AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0268130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268130 MtrunA17_Chr2g0285451 100.000 69 0 0 37 105 1 69 1.58e-44 138
Msa0268130 MtrunA17_Chr4g0033761 94.203 69 4 0 37 105 1 69 4.16e-42 132
Msa0268130 MtrunA17_Chr8g0376751 89.855 69 7 0 37 105 1 69 1.03e-39 126
Msa0268130 MtrunA17_Chr7g0216191 86.957 69 9 0 37 105 1 69 8.16e-37 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268130 AT2G43460.1 91.304 69 6 0 37 105 1 69 1.20e-40 129
Msa0268130 AT3G59540.1 91.304 69 6 0 37 105 1 69 1.20e-40 129

Find 39 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACGAAAACGTTTAGGATT+AGG 0.264287 2_2:+70078561 Msa0268130:CDS
TTCTCTCCATTTCATCCATT+TGG 0.273233 2_2:-70080551 None:intergenic
TAAGCAAATCAACGAGATTA+AGG 0.294566 2_2:+70079663 Msa0268130:CDS
TTCAAGACCTTTAGAGGTAT+TGG 0.299687 2_2:+70080404 Msa0268130:exon
TTTGTTTCTGTGATAAGTTT+TGG 0.304054 2_2:+70080727 Msa0268130:three_prime_UTR
ATCTCTCCAAATGGATGAAA+TGG 0.308166 2_2:+70080545 Msa0268130:three_prime_UTR
TACGAAAACGTTTAGGATTA+GGG 0.309907 2_2:+70078562 Msa0268130:CDS
TGAGTGTTCAAGACCTTTAG+AGG 0.372905 2_2:+70080398 Msa0268130:CDS
AAAGAACTACGAAAACGTTT+AGG 0.375594 2_2:+70078555 Msa0268130:CDS
TGACCTCGCATCCTTCCTTC+TGG 0.376233 2_2:-70079701 None:intergenic
TTGAGATTGTAGCCAGGAAA+TGG 0.416064 2_2:+70080609 Msa0268130:three_prime_UTR
TGGAGAGATATAGATCCATT+TGG 0.428839 2_2:-70080531 None:intergenic
TGGATCTATATCTCTCCAAA+TGG 0.457727 2_2:+70080536 Msa0268130:three_prime_UTR
TTCTCATCCAATACCTCTAA+AGG 0.468641 2_2:-70080411 None:intergenic
CTCACTGCCTCTTGCAACAA+TGG 0.469145 2_2:+70078622 Msa0268130:CDS
GAGTTAAGATCCTCTCCATT+TGG 0.475407 2_2:-70080576 None:intergenic
AGTGAGAATCAAGAGGAGTA+AGG 0.485084 2_2:+70079723 Msa0268130:CDS
AGGTATTGGATGAGAAATCA+AGG 0.495732 2_2:+70080418 Msa0268130:three_prime_UTR
TAAGGATGTGGTTAAGTTCA+AGG 0.499148 2_2:+70079741 Msa0268130:CDS
AAGGGTAAAGATCCTCCAAA+TGG 0.506011 2_2:+70080516 Msa0268130:three_prime_UTR
GAAATGGAGAGAATACCAAA+TGG 0.517514 2_2:+70080561 Msa0268130:three_prime_UTR
ATGTGGTTAAGTTCAAGGTC+AGG 0.518401 2_2:+70079746 Msa0268130:CDS
AATCAAGAGGAGTAAGGATG+TGG 0.526249 2_2:+70079729 Msa0268130:CDS
ACTAAGTGTGTAGAGGTACT+TGG 0.532503 2_2:-70079773 None:intergenic
TTAATCTCGTTGATTTGCTT+AGG 0.534022 2_2:-70079661 None:intergenic
CCTTCTCACTGCCAGAAGGA+AGG 0.537276 2_2:+70079690 Msa0268130:CDS
TTGAAGCAATCACTTCCTCC+AGG 0.552717 2_2:+70079823 Msa0268130:CDS
AGAGATATAGATCCATTTGG+AGG 0.564353 2_2:-70080528 None:intergenic
CCTTCCTTCTGGCAGTGAGA+AGG 0.565796 2_2:-70079690 None:intergenic
TTTGTGAGTTGATCTTGTAA+GGG 0.574402 2_2:+70080498 Msa0268130:three_prime_UTR
AAAATCACCATTGTTGCAAG+AGG 0.583889 2_2:-70078629 None:intergenic
ATTTCCTTCTCACTGCCAGA+AGG 0.584170 2_2:+70079686 Msa0268130:CDS
TGTAACTTGAGATTGTAGCC+AGG 0.592891 2_2:+70080603 Msa0268130:three_prime_UTR
CGAGGTCAGTGAGAATCAAG+AGG 0.618562 2_2:+70079716 Msa0268130:CDS
GGAGAGAATACCAAATGGAG+AGG 0.623091 2_2:+70080566 Msa0268130:three_prime_UTR
CTGCCAGAAGGAAGGATGCG+AGG 0.654921 2_2:+70079698 Msa0268130:CDS
CAAACACACTAAGTGTGTAG+AGG 0.657075 2_2:-70079780 None:intergenic
TTGGATGAGAAATCAAGGAG+AGG 0.695988 2_2:+70080423 Msa0268130:three_prime_UTR
TTAGGATTAGGGTTTATCAG+CGG 0.714795 2_2:+70078573 Msa0268130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAAAATATAAAAT+GGG - chr2_2:70078791-70078810 None:intergenic 0.0%
!! AAATTAATAAAAATATAAAA+TGG - chr2_2:70078792-70078811 None:intergenic 0.0%
!! AATTAATAAAAATATAAAAT+GGG - chr2_2:70078791-70078810 None:intergenic 0.0%
!! AAATTAATAAAAATATAAAA+TGG - chr2_2:70078792-70078811 None:intergenic 0.0%
