AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0538500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538500 MtrunA17_Chr4g0013151 88.936 470 25 3 1 470 66 508 0.0 762
Msa0538500 MtrunA17_Chr7g0244501 59.627 483 136 12 11 470 12 458 1.16e-165 479
Msa0538500 MtrunA17_Chr3g0114551 36.654 532 239 12 1 469 1 497 3.13e-64 218
Msa0538500 MtrunA17_Chr5g0438111 39.326 445 207 10 18 445 20 418 4.07e-60 206
Msa0538500 MtrunA17_Chr3g0133891 31.642 335 212 5 121 450 534 856 9.59e-33 132
Msa0538500 MtrunA17_Chr1g0153431 29.396 364 220 6 132 471 528 878 3.32e-26 112
Msa0538500 MtrunA17_Chr8g0369191 29.795 292 182 3 191 460 284 574 9.51e-18 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538500 AT2G38370.1 45.182 467 172 13 2 459 3 394 3.86e-88 279
Msa0538500 AT2G38370.2 45.182 467 172 13 2 459 20 411 5.67e-88 279
Msa0538500 AT2G40480.1 38.608 474 190 16 5 477 40 413 6.95e-58 199
Msa0538500 AT3G51720.1 35.202 446 140 8 18 463 6 302 5.86e-42 154
Msa0538500 AT3G56270.1 33.676 487 203 16 3 473 13 395 5.07e-38 144
Msa0538500 AT2G26570.1 33.533 334 206 5 121 450 408 729 2.89e-34 137
Msa0538500 AT2G26570.2 33.533 334 206 5 121 450 408 729 2.89e-34 137
Msa0538500 AT4G33390.1 35.531 273 171 2 191 459 459 730 2.05e-26 113
Msa0538500 AT5G42880.1 30.597 268 157 3 191 451 423 668 5.80e-20 93.6
Msa0538500 AT1G45545.1 29.183 257 174 4 199 449 424 678 3.20e-16 82.0
Msa0538500 AT1G45545.2 29.183 257 174 4 199 449 425 679 3.56e-16 82.0

Find 91 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGAACATTTCAAGAAAA+TGG 0.171368 4_1:-17858343 Msa0538500:CDS
TGAGGCAAATTTGAACATTA+AGG 0.232714 4_1:-17858757 Msa0538500:CDS
GGTTCGGTGGTGTTGGTTAT+TGG 0.246121 4_1:-17860052 Msa0538500:CDS
CGAAGCAAATGTATCGAAAA+TGG 0.273101 4_1:-17858022 Msa0538500:CDS
TTGAAGAGGCTTTAAGAAAA+TGG 0.291438 4_1:-17857891 Msa0538500:CDS
CGGTTCACTACCACCGTATC+AGG 0.320483 4_1:+17860161 None:intergenic
AGAGCTTGATGCTGGAAAAT+TGG 0.325183 4_1:-17858913 Msa0538500:CDS
TAGGCAAATGTTTGTGGCTT+TGG 0.340049 4_1:-17859676 Msa0538500:CDS
GGTGGTGGTTGTTATTTCCT+AGG 0.353799 4_1:-17859628 Msa0538500:CDS
CCTGCAGTTTAAGTCTTGTT+TGG 0.360526 4_1:+17858445 None:intergenic
GAAGGCTCTTGAAGAAGCTT+TGG 0.361979 4_1:-17857950 Msa0538500:CDS
GCAGAATTTGTGTGATGATA+AGG 0.369186 4_1:-17858730 Msa0538500:CDS
TAAACCTGGATTCGCCGAAT+TGG 0.369316 4_1:+17858653 None:intergenic
AGATGAACCTTCCGATATTA+CGG 0.371867 4_1:-17858391 Msa0538500:CDS
GGTAGTGAACCGGGTTGAAC+CGG 0.379917 4_1:-17860150 Msa0538500:CDS
CTCGGCAAGTGCAGCTGCTT+CGG 0.385931 4_1:+17858197 None:intergenic
GGAGGAACAAGCAGTGGAAT+TGG 0.401433 4_1:-17858892 Msa0538500:CDS
CAGCGATATCGTTTGTTGTT+CGG 0.413542 4_1:+17858592 None:intergenic
CTGATACGGTGGTAGTGAAC+CGG 0.418453 4_1:-17860160 Msa0538500:CDS
TGACGGGGATTGTGTGGAAA+AGG 0.419671 4_1:-17858154 Msa0538500:CDS
CCTTCCAATTCGGCGAATCC+AGG 0.426962 4_1:-17858657 Msa0538500:CDS
GTGGTGGTTGTTATTTCCTA+GGG 0.427960 4_1:-17859627 Msa0538500:CDS
