Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0208000 | XP_039686515.1 | 97.468 | 79 | 2 | 0 | 1 | 79 | 1 | 79 | 4.29e-44 | 157 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0208000 | sp|Q9FH28|DNJ49_ARATH | 47.761 | 67 | 34 | 1 | 1 | 66 | 1 | 67 | 2.07e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0208000 | I3S7I5 | 97.468 | 79 | 2 | 0 | 1 | 79 | 1 | 79 | 2.05e-44 | 157 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003220 | Msa0208000 | 0.813527 | 2.447330e-51 | -8.615850e-47 |
Msa0003630 | Msa0208000 | 0.804917 | 1.715677e-49 | -8.615850e-47 |
Msa0004540 | Msa0208000 | 0.802897 | 4.511347e-49 | -8.615850e-47 |
Msa0008220 | Msa0208000 | 0.811630 | 6.360373e-51 | -8.615850e-47 |
Msa0008840 | Msa0208000 | 0.808181 | 3.513766e-50 | -8.615850e-47 |
Msa0010770 | Msa0208000 | 0.815286 | 9.992279e-52 | -8.615850e-47 |
Msa0017320 | Msa0208000 | 0.842830 | 2.034937e-58 | -8.615850e-47 |
Msa0026660 | Msa0208000 | 0.804103 | 2.536610e-49 | -8.615850e-47 |
Msa0030300 | Msa0208000 | 0.802932 | 4.437246e-49 | -8.615850e-47 |
Msa0033880 | Msa0208000 | 0.825777 | 3.896753e-54 | -8.615850e-47 |
Msa0041690 | Msa0208000 | 0.848062 | 7.784777e-60 | -8.615850e-47 |
Msa0047250 | Msa0208000 | 0.832491 | 9.171636e-56 | -8.615850e-47 |
Msa0055100 | Msa0208000 | 0.808965 | 2.390064e-50 | -8.615850e-47 |
Msa0057370 | Msa0208000 | 0.804874 | 1.752016e-49 | -8.615850e-47 |
Msa0058310 | Msa0208000 | 0.805559 | 1.259039e-49 | -8.615850e-47 |
Msa0064920 | Msa0208000 | 0.807099 | 5.962840e-50 | -8.615850e-47 |
Msa0072170 | Msa0208000 | 0.821756 | 3.408695e-53 | -8.615850e-47 |
Msa0074750 | Msa0208000 | 0.814350 | 1.610964e-51 | -8.615850e-47 |
Msa0081650 | Msa0208000 | 0.821624 | 3.657360e-53 | -8.615850e-47 |
Msa0090660 | Msa0208000 | 0.819257 | 1.277307e-52 | -8.615850e-47 |
Msa0092170 | Msa0208000 | 0.810458 | 1.141312e-50 | -8.615850e-47 |
Msa0096580 | Msa0208000 | 0.801264 | 9.773627e-49 | -8.615850e-47 |
Msa0101180 | Msa0208000 | 0.808991 | 2.359111e-50 | -8.615850e-47 |
Msa0119320 | Msa0208000 | 0.831336 | 1.768595e-55 | -8.615850e-47 |
Msa0120540 | Msa0208000 | 0.812310 | 4.521632e-51 | -8.615850e-47 |
Msa0126230 | Msa0208000 | 0.815411 | 9.375398e-52 | -8.615850e-47 |
Msa0127040 | Msa0208000 | 0.842081 | 3.215153e-58 | -8.615850e-47 |
Msa0127850 | Msa0208000 | 0.826328 | 2.881197e-54 | -8.615850e-47 |
Msa0138160 | Msa0208000 | 0.827233 | 1.752307e-54 | -8.615850e-47 |
Msa0138640 | Msa0208000 | 0.805516 | 1.285539e-49 | -8.615850e-47 |
Msa0143510 | Msa0208000 | 0.810040 | 1.404324e-50 | -8.615850e-47 |
Msa0145150 | Msa0208000 | 0.837320 | 5.572835e-57 | -8.615850e-47 |
Msa0145740 | Msa0208000 | 0.801802 | 7.580221e-49 | -8.615850e-47 |
Msa0146080 | Msa0208000 | 0.812170 | 4.850708e-51 | -8.615850e-47 |
Msa0165440 | Msa0208000 | 0.807801 | 4.232884e-50 | -8.615850e-47 |
Msa0171980 | Msa0208000 | 0.826790 | 2.235331e-54 | -8.615850e-47 |
Msa0174000 | Msa0208000 | 0.840197 | 1.005455e-57 | -8.615850e-47 |
Msa0192640 | Msa0208000 | 0.814364 | 1.599800e-51 | -8.615850e-47 |
Msa0193600 | Msa0208000 | 0.817567 | 3.084017e-52 | -8.615850e-47 |
Msa0208000 | Msa0221600 | 0.809466 | 1.865822e-50 | -8.615850e-47 |
Msa0208000 | Msa0229360 | 0.812816 | 3.504171e-51 | -8.615850e-47 |
Msa0208000 | Msa0236770 | 0.814412 | 1.561143e-51 | -8.615850e-47 |
Msa0208000 | Msa0244380 | 0.807268 | 5.491708e-50 | -8.615850e-47 |
Msa0208000 | Msa0244980 | 0.801367 | 9.309172e-49 | -8.615850e-47 |
Msa0208000 | Msa0252240 | 0.806571 | 7.712529e-50 | -8.615850e-47 |
Msa0208000 | Msa0265160 | 0.818140 | 2.289397e-52 | -8.615850e-47 |
Msa0208000 | Msa0273650 | 0.819168 | 1.338182e-52 | -8.615850e-47 |
Msa0208000 | Msa0283420 | 0.812625 | 3.859093e-51 | -8.615850e-47 |
Msa0208000 | Msa0296920 | 0.803769 | 2.975931e-49 | -8.615850e-47 |
