Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538470 | XP_013455184.1 | 95.128 | 431 | 20 | 1 | 60 | 490 | 125 | 554 | 0.0 | 739 |
| Msa0538470 | XP_013455184.1 | 95.385 | 65 | 3 | 0 | 1 | 65 | 1 | 65 | 2.25e-32 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538470 | sp|F4ISY0|Y2837_ARATH | 43.429 | 525 | 224 | 15 | 2 | 476 | 3 | 504 | 2.64e-98 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538470 | A0A072UHR5 | 95.128 | 431 | 20 | 1 | 60 | 490 | 125 | 554 | 0.0 | 739 |
| Msa0538470 | A0A072UHR5 | 95.385 | 65 | 3 | 0 | 1 | 65 | 1 | 65 | 1.07e-32 | 141 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057420 | Msa0538470 | 0.802317 | 5.942208e-49 | -8.615850e-47 |
| Msa0136650 | Msa0538470 | 0.815386 | 9.496007e-52 | -8.615850e-47 |
| Msa0225460 | Msa0538470 | 0.826808 | 2.213759e-54 | -8.615850e-47 |
| Msa0225680 | Msa0538470 | 0.829683 | 4.486540e-55 | -8.615850e-47 |
| Msa0369790 | Msa0538470 | 0.801774 | 7.683826e-49 | -8.615850e-47 |
| Msa0380620 | Msa0538470 | 0.808009 | 3.823267e-50 | -8.615850e-47 |
| Msa0390970 | Msa0538470 | 0.807846 | 4.139967e-50 | -8.615850e-47 |
| Msa0397150 | Msa0538470 | 0.800527 | 1.382524e-48 | -8.615850e-47 |
| Msa0417880 | Msa0538470 | 0.815553 | 8.714949e-52 | -8.615850e-47 |
| Msa0430260 | Msa0538470 | 0.820328 | 7.269661e-53 | -8.615850e-47 |
| Msa0464000 | Msa0538470 | 0.801799 | 7.592877e-49 | -8.615850e-47 |
| Msa0474730 | Msa0538470 | 0.801091 | 1.060575e-48 | -8.615850e-47 |
| Msa0288890 | Msa0538470 | 0.806776 | 6.980900e-50 | -8.615850e-47 |
| Msa0314340 | Msa0538470 | 0.802840 | 4.635617e-49 | -8.615850e-47 |
| Msa0538470 | Msa0538500 | 0.840982 | 6.263135e-58 | -8.615850e-47 |
| Msa0538470 | Msa0548470 | 0.802073 | 6.669353e-49 | -8.615850e-47 |
| Msa0538470 | Msa0626450 | 0.815615 | 8.443489e-52 | -8.615850e-47 |
| Msa0538470 | Msa0626490 | 0.814627 | 1.398916e-51 | -8.615850e-47 |
| Msa0538470 | Msa0644410 | 0.804362 | 2.240604e-49 | -8.615850e-47 |
| Msa0538470 | Msa0664600 | 0.815554 | 8.709323e-52 | -8.615850e-47 |
| Msa0538470 | Msa0689520 | 0.805131 | 1.548127e-49 | -8.615850e-47 |
| Msa0538470 | Msa0754520 | 0.836928 | 7.019635e-57 | -8.615850e-47 |
| Msa0538470 | Msa0833220 | 0.837972 | 3.791208e-57 | -8.615850e-47 |
| Msa0538470 | Msa0948290 | 0.809020 | 2.325645e-50 | -8.615850e-47 |
| Msa0538470 | Msa0981950 | 0.804015 | 2.646005e-49 | -8.615850e-47 |
| Msa0538470 | Msa1223470 | 0.826049 | 3.358102e-54 | -8.615850e-47 |
| Msa0538470 | Msa1269480 | 0.813326 | 2.708373e-51 | -8.615850e-47 |
| Msa0538470 | Msa1369550 | 0.814320 | 1.635936e-51 | -8.615850e-47 |
| Msa0538470 | Msa1373650 | 0.802575 | 5.256441e-49 | -8.615850e-47 |
| Msa0538470 | Msa1422420 | 0.833628 | 4.780615e-56 | -8.615850e-47 |
| Msa0538470 | Msa1440960 | 0.824390 | 8.285028e-54 | -8.615850e-47 |
| Msa0538470 | Msa1452930 | 0.800738 | 1.252129e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538470 | MtrunA17_Chr4g0013151 | 95.128 | 431 | 20 | 1 | 60 | 490 | 190 | 619 | 0.0 | 738 |
| Msa0538470 | MtrunA17_Chr7g0244501 | 64.130 | 460 | 138 | 11 | 51 | 490 | 118 | 570 | 1.51e-176 | 508 |
| Msa0538470 | MtrunA17_Chr7g0244501 | 33.508 | 191 | 78 | 8 | 11 | 191 | 12 | 163 | 8.75e-12 | 67.4 |
| Msa0538470 | MtrunA17_Chr3g0114551 | 34.989 | 463 | 245 | 8 | 70 | 478 | 136 | 596 | 5.05e-50 | 180 |
| Msa0538470 | MtrunA17_Chr5g0438111 | 34.719 | 409 | 226 | 10 | 89 | 483 | 153 | 534 | 1.45e-37 | 144 |
| Msa0538470 | MtrunA17_Chr3g0133891 | 32.955 | 264 | 172 | 2 | 100 | 359 | 594 | 856 | 5.03e-33 | 133 |
| Msa0538470 | MtrunA17_Chr1g0153431 | 32.075 | 265 | 174 | 2 | 100 | 359 | 575 | 838 | 1.31e-26 | 114 |
