime_UTR 30.0%
AAAGAACTACGAAAACGTTT+AGG + chr2_3:53319505-53319524 Msa0298990:CDS 30.0%
! TACGAAAACGTTTAGGATTA+GGG + chr2_3:53319512-53319531 Msa0298990:CDS 30.0%
AAAAATAAGCCAATCGAAAC+GGG - chr2_3:53319962-53319981 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG - chr2_3:53319963-53319982 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG + chr2_3:53320138-53320157 Msa0298990:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG - chr2_3:53320155-53320174 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG + chr2_3:53320153-53320172 Msa0298990:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG - chr2_3:53320353-53320372 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG - chr2_3:53320387-53320406 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG - chr2_3:53320388-53320407 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG - chr2_3:53320614-53320633 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG + chr2_3:53320613-53320632 Msa0298990:CDS 30.0%
AATTGAACTAGTTGAACTGT+TGG - chr2_3:53320850-53320869 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG - chr2_3:53321124-53321143 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG - chr2_3:53321136-53321155 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG - chr2_3:53321161-53321180 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG - chr2_3:53321162-53321181 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG + chr2_3:53321192-53321211 Msa0298990:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG + chr2_3:53321222-53321241 Msa0298990:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG + chr2_3:53321447-53321466 Msa0298990:three_prime_UTR 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG + chr2_3:53321448-53321467 Msa0298990:three_prime_UTR 30.0%
TCATTACAAAAACCATTTCC+TGG - chr2_3:53321574-53321593 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG + chr2_3:53321613-53321632 Msa0298990:three_prime_UTR 30.0%
! CTACGAAAACGTTTAGGATT+AGG + chr2_3:53319511-53319530 Msa0298990:CDS 35.0%
TTAGGATTAGGGTTTATCAG+CGG + chr2_3:53319523-53319542 Msa0298990:CDS 35.0%
AAAATCACCATTGTTGCAAG+AGG - chr2_3:53319582-53319601 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG + chr2_3:53319820-53319839 Msa0298990:intron 35.0%
TTATTCGATGCTAAGAAGCT+GGG + chr2_3:53319821-53319840 Msa0298990:intron 35.0%
TAAGGATGTGGTTAAGTTCA+AGG + chr2_3:53320691-53320710 Msa0298990:CDS 35.0%
TAAACACTTGTGAGACTGTT+TGG - chr2_3:53321099-53321118 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG + chr2_3:53321323-53321342 Msa0298990:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG + chr2_3:53321354-53321373 Msa0298990:exon 35.0%
TTCTCATCCAATACCTCTAA+AGG - chr2_3:53321364-53321383 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG + chr2_3:53321368-53321387 Msa0298990:three_prime_UTR 35.0%
AGAGATATAGATCCATTTGG+AGG - chr2_3:53321481-53321500 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG - chr2_3:53321484-53321503 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG + chr2_3:53321486-53321505 Msa0298990:three_prime_UTR 35.0%
ATCTCTCCAAATGGATGAAA+TGG + chr2_3:53321495-53321514 Msa0298990:three_prime_UTR 35.0%
TTCTCTCCATTTCATCCATT+TGG - chr2_3:53321504-53321523 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG + chr2_3:53321511-53321530 Msa0298990:three_prime_UTR 35.0%
! CTACGAAAACGTTTAGGATT+AGG + chr2_3:53319511-53319530 Msa0298990:CDS 35.0%
TTAGGATTAGGGTTTATCAG+CGG + chr2_3:53319523-53319542 Msa0298990:CDS 35.0%
AAAATCACCATTGTTGCAAG+AGG - chr2_3:53319582-53319601 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG + chr2_3:53319820-53319839 Msa0298990:intron 35.0%