CTCTATGGAAATTCCTGATA+CGG 0.430164 4_1:-17860174 None:intergenic
TTGAAGCTCTTCCGTAATAT+CGG 0.434165 4_1:+17858380 None:intergenic
AAAGAAGCTGTTACTCGGTT+CGG 0.446194 4_1:-17860068 Msa0538500:CDS
GCAGAACATTTCAAGAAAAT+GGG 0.446538 4_1:-17858342 Msa0538500:CDS
AAGCGTTATCTTATTATGAC+GGG 0.457886 4_1:-17858170 Msa0538500:CDS
TTTGGATAGGCAAATGTTTG+TGG 0.462900 4_1:-17859682 Msa0538500:intron
AAGAGCTTATCGTTAAAGAA+AGG 0.463956 4_1:-17858866 Msa0538500:CDS
GTTACTCGGTTCGGTGGTGT+TGG 0.473117 4_1:-17860059 Msa0538500:CDS
AGAGTAGAGGCTGCAAATAG+AGG 0.481776 4_1:-17857925 Msa0538500:CDS
CAACCACCACCATCATCATA+TGG 0.482751 4_1:+17859640 None:intergenic
CTATTATTATGATTAAGAAC+AGG 0.482857 4_1:+17860026 None:intergenic
AAGTCGTGTTCCTTCCAATT+CGG 0.489945 4_1:-17858667 Msa0538500:CDS
AGGGAAGTTAGTAGTTGAAG+AGG 0.491762 4_1:-17857905 Msa0538500:CDS
TATTAACCTCATTATTCCTC+AGG 0.502714 4_1:-17859997 Msa0538500:intron
AATTCCCTTAAAATTAAACC+TGG 0.505484 4_1:+17858639 None:intergenic
AACACAGAAGAGCTTGATGC+TGG 0.508566 4_1:-17858921 Msa0538500:CDS
GACGGGGATTGTGTGGAAAA+GGG 0.509570 4_1:-17858153 Msa0538500:CDS
GAATATCACTCGAGAAAACC+AGG 0.513568 4_1:-17858521 Msa0538500:CDS
ATTCTGAGTTAAACTCTCCC+TGG 0.516756 4_1:+17858503 None:intergenic
AGAGCTTATCGTTAAAGAAA+GGG 0.516851 4_1:-17858865 Msa0538500:CDS
TGGAAGGAACACGACTTCCA+TGG 0.528830 4_1:+17858673 None:intergenic
AAAGCGTTATCTTATTATGA+CGG 0.532017 4_1:-17858171 Msa0538500:CDS
CCTTCGAACCCGGTTCAACC+CGG 0.532037 4_1:+17860141 None:intergenic
CTGTTAAAGAAGCTGTTACT+CGG 0.535629 4_1:-17860073 Msa0538500:CDS
GGCAAGTGCAGCTGCTTCGG+CGG 0.535980 4_1:+17858200 None:intergenic
CCGGGTTGAACCGGGTTCGA+AGG 0.536423 4_1:-17860141 Msa0538500:CDS
GAACCGGGTTCGAAGGAAAA+CGG 0.537312 4_1:-17860134 Msa0538500:CDS
AGCTTCTTCGATAGTGAGAA+GGG 0.538244 4_1:+17857818 None:intergenic
TTTCTTGAAATGTTCTGCCT+CGG 0.538325 4_1:+17858347 None:intergenic
CGCTGATGTTCGAGTTTCCG+TGG 0.539445 4_1:-17858574 Msa0538500:CDS
GCTTCTTTAACAGACTCAAA+CGG 0.540992 4_1:+17860083 None:intergenic
GATTGTGTGGAAAAGGGTGA+TGG 0.543909 4_1:-17858147 Msa0538500:CDS
AAGAGTTGGAAAGTACCAAA+AGG 0.544666 4_1:-17858824 Msa0538500:CDS
TTTCTTGTTGAGTGATTCCA+CGG 0.545510 4_1:+17858557 None:intergenic
GCTTGATGCTGGAAAATTGG+AGG 0.546478 4_1:-17858910 Msa0538500:CDS
GGCGATCCGAGGGTAACAAA+AGG 0.547667 4_1:-17857870 Msa0538500:CDS
GAGTAGAGGCTGCAAATAGA+GGG 0.556599 4_1:-17857924 Msa0538500:CDS
CGAAGTTAAAACAAGCAAGA+AGG 0.565482 4_1:-17857968 Msa0538500:CDS
GAGCTTCTTCGATAGTGAGA+AGG 0.567321 4_1:+17857817 None:intergenic
CCTGGATTCGCCGAATTGGA+AGG 0.568328 4_1:+17858657 None:intergenic
TAAATACCTGAGGAATAATG+AGG 0.573109 4_1:+17859991 None:intergenic
GTAGTGAACCGGGTTGAACC+GGG 0.579200 4_1:-17860149 Msa0538500:CDS
TTATTATGACGGGGATTGTG+TGG 0.580473 4_1:-17858160 Msa0538500:CDS
AGAAGCTTTGGAAAGAGTAG+AGG 0.581826 4_1:-17857938 Msa0538500:CDS
TGATACGGTGGTAGTGAACC+GGG 0.582029 4_1:-17860159 Msa0538500:CDS