| Msa0538470 | MtrunA17_Chr8g0369191 | 30.137 | 292 | 181 | 3 | 100 | 369 | 284 | 574 | 1.50e-18 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538470 | AT2G38370.1 | 43.429 | 525 | 224 | 15 | 2 | 476 | 3 | 504 | 2.69e-99 | 308 |
| Msa0538470 | AT2G38370.2 | 43.429 | 525 | 224 | 15 | 2 | 476 | 20 | 521 | 4.66e-99 | 308 |
| Msa0538470 | AT3G51720.1 | 34.553 | 492 | 180 | 13 | 18 | 476 | 6 | 388 | 6.52e-61 | 205 |
| Msa0538470 | AT2G40480.1 | 35.272 | 533 | 234 | 21 | 5 | 483 | 40 | 515 | 1.59e-52 | 186 |
| Msa0538470 | AT2G26570.1 | 33.887 | 301 | 189 | 4 | 63 | 359 | 435 | 729 | 1.18e-33 | 135 |
| Msa0538470 | AT2G26570.2 | 33.887 | 301 | 189 | 4 | 63 | 359 | 435 | 729 | 1.18e-33 | 135 |
| Msa0538470 | AT4G33390.1 | 35.897 | 273 | 170 | 2 | 100 | 368 | 459 | 730 | 1.54e-27 | 117 |
| Msa0538470 | AT3G56270.1 | 35.152 | 330 | 158 | 9 | 84 | 408 | 142 | 420 | 1.44e-23 | 103 |
| Msa0538470 | AT5G42880.1 | 30.597 | 268 | 157 | 3 | 100 | 360 | 423 | 668 | 4.17e-21 | 97.4 |
| Msa0538470 | AT1G45545.1 | 29.572 | 257 | 173 | 4 | 108 | 358 | 424 | 678 | 1.51e-17 | 86.3 |
| Msa0538470 | AT1G45545.2 | 29.572 | 257 | 173 | 4 | 108 | 358 | 425 | 679 | 1.59e-17 | 86.3 |
Find 93 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAGAACATTTCAAGAAAA+TGG | 0.171368 | 4_1:+17808313 | Msa0538470:CDS |
| TCTCGGTTATTCGACATAAA+TGG | 0.209688 | 4_1:+17808860 | Msa0538470:CDS |
| GGTTCGGTGGTGTTGGTTAT+TGG | 0.246121 | 4_1:+17806603 | Msa0538470:CDS |
| CGAAGCAAATGTATCGAAAA+TGG | 0.273101 | 4_1:+17808634 | Msa0538470:CDS |
| TCTCTGGCATCATCAGTTTC+CGG | 0.279858 | 4_1:-17808952 | None:intergenic |
| TTGAAGAGGCTTTAAGAAAA+TGG | 0.291438 | 4_1:+17808765 | Msa0538470:CDS |
| TCTGCTAAGAGAAAGAAATT+TGG | 0.309514 | 4_1:+17809115 | Msa0538470:CDS |
| CGGTTCACTACCACCGTATC+AGG | 0.320483 | 4_1:-17806494 | None:intergenic |
| TGTTGTGTTGTGAAGTGTTT+AGG | 0.342052 | 4_1:-17806421 | None:intergenic |
| AAGAGAAAGAAATTTGGTTT+TGG | 0.353841 | 4_1:+17809121 | Msa0538470:CDS |
| CCTGCAGTTTAAGTCTTGTT+TGG | 0.360526 | 4_1:-17808211 | None:intergenic |
| GAAGGCTCTTGAAGAAGCTT+TGG | 0.361979 | 4_1:+17808706 | Msa0538470:CDS |
| GCAGAATTTGTGTGATGATA+AGG | 0.369186 | 4_1:+17807926 | Msa0538470:intron |
| TAAACCTGGATTCGCCGAAT+TGG | 0.369316 | 4_1:-17808003 | None:intergenic |
| TTGAAGCTCTTTCGTAATAT+CGG | 0.374582 | 4_1:-17808276 | None:intergenic |
| GGTAGTGAACCGGGTTGAAC+CGG | 0.379917 | 4_1:+17806505 | Msa0538470:CDS |
| CTCGGCAAGTGCAGCTGCTT+CGG | 0.385931 | 4_1:-17808459 | None:intergenic |
| AGTCGGCTTTAGAACTGGTT+TGG | 0.412171 | 4_1:-17808906 | None:intergenic |
| CAGCGATATCGTTTGTTGTT+CGG | 0.413542 | 4_1:-17808064 | None:intergenic |
| CTGATACGGTGGTAGTGAAC+CGG | 0.418453 | 4_1:+17806495 | Msa0538470:CDS |
| TGACGGGGATTGTGTGGAAA+AGG | 0.419671 | 4_1:+17808502 | Msa0538470:CDS |
| CCTTCCAATTCGGCGAATCC+AGG | 0.426962 | 4_1:+17807999 | Msa0538470:CDS |
| CTCTATGGAAATTCCTGATA+CGG | 0.430164 | 4_1:+17806481 | Msa0538470:exon |
| CTCGGTTATTCGACATAAAT+GGG | 0.433140 | 4_1:+17808861 | Msa0538470:CDS |
| AAAGAAGCTGTTACTCGGTT+CGG | 0.446194 | 4_1:+17806587 | Msa0538470:CDS |
| GATAGAGTCGGCTTTAGAAC+TGG | 0.446529 | 4_1:-17808911 | None:intergenic |
| GCAGAACATTTCAAGAAAAT+GGG | 0.446538 | 4_1:+17808314 | Msa0538470:CDS |
| TGCCTATCAAATTCAAAAGA+TGG | 0.449343 | 4_1:-17809061 | None:intergenic |
| AAGCGTTATCTTATTATGAC+GGG | 0.457886 | 4_1:+17808486 | Msa0538470:CDS |
| ACGAAAGAATCTCGATGAAA+AGG | 0.462368 | 4_1:+17808996 | Msa0538470:CDS |
| CATCACCTCAAGTTCAAAGT+TGG | 0.465116 | 4_1:-17809187 | None:intergenic |
| ATCCCACCTTCAAACTTCTC+TGG | 0.472004 | 4_1:-17808968 | None:intergenic |
| GTTACTCGGTTCGGTGGTGT+TGG | 0.473117 | 4_1:+17806596 | Msa0538470:CDS |
