AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1307950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307950 MtrunA17_Chr8g0334441 100.000 64 0 0 1 64 1 64 1.31e-43 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307950 AT3G08610.1 75.000 64 16 0 1 64 1 64 2.50e-33 108

Find 46 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATAAATCTTGGTATTTA+TGG 0.074576 8_4:+4034015 Msa1307950:three_prime_UTR
AGTTGGGCTGGGCTTATATA+TGG 0.259704 8_4:+4032082 None:intergenic
TAGGGTACCTGTTTGTTAAT+TGG 0.273208 8_4:-4032478 None:intergenic
CAGGGATTCATTTAAAATAA+AGG 0.278340 8_4:-4034082 None:intergenic
ACATAAATCTTGGTATTTAT+GGG 0.302254 8_4:+4034016 Msa1307950:three_prime_UTR
TGCTGGAATGCTTTGTGTTA+TGG 0.308874 8_4:+4032246 Msa1307950:CDS
GCTGGAATGCTTTGTGTTAT+GGG 0.333642 8_4:+4032247 Msa1307950:CDS
TTACCTTTGGGAATAATTGC+TGG 0.341296 8_4:+4032229 Msa1307950:CDS
GTTGGAAGCTATGTTACCTT+TGG 0.352532 8_4:+4032216 Msa1307950:CDS
AATCGATAATTTATGTAAGT+TGG 0.365119 8_4:+4034153 Msa1307950:three_prime_UTR
AAGGCAAGGATTGGGATTAC+AGG 0.380141 8_4:-4034063 None:intergenic
AAGAAAGAAAGAAAGAAAGA+AGG 0.384033 8_4:+4032153 Msa1307950:five_prime_UTR
TTTAAAATAAAGGCAAGGAT+TGG 0.393599 8_4:-4034072 None:intergenic
TTGTGCTTTGACATAAATCT+TGG 0.394534 8_4:+4034006 Msa1307950:three_prime_UTR
TTGGAAGCTATGTTACCTTT+GGG 0.406774 8_4:+4032217 Msa1307950:CDS
AGAAAGAAAGAAAGAAAGAA+GGG 0.406986 8_4:+4032154 Msa1307950:five_prime_UTR
CTCTGCTTCCATGGAACAGC+TGG 0.418718 8_4:-4033809 None:intergenic
ATCGATAATTTATGTAAGTT+GGG 0.419344 8_4:+4034154 Msa1307950:three_prime_UTR
TTAAAATAAAGGCAAGGATT+GGG 0.421257 8_4:-4034071 None:intergenic
TCTTCTTCCAATTAACAAAC+AGG 0.422157 8_4:+4032471 Msa1307950:exon
CTTCTTGTCCCTACGTTCCA+TGG 0.446698 8_4:-4032433 None:intergenic
TGCTTAGTGAAGGTGTGGAC+AGG 0.462427 8_4:-4034101 None:intergenic
TATGAATATTATAACGCTTA+GGG 0.471375 8_4:-4033879 None:intergenic
AAATCATTGCCGATGTGCTT+AGG 0.473520 8_4:-4032399 None:intergenic
ATATGAATATTATAACGCTT+AGG 0.483482 8_4:-4033880 None:intergenic
AGCACATCGGCAATGATTTG+TGG 0.486432 8_4:+4032403 Msa1307950:CDS
AGAGATGGCGTTGCATTGGT+TGG 0.487344 8_4:+4032198 Msa1307950:exon
AGAGAGAGATGGCGTTGCAT+TGG 0.502767 8_4:+4032194 Msa1307950:exon
GCACATCGGCAATGATTTGT+GGG 0.508503 8_4:+4032404 Msa1307950:CDS
AGCAATCTACTCTGCTTCCA+TGG 0.524941 8_4:-4033818 None:intergenic
CGGCAATGATTTGTGGGACG+TGG 0.531999 8_4:+4032410 Msa1307950:CDS
GAAGAAGAGAAAGAGAGAGA+TGG 0.542617 8_4:+4032183 Msa1307950:exon
GTTGCTCTCCAGCTGTTCCA+TGG 0.544090 8_4:+4033801 Msa1307950:three_prime_UTR
TGATTTGTGGGACGTGGCCA+TGG 0.553811 8_4:+4032416 Msa1307950:CDS
ATTCATTTAAAATAAAGGCA+AGG 0.569026 8_4:-4034077 None:intergenic
GGACGTGGCCATGGAACGTA+GGG 0.570234 8_4:+4032425 Msa1307950:CDS
ACATAAATTATCGATTGCCA+TGG 0.587402 8_4:-4034146 None:intergenic
ATTCCAGCAATTATTCCCAA+AGG 0.601922 8_4:-4032232 None:intergenic
GCTTAGTGAAGGTGTGGACA+GGG 0.615579 8_4:-4034100 None:intergenic
AGCACAAAATTGTACAAGAG+AGG 0.616768 8_4:+4034120 Msa1307950:three_prime_UTR
TGTGGTTAGCCTAAGCACAT+CGG 0.628887 8_4:+4032390 Msa1307950:intron
ATTTCATACAAGAAAACACA+TGG 0.631983 8_4:-4033853 None:intergenic