AAATATGATCCATATGATGA+TGG 0.585623 4_1:-17859649 Msa0538500:CDS
GATGAAGAAAAGGAAAACCA+TGG 0.590053 4_1:-17858690 Msa0538500:CDS
ACAAGCAGAAGAAGAATCTG+AGG 0.594341 4_1:-17858775 Msa0538500:CDS
CTCACTATCGAAGAAGCTCT+CGG 0.599628 4_1:-17857813 Msa0538500:intron
AGCTCTTCCGTAATATCGGA+AGG 0.603402 4_1:+17858384 None:intergenic
TAGAGCATTATACTCTTCAA+AGG 0.605551 4_1:+17858113 None:intergenic
AAAATTGGAGGAACAAGCAG+TGG 0.610904 4_1:-17858898 Msa0538500:CDS
TATGGAAATTCCTGATACGG+TGG 0.612604 4_1:-17860171 Msa0538500:CDS
TTTAAGAAAATGGCGATCCG+AGG 0.618775 4_1:-17857881 Msa0538500:CDS
CCAAACAAGACTTAAACTGC+AGG 0.619705 4_1:-17858445 Msa0538500:CDS
GAAGCTGTTACTCGGTTCGG+TGG 0.622084 4_1:-17860065 Msa0538500:CDS
TTAAGAAAATGGCGATCCGA+GGG 0.633233 4_1:-17857880 Msa0538500:CDS
TCTAGCATGCAAAGCTCGAG+AGG 0.633623 4_1:-17858094 Msa0538500:CDS
GATCCATATGATGATGGTGG+TGG 0.640703 4_1:-17859643 Msa0538500:CDS
AACAAGACTTAAACTGCAGG+TGG 0.640787 4_1:-17858442 Msa0538500:CDS
TACCAGAATATACTTCCCCT+AGG 0.641935 4_1:+17859611 None:intergenic
ACTCAACAAGAAACTTCAGA+AGG 0.651200 4_1:-17858547 Msa0538500:CDS
AAAGAAGCTGAAATTGAATG+TGG 0.654834 4_1:-17858417 Msa0538500:CDS
TGGTGGTTGTTATTTCCTAG+GGG 0.656312 4_1:-17859626 Msa0538500:CDS
GCTTCAACGATTGAGTTCCG+AGG 0.676528 4_1:-17858364 Msa0538500:CDS
AGCGTTATCTTATTATGACG+GGG 0.681282 4_1:-17858169 Msa0538500:CDS
GAAGGAAAACGGTTTAAGAG+CGG 0.692043 4_1:-17860123 Msa0538500:CDS
AATATCACTCGAGAAAACCA+GGG 0.694657 4_1:-17858520 Msa0538500:CDS
TATGATCCATATGATGATGG+TGG 0.727457 4_1:-17859646 Msa0538500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTTATTTTTTAT+AGG - chr4_1:17857703-17857722 Msa0538500:intron 0.0%
!!! TTATTTTTATTTTTTATAGG+TGG - chr4_1:17857706-17857725 Msa0538500:intron 10.0%
!!! TTGTGTATTTTTTTAATTTT+AGG - chr4_1:17857756-17857775 Msa0538500:intron 10.0%
!! TCATATGAAAATAATATATT+TGG - chr4_1:17857873-17857892 Msa0538500:CDS 10.0%
!! TGAAAATAATATATTTGGAT+AGG - chr4_1:17857878-17857897 Msa0538500:CDS 15.0%
!! ATACATTCATTGAAAAAATA+GGG + chr4_1:17858304-17858323 None:intergenic 15.0%
!!! TGCTTATATTTTATTTTAGA+TGG + chr4_1:17859952-17859971 None:intergenic 15.0%
!! AAATGAAATATGAGAAAAAA+TGG + chr4_1:17860041-17860060 None:intergenic 15.0%
!!! TTTTTTCTCATATTTCATTT+CGG - chr4_1:17860041-17860060 Msa0538500:CDS 15.0%
!! CTATTATTATGATTAAGAAC+AGG + chr4_1:17857550-17857569 None:intergenic 20.0%
!! AACATAAAAATAAATACCTG+AGG + chr4_1:17857595-17857614 None:intergenic 20.0%
!!! TTTTTAATTTTAGGAAGACT+TGG - chr4_1:17857765-17857784 Msa0538500:intron 20.0%
!! CATACATTCATTGAAAAAAT+AGG + chr4_1:17858305-17858324 None:intergenic 20.0%
!! TCCAAAAAAAAAAAAACACA+AGG + chr4_1:17858514-17858533 None:intergenic 20.0%
!!! TTTTGGATTTCATACTTTTT+TGG - chr4_1:17858527-17858546 Msa0538500:CDS 20.0%
!!! TTTGGATTTCATACTTTTTT+GGG - chr4_1:17858528-17858547 Msa0538500:CDS 20.0%
!!! GAAAATGGATGTTTTAAAAA+GGG - chr4_1:17859566-17859585 Msa0538500:intron 20.0%
!! TACATAAAACAAAAAGACTT+TGG + chr4_1:17860121-17860140 None:intergenic 20.0%
