Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554210 | XP_024638675.1 | 94.276 | 297 | 10 | 1 | 1 | 297 | 1 | 290 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554210 | sp|O49460|PHB1_ARATH | 81.633 | 294 | 47 | 1 | 3 | 296 | 1 | 287 | 4.33e-164 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554210 | G7JSU6 | 94.276 | 297 | 10 | 1 | 1 | 297 | 4 | 293 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002430 | Msa0554210 | 0.808264 | 3.373850e-50 | -8.615850e-47 |
| Msa0044890 | Msa0554210 | 0.808998 | 2.351447e-50 | -8.615850e-47 |
| Msa0068970 | Msa0554210 | 0.818395 | 2.004447e-52 | -8.615850e-47 |
| Msa0136400 | Msa0554210 | 0.827042 | 1.946772e-54 | -8.615850e-47 |
| Msa0184650 | Msa0554210 | 0.807966 | 3.904427e-50 | -8.615850e-47 |
| Msa0223950 | Msa0554210 | 0.824247 | 8.951737e-54 | -8.615850e-47 |
| Msa0382950 | Msa0554210 | 0.834646 | 2.658121e-56 | -8.615850e-47 |
| Msa0382960 | Msa0554210 | 0.810134 | 1.340537e-50 | -8.615850e-47 |
| Msa0432750 | Msa0554210 | 0.839960 | 1.158687e-57 | -8.615850e-47 |
| Msa0479980 | Msa0554210 | 0.842869 | 1.986534e-58 | -8.615850e-47 |
| Msa0262400 | Msa0554210 | 0.807053 | 6.097986e-50 | -8.615850e-47 |
| Msa0265200 | Msa0554210 | 0.815390 | 9.474690e-52 | -8.615850e-47 |
| Msa0342850 | Msa0554210 | 0.818278 | 2.131135e-52 | -8.615850e-47 |
| Msa0486070 | Msa0554210 | 0.823397 | 1.415931e-53 | -8.615850e-47 |
| Msa0544720 | Msa0554210 | 0.827912 | 1.203784e-54 | -8.615850e-47 |
| Msa0554210 | Msa0587850 | 0.800687 | 1.282361e-48 | -8.615850e-47 |
| Msa0554210 | Msa0608260 | 0.808337 | 3.254006e-50 | -8.615850e-47 |
| Msa0554210 | Msa0648620 | 0.850505 | 1.626454e-60 | -8.615850e-47 |
| Msa0554210 | Msa0648670 | 0.840383 | 8.988012e-58 | -8.615850e-47 |
| Msa0554210 | Msa0691330 | 0.818736 | 1.677573e-52 | -8.615850e-47 |
| Msa0554210 | Msa0796490 | 0.812750 | 3.623367e-51 | -8.615850e-47 |
| Msa0554210 | Msa0930490 | 0.819891 | 9.152716e-53 | -8.615850e-47 |
| Msa0554210 | Msa1004780 | 0.812132 | 4.944144e-51 | -8.615850e-47 |
| Msa0554210 | Msa1079910 | 0.805473 | 1.312690e-49 | -8.615850e-47 |
| Msa0554210 | Msa1079920 | 0.824889 | 6.321398e-54 | -8.615850e-47 |
| Msa0554210 | Msa1116940 | 0.828691 | 7.809547e-55 | -8.615850e-47 |
| Msa0554210 | Msa1124850 | 0.832799 | 7.693560e-56 | -8.615850e-47 |
| Msa0554210 | Msa1128120 | 0.814132 | 1.800010e-51 | -8.615850e-47 |
| Msa0554210 | Msa1136880 | 0.843510 | 1.340834e-58 | -8.615850e-47 |
| Msa0554210 | Msa1211820 | 0.862940 | 3.549613e-64 | -8.615850e-47 |
| Msa0554210 | Msa1218110 | 0.809889 | 1.513676e-50 | -8.615850e-47 |
| Msa0554210 | Msa1257450 | 0.812807 | 3.520853e-51 | -8.615850e-47 |
| Msa0554210 | Msa1299690 | 0.823562 | 1.295853e-53 | -8.615850e-47 |
| Msa0554210 | Msa1305260 | 0.801842 | 7.438730e-49 | -8.615850e-47 |
| Msa0554210 | Msa1332230 | 0.839307 | 1.713831e-57 | -8.615850e-47 |
| Msa0554210 | Msa1341130 | 0.824318 | 8.612343e-54 | -8.615850e-47 |
| Msa0554210 | Msa1341780 | 0.869726 | 2.495059e-66 | -8.615850e-47 |
| Msa0554210 | Msa1344160 | 0.822397 | 2.421738e-53 | -8.615850e-47 |
| Msa0554210 | Msa1344190 | 0.822270 | 2.591273e-53 | -8.615850e-47 |
| Msa0554210 | Msa1371410 | 0.831491 | 1.619648e-55 | -8.615850e-47 |
| Msa0554210 | Msa1415620 | 0.839170 | 1.859566e-57 | -8.615850e-47 |
| Msa0554210 | Msa1418690 | 0.804319 | 2.286744e-49 | -8.615850e-47 |
| Msa0554210 | Msa1433590 | 0.860628 | 1.808949e-63 | -8.615850e-47 |
| Msa0554210 | Msa1444240 | 0.830378 | 3.037847e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554210 | MtrunA17_Chr4g0040101 | 94.178 | 292 | 10 | 1 | 6 | 297 | 1 | 285 | 0.0 | 549 |
| Msa0554210 | MtrunA17_Chr2g0325011 | 85.017 | 287 | 36 | 1 | 10 | 296 | 5 | 284 | 3.98e-177 | 490 |
| Msa0554210 | MtrunA17_Chr8g0356051 | 52.191 | 251 | 112 | 2 | 28 | 277 | 22 | 265 | 6.59e-87 | 261 |
| Msa0554210 | MtrunA17_Chr3g0079011 | 50.368 | 272 | 126 | 4 | 17 | 286 | 10 | 274 | 1.37e-86 | 260 |
| Msa0554210 | MtrunA17_Chr5g0444361 | 30.909 | 165 | 106 | 2 | 28 | 192 | 22 | 178 | 1.92e-22 | 92.0 |
| Msa0554210 | MtrunA17_Chr6g0449171 | 34.483 | 145 | 57 | 1 | 105 | 249 | 1 | 107 | 4.03e-18 | 78.2 |