CTCGTCCGTGAGCAGCTCTG+TGG 0.632697 8_4:-4032288 None:intergenic
TACATCCACAGAGCTGCTCA+CGG 0.640107 8_4:+4032283 Msa1307950:CDS
GGGACGTGGCCATGGAACGT+AGG 0.664354 8_4:+4032424 Msa1307950:CDS
TTGTACAAGAGAGGACACCA+TGG 0.707418 8_4:+4034129 Msa1307950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAATTGAATTGAAT+TGG + chr8_4:4032358-4032377 Msa1307950:intron 10.0%
!! AAATTAAAATTGAATTGAAT+TGG + chr8_4:4032358-4032377 Msa1307950:intron 10.0%
!!! TAAAACTTAATTTTCCTATC+AGG + chr8_4:4032667-4032686 Msa1307950:intron 20.0%
!! TTTAATTATTCTATCCTGAT+AGG - chr8_4:4032684-4032703 None:intergenic 20.0%
!! TTCTCATATAAATGCAAATA+AGG - chr8_4:4032982-4033001 None:intergenic 20.0%
!! CTCAAAATCTTAAAACTATT+TGG + chr8_4:4033195-4033214 Msa1307950:intron 20.0%
!! ATATAATTTCTTGCCATTAT+CGG + chr8_4:4033344-4033363 Msa1307950:intron 20.0%
!!! TTTCTTTTTTCTCTCAATAA+AGG - chr8_4:4033566-4033585 None:intergenic 20.0%
!! TACATAAAGAAAATCAAATC+TGG - chr8_4:4033685-4033704 None:intergenic 20.0%
!! CTTTATGTATGAAATTATCA+AGG + chr8_4:4033696-4033715 Msa1307950:intron 20.0%
!! ATTTATATGTTTCCAAATGT+AGG + chr8_4:4033737-4033756 Msa1307950:intron 20.0%
!! TATGAATATTATAACGCTTA+GGG - chr8_4:4033882-4033901 None:intergenic 20.0%
!! ATATGAATATTATAACGCTT+AGG - chr8_4:4033883-4033902 None:intergenic 20.0%
!! ACATAAATCTTGGTATTTAT+GGG + chr8_4:4034016-4034035 Msa1307950:three_prime_UTR 20.0%
!!! ATTCATTTAAAATAAAGGCA+AGG - chr8_4:4034080-4034099 None:intergenic 20.0%
!! AATCGATAATTTATGTAAGT+TGG + chr8_4:4034153-4034172 Msa1307950:three_prime_UTR 20.0%
!! ATCGATAATTTATGTAAGTT+GGG + chr8_4:4034154-4034173 Msa1307950:three_prime_UTR 20.0%
!!! TAAAACTTAATTTTCCTATC+AGG + chr8_4:4032667-4032686 Msa1307950:intron 20.0%
!! TTTAATTATTCTATCCTGAT+AGG - chr8_4:4032684-4032703 None:intergenic 20.0%
!! TTCTCATATAAATGCAAATA+AGG - chr8_4:4032982-4033001 None:intergenic 20.0%
!! CTCAAAATCTTAAAACTATT+TGG + chr8_4:4033195-4033214 Msa1307950:intron 20.0%
!! ATATAATTTCTTGCCATTAT+CGG + chr8_4:4033344-4033363 Msa1307950:intron 20.0%
!!! TTTCTTTTTTCTCTCAATAA+AGG - chr8_4:4033566-4033585 None:intergenic 20.0%
!! TACATAAAGAAAATCAAATC+TGG - chr8_4:4033685-4033704 None:intergenic 20.0%
!! CTTTATGTATGAAATTATCA+AGG + chr8_4:4033696-4033715 Msa1307950:intron 20.0%
!! ATTTATATGTTTCCAAATGT+AGG + chr8_4:4033737-4033756 Msa1307950:intron 20.0%
!! TATGAATATTATAACGCTTA+GGG - chr8_4:4033882-4033901 None:intergenic 20.0%
!! ATATGAATATTATAACGCTT+AGG - chr8_4:4033883-4033902 None:intergenic 20.0%
!! ACATAAATCTTGGTATTTAT+GGG + chr8_4:4034016-4034035 Msa1307950:three_prime_UTR 20.0%
!!! ATTCATTTAAAATAAAGGCA+AGG - chr8_4:4034080-4034099 None:intergenic 20.0%
!! AATCGATAATTTATGTAAGT+TGG + chr8_4:4034153-4034172 Msa1307950:three_prime_UTR 20.0%
! AAGAAAGAAAGAAAGAAAGA+AGG + chr8_4:4032153-4032172 Msa1307950:five_prime_UTR 25.0%
! AGAAAGAAAGAAAGAAAGAA+GGG + chr8_4:4032150-4032169 Msa1307950:five_prime_UTR 25.0%
! AAAGAAAGAAAGAAAGAAAG+GGG - chr8_4:4032152-4032171 None:intergenic 25.0%
! GAAAGAAAGAAAGAAAGAAA+GGG - chr8_4:4032151-4032170 None:intergenic 25.0%