Msa0208000 | Msa0304840 | 0.827982 | 1.157950e-54 | -8.615850e-47 |
Msa0208000 | Msa0311720 | 0.804996 | 1.651959e-49 | -8.615850e-47 |
Msa0208000 | Msa0312910 | 0.807566 | 4.748639e-50 | -8.615850e-47 |
Msa0208000 | Msa0341230 | 0.824538 | 7.644030e-54 | -8.615850e-47 |
Msa0208000 | Msa0342290 | 0.801513 | 8.689158e-49 | -8.615850e-47 |
Msa0208000 | Msa0363060 | 0.831383 | 1.722517e-55 | -8.615850e-47 |
Msa0208000 | Msa0363810 | 0.821133 | 4.748185e-53 | -8.615850e-47 |
Msa0208000 | Msa0377440 | 0.809911 | 1.497611e-50 | -8.615850e-47 |
Msa0208000 | Msa0381000 | 0.838280 | 3.159197e-57 | -8.615850e-47 |
Msa0208000 | Msa0381080 | 0.826755 | 2.279100e-54 | -8.615850e-47 |
Msa0208000 | Msa0384670 | 0.833306 | 5.753346e-56 | -8.615850e-47 |
Msa0208000 | Msa0387050 | 0.803938 | 2.744870e-49 | -8.615850e-47 |
Msa0208000 | Msa0390960 | 0.803653 | 3.145390e-49 | -8.615850e-47 |
Msa0208000 | Msa0394690 | 0.841588 | 4.337540e-58 | -8.615850e-47 |
Msa0208000 | Msa0411410 | 0.820102 | 8.187807e-53 | -8.615850e-47 |
Msa0208000 | Msa0416960 | 0.809125 | 2.208811e-50 | -8.615850e-47 |
Msa0208000 | Msa0430870 | 0.824242 | 8.972980e-54 | -8.615850e-47 |
Msa0208000 | Msa0430950 | 0.814880 | 1.230051e-51 | -8.615850e-47 |
Msa0208000 | Msa0432070 | 0.801097 | 1.057609e-48 | -8.615850e-47 |
Msa0208000 | Msa0434570 | 0.829272 | 5.649331e-55 | -8.615850e-47 |
Msa0208000 | Msa0434770 | 0.829419 | 5.202564e-55 | -8.615850e-47 |
Msa0208000 | Msa0435220 | 0.802322 | 5.927331e-49 | -8.615850e-47 |
Msa0208000 | Msa0436200 | 0.822307 | 2.541245e-53 | -8.615850e-47 |
Msa0208000 | Msa0442310 | 0.807875 | 4.081662e-50 | -8.615850e-47 |
Msa0208000 | Msa0443430 | 0.813872 | 2.054548e-51 | -8.615850e-47 |
Msa0208000 | Msa0446900 | 0.802847 | 4.618819e-49 | -8.615850e-47 |
Msa0208000 | Msa0473980 | 0.816626 | 5.018445e-52 | -8.615850e-47 |
Msa0208000 | Msa0474700 | 0.807569 | 4.740939e-50 | -8.615850e-47 |
Msa0208000 | Msa0478580 | 0.831065 | 2.061909e-55 | -8.615850e-47 |
Msa0208000 | Msa0482180 | 0.807477 | 4.958799e-50 | -8.615850e-47 |
Msa0208000 | Msa0511770 | 0.802299 | 5.992092e-49 | -8.615850e-47 |
Msa0208000 | Msa0516120 | 0.809216 | 2.111892e-50 | -8.615850e-47 |
Msa0208000 | Msa0518960 | 0.830764 | 2.444159e-55 | -8.615850e-47 |
Msa0208000 | Msa0524590 | 0.811761 | 5.956479e-51 | -8.615850e-47 |
Msa0208000 | Msa0527910 | 0.805773 | 1.135342e-49 | -8.615850e-47 |
Msa0208000 | Msa0555400 | 0.804351 | 2.252155e-49 | -8.615850e-47 |
Msa0208000 | Msa0578090 | 0.814900 | 1.217098e-51 | -8.615850e-47 |
Msa0208000 | Msa0582280 | 0.808067 | 3.716226e-50 | -8.615850e-47 |
Msa0208000 | Msa0583500 | 0.806831 | 6.795167e-50 | -8.615850e-47 |
Msa0208000 | Msa0584550 | 0.803057 | 4.179258e-49 | -8.615850e-47 |
Msa0208000 | Msa0594200 | 0.838026 | 3.671482e-57 | -8.615850e-47 |
Msa0208000 | Msa0599900 | 0.821613 | 3.679490e-53 | -8.615850e-47 |
Msa0208000 | Msa0606810 | 0.823433 | 1.388952e-53 | -8.615850e-47 |
Msa0208000 | Msa0609220 | 0.817547 | 3.116439e-52 | -8.615850e-47 |
Msa0208000 | Msa0621650 | 0.807392 | 5.170621e-50 | -8.615850e-47 |
Msa0208000 | Msa0626940 | 0.809123 | 2.210184e-50 | -8.615850e-47 |
Msa0208000 | Msa0628290 | 0.834414 | 3.039393e-56 | -8.615850e-47 |
Msa0208000 | Msa0630950 | 0.802430 | 5.632281e-49 | -8.615850e-47 |
Msa0208000 | Msa0640940 | 0.814314 | 1.641186e-51 | -8.615850e-47 |
Msa0208000 | Msa0643320 | 0.825072 | 5.719905e-54 | -8.615850e-47 |
Msa0208000 | Msa0646400 | 0.805568 | 1.253794e-49 | -8.615850e-47 |
Msa0208000 | Msa0649410 | 0.805530 | 1.276888e-49 | -8.615850e-47 |
Msa0208000 | Msa0658480 | 0.803464 | 3.442754e-49 | -8.615850e-47 |
Msa0208000 | Msa0659990 | 0.809029 | 2.315577e-50 | -8.615850e-47 |
Msa0208000 | Msa0664760 | 0.802975 | 4.347260e-49 | -8.615850e-47 |
Msa0208000 | Msa0669720 | 0.802867 | 4.574770e-49 | -8.615850e-47 |