!! ATTTGTATTGCACTATTTAT+AGG - chr4_1:17860140-17860159 Msa0538500:CDS 20.0%
! AAATTAGTTAAAGCGATTTC+TGG - chr4_1:17857796-17857815 Msa0538500:intron 25.0%
! AAATATGATCCATATGATGA+TGG - chr4_1:17857924-17857943 Msa0538500:CDS 25.0%
! ATATTCTCTTTCTAACTATG+TGG + chr4_1:17858099-17858118 None:intergenic 25.0%
!! TTTTACCATGATTATTACAG+TGG - chr4_1:17858276-17858295 Msa0538500:CDS 25.0%
! AATATCAAGATTCAAAGCAT+AGG + chr4_1:17858359-17858378 None:intergenic 25.0%
!!! GCCTTGTGTTTTTTTTTTTT+TGG - chr4_1:17858510-17858529 Msa0538500:CDS 25.0%
!!! TTGGATTTCATACTTTTTTG+GGG - chr4_1:17858529-17858548 Msa0538500:CDS 25.0%
!!! TCTTGATGTTTTAAAAGAGT+TGG - chr4_1:17858735-17858754 Msa0538500:CDS 25.0%
! GAAAAAAGAAGATGAAGAAA+AGG - chr4_1:17858873-17858892 Msa0538500:CDS 25.0%
!!! GAATCCAGGTTTAATTTTAA+GGG - chr4_1:17858930-17858949 Msa0538500:CDS 25.0%
! AATTCCCTTAAAATTAAACC+TGG + chr4_1:17858937-17858956 None:intergenic 25.0%
! TTCAAAAATAACTTCACTAG+AGG - chr4_1:17859095-17859114 Msa0538500:intron 25.0%
!! ATAAGATAACGCTTTTATCT+CGG + chr4_1:17859397-17859416 None:intergenic 25.0%
!! AAAGCGTTATCTTATTATGA+CGG - chr4_1:17859402-17859421 Msa0538500:intron 25.0%
!!! CGAAAATGGATGTTTTAAAA+AGG - chr4_1:17859565-17859584 Msa0538500:intron 25.0%
! ATAAAACAAAAAGACTTTGG+CGG + chr4_1:17860118-17860137 None:intergenic 25.0%
TATTAACCTCATTATTCCTC+AGG - chr4_1:17857576-17857595 Msa0538500:intron 30.0%
TAAATACCTGAGGAATAATG+AGG + chr4_1:17857585-17857604 None:intergenic 30.0%
! GGAAGTATATTCTGGTAATT+CGG - chr4_1:17857968-17857987 Msa0538500:CDS 30.0%
TATGAATTATGAATGCTCTC+TGG - chr4_1:17858116-17858135 Msa0538500:CDS 30.0%
! GTAACTGCAATTTTGAATCA+CGG + chr4_1:17858335-17858354 None:intergenic 30.0%
! TGCTTTGAATCTTGATATTG+TGG - chr4_1:17858360-17858379 Msa0538500:CDS 30.0%
! TTTTCACAAAACCAAAACTG+CGG + chr4_1:17858415-17858434 None:intergenic 30.0%
!!! TGGATTTCATACTTTTTTGG+GGG - chr4_1:17858530-17858549 Msa0538500:CDS 30.0%
AAGAGCTTATCGTTAAAGAA+AGG - chr4_1:17858707-17858726 Msa0538500:CDS 30.0%
AGAGCTTATCGTTAAAGAAA+GGG - chr4_1:17858708-17858727 Msa0538500:CDS 30.0%
TGAGGCAAATTTGAACATTA+AGG - chr4_1:17858816-17858835 Msa0538500:CDS 30.0%
!! CGAATCCAGGTTTAATTTTA+AGG - chr4_1:17858929-17858948 Msa0538500:CDS 30.0%
AAAGAAGCTGAAATTGAATG+TGG - chr4_1:17859156-17859175 Msa0538500:intron 30.0%
GCAGAACATTTCAAGAAAAT+GGG - chr4_1:17859231-17859250 Msa0538500:intron 30.0%
AAGCGTTATCTTATTATGAC+GGG - chr4_1:17859403-17859422 Msa0538500:intron 30.0%
! TAGAGCATTATACTCTTCAA+AGG + chr4_1:17859463-17859482 None:intergenic 30.0%
!! TTGAAGAGGCTTTAAGAAAA+TGG - chr4_1:17859682-17859701 Msa0538500:intron 30.0%
GAGAAAAAATGGTAGTTGAA+AGG + chr4_1:17860030-17860049 None:intergenic 30.0%
TTCTCATATTTCATTTCGGA+AGG - chr4_1:17860045-17860064 Msa0538500:CDS 30.0%
GCTTCTTTAACAGACTCAAA+CGG + chr4_1:17857493-17857512 None:intergenic 35.0%
CTGTTAAAGAAGCTGTTACT+CGG - chr4_1:17857500-17857519 Msa0538500:intron 35.0%