! AGAAAGAAAGAAAGAAAGAA+AGG - chr8_4:4032150-4032169 None:intergenic 25.0%
!! AATCAGATCCATTGATAATA+GGG - chr8_4:4032565-4032584 None:intergenic 25.0%
! ATTCTCGTATGCTAATTTAT+TGG + chr8_4:4032786-4032805 Msa1307950:intron 25.0%
!!! TATGCTAATTTATTGGTTTG+TGG + chr8_4:4032793-4032812 Msa1307950:intron 25.0%
!!! ATAAAGCCCTTTTAAGTTTA+TGG + chr8_4:4032901-4032920 Msa1307950:intron 25.0%
!!! TAAAGCCCTTTTAAGTTTAT+GGG + chr8_4:4032902-4032921 Msa1307950:intron 25.0%
! TTGTACCCATAAACTTAAAA+GGG - chr8_4:4032910-4032929 None:intergenic 25.0%
! TTTGTACCCATAAACTTAAA+AGG - chr8_4:4032911-4032930 None:intergenic 25.0%
! AAATTATAGTGAAGTTAGAG+AGG + chr8_4:4032928-4032947 Msa1307950:intron 25.0%
! AATTATAGTGAAGTTAGAGA+GGG + chr8_4:4032929-4032948 Msa1307950:intron 25.0%
! AGAAATTACCTTCATTATGT+TGG - chr8_4:4033254-4033273 None:intergenic 25.0%
! ATTTCATACAAGAAAACACA+TGG - chr8_4:4033856-4033875 None:intergenic 25.0%
!!! TGTTTTCTTTTAGTTGAACA+TGG + chr8_4:4033915-4033934 Msa1307950:three_prime_UTR 25.0%
! GACATAAATCTTGGTATTTA+TGG + chr8_4:4034015-4034034 Msa1307950:three_prime_UTR 25.0%
! TTAAAATAAAGGCAAGGATT+GGG - chr8_4:4034074-4034093 None:intergenic 25.0%
!! TTTAAAATAAAGGCAAGGAT+TGG - chr8_4:4034075-4034094 None:intergenic 25.0%
!! CAGGGATTCATTTAAAATAA+AGG - chr8_4:4034085-4034104 None:intergenic 25.0%
! TCGATAATTTATGTAAGTTG+GGG + chr8_4:4034155-4034174 Msa1307950:three_prime_UTR 25.0%
! AAGAAAGAAAGAAAGAAAGA+AGG + chr8_4:4032153-4032172 Msa1307950:five_prime_UTR 25.0%
! AGAAAGAAAGAAAGAAAGAA+GGG + chr8_4:4032150-4032169 Msa1307950:five_prime_UTR 25.0%
! AAAGAAAGAAAGAAAGAAAG+GGG - chr8_4:4032152-4032171 None:intergenic 25.0%
! GAAAGAAAGAAAGAAAGAAA+GGG - chr8_4:4032151-4032170 None:intergenic 25.0%
! AGAAAGAAAGAAAGAAAGAA+AGG - chr8_4:4032150-4032169 None:intergenic 25.0%
!! AATCAGATCCATTGATAATA+GGG - chr8_4:4032565-4032584 None:intergenic 25.0%
! ATTCTCGTATGCTAATTTAT+TGG + chr8_4:4032786-4032805 Msa1307950:intron 25.0%
!!! TATGCTAATTTATTGGTTTG+TGG + chr8_4:4032793-4032812 Msa1307950:intron 25.0%
!!! ATAAAGCCCTTTTAAGTTTA+TGG + chr8_4:4032901-4032920 Msa1307950:intron 25.0%
!!! TAAAGCCCTTTTAAGTTTAT+GGG + chr8_4:4032902-4032921 Msa1307950:intron 25.0%
! TTGTACCCATAAACTTAAAA+GGG - chr8_4:4032910-4032929 None:intergenic 25.0%
! TTTGTACCCATAAACTTAAA+AGG - chr8_4:4032911-4032930 None:intergenic 25.0%
! AAATTATAGTGAAGTTAGAG+AGG + chr8_4:4032928-4032947 Msa1307950:intron 25.0%
! AATTATAGTGAAGTTAGAGA+GGG + chr8_4:4032929-4032948 Msa1307950:intron 25.0%
! AGAAATTACCTTCATTATGT+TGG - chr8_4:4033254-4033273 None:intergenic 25.0%
! ATTTCATACAAGAAAACACA+TGG - chr8_4:4033856-4033875 None:intergenic 25.0%
!!! TGTTTTCTTTTAGTTGAACA+TGG + chr8_4:4033915-4033934 Msa1307950:three_prime_UTR 25.0%
! GACATAAATCTTGGTATTTA+TGG + chr8_4:4034015-4034034 Msa1307950:three_prime_UTR 25.0%
! TTAAAATAAAGGCAAGGATT+GGG - chr8_4:4034074-4034093 None:intergenic 25.0%
!! TTTAAAATAAAGGCAAGGAT+TGG - chr8_4:4034075-4034094 None:intergenic 25.0%
!! CAGGGATTCATTTAAAATAA+AGG - chr8_4:4034085-4034104 None:intergenic 25.0%
!!! TTGAATTGGATCTGTTTTTG+TGG + chr8_4:4032372-4032391 Msa1307950:intron 30.0%