Msa0208000 | Msa0669760 | 0.815459 | 9.147143e-52 | -8.615850e-47 |
Msa0208000 | Msa0679100 | 0.801846 | 7.425757e-49 | -8.615850e-47 |
Msa0208000 | Msa0679360 | 0.806614 | 7.550211e-50 | -8.615850e-47 |
Msa0208000 | Msa0683140 | 0.819851 | 9.349652e-53 | -8.615850e-47 |
Msa0208000 | Msa0686080 | 0.822441 | 2.364562e-53 | -8.615850e-47 |
Msa0208000 | Msa0687230 | 0.801597 | 8.354790e-49 | -8.615850e-47 |
Msa0208000 | Msa0689420 | 0.836213 | 1.067459e-56 | -8.615850e-47 |
Msa0208000 | Msa0689760 | 0.832126 | 1.129458e-55 | -8.615850e-47 |
Msa0208000 | Msa0716860 | 0.818752 | 1.663430e-52 | -8.615850e-47 |
Msa0208000 | Msa0743530 | 0.820468 | 6.752224e-53 | -8.615850e-47 |
Msa0208000 | Msa0789560 | 0.837621 | 4.666490e-57 | -8.615850e-47 |
Msa0208000 | Msa0809140 | 0.803345 | 3.644134e-49 | -8.615850e-47 |
Msa0208000 | Msa0820890 | 0.820988 | 5.128179e-53 | -8.615850e-47 |
Msa0208000 | Msa0825270 | 0.805223 | 1.481016e-49 | -8.615850e-47 |
Msa0208000 | Msa0866400 | 0.809396 | 1.931937e-50 | -8.615850e-47 |
Msa0208000 | Msa0869010 | 0.838240 | 3.234523e-57 | -8.615850e-47 |
Msa0208000 | Msa0870650 | 0.832955 | 7.035954e-56 | -8.615850e-47 |
Msa0208000 | Msa0879850 | 0.821475 | 3.958249e-53 | -8.615850e-47 |
Msa0208000 | Msa0898660 | 0.814687 | 1.357324e-51 | -8.615850e-47 |
Msa0208000 | Msa0899290 | 0.819464 | 1.145900e-52 | -8.615850e-47 |
Msa0208000 | Msa0907850 | 0.805767 | 1.138940e-49 | -8.615850e-47 |
Msa0208000 | Msa0937330 | 0.809781 | 1.596815e-50 | -8.615850e-47 |
Msa0208000 | Msa0947800 | 0.800895 | 1.162807e-48 | -8.615850e-47 |
Msa0208000 | Msa0981310 | 0.807234 | 5.583581e-50 | -8.615850e-47 |
Msa0208000 | Msa0981430 | 0.808267 | 3.368544e-50 | -8.615850e-47 |
Msa0208000 | Msa0993240 | 0.807301 | 5.403648e-50 | -8.615850e-47 |
Msa0208000 | Msa0996020 | 0.826266 | 2.980339e-54 | -8.615850e-47 |
Msa0208000 | Msa1010460 | 0.861259 | 1.163070e-63 | -8.615850e-47 |
Msa0208000 | Msa1027250 | 0.814178 | 1.758748e-51 | -8.615850e-47 |
Msa0208000 | Msa1027300 | 0.802651 | 5.071130e-49 | -8.615850e-47 |
Msa0208000 | Msa1027360 | 0.824166 | 9.353744e-54 | -8.615850e-47 |
Msa0208000 | Msa1036740 | 0.840796 | 7.006661e-58 | -8.615850e-47 |
Msa0208000 | Msa1042480 | 0.809851 | 1.542189e-50 | -8.615850e-47 |
Msa0208000 | Msa1070390 | 0.804208 | 2.412678e-49 | -8.615850e-47 |
Msa0208000 | Msa1077070 | 0.827867 | 1.233853e-54 | -8.615850e-47 |
Msa0208000 | Msa1083880 | 0.809750 | 1.621400e-50 | -8.615850e-47 |
Msa0208000 | Msa1089270 | 0.817485 | 3.217842e-52 | -8.615850e-47 |
Msa0208000 | Msa1093100 | 0.818465 | 1.932621e-52 | -8.615850e-47 |
Msa0208000 | Msa1095790 | 0.816090 | 6.616266e-52 | -8.615850e-47 |
Msa0208000 | Msa1098890 | 0.821850 | 3.241898e-53 | -8.615850e-47 |
Msa0208000 | Msa1113590 | 0.825429 | 4.711739e-54 | -8.615850e-47 |
Msa0208000 | Msa1114040 | 0.809050 | 2.291148e-50 | -8.615850e-47 |
Msa0208000 | Msa1121110 | 0.810676 | 1.023786e-50 | -8.615850e-47 |
Msa0208000 | Msa1122780 | 0.837771 | 4.270385e-57 | -8.615850e-47 |
Msa0208000 | Msa1127540 | 0.839745 | 1.318777e-57 | -8.615850e-47 |
Msa0208000 | Msa1144970 | 0.810084 | 1.373951e-50 | -8.615850e-47 |
Msa0208000 | Msa1163870 | 0.818919 | 1.524888e-52 | -8.615850e-47 |
Msa0208000 | Msa1176360 | 0.817180 | 3.769208e-52 | -8.615850e-47 |
Msa0208000 | Msa1181170 | -0.801181 | 1.016402e-48 | -8.615850e-47 |
Msa0208000 | Msa1201640 | 0.845589 | 3.697087e-59 | -8.615850e-47 |
Msa0208000 | Msa1205480 | 0.841194 | 5.508375e-58 | -8.615850e-47 |
Msa0208000 | Msa1205590 | 0.825197 | 5.344695e-54 | -8.615850e-47 |
Msa0208000 | Msa1206650 | 0.817805 | 2.725355e-52 | -8.615850e-47 |
Msa0208000 | Msa1207730 | 0.823653 | 1.233457e-53 | -8.615850e-47 |
Msa0208000 | Msa1211340 | 0.827122 | 1.862716e-54 | -8.615850e-47 |
Msa0208000 | Msa1214320 | 0.825537 | 4.440606e-54 | -8.615850e-47 |