| Msa0554210 | MtrunA17_Chr5g0444371 | 34.146 | 123 | 66 | 1 | 70 | 192 | 47 | 154 | 3.47e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554210 | AT4G28510.1 | 81.633 | 294 | 47 | 1 | 3 | 296 | 1 | 287 | 4.41e-165 | 460 |
| Msa0554210 | AT2G20530.2 | 78.451 | 297 | 53 | 2 | 1 | 297 | 1 | 286 | 6.14e-164 | 457 |
| Msa0554210 | AT2G20530.1 | 78.451 | 297 | 53 | 2 | 1 | 297 | 1 | 286 | 6.14e-164 | 457 |
| Msa0554210 | AT1G03860.1 | 78.425 | 292 | 54 | 2 | 1 | 292 | 1 | 283 | 6.21e-164 | 457 |
| Msa0554210 | AT1G03860.3 | 78.425 | 292 | 54 | 2 | 1 | 292 | 1 | 283 | 6.21e-164 | 457 |
| Msa0554210 | AT5G44140.1 | 71.930 | 285 | 73 | 1 | 3 | 287 | 1 | 278 | 2.02e-148 | 417 |
| Msa0554210 | AT1G03860.2 | 85.780 | 218 | 31 | 0 | 75 | 292 | 1 | 218 | 1.66e-129 | 367 |
| Msa0554210 | AT3G27280.1 | 48.897 | 272 | 130 | 3 | 17 | 286 | 11 | 275 | 1.52e-86 | 260 |
| Msa0554210 | AT3G27280.2 | 48.897 | 272 | 130 | 3 | 17 | 286 | 11 | 275 | 1.52e-86 | 260 |
| Msa0554210 | AT5G40770.1 | 50.382 | 262 | 122 | 2 | 17 | 277 | 11 | 265 | 3.61e-85 | 257 |
| Msa0554210 | AT5G14300.1 | 44.444 | 243 | 101 | 4 | 36 | 277 | 22 | 231 | 1.02e-66 | 209 |
Find 79 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAATCAATTGAGCACTTT+TGG | 0.231448 | 4_1:+51452830 | None:intergenic |
| TAACTAACAGTGAATGAAAA+TGG | 0.236284 | 4_1:+51455946 | None:intergenic |
| CTTGGTGGACTTGCTGTCTA+TGG | 0.237252 | 4_1:-51456054 | Msa0554210:CDS |
| TTGATTAAAGTTAGCATTCT+TGG | 0.252178 | 4_1:-51456072 | Msa0554210:CDS |
| CTGCTTTGCAAACTGAAATA+TGG | 0.275118 | 4_1:-51452546 | Msa0554210:three_prime_UTR |
| GAATCTCCAGGATTTAAAAT+TGG | 0.279612 | 4_1:-51452685 | Msa0554210:CDS |
| TTCGATAGACCGTTGGTAAT+TGG | 0.291628 | 4_1:+51453783 | None:intergenic |
| GAGATAAGGGATGTTAAATA+AGG | 0.302415 | 4_1:-51452477 | Msa0554210:three_prime_UTR |
| CATTTAGTGGAGAGCACTTC+AGG | 0.305741 | 4_1:-51454771 | Msa0554210:CDS |
| CCACCACCACCGGGAACCTT+TGG | 0.317038 | 4_1:+51456105 | None:intergenic |
| TCTATCACAAGTTTGACTTT+TGG | 0.348882 | 4_1:-51453390 | Msa0554210:CDS |
| ATCATAATATGTGTTCCTTC+AGG | 0.372217 | 4_1:+51454840 | None:intergenic |
| TGCATTCAAGAAAACCTTGT+TGG | 0.399906 | 4_1:+51452722 | None:intergenic |
| GTCTATAAATGCAGGGTTGT+TGG | 0.403645 | 4_1:+51452797 | None:intergenic |
| ATGGAACATTTGAGAGATAA+GGG | 0.407423 | 4_1:-51452490 | Msa0554210:three_prime_UTR |
| AATGGAACATTTGAGAGATA+AGG | 0.407947 | 4_1:-51452491 | Msa0554210:three_prime_UTR |
| CACCACCACCGGGAACCTTT+GGG | 0.411013 | 4_1:+51456106 | None:intergenic |
| GTCAAGATCCCAAAGGTTCC+CGG | 0.419171 | 4_1:-51456114 | Msa0554210:CDS |
| TTCCTCAAGTCTATAAATGC+AGG | 0.423117 | 4_1:+51452789 | None:intergenic |
| ATTGTCTTTAACCGTGTTGT+TGG | 0.431088 | 4_1:-51455988 | Msa0554210:CDS |
| ATCCCAAAGGTTCCCGGTGG+TGG | 0.434393 | 4_1:-51456108 | Msa0554210:CDS |
| GCCAAAAGTGCTCAATTGAT+TGG | 0.439483 | 4_1:-51452831 | Msa0554210:CDS |
| GTTTCCATTCTCCATCTTTG+TGG | 0.440230 | 4_1:-51452421 | Msa0554210:three_prime_UTR |
| AGGCTGTTAGTCGAGAAATA+AGG | 0.442888 | 4_1:-51453464 | Msa0554210:CDS |
| TTCTTGAGCAGCAACCTGCT+TGG | 0.447199 | 4_1:+51453341 | None:intergenic |
| TCGTGCACGACCTCATTTAG+TGG | 0.454933 | 4_1:-51454784 | Msa0554210:CDS |
| TTTCCATTCTCCATCTTTGT+GGG | 0.455212 | 4_1:-51452420 | Msa0554210:three_prime_UTR |
| AGCGTTTCATGTATAATAGA+AGG | 0.462263 | 4_1:+51453728 | None:intergenic |
| CCAAAGGTTCCCGGTGGTGG+TGG | 0.465351 | 4_1:-51456105 | Msa0554210:CDS |
| AACACTTTGTATAATGTTGA+GGG | 0.467807 | 4_1:-51456024 | Msa0554210:CDS |
| GGATCTCTTGCTGAATCTCC+AGG | 0.469133 | 4_1:-51452697 | Msa0554210:CDS |
| ATCACAGGCCTCTCAAACCA+TGG | 0.472479 | 4_1:+51454816 | None:intergenic |
| ACATAACTATTTCTTTCCAC+TGG | 0.472566 | 4_1:+51452659 | None:intergenic |
| AGCAGAAATTCCACCACCAC+CGG | 0.480850 | 4_1:+51456095 | None:intergenic |
| ACCAACGGTCTATCGAACTC+TGG | 0.482518 | 4_1:-51453777 | Msa0554210:CDS |
| AGCTGCAATTGAAGCCAAGC+AGG | 0.488097 | 4_1:-51453355 | Msa0554210:CDS |
| TATCCCACAAAGATGGAGAA+TGG | 0.490042 | 4_1:+51452417 | None:intergenic |
| TAAGGAAGATATTGACTGAA+AGG | 0.495116 | 4_1:-51453446 | Msa0554210:CDS |
| TAGACCGTTGGTAATTGGTC+TGG | 0.503898 | 4_1:+51453788 | None:intergenic |
| ATTAAAGTTAGCATTCTTGG+TGG | 0.509506 | 4_1:-51456069 | Msa0554210:CDS |
| AAGGAAGATATTGACTGAAA+GGG | 0.510989 | 4_1:-51453445 | Msa0554210:CDS |