TAGGTGGTTGTTTGTGATTT+CGG - chr4_1:17857722-17857741 Msa0538500:intron 35.0%
!! ATTTTAGGAAGACTTGGATC+TGG - chr4_1:17857771-17857790 Msa0538500:intron 35.0%
TTTGGATAGGCAAATGTTTG+TGG - chr4_1:17857891-17857910 Msa0538500:CDS 35.0%
!! TATGATCCATATGATGATGG+TGG - chr4_1:17857927-17857946 Msa0538500:CDS 35.0%
TATTCTGGTAATTCGGAGTT+AGG - chr4_1:17857975-17857994 Msa0538500:CDS 35.0%
TTTCTATGTGGAACAACTCT+AGG + chr4_1:17858013-17858032 None:intergenic 35.0%
GTTCCAAATCATTCGTCATT+AGG - chr4_1:17858046-17858065 Msa0538500:CDS 35.0%
CTTGATATTGTGGCAAAATG+CGG - chr4_1:17858370-17858389 Msa0538500:CDS 35.0%
CCACAACATAAACATCTTAG+AGG + chr4_1:17858438-17858457 None:intergenic 35.0%
!! CCTCTAAGATGTTTATGTTG+TGG - chr4_1:17858435-17858454 Msa0538500:CDS 35.0%
!!! TTTTGGGGGTATTTTCTTTC+TGG - chr4_1:17858544-17858563 Msa0538500:CDS 35.0%
!! AAGAGTTGGAAAGTACCAAA+AGG - chr4_1:17858749-17858768 Msa0538500:CDS 35.0%
! CAGATTTTCAACAAGCCTTT+TGG + chr4_1:17858767-17858786 None:intergenic 35.0%
GCAGAATTTGTGTGATGATA+AGG - chr4_1:17858843-17858862 Msa0538500:CDS 35.0%
GATGAAGAAAAGGAAAACCA+TGG - chr4_1:17858883-17858902 Msa0538500:CDS 35.0%
TTTCTTGTTGAGTGATTCCA+CGG + chr4_1:17859019-17859038 None:intergenic 35.0%
ACTCAACAAGAAACTTCAGA+AGG - chr4_1:17859026-17859045 Msa0538500:intron 35.0%
AATATCACTCGAGAAAACCA+GGG - chr4_1:17859053-17859072 Msa0538500:intron 35.0%
AGATGAACCTTCCGATATTA+CGG - chr4_1:17859182-17859201 Msa0538500:intron 35.0%
TTGAAGCTCTTCCGTAATAT+CGG + chr4_1:17859196-17859215 None:intergenic 35.0%
TTTCTTGAAATGTTCTGCCT+CGG + chr4_1:17859229-17859248 None:intergenic 35.0%
GGCAGAACATTTCAAGAAAA+TGG - chr4_1:17859230-17859249 Msa0538500:intron 35.0%
AAAAATGAAGGAAGCTGCTA+GGG - chr4_1:17859350-17859369 Msa0538500:intron 35.0%
AGCGTTATCTTATTATGACG+GGG - chr4_1:17859404-17859423 Msa0538500:intron 35.0%
CGAAGCAAATGTATCGAAAA+TGG - chr4_1:17859551-17859570 Msa0538500:intron 35.0%
CGAAGTTAAAACAAGCAAGA+AGG - chr4_1:17859605-17859624 Msa0538500:intron 35.0%
TCTCGGTTATTCGACATAAA+TGG - chr4_1:17859777-17859796 Msa0538500:intron 35.0%
CTCGGTTATTCGACATAAAT+GGG - chr4_1:17859778-17859797 Msa0538500:intron 35.0%
AGTTGAAAGGTCAATATACG+TGG + chr4_1:17860017-17860036 None:intergenic 35.0%
GAAGGAAAACGGTTTAAGAG+CGG - chr4_1:17857450-17857469 Msa0538500:intron 40.0%
AAAGAAGCTGTTACTCGGTT+CGG - chr4_1:17857505-17857524 Msa0538500:intron 40.0%
AGGTGGTTGTTTGTGATTTC+GGG - chr4_1:17857723-17857742 Msa0538500:intron 40.0%
TAGGCAAATGTTTGTGGCTT+TGG - chr4_1:17857897-17857916 Msa0538500:CDS 40.0%
!! GTGGTGGTTGTTATTTCCTA+GGG - chr4_1:17857946-17857965 Msa0538500:CDS 40.0%
!! TGGTGGTTGTTATTTCCTAG+GGG - chr4_1:17857947-17857966 Msa0538500:CDS 40.0%
! TTCCTAGGGGAAGTATATTC+TGG - chr4_1:17857960-17857979 Msa0538500:CDS 40.0%
TACCAGAATATACTTCCCCT+AGG + chr4_1:17857965-17857984 None:intergenic 40.0%
ACTCGAGTTCGATTTCTATG+TGG + chr4_1:17858025-17858044 None:intergenic 40.0%