Msa0208000 | Msa1236390 | 0.819682 | 1.021898e-52 | -8.615850e-47 |
Msa0208000 | Msa1242640 | 0.851859 | 6.745358e-61 | -8.615850e-47 |
Msa0208000 | Msa1253810 | 0.807541 | 4.805436e-50 | -8.615850e-47 |
Msa0208000 | Msa1254620 | 0.806812 | 6.857930e-50 | -8.615850e-47 |
Msa0208000 | Msa1257070 | 0.824910 | 6.247230e-54 | -8.615850e-47 |
Msa0208000 | Msa1259640 | 0.822111 | 2.820557e-53 | -8.615850e-47 |
Msa0208000 | Msa1264420 | 0.807601 | 4.668525e-50 | -8.615850e-47 |
Msa0208000 | Msa1270660 | 0.800770 | 1.233166e-48 | -8.615850e-47 |
Msa0208000 | Msa1276970 | 0.800557 | 1.362646e-48 | -8.615850e-47 |
Msa0208000 | Msa1280620 | 0.813660 | 2.287550e-51 | -8.615850e-47 |
Msa0208000 | Msa1294960 | 0.811883 | 5.603712e-51 | -8.615850e-47 |
Msa0208000 | Msa1297530 | 0.801313 | 9.549941e-49 | -8.615850e-47 |
Msa0208000 | Msa1299330 | 0.816015 | 6.873973e-52 | -8.615850e-47 |
Msa0208000 | Msa1299700 | 0.812702 | 3.712581e-51 | -8.615850e-47 |
Msa0208000 | Msa1304810 | 0.811907 | 5.535829e-51 | -8.615850e-47 |
Msa0208000 | Msa1318620 | 0.826843 | 2.171231e-54 | -8.615850e-47 |
Msa0208000 | Msa1320820 | 0.843391 | 1.442544e-58 | -8.615850e-47 |
Msa0208000 | Msa1329450 | 0.804965 | 1.676759e-49 | -8.615850e-47 |
Msa0208000 | Msa1329790 | 0.828570 | 8.353409e-55 | -8.615850e-47 |
Msa0208000 | Msa1336040 | 0.800580 | 1.348222e-48 | -8.615850e-47 |
Msa0208000 | Msa1338250 | 0.806624 | 7.516781e-50 | -8.615850e-47 |
Msa0208000 | Msa1340830 | 0.815970 | 7.036064e-52 | -8.615850e-47 |
Msa0208000 | Msa1341490 | 0.805293 | 1.431489e-49 | -8.615850e-47 |
Msa0208000 | Msa1344310 | 0.843193 | 1.628843e-58 | -8.615850e-47 |
Msa0208000 | Msa1364160 | 0.819160 | 1.343493e-52 | -8.615850e-47 |
Msa0208000 | Msa1381650 | 0.809495 | 1.839690e-50 | -8.615850e-47 |
Msa0208000 | Msa1393800 | 0.842661 | 2.255822e-58 | -8.615850e-47 |
Msa0208000 | Msa1411950 | 0.803840 | 2.877232e-49 | -8.615850e-47 |
Msa0208000 | Msa1416260 | 0.844053 | 9.591023e-59 | -8.615850e-47 |
Msa0208000 | Msa1420250 | 0.833486 | 5.188123e-56 | -8.615850e-47 |
Msa0208000 | Msa1424350 | 0.811863 | 5.658079e-51 | -8.615850e-47 |
Msa0208000 | Msa1426570 | 0.805470 | 1.314717e-49 | -8.615850e-47 |
Msa0208000 | Msa1426910 | 0.828110 | 1.078347e-54 | -8.615850e-47 |
Msa0208000 | Msa1432480 | 0.802964 | 4.368639e-49 | -8.615850e-47 |
Msa0208000 | Msa1433600 | 0.816791 | 4.608665e-52 | -8.615850e-47 |
Msa0208000 | Msa1450720 | 0.821303 | 4.338374e-53 | -8.615850e-47 |
Msa0208000 | Msa1451150 | 0.819578 | 1.078779e-52 | -8.615850e-47 |
Msa0208000 | Msa1458030 | 0.800274 | 1.556343e-48 | -8.615850e-47 |
Msa0208000 | Msa1463600 | 0.827219 | 1.765034e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0208000 | MtrunA17_Chr2g0307061 | 97.468 | 79 | 2 | 0 | 1 | 79 | 1 | 79 | 3.95e-48 | 157 |
Msa0208000 | MtrunA17_Chr2g0295821 | 39.189 | 74 | 44 | 1 | 1 | 73 | 1 | 74 | 5.77e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0208000 | AT3G57340.1 | 61.905 | 84 | 25 | 1 | 1 | 77 | 1 | 84 | 7.42e-26 | 100 |
Msa0208000 | AT3G57340.2 | 61.905 | 84 | 25 | 1 | 1 | 77 | 1 | 84 | 7.42e-26 | 100 |
Msa0208000 | AT5G05750.1 | 56.627 | 83 | 30 | 1 | 1 | 77 | 1 | 83 | 5.48e-23 | 91.3 |
Msa0208000 | AT5G49060.2 | 47.761 | 67 | 34 | 1 | 1 | 66 | 1 | 67 | 2.10e-13 | 65.9 |
Msa0208000 | AT5G49060.1 | 47.761 | 67 | 34 | 1 | 1 | 66 | 1 | 67 | 2.10e-13 | 65.9 |
Find 26 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTTACAAAGTTTGATAAA+TGG | 0.193846 | 2_1:+42040706 | None:intergenic |
TTGTCGCGAAAATTTGATTT+TGG | 0.247425 | 2_1:+42040827 | None:intergenic |
GGTAAAGAAGCTTTGGAAAA+AGG | 0.294145 | 2_1:-42041835 | Msa0208000:CDS |
GGTTACAAAGTTTGATAAAT+GGG | 0.353032 | 2_1:+42040707 | None:intergenic |
ATCACCTGCATCGCTGTTTA+CGG | 0.362410 | 2_1:+42041732 | None:intergenic |
GAAAATCGGTAAAGAAGCTT+TGG | 0.398563 | 2_1:-42041842 | Msa0208000:CDS |