| AGAGTAGAGGCTGCAAATAG+AGG | 0.481776 | 4_1:+17808731 | Msa0538470:CDS |
| CTATTATTATGATTAAGAAC+AGG | 0.482857 | 4_1:-17806629 | None:intergenic |
| AAGTCGTGTTCCTTCCAATT+CGG | 0.489945 | 4_1:+17807989 | Msa0538470:CDS |
| AGGGAAGTTAGTAGTTGAAG+AGG | 0.491762 | 4_1:+17808751 | Msa0538470:CDS |
| TATTAACCTCATTATTCCTC+AGG | 0.502714 | 4_1:+17806658 | Msa0538470:CDS |
| AATTCCCTTAAAATTAAACC+TGG | 0.505484 | 4_1:-17808017 | None:intergenic |
| GATGAAAAGGAAAGTGTCGT+TGG | 0.508711 | 4_1:+17809009 | Msa0538470:CDS |
| GACGGGGATTGTGTGGAAAA+GGG | 0.509570 | 4_1:+17808503 | Msa0538470:CDS |
| GAATATCACTCGAGAAAACC+AGG | 0.513568 | 4_1:+17808135 | Msa0538470:CDS |
| ATTCTGAGTTAAACTCTCCC+TGG | 0.516756 | 4_1:-17808153 | None:intergenic |
| TGGAAGGAACACGACTTCCA+TGG | 0.528830 | 4_1:-17807983 | None:intergenic |
| AAAGCGTTATCTTATTATGA+CGG | 0.532017 | 4_1:+17808485 | Msa0538470:CDS |
| CCTTCGAACCCGGTTCAACC+CGG | 0.532037 | 4_1:-17806514 | None:intergenic |
| CTGTTAAAGAAGCTGTTACT+CGG | 0.535629 | 4_1:+17806582 | Msa0538470:CDS |
| GGCAAGTGCAGCTGCTTCGG+CGG | 0.535980 | 4_1:-17808456 | None:intergenic |
| CCGGGTTGAACCGGGTTCGA+AGG | 0.536423 | 4_1:+17806514 | Msa0538470:CDS |
| GAACCGGGTTCGAAGGAAAA+CGG | 0.537312 | 4_1:+17806521 | Msa0538470:CDS |
| ATGAAAAGGAAAGTGTCGTT+GGG | 0.538173 | 4_1:+17809010 | Msa0538470:CDS |
| AGCTTCTTCGATAGTGAGAA+GGG | 0.538244 | 4_1:-17808838 | None:intergenic |
| TTTCTTGAAATGTTCTGCCT+CGG | 0.538325 | 4_1:-17808309 | None:intergenic |
| CGCTGATGTTCGAGTTTCCG+TGG | 0.539445 | 4_1:+17808082 | Msa0538470:CDS |
| GCTTCTTTAACAGACTCAAA+CGG | 0.540992 | 4_1:-17806572 | None:intergenic |
| CGATAGGTCAAATATTGAGC+CGG | 0.541111 | 4_1:+17808933 | Msa0538470:CDS |
| GATTGTGTGGAAAAGGGTGA+TGG | 0.543909 | 4_1:+17808509 | Msa0538470:CDS |
| TTTCTTGTTGAGTGATTCCA+CGG | 0.545510 | 4_1:-17808099 | None:intergenic |
| AGAAGCCAACTTTGAACTTG+AGG | 0.546691 | 4_1:+17809182 | Msa0538470:CDS |
| GGCGATCCGAGGGTAACAAA+AGG | 0.547667 | 4_1:+17808786 | Msa0538470:CDS |
| GAGTAGAGGCTGCAAATAGA+GGG | 0.556599 | 4_1:+17808732 | Msa0538470:CDS |
| GTGTCGTTGGGTCAGATGCT+TGG | 0.562470 | 4_1:+17809022 | Msa0538470:CDS |
| TAGAGCATTATACTCTTCAA+AGG | 0.563624 | 4_1:-17808543 | None:intergenic |
| AGCTCTTTCGTAATATCGGA+AGG | 0.563753 | 4_1:-17808272 | None:intergenic |
| CGAAGTTAAAACAAGCAAGA+AGG | 0.565482 | 4_1:+17808688 | Msa0538470:CDS |
| GAGCTTCTTCGATAGTGAGA+AGG | 0.567321 | 4_1:-17808839 | None:intergenic |
| CCTGGATTCGCCGAATTGGA+AGG | 0.568328 | 4_1:-17807999 | None:intergenic |
| TAAATACCTGAGGAATAATG+AGG | 0.573109 | 4_1:-17806664 | None:intergenic |
| GTAGTGAACCGGGTTGAACC+GGG | 0.579200 | 4_1:+17806506 | Msa0538470:CDS |
| TTATTATGACGGGGATTGTG+TGG | 0.580473 | 4_1:+17808496 | Msa0538470:CDS |
| AGAAGCTTTGGAAAGAGTAG+AGG | 0.581826 | 4_1:+17808718 | Msa0538470:CDS |
| TGATACGGTGGTAGTGAACC+GGG | 0.582029 | 4_1:+17806496 | Msa0538470:CDS |
| GATGAAGAAAAGGAAAACCA+TGG | 0.590053 | 4_1:+17807966 | Msa0538470:CDS |
| CTCACTATCGAAGAAGCTCT+CGG | 0.599628 | 4_1:+17808843 | Msa0538470:CDS |
| ATGCCAGAGAAGTTTGAAGG+TGG | 0.600167 | 4_1:+17808965 | Msa0538470:CDS |
| ATTTGACCTATCGATAGAGT+CGG | 0.604595 | 4_1:-17808923 | None:intergenic |
| CTAAAGCCGACTCTATCGAT+AGG | 0.608619 | 4_1:+17808917 | Msa0538470:CDS |
| TATGGAAATTCCTGATACGG+TGG | 0.612604 | 4_1:+17806484 | Msa0538470:exon |
| TTTAAGAAAATGGCGATCCG+AGG | 0.618775 | 4_1:+17808775 | Msa0538470:CDS |
| ATGATGCCAGAGAAGTTTGA+AGG | 0.619171 | 4_1:+17808962 | Msa0538470:CDS |
| CCAAACAAGACTTAAACTGC+AGG | 0.619705 | 4_1:+17808211 | Msa0538470:CDS |
| GAAGCTGTTACTCGGTTCGG+TGG | 0.622084 | 4_1:+17806590 | Msa0538470:CDS |