!! AATTGAGAAATTAGAAAAAA+GGG - chr2_2:70078664-70078683 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG + chr2_2:70078729-70078748 Msa0268130:intron 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG + chr2_2:70078833-70078852 Msa0268130:intron 15.0%
!! AACAATAACAAACAAAAATT+TGG - chr2_2:70079566-70079585 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG + chr2_2:70079871-70079890 Msa0268130:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG + chr2_2:70080058-70080077 Msa0268130:intron 15.0%
!! AATTGAGAAATTAGAAAAAA+GGG - chr2_2:70078664-70078683 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG + chr2_2:70078729-70078748 Msa0268130:intron 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG + chr2_2:70078833-70078852 Msa0268130:intron 15.0%
!! AACAATAACAAACAAAAATT+TGG - chr2_2:70079566-70079585 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG + chr2_2:70079871-70079890 Msa0268130:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG + chr2_2:70080058-70080077 Msa0268130:intron 15.0%
!! ATTGAGAAATTAGAAAAAAG+GGG - chr2_2:70078663-70078682 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG - chr2_2:70078665-70078684 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG + chr2_2:70078936-70078955 Msa0268130:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG + chr2_2:70078937-70078956 Msa0268130:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG + chr2_2:70078985-70079004 Msa0268130:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG + chr2_2:70079341-70079360 Msa0268130:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG + chr2_2:70079910-70079929 Msa0268130:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG - chr2_2:70080219-70080238 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG - chr2_2:70080229-70080248 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG + chr2_2:70080285-70080304 Msa0268130:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG - chr2_2:70080290-70080309 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG - chr2_2:70080321-70080340 None:intergenic 20.0%
!! ATTGAGAAATTAGAAAAAAG+GGG - chr2_2:70078663-70078682 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG - chr2_2:70078665-70078684 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG + chr2_2:70078936-70078955 Msa0268130:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG + chr2_2:70078937-70078956 Msa0268130:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG + chr2_2:70078985-70079004 Msa0268130:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG + chr2_2:70079341-70079360 Msa0268130:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG + chr2_2:70079910-70079929 Msa0268130:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG - chr2_2:70080219-70080238 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG - chr2_2:70080229-70080248 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG + chr2_2:70080285-70080304 Msa0268130:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG - chr2_2:70080290-70080309 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG - chr2_2:70080321-70080340 None:intergenic 20.0%
! TTGAGAAATTAGAAAAAAGG+GGG - chr2_2:70078662-70078681 None:intergenic 25.0%