ATTCGGTAAAATGAAAGTAT+TGG | 0.425287 | 2_1:+42040796 | None:intergenic |
CCTTCAATTCGTCGAAGGAC+TGG | 0.449513 | 2_1:-42041664 | Msa0208000:CDS |
TGCCACATCAGCTGAGGAGC+CGG | 0.449582 | 2_1:-42041707 | Msa0208000:CDS |
CCAGTCCTTCGACGAATTGA+AGG | 0.463851 | 2_1:+42041664 | None:intergenic |
GCATTGAAATCATTGAAAAT+CGG | 0.472275 | 2_1:-42041856 | Msa0208000:CDS |
CGCCGGCTCCTCAGCTGATG+TGG | 0.473969 | 2_1:+42041705 | None:intergenic |
ATCCGTTATTGCAAAATGGA+TGG | 0.495759 | 2_1:-42041892 | None:intergenic |
TCCACCGTAAACAGCGATGC+AGG | 0.523350 | 2_1:-42041736 | Msa0208000:CDS |
CGATCGGAAGAGACGGGTCG+AGG | 0.526213 | 2_1:+42041770 | None:intergenic |
TCGACGAATTGAAGGCTGAT+CGG | 0.542496 | 2_1:+42041672 | None:intergenic |
GATCATCGATCGGAAGAGAC+GGG | 0.559925 | 2_1:+42041764 | None:intergenic |
GTAAAATGAAAGTATTGGAA+TGG | 0.562968 | 2_1:+42040801 | None:intergenic |
TCCGTTATTGCAAAATGGAT+GGG | 0.563453 | 2_1:-42041891 | None:intergenic |
AGATCATCGATCGGAAGAGA+CGG | 0.568914 | 2_1:+42041763 | None:intergenic |
ATCAGCCTTCAATTCGTCGA+AGG | 0.614022 | 2_1:-42041669 | Msa0208000:CDS |
TGATCGGATGAATTCTTCGC+CGG | 0.631527 | 2_1:+42041688 | None:intergenic |
ACCTGCATCGCTGTTTACGG+TGG | 0.632948 | 2_1:+42041735 | None:intergenic |
TGATCATGCCACATCAGCTG+AGG | 0.636133 | 2_1:-42041713 | Msa0208000:CDS |
TCGGAAGAGACGGGTCGAGG+CGG | 0.656270 | 2_1:+42041773 | None:intergenic |
GTGGACAGCAGATCATCGAT+CGG | 0.673169 | 2_1:+42041754 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TACCAAATTTAAAACAAAAT+AGG | - | chr2_1:42041142-42041161 | Msa0208000:intron | 15.0% |
!!! | AACCTATTTTGTTTTAAATT+TGG | + | chr2_1:42041147-42041166 | None:intergenic | 15.0% |
!! | TTAAAGTTTGATAAATATGA+AGG | + | chr2_1:42041215-42041234 | None:intergenic | 15.0% |
!!! | TACATAATTTAAAACCAAAT+AGG | - | chr2_1:42041431-42041450 | Msa0208000:intron | 15.0% |
!! | ATATGATATATGAAACTATT+TGG | + | chr2_1:42041598-42041617 | None:intergenic | 15.0% |
!!! | TACCAAATTTAAAACAAAAT+AGG | - | chr2_1:42041142-42041161 | Msa0208000:intron | 15.0% |
!!! | AACCTATTTTGTTTTAAATT+TGG | + | chr2_1:42041147-42041166 | None:intergenic | 15.0% |
!! | TTAAAGTTTGATAAATATGA+AGG | + | chr2_1:42041215-42041234 | None:intergenic | 15.0% |
!!! | TACATAATTTAAAACCAAAT+AGG | - | chr2_1:42041431-42041450 | Msa0208000:intron | 15.0% |
!! | ATATGATATATGAAACTATT+TGG | + | chr2_1:42041598-42041617 | None:intergenic | 15.0% |
!!! | TATTCGTAAAATGAAAGTAT+TGG | + | chr2_1:42041278-42041297 | None:intergenic | 20.0% |
!! | TACAAGTTTGATAAATATGA+AGG | + | chr2_1:42041356-42041375 | None:intergenic | 20.0% |
!! | AACATAATATTGAACCTATT+TGG | + | chr2_1:42041448-42041467 | None:intergenic | 20.0% |
!! | TAGAAGTTTGATAAATATGA+AGG | + | chr2_1:42041503-42041522 | None:intergenic | 20.0% |
!!! | AAACTATTTGGTTTTGTATT+CGG | + | chr2_1:42041586-42041605 | None:intergenic | 20.0% |
!!! | ATATATCATATTTTGCATCA+AGG | - | chr2_1:42041607-42041626 | Msa0208000:intron | 20.0% |
!!! | TATATCATATTTTGCATCAA+GGG | - | chr2_1:42041608-42041627 | Msa0208000:intron | 20.0% |
!!! | AACCTATTTGTTTTTGTATT+CGG | + | chr2_1:42041810-42041829 | None:intergenic | 20.0% |
!!! | TATTCGTAAAATGAAAGTAT+TGG | + | chr2_1:42041278-42041297 | None:intergenic | 20.0% |
!! | TACAAGTTTGATAAATATGA+AGG | + | chr2_1:42041356-42041375 | None:intergenic | 20.0% |
!! | AACATAATATTGAACCTATT+TGG | + | chr2_1:42041448-42041467 | None:intergenic | 20.0% |
!! | TAGAAGTTTGATAAATATGA+AGG | + | chr2_1:42041503-42041522 | None:intergenic | 20.0% |
!!! | AAACTATTTGGTTTTGTATT+CGG | + | chr2_1:42041586-42041605 | None:intergenic | 20.0% |
!!! | ATATATCATATTTTGCATCA+AGG | - | chr2_1:42041607-42041626 | Msa0208000:intron | 20.0% |
!!! | TATATCATATTTTGCATCAA+GGG | - | chr2_1:42041608-42041627 | Msa0208000:intron | 20.0% |
!!! | AACCTATTTGTTTTTGTATT+CGG | + | chr2_1:42041810-42041829 | None:intergenic | 20.0% |