CCACCTAATGACGAATGATT+TGG + chr4_1:17858052-17858071 None:intergenic 40.0%
CCAAATCATTCGTCATTAGG+TGG - chr4_1:17858049-17858068 Msa0538500:CDS 40.0%
ACTATGTGGTTAGACTCAAG+TGG + chr4_1:17858085-17858104 None:intergenic 40.0%
! ATCGAAGGAGTTCTAACTAG+AGG + chr4_1:17858143-17858162 None:intergenic 40.0%
TACCAACCTAGTTGTCTGTT+TGG - chr4_1:17858177-17858196 Msa0538500:CDS 40.0%
ACCAACCTAGTTGTCTGTTT+GGG - chr4_1:17858178-17858197 Msa0538500:CDS 40.0%
AGAGCTTGATGCTGGAAAAT+TGG - chr4_1:17858660-17858679 Msa0538500:CDS 40.0%
AAAATTGGAGGAACAAGCAG+TGG - chr4_1:17858675-17858694 Msa0538500:CDS 40.0%
ACAAGCAGAAGAAGAATCTG+AGG - chr4_1:17858798-17858817 Msa0538500:CDS 40.0%
AAGTCGTGTTCCTTCCAATT+CGG - chr4_1:17858906-17858925 Msa0538500:CDS 40.0%
!! CAGCGATATCGTTTGTTGTT+CGG + chr4_1:17858984-17859003 None:intergenic 40.0%
GAATATCACTCGAGAAAACC+AGG - chr4_1:17859052-17859071 Msa0538500:intron 40.0%
ATTCTGAGTTAAACTCTCCC+TGG + chr4_1:17859073-17859092 None:intergenic 40.0%
!! CCTGCAGTTTAAGTCTTGTT+TGG + chr4_1:17859131-17859150 None:intergenic 40.0%
CCAAACAAGACTTAAACTGC+AGG - chr4_1:17859128-17859147 Msa0538500:intron 40.0%
AACAAGACTTAAACTGCAGG+TGG - chr4_1:17859131-17859150 Msa0538500:intron 40.0%
AGTTGCTGCTCGAAAAATGA+AGG - chr4_1:17859338-17859357 Msa0538500:intron 40.0%
GAAAAATGAAGGAAGCTGCT+AGG - chr4_1:17859349-17859368 Msa0538500:intron 40.0%
! TTATTATGACGGGGATTGTG+TGG - chr4_1:17859413-17859432 Msa0538500:intron 40.0%
!! AGAAGCTTTGGAAAGAGTAG+AGG - chr4_1:17859635-17859654 Msa0538500:CDS 40.0%
AGGGAAGTTAGTAGTTGAAG+AGG - chr4_1:17859668-17859687 Msa0538500:CDS 40.0%
TTTAAGAAAATGGCGATCCG+AGG - chr4_1:17859692-17859711 Msa0538500:intron 40.0%
TTAAGAAAATGGCGATCCGA+GGG - chr4_1:17859693-17859712 Msa0538500:intron 40.0%
AGCTTCTTCGATAGTGAGAA+GGG + chr4_1:17859758-17859777 None:intergenic 40.0%
AAACAAAAAGACTTTGGCGG+TGG + chr4_1:17860115-17860134 None:intergenic 40.0%
! AAACCGTTTTCCTTCGAACC+CGG + chr4_1:17857445-17857464 None:intergenic 45.0%
!! GATCCATATGATGATGGTGG+TGG - chr4_1:17857930-17857949 Msa0538500:CDS 45.0%
CAACCACCACCATCATCATA+TGG + chr4_1:17857936-17857955 None:intergenic 45.0%
!! GGTGGTGGTTGTTATTTCCT+AGG - chr4_1:17857945-17857964 Msa0538500:CDS 45.0%
ACAACTCTAGGTCAGACTTC+CGG + chr4_1:17858001-17858020 None:intergenic 45.0%
!! AACTAGGTTGGTAGTGAGCT+GGG + chr4_1:17858170-17858189 None:intergenic 45.0%
TCCCAAACAGACAACTAGGT+TGG + chr4_1:17858182-17858201 None:intergenic 45.0%
TTCGTCCCAAACAGACAACT+AGG + chr4_1:17858186-17858205 None:intergenic 45.0%
! TTGTCTGTTTGGGACGAATG+TGG - chr4_1:17858188-17858207 Msa0538500:CDS 45.0%
GGGAGCCACTGTAATAATCA+TGG + chr4_1:17858284-17858303 None:intergenic 45.0%
CACAAAACCAAAACTGCGGT+TGG + chr4_1:17858411-17858430 None:intergenic 45.0%
AACACAGAAGAGCTTGATGC+TGG - chr4_1:17858652-17858671 Msa0538500:CDS 45.0%
GCTTGATGCTGGAAAATTGG+AGG - chr4_1:17858663-17858682 Msa0538500:CDS 45.0%
TAAACCTGGATTCGCCGAAT+TGG + chr4_1:17858923-17858942 None:intergenic 45.0%