| AAATTACCATTTGGAGATCA+CGG | 0.515095 | 4_1:+51454745 | None:intergenic |
| TGGGTGAGAATTATAATGAA+AGG | 0.516327 | 4_1:-51453757 | Msa0554210:CDS |
| GAGGTCATATCCCACAAAGA+TGG | 0.517734 | 4_1:+51452410 | None:intergenic |
| GAGGAAAATTGAAGCTGCTA+GGG | 0.523704 | 4_1:-51452772 | Msa0554210:CDS |
| CTCTCAATTCAACATTGCAC+TGG | 0.532582 | 4_1:-51453421 | Msa0554210:CDS |
| GGGTGAGAATTATAATGAAA+GGG | 0.533630 | 4_1:-51453756 | Msa0554210:CDS |
| AAACACTTTGTATAATGTTG+AGG | 0.536366 | 4_1:-51456025 | Msa0554210:CDS |
| ACCCTGCATTTATAGACTTG+AGG | 0.536732 | 4_1:-51452791 | Msa0554210:CDS |
| AAGTGCTATTATTAGAGCAC+AGG | 0.538979 | 4_1:-51453271 | Msa0554210:intron |
| GTTGGTAATTGGTCTGGCAC+GGG | 0.547210 | 4_1:+51453794 | None:intergenic |
| TCCTCAAGTCTATAAATGCA+GGG | 0.549653 | 4_1:+51452790 | None:intergenic |
| TGAGGAAAATTGAAGCTGCT+AGG | 0.555994 | 4_1:-51452773 | Msa0554210:CDS |
| CGTTGGTAATTGGTCTGGCA+CGG | 0.557172 | 4_1:+51453793 | None:intergenic |
| TTATGATCCCATGGTTTGAG+AGG | 0.566462 | 4_1:-51454824 | Msa0554210:CDS |
| AATTGCAAATTCTGCCAACA+AGG | 0.567716 | 4_1:-51452736 | Msa0554210:CDS |
| AGGAAGCCGTGATCTCCAAA+TGG | 0.568285 | 4_1:-51454751 | Msa0554210:intron |
| TATATGCAGGTCTATCCTGA+AGG | 0.571690 | 4_1:-51454855 | Msa0554210:intron |
| TGTTGTTGGTGTCAAAGATA+AGG | 0.571696 | 4_1:-51455974 | Msa0554210:CDS |
| CCAACGGTCTATCGAACTCT+GGG | 0.576164 | 4_1:-51453776 | Msa0554210:CDS |
| GAAGTGCTCTCCACTAAATG+AGG | 0.579441 | 4_1:+51454774 | None:intergenic |
| AGCTGCTAGGGAAATCGCTA+AGG | 0.579747 | 4_1:-51452760 | Msa0554210:CDS |
| GAACACATATTATGATCCCA+TGG | 0.591378 | 4_1:-51454833 | Msa0554210:CDS |
| TTTCATGTATAATAGAAGGC+AGG | 0.592510 | 4_1:+51453732 | None:intergenic |
| CAGTGCAATGTTGAATTGAG+AGG | 0.593833 | 4_1:+51453422 | None:intergenic |
| TTCTATCAACTGTTCACATG+AGG | 0.601973 | 4_1:-51452571 | Msa0554210:three_prime_UTR |
| GATTTAAAATTGGAGTCCAG+TGG | 0.610027 | 4_1:-51452675 | Msa0554210:CDS |
| CCCAGAGTTCGATAGACCGT+TGG | 0.613107 | 4_1:+51453776 | None:intergenic |
| TCACAGGCCTCTCAAACCAT+GGG | 0.623389 | 4_1:+51454817 | None:intergenic |
| GCACGAACATCATAGATCAC+AGG | 0.624896 | 4_1:+51454801 | None:intergenic |
| GCAGAAATTCCACCACCACC+GGG | 0.625221 | 4_1:+51456096 | None:intergenic |
| ACATGAAACGCTCAAATCTG+TGG | 0.625780 | 4_1:-51453717 | Msa0554210:CDS |
| TCAGCTCATTACTCAGAGAG+AGG | 0.636764 | 4_1:-51453675 | Msa0554210:intron |
| TATCTTTGACACCAACAACA+CGG | 0.648126 | 4_1:+51455977 | None:intergenic |
| CAACAACGTCAAGATCCCAA+AGG | 0.651733 | 4_1:-51456121 | Msa0554210:CDS |
| ACTTTGTATAATGTTGAGGG+TGG | 0.664841 | 4_1:-51456021 | Msa0554210:CDS |
| TCTCTGAGTAATGAGCTGAC+TGG | 0.669211 | 4_1:+51453679 | None:intergenic |
| CGTGCCAGACCAATTACCAA+CGG | 0.684962 | 4_1:-51453792 | Msa0554210:CDS |
| AAGATCCCAAAGGTTCCCGG+TGG | 0.741647 | 4_1:-51456111 | Msa0554210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATAAGTCAATTTT+GGG | + | chr4_1:51452886-51452905 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATAAGTCAATTT+TGG | + | chr4_1:51452887-51452906 | None:intergenic | 10.0% |
| !! | TAATAATGAATATGAATTAT+GGG | + | chr4_1:51454481-51454500 | None:intergenic | 10.0% |
| !! | ATAATAATGAATATGAATTA+TGG | + | chr4_1:51454482-51454501 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTTGTATGATT+TGG | + | chr4_1:51455360-51455379 | None:intergenic | 10.0% |
| !!! | TTTTTAATAAGTCAATTTTG+GGG | + | chr4_1:51452885-51452904 | None:intergenic | 15.0% |
| !! | TATATTGATATACTACAATA+AGG | + | chr4_1:51453663-51453682 | None:intergenic | 15.0% |
| !!! | TTTAATCTTCTTCTTTGTTT+AGG | - | chr4_1:51453025-51453044 | Msa0554210:intron | 20.0% |
| !! | CAGTAATATGATAAAAATGA+CGG | + | chr4_1:51453187-51453206 | None:intergenic | 20.0% |
| !! | AAAAAGCTTCTATACTAAAA+AGG | + | chr4_1:51453236-51453255 | None:intergenic | 20.0% |
| !!! | TTTTAGTATAGAAGCTTTTT+AGG | - | chr4_1:51453236-51453255 | Msa0554210:intron | 20.0% |
| !!! | TTTAGTATAGAAGCTTTTTA+GGG | - | chr4_1:51453237-51453256 | Msa0554210:intron | 20.0% |
| !! | CATAAACTGAACTAAAAAAT+AGG | - | chr4_1:51453439-51453458 | Msa0554210:CDS | 20.0% |
| !!! | AACTAACAATTCAGTTTTTT+AGG | - | chr4_1:51453515-51453534 | Msa0554210:intron | 20.0% |