! | GCATTGAAATCATTGAAAAT+CGG | - | chr2_1:42040730-42040749 | Msa0208000:CDS | 25.0% |
!!! | AATGAAGGTTTTAGCATTTA+TGG | + | chr2_1:42041063-42041082 | None:intergenic | 25.0% |
! | TTATCAAACTTTAACCATAC+AGG | - | chr2_1:42041221-42041240 | Msa0208000:intron | 25.0% |
! | TTACGAATATGAAACCAAAT+AGG | - | chr2_1:42041289-42041308 | Msa0208000:intron | 25.0% |
! | ACATATCATGTTTACATCAA+GGG | - | chr2_1:42041315-42041334 | Msa0208000:intron | 25.0% |
! | AATATTATGTTACGCATCAA+AGG | - | chr2_1:42041457-42041476 | Msa0208000:intron | 25.0% |
! | TATCAAACTTCTAACCATAT+AGG | - | chr2_1:42041510-42041529 | Msa0208000:intron | 25.0% |
!!! | AAATGAGATTTTAGCCTATA+TGG | + | chr2_1:42041527-42041546 | None:intergenic | 25.0% |
!!! | AAAATCTCATTTTTGTGACA+AGG | - | chr2_1:42041535-42041554 | Msa0208000:intron | 25.0% |
!!! | AAATCTCATTTTTGTGACAA+GGG | - | chr2_1:42041536-42041555 | Msa0208000:intron | 25.0% |
! | TATGGTTAGAAGTTTGATAA+AGG | + | chr2_1:42041509-42041528 | None:intergenic | 25.0% |
! | TATCAAACTTCTAACCATAT+AGG | - | chr2_1:42041510-42041529 | Msa0208000:intron | 25.0% |
!!! | AAATGAGATTTTAGCCTATA+TGG | + | chr2_1:42041527-42041546 | None:intergenic | 25.0% |
! | TTCTCATTTATCAAACTTGT+AGG | - | chr2_1:42041728-42041747 | Msa0208000:CDS | 25.0% |
!!! | GTAAAATGAAAGTATTGGAA+TGG | + | chr2_1:42041273-42041292 | None:intergenic | 25.0% |
!! | ATTCGGTAAAATGAAAGTAT+TGG | + | chr2_1:42041793-42041812 | None:intergenic | 25.0% |
! | TACCGAATACAAAAACAAAT+AGG | - | chr2_1:42041805-42041824 | Msa0208000:CDS | 25.0% |
! | GCATTGAAATCATTGAAAAT+CGG | - | chr2_1:42040730-42040749 | Msa0208000:CDS | 25.0% |
!!! | AATGAAGGTTTTAGCATTTA+TGG | + | chr2_1:42041063-42041082 | None:intergenic | 25.0% |
! | TTATCAAACTTTAACCATAC+AGG | - | chr2_1:42041221-42041240 | Msa0208000:intron | 25.0% |
! | TTACGAATATGAAACCAAAT+AGG | - | chr2_1:42041289-42041308 | Msa0208000:intron | 25.0% |
! | ACATATCATGTTTACATCAA+GGG | - | chr2_1:42041315-42041334 | Msa0208000:intron | 25.0% |
! | AATATTATGTTACGCATCAA+AGG | - | chr2_1:42041457-42041476 | Msa0208000:intron | 25.0% |
! | TATCAAACTTCTAACCATAT+AGG | - | chr2_1:42041510-42041529 | Msa0208000:intron | 25.0% |
!!! | AAATGAGATTTTAGCCTATA+TGG | + | chr2_1:42041527-42041546 | None:intergenic | 25.0% |
!!! | AAAATCTCATTTTTGTGACA+AGG | - | chr2_1:42041535-42041554 | Msa0208000:intron | 25.0% |
!!! | AAATCTCATTTTTGTGACAA+GGG | - | chr2_1:42041536-42041555 | Msa0208000:intron | 25.0% |
! | TATGGTTAGAAGTTTGATAA+AGG | + | chr2_1:42041509-42041528 | None:intergenic | 25.0% |
! | TATCAAACTTCTAACCATAT+AGG | - | chr2_1:42041510-42041529 | Msa0208000:intron | 25.0% |
!!! | AAATGAGATTTTAGCCTATA+TGG | + | chr2_1:42041527-42041546 | None:intergenic | 25.0% |
! | TTCTCATTTATCAAACTTGT+AGG | - | chr2_1:42041728-42041747 | Msa0208000:CDS | 25.0% |
!!! | GTAAAATGAAAGTATTGGAA+TGG | + | chr2_1:42041273-42041292 | None:intergenic | 25.0% |
!! | ATTCGGTAAAATGAAAGTAT+TGG | + | chr2_1:42041793-42041812 | None:intergenic | 25.0% |
! | TACCGAATACAAAAACAAAT+AGG | - | chr2_1:42041805-42041824 | Msa0208000:CDS | 25.0% |
AAATATCATGTTTCGCATGA+AGG | - | chr2_1:42041168-42041187 | Msa0208000:intron | 30.0% | |
AATATCATGTTTCGCATGAA+GGG | - | chr2_1:42041169-42041188 | Msa0208000:intron | 30.0% | |
ACATGATATGTGAACCTATT+TGG | + | chr2_1:42041306-42041325 | None:intergenic | 30.0% | |
CACATATCATGTTTACATCA+AGG | - | chr2_1:42041314-42041333 | Msa0208000:intron | 30.0% | |
! | TCGGTAAAATGAAAGTGTAT+TGG | + | chr2_1:42041567-42041586 | None:intergenic | 30.0% |
!! | TTGTCGCGAAAATTTGATTT+TGG | + | chr2_1:42041762-42041781 | None:intergenic | 30.0% |
! | AAAATCAAATTTTCGCGACA+AGG | - | chr2_1:42041761-42041780 | Msa0208000:CDS | 30.0% |
! | AAATCAAATTTTCGCGACAA+GGG | - | chr2_1:42041762-42041781 | Msa0208000:CDS | 30.0% |
AAATATCATGTTTCGCATGA+AGG | - | chr2_1:42041168-42041187 | Msa0208000:intron | 30.0% | |