TCTTCTTCCAATTAACAAAC+AGG + chr8_4:4032471-4032490 Msa1307950:exon 30.0%
CTTTCTTTCCCTATTATCAA+TGG + chr8_4:4032554-4032573 Msa1307950:intron 30.0%
! CAATCAGATCCATTGATAAT+AGG - chr8_4:4032566-4032585 None:intergenic 30.0%
! TAGAGATGCAATTGCAATTT+TGG + chr8_4:4032642-4032661 Msa1307950:intron 30.0%
!!! CAACCACTTTTTACAACTTT+TGG + chr8_4:4032721-4032740 Msa1307950:intron 30.0%
TGTCCAAAAGTTGTAAAAAG+TGG - chr8_4:4032727-4032746 None:intergenic 30.0%
! AAGTGTTAAGCTTAAGTTGT+TGG + chr8_4:4032823-4032842 Msa1307950:intron 30.0%
! AGTGTTAAGCTTAAGTTGTT+GGG + chr8_4:4032824-4032843 Msa1307950:intron 30.0%
TTCCAAAATGTTTAGGCATA+GGG + chr8_4:4032956-4032975 Msa1307950:intron 30.0%
TGTAAGTGAGTGACTTAAAT+AGG - chr8_4:4033045-4033064 None:intergenic 30.0%
AATCTCAGCACAAAAACAAA+TGG - chr8_4:4033107-4033126 None:intergenic 30.0%
AATTACCTTCATTATGTTGG+AGG - chr8_4:4033251-4033270 None:intergenic 30.0%
TGCAATATCTGCAATGATTT+GGG + chr8_4:4033284-4033303 Msa1307950:intron 30.0%
CTATATGATAGATCCGATAA+TGG - chr8_4:4033360-4033379 None:intergenic 30.0%
TTATCGGATCTATCATATAG+TGG + chr8_4:4033360-4033379 Msa1307950:intron 30.0%
TGGTCTTTAACAACTTCTTT+AGG + chr8_4:4033380-4033399 Msa1307950:intron 30.0%
GTTGGATATTCTGAATCATA+GGG + chr8_4:4033433-4033452 Msa1307950:intron 30.0%
ATATTCTGAATCATAGGGAT+TGG + chr8_4:4033438-4033457 Msa1307950:intron 30.0%
! TCTCCTTGATATTCTTCTTT+TGG + chr8_4:4033470-4033489 Msa1307950:intron 30.0%
TGACCAAAAGAAGAATATCA+AGG - chr8_4:4033476-4033495 None:intergenic 30.0%
CAGATAAAACAACCTACATT+TGG - chr8_4:4033752-4033771 None:intergenic 30.0%
TTGTGCTTTGACATAAATCT+TGG + chr8_4:4034006-4034025 Msa1307950:three_prime_UTR 30.0%
! TACAATTTTGTGCTTAGTGA+AGG - chr8_4:4034114-4034133 None:intergenic 30.0%
! ACATAAATTATCGATTGCCA+TGG - chr8_4:4034149-4034168 None:intergenic 30.0%
!!! TTGAATTGGATCTGTTTTTG+TGG + chr8_4:4032372-4032391 Msa1307950:intron 30.0%
TCTTCTTCCAATTAACAAAC+AGG + chr8_4:4032471-4032490 Msa1307950:exon 30.0%
CTTTCTTTCCCTATTATCAA+TGG + chr8_4:4032554-4032573 Msa1307950:intron 30.0%
! CAATCAGATCCATTGATAAT+AGG - chr8_4:4032566-4032585 None:intergenic 30.0%
! TAGAGATGCAATTGCAATTT+TGG + chr8_4:4032642-4032661 Msa1307950:intron 30.0%
!!! CAACCACTTTTTACAACTTT+TGG + chr8_4:4032721-4032740 Msa1307950:intron 30.0%
TGTCCAAAAGTTGTAAAAAG+TGG - chr8_4:4032727-4032746 None:intergenic 30.0%
! AAGTGTTAAGCTTAAGTTGT+TGG + chr8_4:4032823-4032842 Msa1307950:intron 30.0%
! AGTGTTAAGCTTAAGTTGTT+GGG + chr8_4:4032824-4032843 Msa1307950:intron 30.0%
TTCCAAAATGTTTAGGCATA+GGG + chr8_4:4032956-4032975 Msa1307950:intron 30.0%
TGTAAGTGAGTGACTTAAAT+AGG - chr8_4:4033045-4033064 None:intergenic 30.0%
AATCTCAGCACAAAAACAAA+TGG - chr8_4:4033107-4033126 None:intergenic 30.0%
AATTACCTTCATTATGTTGG+AGG - chr8_4:4033251-4033270 None:intergenic 30.0%
TGCAATATCTGCAATGATTT+GGG + chr8_4:4033284-4033303 Msa1307950:intron 30.0%
CTATATGATAGATCCGATAA+TGG - chr8_4:4033360-4033379 None:intergenic 30.0%
TTATCGGATCTATCATATAG+TGG + chr8_4:4033360-4033379 Msa1307950:intron 30.0%
TGGTCTTTAACAACTTCTTT+AGG + chr8_4:4033380-4033399 Msa1307950:intron 30.0%