| !!! | CATATTAAAATAGGTTGAAT+AGG | + | chr4_1:51453607-51453626 | None:intergenic | 20.0% |
| !! | CTAACGAAACATATTAAAAT+AGG | + | chr4_1:51453616-51453635 | None:intergenic | 20.0% |
| !!! | CTATTTTAATATGTTTCGTT+AGG | - | chr4_1:51453614-51453633 | Msa0554210:intron | 20.0% |
| !! | AAACAAAAGAAATTACCATT+TGG | + | chr4_1:51453816-51453835 | None:intergenic | 20.0% |
| !!! | CTACTTTAATTTATAACGAT+GGG | + | chr4_1:51454233-51454252 | None:intergenic | 20.0% |
| !!! | TCTACTTTAATTTATAACGA+TGG | + | chr4_1:51454234-51454253 | None:intergenic | 20.0% |
| !! | TAGTGTACATAGTAATAATT+AGG | - | chr4_1:51454271-51454290 | Msa0554210:intron | 20.0% |
| !! | AGTGTACATAGTAATAATTA+GGG | - | chr4_1:51454272-51454291 | Msa0554210:intron | 20.0% |
| !! | AACATAAATTTCGAATTTCA+TGG | + | chr4_1:51454540-51454559 | None:intergenic | 20.0% |
| !!! | TCTAAAATGATCCAAATTAT+AGG | - | chr4_1:51455065-51455084 | Msa0554210:intron | 20.0% |
| !! | TTTGAGAAAAAAGTTCAATA+GGG | + | chr4_1:51455628-51455647 | None:intergenic | 20.0% |
| !!! | TTTTGAGAAAAAAGTTCAAT+AGG | + | chr4_1:51455629-51455648 | None:intergenic | 20.0% |
| !!! | GATGTTAAATAAGGTTTTAT+GGG | - | chr4_1:51456081-51456100 | Msa0554210:CDS | 20.0% |
| ! | TTGATTAAAGTTAGCATTCT+TGG | - | chr4_1:51452477-51452496 | Msa0554210:three_prime_UTR | 25.0% |
| ! | AAACACTTTGTATAATGTTG+AGG | - | chr4_1:51452524-51452543 | Msa0554210:three_prime_UTR | 25.0% |
| ! | AACACTTTGTATAATGTTGA+GGG | - | chr4_1:51452525-51452544 | Msa0554210:three_prime_UTR | 25.0% |
| ! | TAACTAACAGTGAATGAAAA+TGG | + | chr4_1:51452606-51452625 | None:intergenic | 25.0% |
| !!! | AGAATATCGTTTTAGATGAT+TGG | - | chr4_1:51452953-51452972 | Msa0554210:intron | 25.0% |
| !!! | GAATATCGTTTTAGATGATT+GGG | - | chr4_1:51452954-51452973 | Msa0554210:intron | 25.0% |
| ! | CTGATTCTAAATTGAAAGTT+CGG | - | chr4_1:51453476-51453495 | Msa0554210:intron | 25.0% |
| ! | ACTTTAGTACACTTGATTAT+AGG | - | chr4_1:51453875-51453894 | Msa0554210:intron | 25.0% |
| !! | GATAATAGCAACTTATCTTT+TGG | - | chr4_1:51453897-51453916 | Msa0554210:intron | 25.0% |
| ! | CAACATTAAAATGACTTCAA+TGG | + | chr4_1:51453969-51453988 | None:intergenic | 25.0% |
| ! | TATGTGTGTAAAAACCTTAA+AGG | + | chr4_1:51454136-51454155 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGTAATGTCCT+TGG | + | chr4_1:51454181-51454200 | None:intergenic | 25.0% |
| ! | TAAAGTAGAATATGATGCTT+TGG | - | chr4_1:51454245-51454264 | Msa0554210:intron | 25.0% |
| ! | GTGTACATAGTAATAATTAG+GGG | - | chr4_1:51454273-51454292 | Msa0554210:intron | 25.0% |
| ! | TGTACATAGTAATAATTAGG+GGG | - | chr4_1:51454274-51454293 | Msa0554210:intron | 25.0% |
| ! | AATGTGATACAATTGAGAAT+TGG | + | chr4_1:51454437-51454456 | None:intergenic | 25.0% |
| ! | ACACAGTAATAAAGTTAGAA+TGG | + | chr4_1:51454599-51454618 | None:intergenic | 25.0% |
| ! | TAACTTTATTACTGTGTAGA+CGG | - | chr4_1:51454602-51454621 | Msa0554210:intron | 25.0% |
| ! | ATTGTGCATAAGAAAAATGT+GGG | + | chr4_1:51454638-51454657 | None:intergenic | 25.0% |
| ! | TATTGTGCATAAGAAAAATG+TGG | + | chr4_1:51454639-51454658 | None:intergenic | 25.0% |
| ! | CATTTCCATGTAATCTATTA+TGG | - | chr4_1:51454685-51454704 | Msa0554210:intron | 25.0% |
| ! | AAGATCCATAATAGATTACA+TGG | + | chr4_1:51454693-51454712 | None:intergenic | 25.0% |
| ! | TCAACTAATACTGGATTAAT+TGG | - | chr4_1:51454930-51454949 | Msa0554210:intron | 25.0% |
| ! | CAACTAATACTGGATTAATT+GGG | - | chr4_1:51454931-51454950 | Msa0554210:intron | 25.0% |
| ! | TTGAGAAAAAAGTTCAATAG+GGG | + | chr4_1:51455627-51455646 | None:intergenic | 25.0% |
| ! | AAAAGTAACTCCTATGTATT+GGG | + | chr4_1:51455652-51455671 | None:intergenic | 25.0% |
| ! | AAAAAGTAACTCCTATGTAT+TGG | + | chr4_1:51455653-51455672 | None:intergenic | 25.0% |
| ! | TTCAACTTCTCATTACTTAA+TGG | - | chr4_1:51455671-51455690 | Msa0554210:intron | 25.0% |
| !!! | ATGGTTTATTTTTGACATAC+AGG | - | chr4_1:51455690-51455709 | Msa0554210:intron | 25.0% |
| !!! | TGGTTTATTTTTGACATACA+GGG | - | chr4_1:51455691-51455710 | Msa0554210:intron | 25.0% |
| !! | GATTGTCATTATCTTTTCAA+TGG | - | chr4_1:51456040-51456059 | Msa0554210:CDS | 25.0% |
| !! | GGATGTTAAATAAGGTTTTA+TGG | - | chr4_1:51456080-51456099 | Msa0554210:CDS | 25.0% |