AATATCATGTTTCGCATGAA+GGG | - | chr2_1:42041169-42041188 | Msa0208000:intron | 30.0% | |
ACATGATATGTGAACCTATT+TGG | + | chr2_1:42041306-42041325 | None:intergenic | 30.0% | |
CACATATCATGTTTACATCA+AGG | - | chr2_1:42041314-42041333 | Msa0208000:intron | 30.0% | |
! | TCGGTAAAATGAAAGTGTAT+TGG | + | chr2_1:42041567-42041586 | None:intergenic | 30.0% |
!! | TTGTCGCGAAAATTTGATTT+TGG | + | chr2_1:42041762-42041781 | None:intergenic | 30.0% |
! | AAAATCAAATTTTCGCGACA+AGG | - | chr2_1:42041761-42041780 | Msa0208000:CDS | 30.0% |
! | AAATCAAATTTTCGCGACAA+GGG | - | chr2_1:42041762-42041781 | Msa0208000:CDS | 30.0% |
GAAAATCGGTAAAGAAGCTT+TGG | - | chr2_1:42040744-42040763 | Msa0208000:CDS | 35.0% | |
!! | GGTAAAGAAGCTTTGGAAAA+AGG | - | chr2_1:42040751-42040770 | Msa0208000:CDS | 35.0% |
GTCATCGAGAAACATATGAT+AGG | - | chr2_1:42041095-42041114 | Msa0208000:intron | 35.0% | |
!! | AAACGAGATTTTAGCCTGTA+TGG | + | chr2_1:42041238-42041257 | None:intergenic | 35.0% |
! | TAAAATTCGTTTTCGCAGCA+AGG | - | chr2_1:42041387-42041406 | Msa0208000:intron | 35.0% |
GAAAATCGGTAAAGAAGCTT+TGG | - | chr2_1:42040744-42040763 | Msa0208000:CDS | 35.0% | |
!! | GGTAAAGAAGCTTTGGAAAA+AGG | - | chr2_1:42040751-42040770 | Msa0208000:CDS | 35.0% |
GTCATCGAGAAACATATGAT+AGG | - | chr2_1:42041095-42041114 | Msa0208000:intron | 35.0% | |
!! | AAACGAGATTTTAGCCTGTA+TGG | + | chr2_1:42041238-42041257 | None:intergenic | 35.0% |
! | TAAAATTCGTTTTCGCAGCA+AGG | - | chr2_1:42041387-42041406 | Msa0208000:intron | 35.0% |
GACTCTTGTCGCAAAAATGA+AGG | + | chr2_1:42041078-42041097 | None:intergenic | 40.0% | |
TTTCGCATGAAGGGATATAG+AGG | - | chr2_1:42041178-42041197 | Msa0208000:intron | 40.0% | |
TTCGCATGAAGGGATATAGA+GGG | - | chr2_1:42041179-42041198 | Msa0208000:intron | 40.0% | |
! | AAAATCTCGTTTTCGCGACA+AGG | - | chr2_1:42041246-42041265 | Msa0208000:intron | 40.0% |
TGTTACGCATCAAAGGACAT+CGG | - | chr2_1:42041464-42041483 | Msa0208000:intron | 40.0% | |
GACTCTTGTCGCAAAAATGA+AGG | + | chr2_1:42041078-42041097 | None:intergenic | 40.0% | |
TTTCGCATGAAGGGATATAG+AGG | - | chr2_1:42041178-42041197 | Msa0208000:intron | 40.0% | |
TTCGCATGAAGGGATATAGA+GGG | - | chr2_1:42041179-42041198 | Msa0208000:intron | 40.0% | |
! | AAAATCTCGTTTTCGCGACA+AGG | - | chr2_1:42041246-42041265 | Msa0208000:intron | 40.0% |
TGTTACGCATCAAAGGACAT+CGG | - | chr2_1:42041464-42041483 | Msa0208000:intron | 40.0% | |
AGATCATCGATCGGAAGAGA+CGG | + | chr2_1:42040826-42040845 | None:intergenic | 45.0% | |
ATCACCTGCATCGCTGTTTA+CGG | + | chr2_1:42040857-42040876 | None:intergenic | 45.0% | |
TGATCGGATGAATTCTTCGC+CGG | + | chr2_1:42040901-42040920 | None:intergenic | 45.0% | |
TCGACGAATTGAAGGCTGAT+CGG | + | chr2_1:42040917-42040936 | None:intergenic | 45.0% | |
ATCAGCCTTCAATTCGTCGA+AGG | - | chr2_1:42040917-42040936 | Msa0208000:intron | 45.0% | |
TTTACATCAAGGGCCATCGA+GGG | - | chr2_1:42041325-42041344 | Msa0208000:intron | 45.0% | |
TATGAAGGTTGAACCCTCGA+TGG | + | chr2_1:42041341-42041360 | None:intergenic | 45.0% | |
GTTACGCATCAAAGGACATC+GGG | - | chr2_1:42041465-42041484 | Msa0208000:intron | 45.0% | |
TTACGCATCAAAGGACATCG+GGG | - | chr2_1:42041466-42041485 | Msa0208000:intron | 45.0% | |
! | TTTTGCATCAAGGGACATCG+AGG | - | chr2_1:42041617-42041636 | Msa0208000:intron | 45.0% |
TTTGCATCAAGGGACATCGA+GGG | - | chr2_1:42041618-42041637 | Msa0208000:intron | 45.0% | |
GACCATTGATGCGAAACATG+AGG | + | chr2_1:42041698-42041717 | None:intergenic | 45.0% | |
AGATCATCGATCGGAAGAGA+CGG | + | chr2_1:42040826-42040845 | None:intergenic | 45.0% | |
ATCACCTGCATCGCTGTTTA+CGG | + | chr2_1:42040857-42040876 | None:intergenic | 45.0% | |
TGATCGGATGAATTCTTCGC+CGG | + | chr2_1:42040901-42040920 | None:intergenic | 45.0% | |
TCGACGAATTGAAGGCTGAT+CGG | + | chr2_1:42040917-42040936 | None:intergenic | 45.0% | |