| TTAAGAAAATGGCGATCCGA+GGG | 0.633233 | 4_1:+17808776 | Msa0538470:CDS |
| TCTAACATGCAAAGCTCGAG+AGG | 0.633623 | 4_1:+17808562 | Msa0538470:CDS |
| AAGTGAAAGTGAAAGTGCAA+CGG | 0.637199 | 4_1:-17806390 | None:intergenic |
| AACAAGACTTAAACTGCAGG+TGG | 0.640787 | 4_1:+17808214 | Msa0538470:CDS |
| ACTCAACAAGAAACTTCAGA+AGG | 0.651200 | 4_1:+17808109 | Msa0538470:CDS |
| AAAGAAGCTGAAATTGAATG+TGG | 0.654834 | 4_1:+17808239 | Msa0538470:CDS |
| GCTTCAACGATTGAGTTCCG+AGG | 0.676528 | 4_1:+17808292 | Msa0538470:CDS |
| AGCGTTATCTTATTATGACG+GGG | 0.681282 | 4_1:+17808487 | Msa0538470:CDS |
| GAAGGAAAACGGTTTAAGAG+CGG | 0.692043 | 4_1:+17806532 | Msa0538470:CDS |
| AATATCACTCGAGAAAACCA+GGG | 0.694657 | 4_1:+17808136 | Msa0538470:CDS |
| TGCCAGAGAAGTTTGAAGGT+GGG | 0.696821 | 4_1:+17808966 | Msa0538470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTTATTTTTTAT+AGG | + | chr4_1:17806785-17806804 | Msa0538470:intron | 0.0% |
| !! | ACAAGAAAATAAAAATAAAA+AGG | - | chr4_1:17806448-17806467 | None:intergenic | 10.0% |
| !!! | TTATTTTTATTTTTTATAGG+TGG | + | chr4_1:17806788-17806807 | Msa0538470:intron | 10.0% |
| !!! | TTGTGTATTTTTTTAATTTT+AGG | + | chr4_1:17806838-17806857 | Msa0538470:intron | 10.0% |
| !! | TCATATGAAAATAATATATT+TGG | + | chr4_1:17806955-17806974 | Msa0538470:intron | 10.0% |
| !! | TGAAAATAATATATTTGGAT+AGG | + | chr4_1:17806960-17806979 | Msa0538470:intron | 15.0% |
| !! | ATACATTCATTGAAAAAATA+GGG | - | chr4_1:17807386-17807405 | None:intergenic | 15.0% |
| !! | CTATTATTATGATTAAGAAC+AGG | - | chr4_1:17806632-17806651 | None:intergenic | 20.0% |
| !! | AACATAAAAATAAATACCTG+AGG | - | chr4_1:17806677-17806696 | None:intergenic | 20.0% |
| !!! | TTTTTAATTTTAGGAAGACT+TGG | + | chr4_1:17806847-17806866 | Msa0538470:intron | 20.0% |
| !! | CATACATTCATTGAAAAAAT+AGG | - | chr4_1:17807387-17807406 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAAAAACACA+AGG | - | chr4_1:17807596-17807615 | None:intergenic | 20.0% |
| !!! | CCTTGTGTTTTTTTTTTTTT+TGG | + | chr4_1:17807593-17807612 | Msa0538470:intron | 20.0% |
| !!! | TTTTGGATTTCATACTTTTT+TGG | + | chr4_1:17807610-17807629 | Msa0538470:intron | 20.0% |
| !!! | TTTGGATTTCATACTTTTTT+GGG | + | chr4_1:17807611-17807630 | Msa0538470:intron | 20.0% |
| !!! | GAAAATGGATGTTTTAAAAA+GGG | + | chr4_1:17808649-17808668 | Msa0538470:CDS | 20.0% |
| ! | AAATTAGTTAAAGCGATTTC+TGG | + | chr4_1:17806878-17806897 | Msa0538470:intron | 25.0% |
| ! | AAATATGATCCATATGATGA+TGG | + | chr4_1:17807006-17807025 | Msa0538470:intron | 25.0% |
| ! | ATATTCTCTTTCTAACTATG+TGG | - | chr4_1:17807181-17807200 | None:intergenic | 25.0% |
| !! | TTTTACCATGATTATTACAG+TGG | + | chr4_1:17807358-17807377 | Msa0538470:intron | 25.0% |
| ! | AATATCAAGATTCAAAGCAT+AGG | - | chr4_1:17807441-17807460 | None:intergenic | 25.0% |
| !!! | TTGGATTTCATACTTTTTTG+GGG | + | chr4_1:17807612-17807631 | Msa0538470:intron | 25.0% |
| !!! | TCTTGATGTTTTAAAAGAGT+TGG | + | chr4_1:17807818-17807837 | Msa0538470:intron | 25.0% |
| ! | GAAAAAAGAAGATGAAGAAA+AGG | + | chr4_1:17807956-17807975 | Msa0538470:CDS | 25.0% |
| !!! | GAATCCAGGTTTAATTTTAA+GGG | + | chr4_1:17808013-17808032 | Msa0538470:CDS | 25.0% |
| ! | AATTCCCTTAAAATTAAACC+TGG | - | chr4_1:17808020-17808039 | None:intergenic | 25.0% |
| ! | TTCAAAAATAACTTCACTAG+AGG | + | chr4_1:17808178-17808197 | Msa0538470:CDS | 25.0% |
| !! | ATAAGATAACGCTTTTATCT+CGG | - | chr4_1:17808480-17808499 | None:intergenic | 25.0% |
| !! | AAAGCGTTATCTTATTATGA+CGG | + | chr4_1:17808485-17808504 | Msa0538470:CDS | 25.0% |
| !!! | CGAAAATGGATGTTTTAAAA+AGG | + | chr4_1:17808648-17808667 | Msa0538470:CDS | 25.0% |