| ATTAAAGTTAGCATTCTTGG+TGG | - | chr4_1:51452480-51452499 | Msa0554210:three_prime_UTR | 30.0% | |
| ATTCTATCATCTCTACAGTA+GGG | + | chr4_1:51452938-51452957 | None:intergenic | 30.0% | |
| TATTCTATCATCTCTACAGT+AGG | + | chr4_1:51452939-51452958 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCAGTCTCATGAT+CGG | - | chr4_1:51453086-51453105 | Msa0554210:intron | 30.0% |
| TCATGTTTCCATAACATAGA+CGG | + | chr4_1:51453128-51453147 | None:intergenic | 30.0% | |
| ! | TTTAGTTCACAGTTTCAGTT+TGG | - | chr4_1:51453549-51453568 | Msa0554210:intron | 30.0% |
| ATAAGGTTACTAGTCAACAT+AGG | + | chr4_1:51453646-51453665 | None:intergenic | 30.0% | |
| ! | TAGTATGCCTTTTTATATGC+AGG | - | chr4_1:51453681-51453700 | Msa0554210:CDS | 30.0% |
| ATCATAATATGTGTTCCTTC+AGG | + | chr4_1:51453712-51453731 | None:intergenic | 30.0% | |
| AAATTACCATTTGGAGATCA+CGG | + | chr4_1:51453807-51453826 | None:intergenic | 30.0% | |
| TAAGAACAAGAAAAGATAGC+AGG | + | chr4_1:51453841-51453860 | None:intergenic | 30.0% | |
| ATCAAGTGTACTAAAGTACA+TGG | + | chr4_1:51453872-51453891 | None:intergenic | 30.0% | |
| !!! | CTTATCTTTTGGTTTGAAGT+TGG | - | chr4_1:51453908-51453927 | Msa0554210:intron | 30.0% |
| !! | TTCAATGGACTAAACTGAAA+GGG | + | chr4_1:51453954-51453973 | None:intergenic | 30.0% |
| !! | AAAGGACACTCATTTTGAAA+CGG | + | chr4_1:51454118-51454137 | None:intergenic | 30.0% |
| TTCAAAATGAGTGTCCTTTA+AGG | - | chr4_1:51454119-51454138 | Msa0554210:intron | 30.0% | |
| AAATGCAATAATGTTGTCCA+AGG | - | chr4_1:51454161-51454180 | Msa0554210:intron | 30.0% | |
| AAATGCATCAATAGGTAACA+AGG | + | chr4_1:51454210-51454229 | None:intergenic | 30.0% | |
| ACTAAATTGAAAAGCGAGAA+TGG | - | chr4_1:51454317-51454336 | Msa0554210:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+TGG | - | chr4_1:51454375-51454394 | Msa0554210:intron | 30.0% |
| TTGTGCATAAGAAAAATGTG+GGG | + | chr4_1:51454637-51454656 | None:intergenic | 30.0% | |
| TGAAACTGTGATACAGATTA+TGG | + | chr4_1:51454667-51454686 | None:intergenic | 30.0% | |
| !!! | TATGGATCTTTTATTTTGCC+AGG | - | chr4_1:51454703-51454722 | Msa0554210:intron | 30.0% |
| !! | TTATTTTGCCAGGTGAAAAT+TGG | - | chr4_1:51454713-51454732 | Msa0554210:intron | 30.0% |
| TGGGTGAGAATTATAATGAA+AGG | - | chr4_1:51454792-51454811 | Msa0554210:CDS | 30.0% | |
| GGGTGAGAATTATAATGAAA+GGG | - | chr4_1:51454793-51454812 | Msa0554210:CDS | 30.0% | |
| TTTCATGTATAATAGAAGGC+AGG | + | chr4_1:51454820-51454839 | None:intergenic | 30.0% | |
| AGCGTTTCATGTATAATAGA+AGG | + | chr4_1:51454824-51454843 | None:intergenic | 30.0% | |
| GTATTAGTTGAACAGAAGAT+AGG | + | chr4_1:51454921-51454940 | None:intergenic | 30.0% | |
| ATCTTCTGTTCAACTAATAC+TGG | - | chr4_1:51454921-51454940 | Msa0554210:intron | 30.0% | |
| ATTCCAACTGATATGTAAAG+AGG | + | chr4_1:51454963-51454982 | None:intergenic | 30.0% | |
| AAAATGAATCACAACCATAC+AGG | - | chr4_1:51455028-51455047 | Msa0554210:intron | 30.0% | |
| ! | TAAGGAAGATATTGACTGAA+AGG | - | chr4_1:51455103-51455122 | Msa0554210:intron | 30.0% |
| ! | AAGGAAGATATTGACTGAAA+GGG | - | chr4_1:51455104-51455123 | Msa0554210:intron | 30.0% |
| !! | TCTATCACAAGTTTGACTTT+TGG | - | chr4_1:51455159-51455178 | Msa0554210:intron | 30.0% |
| !! | CTATCACAAGTTTGACTTTT+GGG | - | chr4_1:51455160-51455179 | Msa0554210:intron | 30.0% |
| TGTTTGAGTGATATAAACTC+TGG | - | chr4_1:51455425-51455444 | Msa0554210:intron | 30.0% | |
| GATATAAACTCTGGATAATC+AGG | - | chr4_1:51455434-51455453 | Msa0554210:intron | 30.0% | |
| ATCAAATAGGTTCATTCAAG+AGG | + | chr4_1:51455547-51455566 | None:intergenic | 30.0% | |
| TTTCTCAAAACCCAATACAT+AGG | - | chr4_1:51455639-51455658 | Msa0554210:intron | 30.0% | |
| ! | GAATCTCCAGGATTTAAAAT+TGG | - | chr4_1:51455864-51455883 | Msa0554210:intron | 30.0% |
| ! | ACATAACTATTTCTTTCCAC+TGG | + | chr4_1:51455893-51455912 | None:intergenic | 30.0% |
| AATGGAACATTTGAGAGATA+AGG | - | chr4_1:51456058-51456077 | Msa0554210:CDS | 30.0% | |
| ATGGAACATTTGAGAGATAA+GGG | - | chr4_1:51456059-51456078 | Msa0554210:CDS | 30.0% | |
| GAGATAAGGGATGTTAAATA+AGG | - | chr4_1:51456072-51456091 | Msa0554210:CDS | 30.0% | |
| ACTTTGTATAATGTTGAGGG+TGG | - | chr4_1:51452528-51452547 | Msa0554210:three_prime_UTR | 35.0% | |
| ATTGTCTTTAACCGTGTTGT+TGG | - | chr4_1:51452561-51452580 | Msa0554210:three_prime_UTR | 35.0% | |