! GAAGTAGTTTATGAAAAAAC+AGG - chr2_2:70079106-70079125 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG + chr2_2:70079301-70079320 Msa0268130:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG - chr2_2:70079343-70079362 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG + chr2_2:70079340-70079359 Msa0268130:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG - chr2_2:70079936-70079955 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG - chr2_2:70079937-70079956 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG + chr2_2:70080185-70080204 Msa0268130:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG - chr2_2:70080322-70080341 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG - chr2_2:70080332-70080351 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG + chr2_2:70080645-70080664 Msa0268130:three_prime_UTR 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG + chr2_2:70080664-70080683 Msa0268130:three_prime_UTR 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG + chr2_2:70080727-70080746 Msa0268130:three_prime_UTR 25.0%
! TTGAGAAATTAGAAAAAAGG+GGG - chr2_2:70078662-70078681 None:intergenic 25.0%
! GAAGTAGTTTATGAAAAAAC+AGG - chr2_2:70079106-70079125 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG + chr2_2:70079301-70079320 Msa0268130:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG - chr2_2:70079343-70079362 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG + chr2_2:70079340-70079359 Msa0268130:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG - chr2_2:70079936-70079955 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG - chr2_2:70079937-70079956 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG + chr2_2:70080185-70080204 Msa0268130:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG - chr2_2:70080322-70080341 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG - chr2_2:70080332-70080351 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG + chr2_2:70080645-70080664 Msa0268130:three_prime_UTR 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG + chr2_2:70080664-70080683 Msa0268130:three_prime_UTR 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG + chr2_2:70080727-70080746 Msa0268130:three_prime_UTR 25.0%
AAAGAACTACGAAAACGTTT+AGG + chr2_2:70078555-70078574 Msa0268130:CDS 30.0%
! TACGAAAACGTTTAGGATTA+GGG + chr2_2:70078562-70078581 Msa0268130:CDS 30.0%
AAAAATAAGCCAATCGAAAC+GGG - chr2_2:70079012-70079031 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG - chr2_2:70079013-70079032 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG + chr2_2:70079188-70079207 Msa0268130:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG - chr2_2:70079205-70079224 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG + chr2_2:70079203-70079222 Msa0268130:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG - chr2_2:70079403-70079422 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG - chr2_2:70079437-70079456 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG - chr2_2:70079438-70079457 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG - chr2_2:70079664-70079683 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG + chr2_2:70079663-70079682 Msa0268130:CDS 30.0%
AATTGAACTAGTTGAACTGT+TGG - chr2_2:70079900-70079919 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG - chr2_2:70080174-70080193 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG - chr2_2:70080186-70080205 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG - chr2_2:70080211-70080230 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG - chr2_2:70080212-70080231 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG + chr2_2:70080242-70080261 Msa0268130:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG + chr2_2:70080272-70080291 Msa0268130:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG + chr2_2:70080497-70080516 Msa0268130:three_prime_UTR 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG + chr2_2:70080498-70080517 Msa0268130:three_prime_UTR 30.0%