| !! | ATCCATCTTTTGAATTTGAT+AGG | + | chr4_1:17809059-17809078 | Msa0538470:CDS | 25.0% |
| !!! | AAGAGAAAGAAATTTGGTTT+TGG | + | chr4_1:17809121-17809140 | Msa0538470:CDS | 25.0% |
| ! | GTCTTCTTTCTTTTTCTCTA+TGG | + | chr4_1:17806466-17806485 | Msa0538470:exon | 30.0% |
| TATTAACCTCATTATTCCTC+AGG | + | chr4_1:17806658-17806677 | Msa0538470:CDS | 30.0% | |
| TAAATACCTGAGGAATAATG+AGG | - | chr4_1:17806667-17806686 | None:intergenic | 30.0% | |
| ! | GGAAGTATATTCTGGTAATT+CGG | + | chr4_1:17807050-17807069 | Msa0538470:intron | 30.0% |
| TATGAATTATGAATGCTCTC+TGG | + | chr4_1:17807198-17807217 | Msa0538470:intron | 30.0% | |
| ! | GTAACTGCAATTTTGAATCA+CGG | - | chr4_1:17807417-17807436 | None:intergenic | 30.0% |
| ! | TGCTTTGAATCTTGATATTG+TGG | + | chr4_1:17807442-17807461 | Msa0538470:intron | 30.0% |
| ! | TTTTCACAAAACCAAAACTG+CGG | - | chr4_1:17807497-17807516 | None:intergenic | 30.0% |
| !!! | TGGATTTCATACTTTTTTGG+GGG | + | chr4_1:17807613-17807632 | Msa0538470:intron | 30.0% |
| AAGAGCTTATCGTTAAAGAA+AGG | + | chr4_1:17807790-17807809 | Msa0538470:intron | 30.0% | |
| AGAGCTTATCGTTAAAGAAA+GGG | + | chr4_1:17807791-17807810 | Msa0538470:intron | 30.0% | |
| TGAGGCAAATTTGAACATTA+AGG | + | chr4_1:17807899-17807918 | Msa0538470:intron | 30.0% | |
| !! | CGAATCCAGGTTTAATTTTA+AGG | + | chr4_1:17808012-17808031 | Msa0538470:CDS | 30.0% |
| AAAGAAGCTGAAATTGAATG+TGG | + | chr4_1:17808239-17808258 | Msa0538470:CDS | 30.0% | |
| TTGAAGCTCTTTCGTAATAT+CGG | - | chr4_1:17808279-17808298 | None:intergenic | 30.0% | |
| GCAGAACATTTCAAGAAAAT+GGG | + | chr4_1:17808314-17808333 | Msa0538470:CDS | 30.0% | |
| AAGCGTTATCTTATTATGAC+GGG | + | chr4_1:17808486-17808505 | Msa0538470:CDS | 30.0% | |
| ! | TAGAGCATTATACTCTTCAA+AGG | - | chr4_1:17808546-17808565 | None:intergenic | 30.0% |
| !! | TTGAAGAGGCTTTAAGAAAA+TGG | + | chr4_1:17808765-17808784 | Msa0538470:CDS | 30.0% |
| TGCCTATCAAATTCAAAAGA+TGG | - | chr4_1:17809064-17809083 | None:intergenic | 30.0% | |
| TCTGCTAAGAGAAAGAAATT+TGG | + | chr4_1:17809115-17809134 | Msa0538470:CDS | 30.0% | |
| ! | AAGTGAAAGTGAAAGTGCAA+CGG | - | chr4_1:17806393-17806412 | None:intergenic | 35.0% |
| ! | TGTTGTGTTGTGAAGTGTTT+AGG | - | chr4_1:17806424-17806443 | None:intergenic | 35.0% |
| CTCTATGGAAATTCCTGATA+CGG | + | chr4_1:17806481-17806500 | Msa0538470:exon | 35.0% | |
| GCTTCTTTAACAGACTCAAA+CGG | - | chr4_1:17806575-17806594 | None:intergenic | 35.0% | |
| CTGTTAAAGAAGCTGTTACT+CGG | + | chr4_1:17806582-17806601 | Msa0538470:CDS | 35.0% | |
| TAGGTGGTTGTTTGTGATTT+CGG | + | chr4_1:17806804-17806823 | Msa0538470:intron | 35.0% | |
| !! | ATTTTAGGAAGACTTGGATC+TGG | + | chr4_1:17806853-17806872 | Msa0538470:intron | 35.0% |
| TTTGGATAGGCAAATGTTTG+TGG | + | chr4_1:17806973-17806992 | Msa0538470:intron | 35.0% | |
| !! | TATGATCCATATGATGATGG+TGG | + | chr4_1:17807009-17807028 | Msa0538470:intron | 35.0% |
| TATTCTGGTAATTCGGAGTT+AGG | + | chr4_1:17807057-17807076 | Msa0538470:intron | 35.0% | |
| TTTCTATGTGGAACAACTCT+AGG | - | chr4_1:17807095-17807114 | None:intergenic | 35.0% | |
| GTTCCAAATCATTCGTCATT+AGG | + | chr4_1:17807128-17807147 | Msa0538470:intron | 35.0% | |
| CTTGATATTGTGGCAAAATG+CGG | + | chr4_1:17807452-17807471 | Msa0538470:intron | 35.0% | |
| CCACAACATAAACATCTTAG+AGG | - | chr4_1:17807520-17807539 | None:intergenic | 35.0% | |
| !! | CCTCTAAGATGTTTATGTTG+TGG | + | chr4_1:17807517-17807536 | Msa0538470:intron | 35.0% |
| !!! | TTTTGGGGGTATTTTCTTTC+TGG | + | chr4_1:17807627-17807646 | Msa0538470:intron | 35.0% |
| !! | AAGAGTTGGAAAGTACCAAA+AGG | + | chr4_1:17807832-17807851 | Msa0538470:intron | 35.0% |
| ! | CAGATTTTCAACAAGCCTTT+TGG | - | chr4_1:17807850-17807869 | None:intergenic | 35.0% |