| TATCTTTGACACCAACAACA+CGG | + | chr4_1:51452575-51452594 | None:intergenic | 35.0% | |
| !! | TGTTGTTGGTGTCAAAGATA+AGG | - | chr4_1:51452575-51452594 | Msa0554210:three_prime_UTR | 35.0% |
| ACACTTATTGAAGATGTGTC+CGG | + | chr4_1:51452672-51452691 | None:intergenic | 35.0% | |
| ACACATCTTCAATAAGTGTC+AGG | - | chr4_1:51452673-51452692 | Msa0554210:CDS | 35.0% | |
| CACATCTTCAATAAGTGTCA+GGG | - | chr4_1:51452674-51452693 | Msa0554210:CDS | 35.0% | |
| ACATCTTCAATAAGTGTCAG+GGG | - | chr4_1:51452675-51452694 | Msa0554210:CDS | 35.0% | |
| ! | CTTCTTTGTTTAGGTTCTCA+TGG | - | chr4_1:51453034-51453053 | Msa0554210:intron | 35.0% |
| ATTTCATGCCGTCTATGTTA+TGG | - | chr4_1:51453117-51453136 | Msa0554210:intron | 35.0% | |
| AAAAAACTTCTGCTCTGGTT+GGG | + | chr4_1:51453161-51453180 | None:intergenic | 35.0% | |
| AGATGAAGTGACAGTTGTAT+TGG | + | chr4_1:51453351-51453370 | None:intergenic | 35.0% | |
| GTCAAAAACTGAACCAAACT+TGG | - | chr4_1:51453384-51453403 | Msa0554210:CDS | 35.0% | |
| ACTTGAACTCTATCCAAGTT+TGG | + | chr4_1:51453400-51453419 | None:intergenic | 35.0% | |
| !!! | CAGTTTTTTAGGTTCAGTTC+TGG | - | chr4_1:51453526-51453545 | Msa0554210:intron | 35.0% |
| GGATAGACCTGCATATAAAA+AGG | + | chr4_1:51453691-51453710 | None:intergenic | 35.0% | |
| GAACACATATTATGATCCCA+TGG | - | chr4_1:51453716-51453735 | Msa0554210:CDS | 35.0% | |
| !! | CTTCAATGGACTAAACTGAA+AGG | + | chr4_1:51453955-51453974 | None:intergenic | 35.0% |
| CATAGATGGCGTGATTTATA+TGG | + | chr4_1:51454018-51454037 | None:intergenic | 35.0% | |
| TATAAATCACGCCATCTATG+TGG | - | chr4_1:51454018-51454037 | Msa0554210:intron | 35.0% | |
| ATAAATCACGCCATCTATGT+GGG | - | chr4_1:51454019-51454038 | Msa0554210:intron | 35.0% | |
| ATATGATACATAAGCCCACA+AGG | + | chr4_1:51454052-51454071 | None:intergenic | 35.0% | |
| !!! | AAGGACACTCATTTTGAAAC+GGG | + | chr4_1:51454117-51454136 | None:intergenic | 35.0% |
| !! | TAATAATTAGGGGGTACTGT+TGG | - | chr4_1:51454283-51454302 | Msa0554210:intron | 35.0% |
| !!! | GACACTCATTTTGAAATGGA+GGG | - | chr4_1:51454379-51454398 | Msa0554210:intron | 35.0% |
| GTGATACAATTGAGAATTGG+TGG | + | chr4_1:51454434-51454453 | None:intergenic | 35.0% | |
| ATGCCTCTTTACATATCAGT+TGG | - | chr4_1:51454957-51454976 | Msa0554210:intron | 35.0% | |
| TCGACTAACAGCCTATAATT+TGG | + | chr4_1:51455079-51455098 | None:intergenic | 35.0% | |
| ! | AAGTGCTATTATTAGAGCAC+AGG | - | chr4_1:51455278-51455297 | Msa0554210:intron | 35.0% |
| AAATGAAAAGATCGCTGCAA+TGG | - | chr4_1:51455386-51455405 | Msa0554210:intron | 35.0% | |
| GTTCATTCAAGAGGAAAAAG+TGG | + | chr4_1:51455538-51455557 | None:intergenic | 35.0% | |
| ! | GAATGAACCTATTTGATGAC+TGG | - | chr4_1:51455550-51455569 | Msa0554210:intron | 35.0% |
| ! | ACCAATCAATTGAGCACTTT+TGG | + | chr4_1:51455722-51455741 | None:intergenic | 35.0% |
| TCCTCAAGTCTATAAATGCA+GGG | + | chr4_1:51455762-51455781 | None:intergenic | 35.0% | |
| TTCCTCAAGTCTATAAATGC+AGG | + | chr4_1:51455763-51455782 | None:intergenic | 35.0% | |
| AATTGCAAATTCTGCCAACA+AGG | - | chr4_1:51455813-51455832 | Msa0554210:intron | 35.0% | |
| TGCATTCAAGAAAACCTTGT+TGG | + | chr4_1:51455830-51455849 | None:intergenic | 35.0% | |
| ! | TGGACTCCAATTTTAAATCC+TGG | + | chr4_1:51455873-51455892 | None:intergenic | 35.0% |
| ! | GATTTAAAATTGGAGTCCAG+TGG | - | chr4_1:51455874-51455893 | Msa0554210:intron | 35.0% |
| TTCTATCAACTGTTCACATG+AGG | - | chr4_1:51455978-51455997 | Msa0554210:CDS | 35.0% | |
| CTGCTTTGCAAACTGAAATA+TGG | - | chr4_1:51456003-51456022 | Msa0554210:CDS | 35.0% | |
| CATCTTCAATAAGTGTCAGG+GGG | - | chr4_1:51452676-51452695 | Msa0554210:CDS | 40.0% | |
| ! | GCTGATTTAAAGTGAGTTGC+AGG | - | chr4_1:51452738-51452757 | Msa0554210:CDS | 40.0% |
| GATGATTGGGTCATGTATGA+AGG | - | chr4_1:51452967-51452986 | Msa0554210:intron | 40.0% | |
| CAAAAAACTTCTGCTCTGGT+TGG | + | chr4_1:51453162-51453181 | None:intergenic | 40.0% | |
| GGTTCAAAAAACTTCTGCTC+TGG | + | chr4_1:51453166-51453185 | None:intergenic | 40.0% | |
| TATATGCAGGTCTATCCTGA+AGG | - | chr4_1:51453694-51453713 | Msa0554210:CDS | 40.0% | |
| TTATGATCCCATGGTTTGAG+AGG | - | chr4_1:51453725-51453744 | Msa0554210:CDS | 40.0% | |
| AAACTGAAAGGGTAAGGTGA+GGG | + | chr4_1:51453943-51453962 | None:intergenic | 40.0% | |