GTTGGATATTCTGAATCATA+GGG + chr8_4:4033433-4033452 Msa1307950:intron 30.0%
ATATTCTGAATCATAGGGAT+TGG + chr8_4:4033438-4033457 Msa1307950:intron 30.0%
! TCTCCTTGATATTCTTCTTT+TGG + chr8_4:4033470-4033489 Msa1307950:intron 30.0%
TGACCAAAAGAAGAATATCA+AGG - chr8_4:4033476-4033495 None:intergenic 30.0%
CAGATAAAACAACCTACATT+TGG - chr8_4:4033752-4033771 None:intergenic 30.0%
TTGTGCTTTGACATAAATCT+TGG + chr8_4:4034006-4034025 Msa1307950:three_prime_UTR 30.0%
! TACAATTTTGTGCTTAGTGA+AGG - chr8_4:4034114-4034133 None:intergenic 30.0%
! ACATAAATTATCGATTGCCA+TGG - chr8_4:4034149-4034168 None:intergenic 30.0%
AAAAACTACAGAAACGTGTG+AGG - chr8_4:4032121-4032140 None:intergenic 35.0%
TTGGAAGCTATGTTACCTTT+GGG + chr8_4:4032217-4032236 Msa1307950:CDS 35.0%
! TTACCTTTGGGAATAATTGC+TGG + chr8_4:4032229-4032248 Msa1307950:CDS 35.0%
ATTCCAGCAATTATTCCCAA+AGG - chr8_4:4032235-4032254 None:intergenic 35.0%
! TAGGGTACCTGTTTGTTAAT+TGG - chr8_4:4032481-4032500 None:intergenic 35.0%
GAAAGAAAGAAAGGGGATTA+GGG - chr8_4:4032499-4032518 None:intergenic 35.0%
AGAAAGAAAGAAAGGGGATT+AGG - chr8_4:4032500-4032519 None:intergenic 35.0%
GTTAAAATCCGCTATAGAGT+TGG - chr8_4:4032589-4032608 None:intergenic 35.0%
!! GCTAATTTATTGGTTTGTGG+AGG + chr8_4:4032796-4032815 Msa1307950:intron 35.0%
CTTCCAAAATGTTTAGGCAT+AGG + chr8_4:4032955-4032974 Msa1307950:intron 35.0%
!!! GTGGTTTGTCATTTTTGCAA+TGG - chr8_4:4033023-4033042 None:intergenic 35.0%
AAGTGAGTGACTTAAATAGG+TGG - chr8_4:4033042-4033061 None:intergenic 35.0%
!! GATCCTTTGAGCTTTAAGTA+TGG + chr8_4:4033068-4033087 Msa1307950:intron 35.0%
TGTCCATACTTAAAGCTCAA+AGG - chr8_4:4033074-4033093 None:intergenic 35.0%
TTACACCTCCAACATAATGA+AGG + chr8_4:4033243-4033262 Msa1307950:intron 35.0%
GTGCAATATCTGCAATGATT+TGG + chr8_4:4033283-4033302 Msa1307950:intron 35.0%
GCAATATCTGCAATGATTTG+GGG + chr8_4:4033285-4033304 Msa1307950:intron 35.0%
!! CAACTTCTTTAGGATGCTAA+TGG + chr8_4:4033390-4033409 Msa1307950:intron 35.0%
GATGCTAATGGTTATTCAGA+GGG + chr8_4:4033402-4033421 Msa1307950:intron 35.0%
CGTTGGATATTCTGAATCAT+AGG + chr8_4:4033432-4033451 Msa1307950:intron 35.0%
! GATATTCTTCTTTTGGTCAG+TGG + chr8_4:4033477-4033496 Msa1307950:intron 35.0%
! TTTTGGTCAGTGGTTTCATT+AGG + chr8_4:4033487-4033506 Msa1307950:intron 35.0%
!! TTGCAATTTTGACGACTACA+AGG + chr8_4:4033590-4033609 Msa1307950:intron 35.0%
ACGACTACAAGGACAATATT+AGG + chr8_4:4033601-4033620 Msa1307950:intron 35.0%
AGCACAAAATTGTACAAGAG+AGG + chr8_4:4034120-4034139 Msa1307950:three_prime_UTR 35.0%
AAAAACTACAGAAACGTGTG+AGG - chr8_4:4032121-4032140 None:intergenic 35.0%
TTGGAAGCTATGTTACCTTT+GGG + chr8_4:4032217-4032236 Msa1307950:CDS 35.0%
! TTACCTTTGGGAATAATTGC+TGG + chr8_4:4032229-4032248 Msa1307950:CDS 35.0%
ATTCCAGCAATTATTCCCAA+AGG - chr8_4:4032235-4032254 None:intergenic 35.0%
! TAGGGTACCTGTTTGTTAAT+TGG - chr8_4:4032481-4032500 None:intergenic 35.0%
GAAAGAAAGAAAGGGGATTA+GGG - chr8_4:4032499-4032518 None:intergenic 35.0%
AGAAAGAAAGAAAGGGGATT+AGG - chr8_4:4032500-4032519 None:intergenic 35.0%
GTTAAAATCCGCTATAGAGT+TGG - chr8_4:4032589-4032608 None:intergenic 35.0%