| GCAGAATTTGTGTGATGATA+AGG | + | chr4_1:17807926-17807945 | Msa0538470:intron | 35.0% | |
| GATGAAGAAAAGGAAAACCA+TGG | + | chr4_1:17807966-17807985 | Msa0538470:CDS | 35.0% | |
| TTTCTTGTTGAGTGATTCCA+CGG | - | chr4_1:17808102-17808121 | None:intergenic | 35.0% | |
| ACTCAACAAGAAACTTCAGA+AGG | + | chr4_1:17808109-17808128 | Msa0538470:CDS | 35.0% | |
| AATATCACTCGAGAAAACCA+GGG | + | chr4_1:17808136-17808155 | Msa0538470:CDS | 35.0% | |
| TTTCTTGAAATGTTCTGCCT+CGG | - | chr4_1:17808312-17808331 | None:intergenic | 35.0% | |
| GGCAGAACATTTCAAGAAAA+TGG | + | chr4_1:17808313-17808332 | Msa0538470:CDS | 35.0% | |
| AAAAATGAAGGAAGCTGCTA+GGG | + | chr4_1:17808433-17808452 | Msa0538470:CDS | 35.0% | |
| AGCGTTATCTTATTATGACG+GGG | + | chr4_1:17808487-17808506 | Msa0538470:CDS | 35.0% | |
| CGAAGCAAATGTATCGAAAA+TGG | + | chr4_1:17808634-17808653 | Msa0538470:CDS | 35.0% | |
| CGAAGTTAAAACAAGCAAGA+AGG | + | chr4_1:17808688-17808707 | Msa0538470:CDS | 35.0% | |
| TCTCGGTTATTCGACATAAA+TGG | + | chr4_1:17808860-17808879 | Msa0538470:CDS | 35.0% | |
| CTCGGTTATTCGACATAAAT+GGG | + | chr4_1:17808861-17808880 | Msa0538470:CDS | 35.0% | |
| ATTTGACCTATCGATAGAGT+CGG | - | chr4_1:17808926-17808945 | None:intergenic | 35.0% | |
| ACGAAAGAATCTCGATGAAA+AGG | + | chr4_1:17808996-17809015 | Msa0538470:CDS | 35.0% | |
| !! | ATGAAAAGGAAAGTGTCGTT+GGG | + | chr4_1:17809010-17809029 | Msa0538470:CDS | 35.0% |
| TATGGAAATTCCTGATACGG+TGG | + | chr4_1:17806484-17806503 | Msa0538470:exon | 40.0% | |
| GAAGGAAAACGGTTTAAGAG+CGG | + | chr4_1:17806532-17806551 | Msa0538470:CDS | 40.0% | |
| AAAGAAGCTGTTACTCGGTT+CGG | + | chr4_1:17806587-17806606 | Msa0538470:CDS | 40.0% | |
| AGGTGGTTGTTTGTGATTTC+GGG | + | chr4_1:17806805-17806824 | Msa0538470:intron | 40.0% | |
| TAGGCAAATGTTTGTGGCTT+TGG | + | chr4_1:17806979-17806998 | Msa0538470:intron | 40.0% | |
| !! | GTGGTGGTTGTTATTTCCTA+GGG | + | chr4_1:17807028-17807047 | Msa0538470:intron | 40.0% |
| !! | TGGTGGTTGTTATTTCCTAG+GGG | + | chr4_1:17807029-17807048 | Msa0538470:intron | 40.0% |
| ! | TTCCTAGGGGAAGTATATTC+TGG | + | chr4_1:17807042-17807061 | Msa0538470:intron | 40.0% |
| TACCAGAATATACTTCCCCT+AGG | - | chr4_1:17807047-17807066 | None:intergenic | 40.0% | |
| ACTCGAGTTCGATTTCTATG+TGG | - | chr4_1:17807107-17807126 | None:intergenic | 40.0% | |
| CCACCTAATGACGAATGATT+TGG | - | chr4_1:17807134-17807153 | None:intergenic | 40.0% | |
| CCAAATCATTCGTCATTAGG+TGG | + | chr4_1:17807131-17807150 | Msa0538470:intron | 40.0% | |
| ACTATGTGGTTAGACTCAAG+TGG | - | chr4_1:17807167-17807186 | None:intergenic | 40.0% | |
| ! | ATCGAAGGAGTTCTAACTAG+AGG | - | chr4_1:17807225-17807244 | None:intergenic | 40.0% |
| TACCAACCTAGTTGTCTGTT+TGG | + | chr4_1:17807259-17807278 | Msa0538470:intron | 40.0% | |
| ACCAACCTAGTTGTCTGTTT+GGG | + | chr4_1:17807260-17807279 | Msa0538470:intron | 40.0% | |
| AGAGCTTGATGCTGGAAAAT+TGG | + | chr4_1:17807743-17807762 | Msa0538470:intron | 40.0% | |
| AAAATTGGAGGAACAAGCAG+TGG | + | chr4_1:17807758-17807777 | Msa0538470:intron | 40.0% | |
| ACAAGCAGAAGAAGAATCTG+AGG | + | chr4_1:17807881-17807900 | Msa0538470:intron | 40.0% | |
| AAGTCGTGTTCCTTCCAATT+CGG | + | chr4_1:17807989-17808008 | Msa0538470:CDS | 40.0% | |
| !! | CAGCGATATCGTTTGTTGTT+CGG | - | chr4_1:17808067-17808086 | None:intergenic | 40.0% |
| GAATATCACTCGAGAAAACC+AGG | + | chr4_1:17808135-17808154 | Msa0538470:CDS | 40.0% | |
| ATTCTGAGTTAAACTCTCCC+TGG | - | chr4_1:17808156-17808175 | None:intergenic | 40.0% | |
| !! | CCTGCAGTTTAAGTCTTGTT+TGG | - | chr4_1:17808214-17808233 | None:intergenic | 40.0% |
| CCAAACAAGACTTAAACTGC+AGG | + | chr4_1:17808211-17808230 | Msa0538470:CDS | 40.0% | |