TCATTACAAAAACCATTTCC+TGG - chr2_2:70080624-70080643 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG + chr2_2:70080663-70080682 Msa0268130:three_prime_UTR 30.0%
AAAGAACTACGAAAACGTTT+AGG + chr2_2:70078555-70078574 Msa0268130:CDS 30.0%
! TACGAAAACGTTTAGGATTA+GGG + chr2_2:70078562-70078581 Msa0268130:CDS 30.0%
AAAAATAAGCCAATCGAAAC+GGG - chr2_2:70079012-70079031 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG - chr2_2:70079013-70079032 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG + chr2_2:70079188-70079207 Msa0268130:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG - chr2_2:70079205-70079224 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG + chr2_2:70079203-70079222 Msa0268130:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG - chr2_2:70079403-70079422 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG - chr2_2:70079437-70079456 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG - chr2_2:70079438-70079457 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG - chr2_2:70079664-70079683 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG + chr2_2:70079663-70079682 Msa0268130:CDS 30.0%
AATTGAACTAGTTGAACTGT+TGG - chr2_2:70079900-70079919 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG - chr2_2:70080174-70080193 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG - chr2_2:70080186-70080205 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG - chr2_2:70080211-70080230 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG - chr2_2:70080212-70080231 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG + chr2_2:70080242-70080261 Msa0268130:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG + chr2_2:70080272-70080291 Msa0268130:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG + chr2_2:70080497-70080516 Msa0268130:three_prime_UTR 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG + chr2_2:70080498-70080517 Msa0268130:three_prime_UTR 30.0%
TCATTACAAAAACCATTTCC+TGG - chr2_2:70080624-70080643 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG + chr2_2:70080663-70080682 Msa0268130:three_prime_UTR 30.0%
! CTACGAAAACGTTTAGGATT+AGG + chr2_2:70078561-70078580 Msa0268130:CDS 35.0%
TTAGGATTAGGGTTTATCAG+CGG + chr2_2:70078573-70078592 Msa0268130:CDS 35.0%
AAAATCACCATTGTTGCAAG+AGG - chr2_2:70078632-70078651 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG + chr2_2:70078870-70078889 Msa0268130:intron 35.0%
TTATTCGATGCTAAGAAGCT+GGG + chr2_2:70078871-70078890 Msa0268130:intron 35.0%
TAAGGATGTGGTTAAGTTCA+AGG + chr2_2:70079741-70079760 Msa0268130:CDS 35.0%
TAAACACTTGTGAGACTGTT+TGG - chr2_2:70080149-70080168 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG + chr2_2:70080373-70080392 Msa0268130:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG + chr2_2:70080404-70080423 Msa0268130:exon 35.0%
TTCTCATCCAATACCTCTAA+AGG - chr2_2:70080414-70080433 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG + chr2_2:70080418-70080437 Msa0268130:three_prime_UTR 35.0%
AGAGATATAGATCCATTTGG+AGG - chr2_2:70080531-70080550 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG - chr2_2:70080534-70080553 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG + chr2_2:70080536-70080555 Msa0268130:three_prime_UTR 35.0%
ATCTCTCCAAATGGATGAAA+TGG + chr2_2:70080545-70080564 Msa0268130:three_prime_UTR 35.0%
TTCTCTCCATTTCATCCATT+TGG - chr2_2:70080554-70080573 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG + chr2_2:70080561-70080580 Msa0268130:three_prime_UTR 35.0%
! CTACGAAAACGTTTAGGATT+AGG + chr2_2:70078561-70078580 Msa0268130:CDS 35.0%
TTAGGATTAGGGTTTATCAG+CGG + chr2_2:70078573-70078592 Msa0268130:CDS 35.0%