TTATTCGATGCTAAGAAGCT+GGG + chr2_3:53319821-53319840 Msa0298990:intron 35.0%
TAAGGATGTGGTTAAGTTCA+AGG + chr2_3:53320691-53320710 Msa0298990:CDS 35.0%
TAAACACTTGTGAGACTGTT+TGG - chr2_3:53321099-53321118 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG + chr2_3:53321323-53321342 Msa0298990:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG + chr2_3:53321354-53321373 Msa0298990:exon 35.0%
TTCTCATCCAATACCTCTAA+AGG - chr2_3:53321364-53321383 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG + chr2_3:53321368-53321387 Msa0298990:three_prime_UTR 35.0%
AGAGATATAGATCCATTTGG+AGG - chr2_3:53321481-53321500 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG - chr2_3:53321484-53321503 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG + chr2_3:53321486-53321505 Msa0298990:three_prime_UTR 35.0%
ATCTCTCCAAATGGATGAAA+TGG + chr2_3:53321495-53321514 Msa0298990:three_prime_UTR 35.0%
TTCTCTCCATTTCATCCATT+TGG - chr2_3:53321504-53321523 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG + chr2_3:53321511-53321530 Msa0298990:three_prime_UTR 35.0%
CTAAGAAGCTGGGTTAAGTT+AGG + chr2_3:53319831-53319850 Msa0298990:intron 40.0%
AGTGAGAATCAAGAGGAGTA+AGG + chr2_3:53320673-53320692 Msa0298990:CDS 40.0%
AATCAAGAGGAGTAAGGATG+TGG + chr2_3:53320679-53320698 Msa0298990:CDS 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG + chr2_3:53320696-53320715 Msa0298990:CDS 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG - chr2_3:53320726-53320745 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG - chr2_3:53320733-53320752 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG - chr2_3:53320794-53320813 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG - chr2_3:53320841-53320860 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG + chr2_3:53321348-53321367 Msa0298990:CDS 40.0%
TTGGATGAGAAATCAAGGAG+AGG + chr2_3:53321373-53321392 Msa0298990:three_prime_UTR 40.0%
AAGGGTAAAGATCCTCCAAA+TGG + chr2_3:53321466-53321485 Msa0298990:three_prime_UTR 40.0%
GAGTTAAGATCCTCTCCATT+TGG - chr2_3:53321529-53321548 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG + chr2_3:53321553-53321572 Msa0298990:three_prime_UTR 40.0%
TTGAGATTGTAGCCAGGAAA+TGG + chr2_3:53321559-53321578 Msa0298990:three_prime_UTR 40.0%
CTAAGAAGCTGGGTTAAGTT+AGG + chr2_3:53319831-53319850 Msa0298990:intron 40.0%
AGTGAGAATCAAGAGGAGTA+AGG + chr2_3:53320673-53320692 Msa0298990:CDS 40.0%
AATCAAGAGGAGTAAGGATG+TGG + chr2_3:53320679-53320698 Msa0298990:CDS 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG + chr2_3:53320696-53320715 Msa0298990:CDS 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG - chr2_3:53320726-53320745 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG - chr2_3:53320733-53320752 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG - chr2_3:53320794-53320813 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG - chr2_3:53320841-53320860 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG + chr2_3:53321348-53321367 Msa0298990:CDS 40.0%
TTGGATGAGAAATCAAGGAG+AGG + chr2_3:53321373-53321392 Msa0298990:three_prime_UTR 40.0%
AAGGGTAAAGATCCTCCAAA+TGG + chr2_3:53321466-53321485 Msa0298990:three_prime_UTR 40.0%
GAGTTAAGATCCTCTCCATT+TGG - chr2_3:53321529-53321548 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG + chr2_3:53321553-53321572 Msa0298990:three_prime_UTR 40.0%
TTGAGATTGTAGCCAGGAAA+TGG + chr2_3:53321559-53321578 Msa0298990:three_prime_UTR 40.0%
! GATTTAGGACCCGTTTCGAT+TGG + chr2_3:53319950-53319969 Msa0298990:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG + chr2_3:53320371-53320390 Msa0298990:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG + chr2_3:53320636-53320655 Msa0298990:CDS 45.0%