| TAAACTGAAAGGGTAAGGTG+AGG | + | chr4_1:51453944-51453963 | None:intergenic | 40.0% | |
| TGGACTAAACTGAAAGGGTA+AGG | + | chr4_1:51453949-51453968 | None:intergenic | 40.0% | |
| !!! | AGGACACTCATTTTGAAACG+GGG | + | chr4_1:51454116-51454135 | None:intergenic | 40.0% |
| ACGATGGGAAATGCATCAAT+AGG | + | chr4_1:51454218-51454237 | None:intergenic | 40.0% | |
| !!! | CGACACTCATTTTGAAATGG+AGG | - | chr4_1:51454378-51454397 | Msa0554210:intron | 40.0% |
| ! | CTCTAAGTCCAATTTTCACC+TGG | + | chr4_1:51454724-51454743 | None:intergenic | 40.0% |
| !! | TTCGATAGACCGTTGGTAAT+TGG | + | chr4_1:51454769-51454788 | None:intergenic | 40.0% |
| ACATGAAACGCTCAAATCTG+TGG | - | chr4_1:51454832-51454851 | Msa0554210:CDS | 40.0% | |
| AATAATCAGTCTCGCCTGTA+TGG | + | chr4_1:51455045-51455064 | None:intergenic | 40.0% | |
| AGGCTGTTAGTCGAGAAATA+AGG | - | chr4_1:51455085-51455104 | Msa0554210:intron | 40.0% | |
| CAGTGCAATGTTGAATTGAG+AGG | + | chr4_1:51455130-51455149 | None:intergenic | 40.0% | |
| CTCTCAATTCAACATTGCAC+TGG | - | chr4_1:51455128-51455147 | Msa0554210:intron | 40.0% | |
| !! | TCACAAGTTTGACTTTTGGG+AGG | - | chr4_1:51455163-51455182 | Msa0554210:intron | 40.0% |
| !! | CACAAGTTTGACTTTTGGGA+GGG | - | chr4_1:51455164-51455183 | Msa0554210:intron | 40.0% |
| TTCAAGAGGAAAAAGTGGAG+AGG | + | chr4_1:51455533-51455552 | None:intergenic | 40.0% | |
| TGCATCACCAGTCATCAAAT+AGG | + | chr4_1:51455560-51455579 | None:intergenic | 40.0% | |
| ! | ATTTGATGACTGGTGATGCA+TGG | - | chr4_1:51455560-51455579 | Msa0554210:intron | 40.0% |
| GATGCATGGATAAGTTGTCA+AGG | - | chr4_1:51455574-51455593 | Msa0554210:intron | 40.0% | |
| CATGGATAAGTTGTCAAGGA+AGG | - | chr4_1:51455578-51455597 | Msa0554210:intron | 40.0% | |
| TTCAATAGGGGTCATGTTGA+AGG | + | chr4_1:51455615-51455634 | None:intergenic | 40.0% | |
| !! | GCCAAAAGTGCTCAATTGAT+TGG | - | chr4_1:51455718-51455737 | Msa0554210:intron | 40.0% |
| GTCTATAAATGCAGGGTTGT+TGG | + | chr4_1:51455755-51455774 | None:intergenic | 40.0% | |
| ACCCTGCATTTATAGACTTG+AGG | - | chr4_1:51455758-51455777 | Msa0554210:intron | 40.0% | |
| TGAGGAAAATTGAAGCTGCT+AGG | - | chr4_1:51455776-51455795 | Msa0554210:intron | 40.0% | |
| GAGGAAAATTGAAGCTGCTA+GGG | - | chr4_1:51455777-51455796 | Msa0554210:intron | 40.0% | |
| ! | CAAGGTTTTCTTGAATGCAG+AGG | - | chr4_1:51455831-51455850 | Msa0554210:intron | 40.0% |
| GTTTCCATTCTCCATCTTTG+TGG | - | chr4_1:51456128-51456147 | Msa0554210:CDS | 40.0% | |
| CAACAACGTCAAGATCCCAA+AGG | - | chr4_1:51452428-51452447 | Msa0554210:three_prime_UTR | 45.0% | |
| ACTCCAAAGACCTGCATACT+TGG | - | chr4_1:51453323-51453342 | Msa0554210:CDS | 45.0% | |
| CTCCAAAGACCTGCATACTT+GGG | - | chr4_1:51453324-51453343 | Msa0554210:CDS | 45.0% | |
| TGTATTGGACCCAAGTATGC+AGG | + | chr4_1:51453336-51453355 | None:intergenic | 45.0% | |
| GCACGAACATCATAGATCAC+AGG | + | chr4_1:51453751-51453770 | None:intergenic | 45.0% | |
| ! | GAAGTGCTCTCCACTAAATG+AGG | + | chr4_1:51453778-51453797 | None:intergenic | 45.0% |
| !! | CATTTAGTGGAGAGCACTTC+AGG | - | chr4_1:51453778-51453797 | Msa0554210:CDS | 45.0% |
| ! | ACGGGGGGAGTATATGAAAT+AGG | + | chr4_1:51454099-51454118 | None:intergenic | 45.0% |
| !!! | GACACTCATTTTGAAACGGG+GGG | + | chr4_1:51454114-51454133 | None:intergenic | 45.0% |
| !!! | GGACACTCATTTTGAAACGG+GGG | + | chr4_1:51454115-51454134 | None:intergenic | 45.0% |
| ! | GAGAATTGGTGGTTCAGTTC+AGG | + | chr4_1:51454423-51454442 | None:intergenic | 45.0% |
| !! | TAGACCGTTGGTAATTGGTC+TGG | + | chr4_1:51454764-51454783 | None:intergenic | 45.0% |
| TCTCTGAGTAATGAGCTGAC+TGG | + | chr4_1:51454873-51454892 | None:intergenic | 45.0% | |
| TCAGCTCATTACTCAGAGAG+AGG | - | chr4_1:51454874-51454893 | Msa0554210:intron | 45.0% | |
| ATCGCTGCAATGGTATTTGC+TGG | - | chr4_1:51455396-51455415 | Msa0554210:intron | 45.0% | |
| GAGGAAAAAGTGGAGAGGAA+GGG | + | chr4_1:51455528-51455547 | None:intergenic | 45.0% | |
| AGAGGAAAAAGTGGAGAGGA+AGG | + | chr4_1:51455529-51455548 | None:intergenic | 45.0% | |
| !!! | TATATTTTTTTAAAAAACAA+CGG | + | chr4_1:51455327-51455346 | None:intergenic | 5.0% |
| GTCAAGATCCCAAAGGTTCC+CGG | - | chr4_1:51452435-51452454 | Msa0554210:three_prime_UTR | 50.0% | |