AAAATCACCATTGTTGCAAG+AGG - chr2_2:70078632-70078651 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG + chr2_2:70078870-70078889 Msa0268130:intron 35.0%
TTATTCGATGCTAAGAAGCT+GGG + chr2_2:70078871-70078890 Msa0268130:intron 35.0%
TAAGGATGTGGTTAAGTTCA+AGG + chr2_2:70079741-70079760 Msa0268130:CDS 35.0%
TAAACACTTGTGAGACTGTT+TGG - chr2_2:70080149-70080168 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG + chr2_2:70080373-70080392 Msa0268130:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG + chr2_2:70080404-70080423 Msa0268130:exon 35.0%
TTCTCATCCAATACCTCTAA+AGG - chr2_2:70080414-70080433 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG + chr2_2:70080418-70080437 Msa0268130:three_prime_UTR 35.0%
AGAGATATAGATCCATTTGG+AGG - chr2_2:70080531-70080550 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG - chr2_2:70080534-70080553 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG + chr2_2:70080536-70080555 Msa0268130:three_prime_UTR 35.0%
ATCTCTCCAAATGGATGAAA+TGG + chr2_2:70080545-70080564 Msa0268130:three_prime_UTR 35.0%
TTCTCTCCATTTCATCCATT+TGG - chr2_2:70080554-70080573 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG + chr2_2:70080561-70080580 Msa0268130:three_prime_UTR 35.0%
CTAAGAAGCTGGGTTAAGTT+AGG + chr2_2:70078881-70078900 Msa0268130:intron 40.0%
AGTGAGAATCAAGAGGAGTA+AGG + chr2_2:70079723-70079742 Msa0268130:CDS 40.0%
AATCAAGAGGAGTAAGGATG+TGG + chr2_2:70079729-70079748 Msa0268130:CDS 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG + chr2_2:70079746-70079765 Msa0268130:CDS 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG - chr2_2:70079776-70079795 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG - chr2_2:70079783-70079802 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG - chr2_2:70079844-70079863 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG - chr2_2:70079891-70079910 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG + chr2_2:70080398-70080417 Msa0268130:CDS 40.0%
TTGGATGAGAAATCAAGGAG+AGG + chr2_2:70080423-70080442 Msa0268130:three_prime_UTR 40.0%
AAGGGTAAAGATCCTCCAAA+TGG + chr2_2:70080516-70080535 Msa0268130:three_prime_UTR 40.0%
GAGTTAAGATCCTCTCCATT+TGG - chr2_2:70080579-70080598 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG + chr2_2:70080603-70080622 Msa0268130:three_prime_UTR 40.0%
TTGAGATTGTAGCCAGGAAA+TGG + chr2_2:70080609-70080628 Msa0268130:three_prime_UTR 40.0%
CTAAGAAGCTGGGTTAAGTT+AGG + chr2_2:70078881-70078900 Msa0268130:intron 40.0%
AGTGAGAATCAAGAGGAGTA+AGG + chr2_2:70079723-70079742 Msa0268130:CDS 40.0%
AATCAAGAGGAGTAAGGATG+TGG + chr2_2:70079729-70079748 Msa0268130:CDS 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG + chr2_2:70079746-70079765 Msa0268130:CDS 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG - chr2_2:70079776-70079795 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG - chr2_2:70079783-70079802 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG - chr2_2:70079844-70079863 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG - chr2_2:70079891-70079910 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG + chr2_2:70080398-70080417 Msa0268130:CDS 40.0%
TTGGATGAGAAATCAAGGAG+AGG + chr2_2:70080423-70080442 Msa0268130:three_prime_UTR 40.0%
AAGGGTAAAGATCCTCCAAA+TGG + chr2_2:70080516-70080535 Msa0268130:three_prime_UTR 40.0%
GAGTTAAGATCCTCTCCATT+TGG - chr2_2:70080579-70080598 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG + chr2_2:70080603-70080622 Msa0268130:three_prime_UTR 40.0%
TTGAGATTGTAGCCAGGAAA+TGG + chr2_2:70080609-70080628 Msa0268130:three_prime_UTR 40.0%