!! GCTAATTTATTGGTTTGTGG+AGG + chr8_4:4032796-4032815 Msa1307950:intron 35.0%
CTTCCAAAATGTTTAGGCAT+AGG + chr8_4:4032955-4032974 Msa1307950:intron 35.0%
!!! GTGGTTTGTCATTTTTGCAA+TGG - chr8_4:4033023-4033042 None:intergenic 35.0%
AAGTGAGTGACTTAAATAGG+TGG - chr8_4:4033042-4033061 None:intergenic 35.0%
!! GATCCTTTGAGCTTTAAGTA+TGG + chr8_4:4033068-4033087 Msa1307950:intron 35.0%
TGTCCATACTTAAAGCTCAA+AGG - chr8_4:4033074-4033093 None:intergenic 35.0%
TTACACCTCCAACATAATGA+AGG + chr8_4:4033243-4033262 Msa1307950:intron 35.0%
GTGCAATATCTGCAATGATT+TGG + chr8_4:4033283-4033302 Msa1307950:intron 35.0%
GCAATATCTGCAATGATTTG+GGG + chr8_4:4033285-4033304 Msa1307950:intron 35.0%
!! CAACTTCTTTAGGATGCTAA+TGG + chr8_4:4033390-4033409 Msa1307950:intron 35.0%
GATGCTAATGGTTATTCAGA+GGG + chr8_4:4033402-4033421 Msa1307950:intron 35.0%
CGTTGGATATTCTGAATCAT+AGG + chr8_4:4033432-4033451 Msa1307950:intron 35.0%
! GATATTCTTCTTTTGGTCAG+TGG + chr8_4:4033477-4033496 Msa1307950:intron 35.0%
! TTTTGGTCAGTGGTTTCATT+AGG + chr8_4:4033487-4033506 Msa1307950:intron 35.0%
!! TTGCAATTTTGACGACTACA+AGG + chr8_4:4033590-4033609 Msa1307950:intron 35.0%
ACGACTACAAGGACAATATT+AGG + chr8_4:4033601-4033620 Msa1307950:intron 35.0%
AGCACAAAATTGTACAAGAG+AGG + chr8_4:4034120-4034139 Msa1307950:three_prime_UTR 35.0%
GAAGAAGAGAAAGAGAGAGA+TGG + chr8_4:4032183-4032202 Msa1307950:exon 40.0%
GTTGGAAGCTATGTTACCTT+TGG + chr8_4:4032216-4032235 Msa1307950:CDS 40.0%
TGCTGGAATGCTTTGTGTTA+TGG + chr8_4:4032246-4032265 Msa1307950:CDS 40.0%
GCTGGAATGCTTTGTGTTAT+GGG + chr8_4:4032247-4032266 Msa1307950:CDS 40.0%
AAATCATTGCCGATGTGCTT+AGG - chr8_4:4032402-4032421 None:intergenic 40.0%
TCTGATTGCCAACTCTATAG+CGG + chr8_4:4032578-4032597 Msa1307950:intron 40.0%
CTAAGCTTCACACACAGTAA+TGG - chr8_4:4032625-4032644 None:intergenic 40.0%
GGGAGACTTCCAAAATGTTT+AGG + chr8_4:4032949-4032968 Msa1307950:intron 40.0%
AATGTATAGACCACCTAACC+TGG + chr8_4:4033158-4033177 Msa1307950:intron 40.0%
ATGTATAGACCACCTAACCT+GGG + chr8_4:4033159-4033178 Msa1307950:intron 40.0%
GGATGCTAATGGTTATTCAG+AGG + chr8_4:4033401-4033420 Msa1307950:intron 40.0%
! ATTCAGAGGGTTTTCTTCGT+TGG + chr8_4:4033415-4033434 Msa1307950:intron 40.0%
GTGGTTTCATTAGGAGGATT+AGG + chr8_4:4033496-4033515 Msa1307950:intron 40.0%
! TTTTGTGCTTAGTGAAGGTG+TGG - chr8_4:4034109-4034128 None:intergenic 40.0%
GAAGAAGAGAAAGAGAGAGA+TGG + chr8_4:4032183-4032202 Msa1307950:exon 40.0%
GTTGGAAGCTATGTTACCTT+TGG + chr8_4:4032216-4032235 Msa1307950:CDS 40.0%
TGCTGGAATGCTTTGTGTTA+TGG + chr8_4:4032246-4032265 Msa1307950:CDS 40.0%
GCTGGAATGCTTTGTGTTAT+GGG + chr8_4:4032247-4032266 Msa1307950:CDS 40.0%
AAATCATTGCCGATGTGCTT+AGG - chr8_4:4032402-4032421 None:intergenic 40.0%
TCTGATTGCCAACTCTATAG+CGG + chr8_4:4032578-4032597 Msa1307950:intron 40.0%
CTAAGCTTCACACACAGTAA+TGG - chr8_4:4032625-4032644 None:intergenic 40.0%
GGGAGACTTCCAAAATGTTT+AGG + chr8_4:4032949-4032968 Msa1307950:intron 40.0%
AATGTATAGACCACCTAACC+TGG + chr8_4:4033158-4033177 Msa1307950:intron 40.0%
ATGTATAGACCACCTAACCT+GGG + chr8_4:4033159-4033178 Msa1307950:intron 40.0%