ATCAGCCTTCAATTCGTCGA+AGG | - | chr2_1:42040917-42040936 | Msa0208000:intron | 45.0% | |
TTTACATCAAGGGCCATCGA+GGG | - | chr2_1:42041325-42041344 | Msa0208000:intron | 45.0% | |
TATGAAGGTTGAACCCTCGA+TGG | + | chr2_1:42041341-42041360 | None:intergenic | 45.0% | |
GTTACGCATCAAAGGACATC+GGG | - | chr2_1:42041465-42041484 | Msa0208000:intron | 45.0% | |
TTACGCATCAAAGGACATCG+GGG | - | chr2_1:42041466-42041485 | Msa0208000:intron | 45.0% | |
! | TTTTGCATCAAGGGACATCG+AGG | - | chr2_1:42041617-42041636 | Msa0208000:intron | 45.0% |
TTTGCATCAAGGGACATCGA+GGG | - | chr2_1:42041618-42041637 | Msa0208000:intron | 45.0% | |
GACCATTGATGCGAAACATG+AGG | + | chr2_1:42041698-42041717 | None:intergenic | 45.0% | |
GATCATCGATCGGAAGAGAC+GGG | + | chr2_1:42040825-42040844 | None:intergenic | 50.0% | |
GTGGACAGCAGATCATCGAT+CGG | + | chr2_1:42040835-42040854 | None:intergenic | 50.0% | |
TGATCATGCCACATCAGCTG+AGG | - | chr2_1:42040873-42040892 | Msa0208000:intron | 50.0% | |
CCAGTCCTTCGACGAATTGA+AGG | + | chr2_1:42040925-42040944 | None:intergenic | 50.0% | |
CCTTCAATTCGTCGAAGGAC+TGG | - | chr2_1:42040922-42040941 | Msa0208000:intron | 50.0% | |
GTTTACATCAAGGGCCATCG+AGG | - | chr2_1:42041324-42041343 | Msa0208000:intron | 50.0% | |
TACGCATCAAAGGACATCGG+GGG | - | chr2_1:42041467-42041486 | Msa0208000:intron | 50.0% | |
CGCCTCATGTTTCGCATCAA+TGG | - | chr2_1:42041693-42041712 | Msa0208000:CDS | 50.0% | |
GATCATCGATCGGAAGAGAC+GGG | + | chr2_1:42040825-42040844 | None:intergenic | 50.0% | |
GTGGACAGCAGATCATCGAT+CGG | + | chr2_1:42040835-42040854 | None:intergenic | 50.0% | |
TGATCATGCCACATCAGCTG+AGG | - | chr2_1:42040873-42040892 | Msa0208000:intron | 50.0% | |
CCAGTCCTTCGACGAATTGA+AGG | + | chr2_1:42040925-42040944 | None:intergenic | 50.0% | |
CCTTCAATTCGTCGAAGGAC+TGG | - | chr2_1:42040922-42040941 | Msa0208000:intron | 50.0% | |
GTTTACATCAAGGGCCATCG+AGG | - | chr2_1:42041324-42041343 | Msa0208000:intron | 50.0% | |
TACGCATCAAAGGACATCGG+GGG | - | chr2_1:42041467-42041486 | Msa0208000:intron | 50.0% | |
CGCCTCATGTTTCGCATCAA+TGG | - | chr2_1:42041693-42041712 | Msa0208000:CDS | 50.0% | |
TCCACCGTAAACAGCGATGC+AGG | - | chr2_1:42040850-42040869 | Msa0208000:intron | 55.0% | |
ACCTGCATCGCTGTTTACGG+TGG | + | chr2_1:42040854-42040873 | None:intergenic | 55.0% | |
TCCACCGTAAACAGCGATGC+AGG | - | chr2_1:42040850-42040869 | Msa0208000:intron | 55.0% | |
ACCTGCATCGCTGTTTACGG+TGG | + | chr2_1:42040854-42040873 | None:intergenic | 55.0% | |
TGCCACATCAGCTGAGGAGC+CGG | - | chr2_1:42040879-42040898 | Msa0208000:intron | 60.0% | |
TGCCACATCAGCTGAGGAGC+CGG | - | chr2_1:42040879-42040898 | Msa0208000:intron | 60.0% | |
TCGGAAGAGACGGGTCGAGG+CGG | + | chr2_1:42040816-42040835 | None:intergenic | 65.0% | |
CGATCGGAAGAGACGGGTCG+AGG | + | chr2_1:42040819-42040838 | None:intergenic | 65.0% | |
TCGGAAGAGACGGGTCGAGG+CGG | + | chr2_1:42040816-42040835 | None:intergenic | 65.0% | |
CGATCGGAAGAGACGGGTCG+AGG | + | chr2_1:42040819-42040838 | None:intergenic | 65.0% | |
!! | CGCCGGCTCCTCAGCTGATG+TGG | + | chr2_1:42040884-42040903 | None:intergenic | 70.0% |
!! | CGCCGGCTCCTCAGCTGATG+TGG | + | chr2_1:42040884-42040903 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 42040709 | 42041899 | 42040709 | ID=Msa0208000;Name=Msa0208000 |
chr2_1 | mRNA | 42040709 | 42041899 | 42040709 | ID=Msa0208000-mRNA-1;Parent=Msa0208000;Name=Msa0208000-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.5|1|1|2|0|129 |
chr2_1 | exon | 42041660 | 42041899 | 42041660 | ID=Msa0208000-mRNA-1:exon:12657;Parent=Msa0208000-mRNA-1 |
chr2_1 | exon | 42040709 | 42040858 | 42040709 | ID=Msa0208000-mRNA-1:exon:12656;Parent=Msa0208000-mRNA-1 |
chr2_1 | CDS | 42041660 | 42041899 | 42041660 | ID=Msa0208000-mRNA-1:cds;Parent=Msa0208000-mRNA-1 |
chr2_1 | CDS | 42040709 | 42040858 | 42040709 | ID=Msa0208000-mRNA-1:cds;Parent=Msa0208000-mRNA-1 |
Gene Sequence |
Protein sequence |