! GATTTAGGACCCGTTTCGAT+TGG + chr2_2:70079000-70079019 Msa0268130:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG + chr2_2:70079421-70079440 Msa0268130:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG + chr2_2:70079686-70079705 Msa0268130:CDS 45.0%
TTGAAGCAATCACTTCCTCC+AGG + chr2_2:70079823-70079842 Msa0268130:CDS 45.0%
AAATCCAACTACAGACCTGG+AGG - chr2_2:70079841-70079860 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG - chr2_2:70080207-70080226 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG + chr2_2:70080566-70080585 Msa0268130:three_prime_UTR 45.0%
! GATTTAGGACCCGTTTCGAT+TGG + chr2_2:70079000-70079019 Msa0268130:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG + chr2_2:70079421-70079440 Msa0268130:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG + chr2_2:70079686-70079705 Msa0268130:CDS 45.0%
TTGAAGCAATCACTTCCTCC+AGG + chr2_2:70079823-70079842 Msa0268130:CDS 45.0%
AAATCCAACTACAGACCTGG+AGG - chr2_2:70079841-70079860 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG - chr2_2:70080207-70080226 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG + chr2_2:70080566-70080585 Msa0268130:three_prime_UTR 45.0%
CTCACTGCCTCTTGCAACAA+TGG + chr2_2:70078622-70078641 Msa0268130:CDS 50.0%
CGAGGTCAGTGAGAATCAAG+AGG + chr2_2:70079716-70079735 Msa0268130:CDS 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG + chr2_2:70079834-70079853 Msa0268130:intron 50.0%
CTCACTGCCTCTTGCAACAA+TGG + chr2_2:70078622-70078641 Msa0268130:CDS 50.0%
CGAGGTCAGTGAGAATCAAG+AGG + chr2_2:70079716-70079735 Msa0268130:CDS 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG + chr2_2:70079834-70079853 Msa0268130:intron 50.0%
CCTTCCTTCTGGCAGTGAGA+AGG - chr2_2:70079693-70079712 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG + chr2_2:70079690-70079709 Msa0268130:CDS 55.0%
TGACCTCGCATCCTTCCTTC+TGG - chr2_2:70079704-70079723 None:intergenic 55.0%
CCTTCCTTCTGGCAGTGAGA+AGG - chr2_2:70079693-70079712 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG + chr2_2:70079690-70079709 Msa0268130:CDS 55.0%
TGACCTCGCATCCTTCCTTC+TGG - chr2_2:70079704-70079723 None:intergenic 55.0%
CTGCCAGAAGGAAGGATGCG+AGG + chr2_2:70079698-70079717 Msa0268130:CDS 60.0%
CTGCCAGAAGGAAGGATGCG+AGG + chr2_2:70079698-70079717 Msa0268130:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 70078533 70080783 70078533 ID=Msa0268130;Name=Msa0268130
chr2_2 mRNA 70078533 70080783 70078533 ID=Msa0268130-mRNA-1;Parent=Msa0268130;Name=Msa0268130-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.66|1|1|1|3|366|105
chr2_2 exon 70078533 70078643 70078533 ID=Msa0268130-mRNA-1:exon:22388;Parent=Msa0268130-mRNA-1
chr2_2 exon 70079661 70079844 70079661 ID=Msa0268130-mRNA-1:exon:22389;Parent=Msa0268130-mRNA-1
chr2_2 exon 70080395 70080783 70080395 ID=Msa0268130-mRNA-1:exon:22390;Parent=Msa0268130-mRNA-1
chr2_2 CDS 70078533 70078643 70078533 ID=Msa0268130-mRNA-1:cds;Parent=Msa0268130-mRNA-1
chr2_2 CDS 70079661 70079844 70079661 ID=Msa0268130-mRNA-1:cds;Parent=Msa0268130-mRNA-1
chr2_2 CDS 70080395 70080417 70080395 ID=Msa0268130-mRNA-1:cds;Parent=Msa0268130-mRNA-1
chr2_2 three_prime_UTR 70080418 70080783 70080418 ID=Msa0268130-mRNA-1:three_prime_utr;Parent=Msa0268130-mRNA-1
Gene Sequence

>Msa0268130

ATGGGTATTTTTCGGGGAAATCAAAGAACTACGAAAACGTTTAGGATTAGGGTTTATCAGCGGCAGCAACATTTCACACTTCGTTCGAACTCACTGCCTCTTGCAACAATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACTGCCAGAAGGAAGGATGCGAGGTCAGTGAGAATCAAGAGGAGTAAGGATGTGGTTAAGTTCAAGGTCAGGTGTTCCAAGTACCTCTACACACTTAGTGTGTTTGACGTTGAGAAAGCTGACAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTTTAG

Protein sequence

>Msa0268130

MGIFRGNQRTTKTFRIRVYQRQQHFTLRSNSLPLATMPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLSVFDVEKADKLKQSLPPGLSVQDL*