AGCTCTTCCGTAATATCGGA+AGG + chr4_1:17859192-17859211 None:intergenic 45.0%
GATTGTGTGGAAAAGGGTGA+TGG - chr4_1:17859426-17859445 Msa0538500:intron 45.0%
GAAGGCTCTTGAAGAAGCTT+TGG - chr4_1:17859623-17859642 Msa0538500:intron 45.0%
AGAGTAGAGGCTGCAAATAG+AGG - chr4_1:17859648-17859667 Msa0538500:CDS 45.0%
GAGTAGAGGCTGCAAATAGA+GGG - chr4_1:17859649-17859668 Msa0538500:CDS 45.0%
! TGATCGCCTTTTGTTACCCT+CGG + chr4_1:17859712-17859731 None:intergenic 45.0%
GAGCTTCTTCGATAGTGAGA+AGG + chr4_1:17859759-17859778 None:intergenic 45.0%
CTCACTATCGAAGAAGCTCT+CGG - chr4_1:17859760-17859779 Msa0538500:intron 45.0%
!!! AAAAAAATATTGTATTATTT+TGG - chr4_1:17857677-17857696 Msa0538500:intron 5.0%
! CTGATACGGTGGTAGTGAAC+CGG - chr4_1:17857413-17857432 Msa0538500:CDS 50.0%
! TGATACGGTGGTAGTGAACC+GGG - chr4_1:17857414-17857433 Msa0538500:CDS 50.0%
GAACCGGGTTCGAAGGAAAA+CGG - chr4_1:17857439-17857458 Msa0538500:intron 50.0%
!! GGTTCGGTGGTGTTGGTTAT+TGG - chr4_1:17857521-17857540 Msa0538500:intron 50.0%
CTGGTAATTCGGAGTTAGGC+CGG - chr4_1:17857979-17857998 Msa0538500:CDS 50.0%
!! ACTAGGTTGGTAGTGAGCTG+GGG + chr4_1:17858169-17858188 None:intergenic 50.0%
!! CAACTAGGTTGGTAGTGAGC+TGG + chr4_1:17858171-17858190 None:intergenic 50.0%
! GATCGTTCCAACCGCAGTTT+TGG - chr4_1:17858401-17858420 Msa0538500:CDS 50.0%
GGAGGAACAAGCAGTGGAAT+TGG - chr4_1:17858681-17858700 Msa0538500:CDS 50.0%
TGGAAGGAACACGACTTCCA+TGG + chr4_1:17858903-17858922 None:intergenic 50.0%
GCTTCAACGATTGAGTTCCG+AGG - chr4_1:17859209-17859228 Msa0538500:intron 50.0%
TGACGGGGATTGTGTGGAAA+AGG - chr4_1:17859419-17859438 Msa0538500:intron 50.0%
GACGGGGATTGTGTGGAAAA+GGG - chr4_1:17859420-17859439 Msa0538500:intron 50.0%
TCTAGCATGCAAAGCTCGAG+AGG - chr4_1:17859479-17859498 Msa0538500:intron 50.0%
CGGTTCACTACCACCGTATC+AGG + chr4_1:17857415-17857434 None:intergenic 55.0%
! GGTAGTGAACCGGGTTGAAC+CGG - chr4_1:17857423-17857442 Msa0538500:intron 55.0%
! GTAGTGAACCGGGTTGAACC+GGG - chr4_1:17857424-17857443 Msa0538500:intron 55.0%
!! GAAGCTGTTACTCGGTTCGG+TGG - chr4_1:17857508-17857527 Msa0538500:intron 55.0%
!! GTTACTCGGTTCGGTGGTGT+TGG - chr4_1:17857514-17857533 Msa0538500:intron 55.0%
AGTGAGCTGGGGAACATCGA+AGG + chr4_1:17858158-17858177 None:intergenic 55.0%
CCTGGATTCGCCGAATTGGA+AGG + chr4_1:17858919-17858938 None:intergenic 55.0%
CCTTCCAATTCGGCGAATCC+AGG - chr4_1:17858916-17858935 Msa0538500:CDS 55.0%
! CGCTGATGTTCGAGTTTCCG+TGG - chr4_1:17858999-17859018 Msa0538500:intron 55.0%
GGCGATCCGAGGGTAACAAA+AGG - chr4_1:17859703-17859722 Msa0538500:intron 55.0%
CCTTCGAACCCGGTTCAACC+CGG + chr4_1:17857435-17857454 None:intergenic 60.0%
CTCGGCAAGTGCAGCTGCTT+CGG + chr4_1:17859379-17859398 None:intergenic 60.0%
! CCGGGTTGAACCGGGTTCGA+AGG - chr4_1:17857432-17857451 Msa0538500:intron 65.0%
GGCAAGTGCAGCTGCTTCGG+CGG + chr4_1:17859376-17859395 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 17857403 17860192 17857403 ID=Msa0538500;Name=Msa0538500