GGATGCTAATGGTTATTCAG+AGG + chr8_4:4033401-4033420 Msa1307950:intron 40.0%
! ATTCAGAGGGTTTTCTTCGT+TGG + chr8_4:4033415-4033434 Msa1307950:intron 40.0%
GTGGTTTCATTAGGAGGATT+AGG + chr8_4:4033496-4033515 Msa1307950:intron 40.0%
! TTTTGTGCTTAGTGAAGGTG+TGG - chr8_4:4034109-4034128 None:intergenic 40.0%
!! TGTGGTTAGCCTAAGCACAT+CGG + chr8_4:4032390-4032409 Msa1307950:intron 45.0%
AGCACATCGGCAATGATTTG+TGG + chr8_4:4032403-4032422 Msa1307950:CDS 45.0%
! GCACATCGGCAATGATTTGT+GGG + chr8_4:4032404-4032423 Msa1307950:CDS 45.0%
CAGTAATGGCAACGAGAGTA+TGG - chr8_4:4032611-4032630 None:intergenic 45.0%
! GGCCCTATGCCTAAACATTT+TGG - chr8_4:4032961-4032980 None:intergenic 45.0%
! CTGCAATGATTTGGGGTCTA+TGG + chr8_4:4033292-4033311 Msa1307950:intron 45.0%
! TCTGAATCATAGGGATTGGC+AGG + chr8_4:4033442-4033461 Msa1307950:intron 45.0%
TGGTCAGTGGTTTCATTAGG+AGG + chr8_4:4033490-4033509 Msa1307950:intron 45.0%
! TGTTTTATCTGCGTGCGTGA+AGG + chr8_4:4033761-4033780 Msa1307950:three_prime_UTR 45.0%
! GTTTTATCTGCGTGCGTGAA+GGG + chr8_4:4033762-4033781 Msa1307950:three_prime_UTR 45.0%
AGCAATCTACTCTGCTTCCA+TGG - chr8_4:4033821-4033840 None:intergenic 45.0%
AAGGCAAGGATTGGGATTAC+AGG - chr8_4:4034066-4034085 None:intergenic 45.0%
TTGTACAAGAGAGGACACCA+TGG + chr8_4:4034129-4034148 Msa1307950:three_prime_UTR 45.0%
!! TGTGGTTAGCCTAAGCACAT+CGG + chr8_4:4032390-4032409 Msa1307950:intron 45.0%
AGCACATCGGCAATGATTTG+TGG + chr8_4:4032403-4032422 Msa1307950:CDS 45.0%
! GCACATCGGCAATGATTTGT+GGG + chr8_4:4032404-4032423 Msa1307950:CDS 45.0%
CAGTAATGGCAACGAGAGTA+TGG - chr8_4:4032611-4032630 None:intergenic 45.0%
! GGCCCTATGCCTAAACATTT+TGG - chr8_4:4032961-4032980 None:intergenic 45.0%
! CTGCAATGATTTGGGGTCTA+TGG + chr8_4:4033292-4033311 Msa1307950:intron 45.0%
! TCTGAATCATAGGGATTGGC+AGG + chr8_4:4033442-4033461 Msa1307950:intron 45.0%
TGGTCAGTGGTTTCATTAGG+AGG + chr8_4:4033490-4033509 Msa1307950:intron 45.0%
! TGTTTTATCTGCGTGCGTGA+AGG + chr8_4:4033761-4033780 Msa1307950:three_prime_UTR 45.0%
! GTTTTATCTGCGTGCGTGAA+GGG + chr8_4:4033762-4033781 Msa1307950:three_prime_UTR 45.0%
AGCAATCTACTCTGCTTCCA+TGG - chr8_4:4033821-4033840 None:intergenic 45.0%
AAGGCAAGGATTGGGATTAC+AGG - chr8_4:4034066-4034085 None:intergenic 45.0%
TTGTACAAGAGAGGACACCA+TGG + chr8_4:4034129-4034148 Msa1307950:three_prime_UTR 45.0%
AGAGAGAGATGGCGTTGCAT+TGG + chr8_4:4032194-4032213 Msa1307950:exon 50.0%
! AGAGATGGCGTTGCATTGGT+TGG + chr8_4:4032198-4032217 Msa1307950:exon 50.0%
TACATCCACAGAGCTGCTCA+CGG + chr8_4:4032283-4032302 Msa1307950:CDS 50.0%
CTTCTTGTCCCTACGTTCCA+TGG - chr8_4:4032436-4032455 None:intergenic 50.0%
TATAGACCACCTAACCTGGG+AGG + chr8_4:4033162-4033181 Msa1307950:intron 50.0%
TAGTTAGAGCCTCCCAGGTT+AGG - chr8_4:4033174-4033193 None:intergenic 50.0%
TGAGATAGTTAGAGCCTCCC+AGG - chr8_4:4033179-4033198 None:intergenic 50.0%
! GCTTAGTGAAGGTGTGGACA+GGG - chr8_4:4034103-4034122 None:intergenic 50.0%
! TGCTTAGTGAAGGTGTGGAC+AGG - chr8_4:4034104-4034123 None:intergenic 50.0%
AGAGAGAGATGGCGTTGCAT+TGG + chr8_4:4032194-4032213 Msa1307950:exon 50.0%
! AGAGATGGCGTTGCATTGGT+TGG + chr8_4:4032198-4032217 Msa1307950:exon 50.0%