TTGAAGCAATCACTTCCTCC+AGG + chr2_3:53320773-53320792 Msa0298990:CDS 45.0%
AAATCCAACTACAGACCTGG+AGG - chr2_3:53320791-53320810 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG - chr2_3:53321157-53321176 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG + chr2_3:53321516-53321535 Msa0298990:three_prime_UTR 45.0%
! GATTTAGGACCCGTTTCGAT+TGG + chr2_3:53319950-53319969 Msa0298990:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG + chr2_3:53320371-53320390 Msa0298990:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG + chr2_3:53320636-53320655 Msa0298990:CDS 45.0%
TTGAAGCAATCACTTCCTCC+AGG + chr2_3:53320773-53320792 Msa0298990:CDS 45.0%
AAATCCAACTACAGACCTGG+AGG - chr2_3:53320791-53320810 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG - chr2_3:53321157-53321176 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG + chr2_3:53321516-53321535 Msa0298990:three_prime_UTR 45.0%
CTCACTGCCTCTTGCAACAA+TGG + chr2_3:53319572-53319591 Msa0298990:CDS 50.0%
CGAGGTCAGTGAGAATCAAG+AGG + chr2_3:53320666-53320685 Msa0298990:CDS 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG + chr2_3:53320784-53320803 Msa0298990:intron 50.0%
CTCACTGCCTCTTGCAACAA+TGG + chr2_3:53319572-53319591 Msa0298990:CDS 50.0%
CGAGGTCAGTGAGAATCAAG+AGG + chr2_3:53320666-53320685 Msa0298990:CDS 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG + chr2_3:53320784-53320803 Msa0298990:intron 50.0%
CCTTCCTTCTGGCAGTGAGA+AGG - chr2_3:53320643-53320662 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG + chr2_3:53320640-53320659 Msa0298990:CDS 55.0%
TGACCTCGCATCCTTCCTTC+TGG - chr2_3:53320654-53320673 None:intergenic 55.0%
CCTTCCTTCTGGCAGTGAGA+AGG - chr2_3:53320643-53320662 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG + chr2_3:53320640-53320659 Msa0298990:CDS 55.0%
TGACCTCGCATCCTTCCTTC+TGG - chr2_3:53320654-53320673 None:intergenic 55.0%
CTGCCAGAAGGAAGGATGCG+AGG + chr2_3:53320648-53320667 Msa0298990:CDS 60.0%
CTGCCAGAAGGAAGGATGCG+AGG + chr2_3:53320648-53320667 Msa0298990:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 53319483 53321733 53319483 ID=Msa0298990;Name=Msa0298990
chr2_3 mRNA 53319483 53321733 53319483 ID=Msa0298990-mRNA-1;Parent=Msa0298990;Name=Msa0298990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.66|1|1|1|3|366|105
chr2_3 exon 53319483 53319593 53319483 ID=Msa0298990-mRNA-1:exon:17116;Parent=Msa0298990-mRNA-1
chr2_3 exon 53320611 53320794 53320611 ID=Msa0298990-mRNA-1:exon:17117;Parent=Msa0298990-mRNA-1
chr2_3 exon 53321345 53321733 53321345 ID=Msa0298990-mRNA-1:exon:17118;Parent=Msa0298990-mRNA-1
chr2_3 CDS 53319483 53319593 53319483 ID=Msa0298990-mRNA-1:cds;Parent=Msa0298990-mRNA-1
chr2_3 CDS 53320611 53320794 53320611 ID=Msa0298990-mRNA-1:cds;Parent=Msa0298990-mRNA-1
chr2_3 CDS 53321345 53321367 53321345 ID=Msa0298990-mRNA-1:cds;Parent=Msa0298990-mRNA-1
chr2_3 three_prime_UTR 53321368 53321733 53321368 ID=Msa0298990-mRNA-1:three_prime_utr;Parent=Msa0298990-mRNA-1
Gene Sequence

>Msa0298990

ATGGGTATTTTTCGGGGAAATCAAAGAACTACGAAAACGTTTAGGATTAGGGTTTATCAGCGGCAGCAACATTTCACACTTCGTTCGAACTCACTGCCTCTTGCAACAATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACTGCCAGAAGGAAGGATGCGAGGTCAGTGAGAATCAAGAGGAGTAAGGATGTGGTTAAGTTCAAGGTCAGGTGTTCCAAGTACCTCTACACACTTAGTGTGTTTGACGTTGAGAAAGCTGACAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTTTAG

Protein sequence

>Msa0298990

MGIFRGNQRTTKTFRIRVYQRQQHFTLRSNSLPLATMPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLSVFDVEKADKLKQSLPPGLSVQDL*