| AGCAGAAATTCCACCACCAC+CGG | + | chr4_1:51452457-51452476 | None:intergenic | 50.0% | |
| !! | CTTGGTGGACTTGCTGTCTA+TGG | - | chr4_1:51452495-51452514 | Msa0554210:three_prime_UTR | 50.0% |
| GACCCAAGTATGCAGGTCTT+TGG | + | chr4_1:51453329-51453348 | None:intergenic | 50.0% | |
| TCACAGGCCTCTCAAACCAT+GGG | + | chr4_1:51453735-51453754 | None:intergenic | 50.0% | |
| ATCACAGGCCTCTCAAACCA+TGG | + | chr4_1:51453736-51453755 | None:intergenic | 50.0% | |
| TCGTGCACGACCTCATTTAG+TGG | - | chr4_1:51453765-51453784 | Msa0554210:CDS | 50.0% | |
| AGGAAGCCGTGATCTCCAAA+TGG | - | chr4_1:51453798-51453817 | Msa0554210:CDS | 50.0% | |
| TGAAAGGGTAAGGTGAGGGA+AGG | + | chr4_1:51453939-51453958 | None:intergenic | 50.0% | |
| AGGTCAACAGCCCACATAGA+TGG | + | chr4_1:51454032-51454051 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTTGACCTTG+TGG | - | chr4_1:51454034-51454053 | Msa0554210:intron | 50.0% |
| ! | ATGTGGGCTGTTGACCTTGT+GGG | - | chr4_1:51454035-51454054 | Msa0554210:intron | 50.0% |
| !! | GTTGGTAATTGGTCTGGCAC+GGG | + | chr4_1:51454758-51454777 | None:intergenic | 50.0% |
| !! | CGTTGGTAATTGGTCTGGCA+CGG | + | chr4_1:51454759-51454778 | None:intergenic | 50.0% |
| CGTGCCAGACCAATTACCAA+CGG | - | chr4_1:51454757-51454776 | Msa0554210:CDS | 50.0% | |
| ACCAACGGTCTATCGAACTC+TGG | - | chr4_1:51454772-51454791 | Msa0554210:CDS | 50.0% | |
| CCAACGGTCTATCGAACTCT+GGG | - | chr4_1:51454773-51454792 | Msa0554210:CDS | 50.0% | |
| AGCTGCAATTGAAGCCAAGC+AGG | - | chr4_1:51455194-51455213 | Msa0554210:intron | 50.0% | |
| TTCTTGAGCAGCAACCTGCT+TGG | + | chr4_1:51455211-51455230 | None:intergenic | 50.0% | |
| AGCTGCTAGGGAAATCGCTA+AGG | - | chr4_1:51455789-51455808 | Msa0554210:intron | 50.0% | |
| GGATCTCTTGCTGAATCTCC+AGG | - | chr4_1:51455852-51455871 | Msa0554210:intron | 50.0% | |
| AAGATCCCAAAGGTTCCCGG+TGG | - | chr4_1:51452438-51452457 | Msa0554210:three_prime_UTR | 55.0% | |
| GCAGAAATTCCACCACCACC+GGG | + | chr4_1:51452456-51452475 | None:intergenic | 55.0% | |
| CACGCATCAGTGTCAGACAC+CGG | - | chr4_1:51452650-51452669 | Msa0554210:exon | 55.0% | |
| CCCAGAGTTCGATAGACCGT+TGG | + | chr4_1:51454776-51454795 | None:intergenic | 55.0% | |
| AAGTGGAGAGGAAGGGAGCA+GGG | + | chr4_1:51455521-51455540 | None:intergenic | 55.0% | |
| AAAGTGGAGAGGAAGGGAGC+AGG | + | chr4_1:51455522-51455541 | None:intergenic | 55.0% | |
| ATCCCAAAGGTTCCCGGTGG+TGG | - | chr4_1:51452441-51452460 | Msa0554210:three_prime_UTR | 60.0% | |
| CACCACCACCGGGAACCTTT+GGG | + | chr4_1:51452446-51452465 | None:intergenic | 60.0% | |
| CCACCACCACCGGGAACCTT+TGG | + | chr4_1:51452447-51452466 | None:intergenic | 65.0% | |
| ! | CCAAAGGTTCCCGGTGGTGG+TGG | - | chr4_1:51452444-51452463 | Msa0554210:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 51452420 | 51456151 | 51452420 | ID=Msa0554210;Name=Msa0554210 |
| chr4_1 | mRNA | 51452420 | 51456151 | 51452420 | ID=Msa0554210-mRNA-1;Parent=Msa0554210;Name=Msa0554210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.75|0.8|1|1|1|5|245|297 |
| chr4_1 | exon | 51452420 | 51452859 | 51452420 | ID=Msa0554210-mRNA-1:exon:14728;Parent=Msa0554210-mRNA-1 |
| chr4_1 | exon | 51453272 | 51453484 | 51453272 | ID=Msa0554210-mRNA-1:exon:14727;Parent=Msa0554210-mRNA-1 |
| chr4_1 | exon | 51453676 | 51453846 | 51453676 | ID=Msa0554210-mRNA-1:exon:14726;Parent=Msa0554210-mRNA-1 |
| chr4_1 | exon | 51454752 | 51454868 | 51454752 | ID=Msa0554210-mRNA-1:exon:14725;Parent=Msa0554210-mRNA-1 |
| chr4_1 | exon | 51455954 | 51456151 | 51455954 | ID=Msa0554210-mRNA-1:exon:14724;Parent=Msa0554210-mRNA-1 |
| chr4_1 | CDS | 51455954 | 51456151 | 51455954 | ID=Msa0554210-mRNA-1:cds;Parent=Msa0554210-mRNA-1 |
| chr4_1 | CDS | 51454752 | 51454868 | 51454752 | ID=Msa0554210-mRNA-1:cds;Parent=Msa0554210-mRNA-1 |
| chr4_1 | CDS | 51453676 | 51453846 | 51453676 | ID=Msa0554210-mRNA-1:cds;Parent=Msa0554210-mRNA-1 |
| chr4_1 | CDS | 51453272 | 51453484 | 51453272 | ID=Msa0554210-mRNA-1:cds;Parent=Msa0554210-mRNA-1 |
| chr4_1 | CDS | 51452665 | 51452859 | 51452665 | ID=Msa0554210-mRNA-1:cds;Parent=Msa0554210-mRNA-1 |
| chr4_1 | three_prime_UTR | 51452420 | 51452664 | 51452420 | ID=Msa0554210-mRNA-1:three_prime_utr;Parent=Msa0554210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