TACATCCACAGAGCTGCTCA+CGG + chr8_4:4032283-4032302 Msa1307950:CDS 50.0%
CTTCTTGTCCCTACGTTCCA+TGG - chr8_4:4032436-4032455 None:intergenic 50.0%
TATAGACCACCTAACCTGGG+AGG + chr8_4:4033162-4033181 Msa1307950:intron 50.0%
TAGTTAGAGCCTCCCAGGTT+AGG - chr8_4:4033174-4033193 None:intergenic 50.0%
TGAGATAGTTAGAGCCTCCC+AGG - chr8_4:4033179-4033198 None:intergenic 50.0%
! GCTTAGTGAAGGTGTGGACA+GGG - chr8_4:4034103-4034122 None:intergenic 50.0%
! TGCTTAGTGAAGGTGTGGAC+AGG - chr8_4:4034104-4034123 None:intergenic 50.0%
! CGGCAATGATTTGTGGGACG+TGG + chr8_4:4032410-4032429 Msa1307950:CDS 55.0%
! TGATTTGTGGGACGTGGCCA+TGG + chr8_4:4032416-4032435 Msa1307950:CDS 55.0%
TTAGAGCCTCCCAGGTTAGG+TGG - chr8_4:4033171-4033190 None:intergenic 55.0%
GTTGCTCTCCAGCTGTTCCA+TGG + chr8_4:4033801-4033820 Msa1307950:three_prime_UTR 55.0%
CTCTGCTTCCATGGAACAGC+TGG - chr8_4:4033812-4033831 None:intergenic 55.0%
! CGGCAATGATTTGTGGGACG+TGG + chr8_4:4032410-4032429 Msa1307950:CDS 55.0%
! TGATTTGTGGGACGTGGCCA+TGG + chr8_4:4032416-4032435 Msa1307950:CDS 55.0%
TTAGAGCCTCCCAGGTTAGG+TGG - chr8_4:4033171-4033190 None:intergenic 55.0%
GTTGCTCTCCAGCTGTTCCA+TGG + chr8_4:4033801-4033820 Msa1307950:three_prime_UTR 55.0%
CTCTGCTTCCATGGAACAGC+TGG - chr8_4:4033812-4033831 None:intergenic 55.0%
GGACGTGGCCATGGAACGTA+GGG + chr8_4:4032425-4032444 Msa1307950:CDS 60.0%
GGACGTGGCCATGGAACGTA+GGG + chr8_4:4032425-4032444 Msa1307950:CDS 60.0%
CTCGTCCGTGAGCAGCTCTG+TGG - chr8_4:4032291-4032310 None:intergenic 65.0%
GGGACGTGGCCATGGAACGT+AGG + chr8_4:4032424-4032443 Msa1307950:CDS 65.0%
CTCGTCCGTGAGCAGCTCTG+TGG - chr8_4:4032291-4032310 None:intergenic 65.0%
GGGACGTGGCCATGGAACGT+AGG + chr8_4:4032424-4032443 Msa1307950:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 4032093 4034176 4032093 ID=Msa1307950;Name=Msa1307950
chr8_4 mRNA 4032093 4034176 4032093 ID=Msa1307950-mRNA-1;Parent=Msa1307950;Name=Msa1307950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=109|1|1|1|0.5|0.33|3|425|64
chr8_4 exon 4032093 4032309 4032093 ID=Msa1307950-mRNA-1:exon:1162;Parent=Msa1307950-mRNA-1
chr8_4 exon 4032399 4032492 4032399 ID=Msa1307950-mRNA-1:exon:1163;Parent=Msa1307950-mRNA-1
chr8_4 exon 4033759 4034176 4033759 ID=Msa1307950-mRNA-1:exon:1164;Parent=Msa1307950-mRNA-1
chr8_4 five_prime_UTR 4032093 4032201 4032093 ID=Msa1307950-mRNA-1:five_prime_utr;Parent=Msa1307950-mRNA-1
chr8_4 CDS 4032202 4032309 4032202 ID=Msa1307950-mRNA-1:cds;Parent=Msa1307950-mRNA-1
chr8_4 CDS 4032399 4032485 4032399 ID=Msa1307950-mRNA-1:cds;Parent=Msa1307950-mRNA-1
chr8_4 three_prime_UTR 4032486 4032492 4032486 ID=Msa1307950-mRNA-1:three_prime_utr;Parent=Msa1307950-mRNA-1
chr8_4 three_prime_UTR 4033759 4034176 4033759 ID=Msa1307950-mRNA-1:three_prime_utr;Parent=Msa1307950-mRNA-1
Gene Sequence

>Msa1307950

ATGGCGTTGCATTGGTTGGAAGCTATGTTACCTTTGGGAATAATTGCTGGAATGCTTTGTGTTATGGGTAACGCTCAGTATTACATCCACAGAGCTGCTCACGGACGACCTAAGCACATCGGCAATGATTTGTGGGACGTGGCCATGGAACGTAGGGACAAGAAGCTCGTCGATCAAGCTTCTTCTTCCAATTAA

Protein sequence

>Msa1307950

MALHWLEAMLPLGIIAGMLCVMGNAQYYIHRAAHGRPKHIGNDLWDVAMERRDKKLVDQASSSN*