| AACAAGACTTAAACTGCAGG+TGG | + | chr4_1:17808214-17808233 | Msa0538470:CDS | 40.0% | |
| AGCTCTTTCGTAATATCGGA+AGG | - | chr4_1:17808275-17808294 | None:intergenic | 40.0% | |
| AGTTGCTGCTCGAAAAATGA+AGG | + | chr4_1:17808421-17808440 | Msa0538470:CDS | 40.0% | |
| GAAAAATGAAGGAAGCTGCT+AGG | + | chr4_1:17808432-17808451 | Msa0538470:CDS | 40.0% | |
| ! | TTATTATGACGGGGATTGTG+TGG | + | chr4_1:17808496-17808515 | Msa0538470:CDS | 40.0% |
| !! | AGAAGCTTTGGAAAGAGTAG+AGG | + | chr4_1:17808718-17808737 | Msa0538470:CDS | 40.0% |
| AGGGAAGTTAGTAGTTGAAG+AGG | + | chr4_1:17808751-17808770 | Msa0538470:CDS | 40.0% | |
| TTTAAGAAAATGGCGATCCG+AGG | + | chr4_1:17808775-17808794 | Msa0538470:CDS | 40.0% | |
| TTAAGAAAATGGCGATCCGA+GGG | + | chr4_1:17808776-17808795 | Msa0538470:CDS | 40.0% | |
| AGCTTCTTCGATAGTGAGAA+GGG | - | chr4_1:17808841-17808860 | None:intergenic | 40.0% | |
| CGATAGGTCAAATATTGAGC+CGG | + | chr4_1:17808933-17808952 | Msa0538470:CDS | 40.0% | |
| ATGATGCCAGAGAAGTTTGA+AGG | + | chr4_1:17808962-17808981 | Msa0538470:CDS | 40.0% | |
| !! | GATGAAAAGGAAAGTGTCGT+TGG | + | chr4_1:17809009-17809028 | Msa0538470:CDS | 40.0% |
| AGAAGCCAACTTTGAACTTG+AGG | + | chr4_1:17809182-17809201 | Msa0538470:CDS | 40.0% | |
| ! | AAACCGTTTTCCTTCGAACC+CGG | - | chr4_1:17806527-17806546 | None:intergenic | 45.0% |
| !! | GATCCATATGATGATGGTGG+TGG | + | chr4_1:17807012-17807031 | Msa0538470:intron | 45.0% |
| CAACCACCACCATCATCATA+TGG | - | chr4_1:17807018-17807037 | None:intergenic | 45.0% | |
| !! | GGTGGTGGTTGTTATTTCCT+AGG | + | chr4_1:17807027-17807046 | Msa0538470:intron | 45.0% |
| ACAACTCTAGGTCAGACTTC+CGG | - | chr4_1:17807083-17807102 | None:intergenic | 45.0% | |
| !! | AACTAGGTTGGTAGTGAGCT+GGG | - | chr4_1:17807252-17807271 | None:intergenic | 45.0% |
| TCCCAAACAGACAACTAGGT+TGG | - | chr4_1:17807264-17807283 | None:intergenic | 45.0% | |
| TTCGTCCCAAACAGACAACT+AGG | - | chr4_1:17807268-17807287 | None:intergenic | 45.0% | |
| ! | TTGTCTGTTTGGGACGAATG+TGG | + | chr4_1:17807270-17807289 | Msa0538470:intron | 45.0% |
| GGGAGCCACTGTAATAATCA+TGG | - | chr4_1:17807366-17807385 | None:intergenic | 45.0% | |
| CACAAAACCAAAACTGCGGT+TGG | - | chr4_1:17807493-17807512 | None:intergenic | 45.0% | |
| AACACAGAAGAGCTTGATGC+TGG | + | chr4_1:17807735-17807754 | Msa0538470:intron | 45.0% | |
| GCTTGATGCTGGAAAATTGG+AGG | + | chr4_1:17807746-17807765 | Msa0538470:intron | 45.0% | |
| TAAACCTGGATTCGCCGAAT+TGG | - | chr4_1:17808006-17808025 | None:intergenic | 45.0% | |
| GATTGTGTGGAAAAGGGTGA+TGG | + | chr4_1:17808509-17808528 | Msa0538470:CDS | 45.0% | |
| TCTAACATGCAAAGCTCGAG+AGG | + | chr4_1:17808562-17808581 | Msa0538470:CDS | 45.0% | |
| GAAGGCTCTTGAAGAAGCTT+TGG | + | chr4_1:17808706-17808725 | Msa0538470:CDS | 45.0% | |
| AGAGTAGAGGCTGCAAATAG+AGG | + | chr4_1:17808731-17808750 | Msa0538470:CDS | 45.0% | |
| GAGTAGAGGCTGCAAATAGA+GGG | + | chr4_1:17808732-17808751 | Msa0538470:CDS | 45.0% | |
| ! | TGATCGCCTTTTGTTACCCT+CGG | - | chr4_1:17808795-17808814 | None:intergenic | 45.0% |
| GAGCTTCTTCGATAGTGAGA+AGG | - | chr4_1:17808842-17808861 | None:intergenic | 45.0% | |
| CTCACTATCGAAGAAGCTCT+CGG | + | chr4_1:17808843-17808862 | Msa0538470:CDS | 45.0% | |
| !! | AGTCGGCTTTAGAACTGGTT+TGG | - | chr4_1:17808909-17808928 | None:intergenic | 45.0% |
| !! | GATAGAGTCGGCTTTAGAAC+TGG | - | chr4_1:17808914-17808933 | None:intergenic | 45.0% |
| ! | CTAAAGCCGACTCTATCGAT+AGG | + | chr4_1:17808917-17808936 | Msa0538470:CDS | 45.0% |
| TCTCTGGCATCATCAGTTTC+CGG | - | chr4_1:17808955-17808974 | None:intergenic | 45.0% | |
| ATGCCAGAGAAGTTTGAAGG+TGG | + | chr4_1:17808965-17808984 | Msa0538470:CDS | 45.0% | |