chr4_1 mRNA 17857403 17860192 17857403 ID=Msa0538500-mRNA-1;Parent=Msa0538500;Name=Msa0538500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.5|1|1|4|0|477
chr4_1 exon 17859998 17860192 17859998 ID=Msa0538500-mRNA-1:exon:5305;Parent=Msa0538500-mRNA-1
chr4_1 exon 17859624 17859695 17859624 ID=Msa0538500-mRNA-1:exon:5304;Parent=Msa0538500-mRNA-1
chr4_1 exon 17857814 17858949 17857814 ID=Msa0538500-mRNA-1:exon:5303;Parent=Msa0538500-mRNA-1
chr4_1 exon 17857403 17857433 17857403 ID=Msa0538500-mRNA-1:exon:5302;Parent=Msa0538500-mRNA-1
chr4_1 CDS 17859998 17860192 17859998 ID=Msa0538500-mRNA-1:cds;Parent=Msa0538500-mRNA-1
chr4_1 CDS 17859624 17859695 17859624 ID=Msa0538500-mRNA-1:cds;Parent=Msa0538500-mRNA-1
chr4_1 CDS 17857814 17858949 17857814 ID=Msa0538500-mRNA-1:cds;Parent=Msa0538500-mRNA-1
chr4_1 CDS 17857403 17857433 17857403 ID=Msa0538500-mRNA-1:cds;Parent=Msa0538500-mRNA-1
Gene Sequence

>Msa0538500

ATGGAAATTCCTGATACGGTGGTAGTGAACCGGGTTGAACCGGGTTCGAAGGAAAACGGTTTAAGAGCGGAGATTGATACTTCTGCGCCGTTTGAGTCTGTTAAAGAAGCTGTTACTCGGTTCGGTGGTGTTGGTTATTGGAAACCTGTTCTTAATCATAATAATAGTAACACTATTAACCTCATTATTCCTCAGGCAAATGTTTGTGGCTTTGGAAGAAAATATGATCCATATGATGATGGTGGTGGTTGTTATTTCCTAGGGGAACAACAAAACACAGAAGAGCTTGATGCTGGAAAATTGGAGGAACAAGCAGTGGAATTGGAGAAAGAGCTTATCGTTAAAGAAAGGGAAACTCTTGATGTTTTAAAAGAGTTGGAAAGTACCAAAAGGCTTGTTGAAAATCTGAAATCAAAGCTACAAGCAGAAGAAGAATCTGAGGCAAATTTGAACATTAAGGAGAAGCAGAATTTGTGTGATGATAAGGAGAACGAGAAAAAAGAAGATGAAGAAAAGGAAAACCATGGAAGTCGTGTTCCTTCCAATTCGGCGAATCCAGGTTTAATTTTAAGGGAATTGAAGCAAGCGAAATTTAATCTAAACCGAACAACAAACGATATCGCTGATGTTCGAGTTTCCGTGGAATCACTCAACAAGAAACTTCAGAAGGAAAGAATATCACTCGAGAAAACCAGGGAGAGTTTAACTCAGAATTCTTCAAAAATAACTTCACTAGAGGAAGAGCTGAACCAAACAAGACTTAAACTGCAGGTGGTGAAAGAAGCTGAAATTGAATGTGGTTCAGATGAACCTTCCGATATTACGGAAGAGCTTCAACGATTGAGTTCCGAGGCAGAACATTTCAAGAAAATGGGAGAAGTTGCGAAATCAGAAGTCATGAGAGCAATGTCTGAGATTGAACAGACAAAAGCTATGATAAGAACATCTGAATTTAGATTAGTTGCTGCTCGAAAAATGAAGGAAGCTGCTAGGGCCGCCGAAGCAGCTGCACTTGCCGAGATAAAAGCGTTATCTTATTATGACGGGGATTGTGTGGAAAAGGGTGATGGAGTTACTCTTACCTTTGAAGAGTATAATGCTCTAGCATGCAAAGCTCGAGAGGTAGATGAACAATCTAAGAAGAGAGTTCATGATGCTATGTTTCAAGTTGACGAAGCAAATGTATCGAAAATGGATGTTTTAAAAAGGGTTGAAGAAGCTACATTCGAAGTTAAAACAAGCAAGAAGGCTCTTGAAGAAGCTTTGGAAAGAGTAGAGGCTGCAAATAGAGGGAAGTTAGTAGTTGAAGAGGCTTTAAGAAAATGGCGATCCGAGGGTAACAAAAGGCGATCATCAAACTCTACAAAGTTTAAAAACCCTTCTCACTATCGAAGAAGCTCTCGGATGTATGTTTCTCAGTTATCATCAAACTAA

Protein sequence

>Msa0538500

MEIPDTVVVNRVEPGSKENGLRAEIDTSAPFESVKEAVTRFGGVGYWKPVLNHNNSNTINLIIPQANVCGFGRKYDPYDDGGGCYFLGEQQNTEELDAGKLEEQAVELEKELIVKERETLDVLKELESTKRLVENLKSKLQAEEESEANLNIKEKQNLCDDKENEKKEDEEKENHGSRVPSNSANPGLILRELKQAKFNLNRTTNDIADVRVSVESLNKKLQKERISLEKTRESLTQNSSKITSLEEELNQTRLKLQVVKEAEIECGSDEPSDITEELQRLSSEAEHFKKMGEVAKSEVMRAMSEIEQTKAMIRTSEFRLVAARKMKEAARAAEAAALAEIKALSYYDGDCVEKGDGVTLTFEEYNALACKAREVDEQSKKRVHDAMFQVDEANVSKMDVLKRVEEATFEVKTSKKALEEALERVEAANRGKLVVEEALRKWRSEGNKRRSSNSTKFKNPSHYRRSSRMYVSQLSSN*