| TGCCAGAGAAGTTTGAAGGT+GGG | + | chr4_1:17808966-17808985 | Msa0538470:CDS | 45.0% | |
| ATCCCACCTTCAAACTTCTC+TGG | - | chr4_1:17808971-17808990 | None:intergenic | 45.0% | |
| !!! | AAAAAAATATTGTATTATTT+TGG | + | chr4_1:17806759-17806778 | Msa0538470:intron | 5.0% |
| ! | CTGATACGGTGGTAGTGAAC+CGG | + | chr4_1:17806495-17806514 | Msa0538470:CDS | 50.0% |
| ! | TGATACGGTGGTAGTGAACC+GGG | + | chr4_1:17806496-17806515 | Msa0538470:CDS | 50.0% |
| GAACCGGGTTCGAAGGAAAA+CGG | + | chr4_1:17806521-17806540 | Msa0538470:CDS | 50.0% | |
| !! | GGTTCGGTGGTGTTGGTTAT+TGG | + | chr4_1:17806603-17806622 | Msa0538470:CDS | 50.0% |
| CTGGTAATTCGGAGTTAGGC+CGG | + | chr4_1:17807061-17807080 | Msa0538470:intron | 50.0% | |
| !! | ACTAGGTTGGTAGTGAGCTG+GGG | - | chr4_1:17807251-17807270 | None:intergenic | 50.0% |
| !! | CAACTAGGTTGGTAGTGAGC+TGG | - | chr4_1:17807253-17807272 | None:intergenic | 50.0% |
| ! | GATCGTTCCAACCGCAGTTT+TGG | + | chr4_1:17807483-17807502 | Msa0538470:intron | 50.0% |
| GGAGGAACAAGCAGTGGAAT+TGG | + | chr4_1:17807764-17807783 | Msa0538470:intron | 50.0% | |
| TGGAAGGAACACGACTTCCA+TGG | - | chr4_1:17807986-17808005 | None:intergenic | 50.0% | |
| GCTTCAACGATTGAGTTCCG+AGG | + | chr4_1:17808292-17808311 | Msa0538470:CDS | 50.0% | |
| TGACGGGGATTGTGTGGAAA+AGG | + | chr4_1:17808502-17808521 | Msa0538470:CDS | 50.0% | |
| GACGGGGATTGTGTGGAAAA+GGG | + | chr4_1:17808503-17808522 | Msa0538470:CDS | 50.0% | |
| CGGTTCACTACCACCGTATC+AGG | - | chr4_1:17806497-17806516 | None:intergenic | 55.0% | |
| ! | GGTAGTGAACCGGGTTGAAC+CGG | + | chr4_1:17806505-17806524 | Msa0538470:CDS | 55.0% |
| ! | GTAGTGAACCGGGTTGAACC+GGG | + | chr4_1:17806506-17806525 | Msa0538470:CDS | 55.0% |
| !! | GAAGCTGTTACTCGGTTCGG+TGG | + | chr4_1:17806590-17806609 | Msa0538470:CDS | 55.0% |
| !! | GTTACTCGGTTCGGTGGTGT+TGG | + | chr4_1:17806596-17806615 | Msa0538470:CDS | 55.0% |
| AGTGAGCTGGGGAACATCGA+AGG | - | chr4_1:17807240-17807259 | None:intergenic | 55.0% | |
| CCTGGATTCGCCGAATTGGA+AGG | - | chr4_1:17808002-17808021 | None:intergenic | 55.0% | |
| CCTTCCAATTCGGCGAATCC+AGG | + | chr4_1:17807999-17808018 | Msa0538470:CDS | 55.0% | |
| ! | CGCTGATGTTCGAGTTTCCG+TGG | + | chr4_1:17808082-17808101 | Msa0538470:CDS | 55.0% |
| GGCGATCCGAGGGTAACAAA+AGG | + | chr4_1:17808786-17808805 | Msa0538470:CDS | 55.0% | |
| ! | GTGTCGTTGGGTCAGATGCT+TGG | + | chr4_1:17809022-17809041 | Msa0538470:CDS | 55.0% |
| CCTTCGAACCCGGTTCAACC+CGG | - | chr4_1:17806517-17806536 | None:intergenic | 60.0% | |
| CTCGGCAAGTGCAGCTGCTT+CGG | - | chr4_1:17808462-17808481 | None:intergenic | 60.0% | |
| ! | CCGGGTTGAACCGGGTTCGA+AGG | + | chr4_1:17806514-17806533 | Msa0538470:CDS | 65.0% |
| GGCAAGTGCAGCTGCTTCGG+CGG | - | chr4_1:17808459-17808478 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17806385 | 17809207 | 17806385 | ID=Msa0538470;Name=Msa0538470 |
| chr4_1 | mRNA | 17806385 | 17809207 | 17806385 | ID=Msa0538470-mRNA-1;Parent=Msa0538470;Name=Msa0538470-mRNA-1;_AED=0.12;_eAED=0.12;_QI=100|0|0.5|1|1|1|2|0|490 |
| chr4_1 | exon | 17806385 | 17806679 | 17806385 | ID=Msa0538470-mRNA-1:exon:5291;Parent=Msa0538470-mRNA-1 |
| chr4_1 | exon | 17807930 | 17809207 | 17807930 | ID=Msa0538470-mRNA-1:exon:5292;Parent=Msa0538470-mRNA-1 |
| chr4_1 | five_prime_UTR | 17806385 | 17806484 | 17806385 | ID=Msa0538470-mRNA-1:five_prime_utr;Parent=Msa0538470-mRNA-1 |
| chr4_1 | CDS | 17806485 | 17806679 | 17806485 | ID=Msa0538470-mRNA-1:cds;Parent=Msa0538470-mRNA-1 |
| chr4_1 | CDS | 17807930 | 17809207 | 17807930 | ID=Msa0538470-mRNA-1:cds;Parent=Msa0538470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
